BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021941
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 118/219 (53%), Gaps = 48/219 (21%)
Query: 78 IRYRECLKNHAACIGGNIFDGCGEFMPSGDEGTLEALKCAACECHRNFHRKEIDGETAQL 137
IRYRECLKNHA IGG+ DGC EFMPSG++GTL+ALKCAAC CHRNFHRKE +
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETE------ 100
Query: 138 ISTGRRSAVMLNPLQLPP-PLPSPTMMHHHHHHHQKYSISRHTMSPSSAIVAPMNVAFGG 196
S G R+ + PP P P +H + +
Sbjct: 101 -SIGGRAHRVPTYYNRPPQPHQPPGYLH----------------------LTSPAAPYRP 137
Query: 197 GISESSSEDLSNVLHSEGVLQHQPPAAPPPPPPFVLSKKRFRTKFTQEQKDKMMEFAEKV 256
+ ED SN S G + KRFRTKFT EQK+KM+ FAE++
Sbjct: 138 PAASGDEEDTSNPSSSGG------------------TTKRFRTKFTAEQKEKMLAFAERL 179
Query: 257 GWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295
GWR QK DD V++FCAE GV+R V K+WMHNNKN+ K
Sbjct: 180 GWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGK 218
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 113/223 (50%), Gaps = 35/223 (15%)
Query: 78 IRYRECLKNHAACIGGNIFDGCGEFMPSGDEGTLE--ALKCAACECHRNFHRKEIDGETA 135
+ Y+ECLKNHAA +GG+ DGCGEFMPS + + +L+CAAC CHRNFHR
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHR-------- 80
Query: 136 QLISTGRRSAVMLNPLQLPP-PLPSPTMMHHHHHHHQKYSISRHTMSPSSAIVAPMNVAF 194
R + LN L PP PS T H S +T +P ++ ++ F
Sbjct: 81 ------RDPSENLNFLTAPPISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGF 134
Query: 195 GGGISESSSEDLSNVLHSEGVLQHQPPAAPPPPPPFVLSKKRFRTKFTQEQKDKMMEFAE 254
G S+ V+ SE + +KR RTKFT EQK KM FAE
Sbjct: 135 PG-----PSDQDPTVVRSENSSRGA-------------MRKRTRTKFTPEQKIKMRAFAE 176
Query: 255 KVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297
K GW+ D+ V +FC EVG++R V KVWMHNNK + + K
Sbjct: 177 KAGWKINGCDEKSVREFCNEVGIERGVLKVWMHNNKYSLLNGK 219
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 78 IRYRECLKNHAACIGGNIFDGCGEFMPSGDEGTLEALKCAACECHRNFHRKEI 130
R+RECLKN A IGG+ DGCGEFMP+G EGT++ALKCAAC CHRNFHRKE+
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNT 293
+KR RTKFT EQK++M+ AE++GWR Q+QDD+ + +FC E GV R V KVW+HNNK+
Sbjct: 191 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTL 250
Query: 294 VKN 296
K+
Sbjct: 251 GKS 253
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 228 PPFVLSKKRF-RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWM 286
PP V + +RF RTKFT+ Q + F E + D +V++ + +G+ V VW
Sbjct: 1588 PPLVPAGRRFSRTKFTEFQTQALQSFFETSAY----PKDGEVERLASLLGLASRVVVVWF 1643
Query: 287 HNNKNNTVKNKQE 299
N + KN E
Sbjct: 1644 QNARQKARKNACE 1656
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 216 LQHQPPAAPPPPPPFVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEV 275
+ +PP+ PP + SK+ RT+FT Q + +F + + DD+ ++ +
Sbjct: 2224 IDSRPPSPEPPKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAY----PKDDEFEQLSNLL 2279
Query: 276 GVKRHVFKVWMHNNKNNTVKN 296
+ V VW N + KN
Sbjct: 2280 NLPTRVIVVWFQNARQKARKN 2300
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 219 QPPAAPPPPPPFVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVK 278
QP A P SK+ RT+FT Q + +F + + DD++++ + +
Sbjct: 2154 QPSAVEPYKSDASFSKRSSRTRFTDYQLRVLQDFFDTNAY----PKDDEIEQLSTVLNLP 2209
Query: 279 RHVFKVWMHNNKNNTVKNKQEPA 301
V VW N + K+ + A
Sbjct: 2210 TRVIVVWFQNARQKARKSYENQA 2232
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 216 LQHQPPAAPPPPPPFVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEV 275
+ +PP+ P + SK+ RT+FT Q + +F + + DD+ ++ +
Sbjct: 2231 IDSRPPSPEPQKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAY----PKDDEFEQLSNLL 2286
Query: 276 GVKRHVFKVWMHNNKNNTVKN 296
+ V VW N + KN
Sbjct: 2287 NLPTRVIVVWFQNARQKARKN 2307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,141,054
Number of Sequences: 539616
Number of extensions: 5458906
Number of successful extensions: 41446
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 215
Number of HSP's that attempted gapping in prelim test: 38811
Number of HSP's gapped (non-prelim): 1926
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)