BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021941
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
           Thaliana Hypothetical Protein F22k18.140
          Length = 80

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFXXXXXXXXXXFCAEVGVKRHVFKVWMHNNKNN 292
           + KRFRTKFT EQK+KM+ FAE++GWR           FCAE GV+R V K+WMHNNKN+
Sbjct: 16  TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75


>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
           Arabidopsisthaliana Zinc Finger Homeobox Family Protein
          Length = 80

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFXXXXXXXXXXFCAEVGVKRHVFKVWMHNNKNN 292
           +KR RTKFT EQK++M+  AE++GWR           FC E GV R V KVW+HNNK++
Sbjct: 17  RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,168,300
Number of Sequences: 62578
Number of extensions: 217481
Number of successful extensions: 396
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)