Query 021941
Match_columns 305
No_of_seqs 160 out of 283
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.8 1.5E-21 5.1E-26 150.7 5.4 67 230-296 13-79 (80)
2 1wh5_A ZF-HD homeobox family p 99.8 1.2E-20 4.1E-25 145.1 5.3 67 230-296 13-79 (80)
3 2da4_A Hypothetical protein DK 99.6 3.1E-16 1.1E-20 118.9 -0.2 70 230-299 4-73 (80)
4 2da3_A Alpha-fetoprotein enhan 99.5 1.5E-15 5.1E-20 114.2 2.8 66 230-299 13-78 (80)
5 1wi3_A DNA-binding protein SAT 99.5 4.9E-15 1.7E-19 114.2 3.5 64 230-296 3-66 (71)
6 2dmq_A LIM/homeobox protein LH 99.5 3.1E-15 1.1E-19 112.9 1.3 62 231-296 4-65 (80)
7 2cra_A Homeobox protein HOX-B1 99.4 5.3E-14 1.8E-18 104.1 4.3 65 231-299 4-68 (70)
8 2dmt_A Homeobox protein BARH-l 99.4 7.5E-14 2.6E-18 105.9 4.5 65 231-299 14-78 (80)
9 2djn_A Homeobox protein DLX-5; 99.4 5.8E-14 2E-18 103.9 3.2 65 231-299 4-68 (70)
10 2dmu_A Homeobox protein goosec 99.4 4.5E-14 1.6E-18 104.3 2.5 65 231-299 4-68 (70)
11 2da2_A Alpha-fetoprotein enhan 99.4 8.7E-14 3E-18 102.6 3.6 66 230-299 3-68 (70)
12 2kt0_A Nanog, homeobox protein 99.4 2E-13 6.8E-18 103.8 4.7 64 230-297 18-81 (84)
13 2dms_A Homeobox protein OTX2; 99.4 1.3E-13 4.5E-18 104.4 3.3 65 231-299 4-68 (80)
14 2da1_A Alpha-fetoprotein enhan 99.4 1E-13 3.6E-18 102.2 2.4 64 231-298 4-67 (70)
15 2e1o_A Homeobox protein PRH; D 99.4 1.2E-13 4.2E-18 102.2 1.8 65 231-299 4-68 (70)
16 2hdd_A Protein (engrailed home 99.4 1.3E-13 4.3E-18 99.5 1.3 60 233-296 2-61 (61)
17 1bw5_A ISL-1HD, insulin gene e 99.3 3.2E-13 1.1E-17 98.8 3.0 61 233-297 2-62 (66)
18 2vi6_A Homeobox protein nanog; 99.3 2.1E-13 7.3E-18 98.6 1.8 60 233-296 2-61 (62)
19 2cue_A Paired box protein PAX6 99.3 1.1E-13 3.8E-18 105.0 0.3 62 231-296 4-65 (80)
20 2m0c_A Homeobox protein arista 99.3 4.8E-13 1.6E-17 99.2 3.3 64 231-298 6-69 (75)
21 2dn0_A Zinc fingers and homeob 99.3 8.3E-13 2.8E-17 99.3 4.4 64 232-299 6-69 (76)
22 2l7z_A Homeobox protein HOX-A1 99.3 9.3E-13 3.2E-17 98.5 4.1 65 231-299 4-68 (73)
23 2h1k_A IPF-1, pancreatic and d 99.3 1.9E-13 6.6E-18 99.3 0.4 61 233-297 2-62 (63)
24 1nk2_P Homeobox protein VND; h 99.3 4.6E-13 1.6E-17 100.9 2.1 62 231-296 6-67 (77)
25 1b8i_A Ultrabithorax, protein 99.3 3.8E-13 1.3E-17 102.6 1.6 63 232-298 18-80 (81)
26 3a01_A Homeodomain-containing 99.3 4.6E-13 1.6E-17 104.9 1.4 65 230-298 13-77 (93)
27 1ahd_P Antennapedia protein mu 99.3 3.6E-13 1.2E-17 99.5 0.7 62 234-299 2-63 (68)
28 1ig7_A Homeotic protein MSX-1; 99.3 4.2E-13 1.4E-17 95.5 0.9 57 235-295 1-57 (58)
29 3rkq_A Homeobox protein NKX-2. 99.3 6.1E-13 2.1E-17 93.8 1.3 58 233-294 1-58 (58)
30 2r5y_A Homeotic protein sex co 99.3 4.5E-13 1.5E-17 103.3 0.5 62 232-297 26-87 (88)
31 1jgg_A Segmentation protein EV 99.3 5.7E-13 2E-17 95.8 0.9 58 235-296 2-59 (60)
32 1puf_A HOX-1.7, homeobox prote 99.3 1.2E-12 4.2E-17 98.6 2.6 62 231-296 10-71 (77)
33 1yz8_P Pituitary homeobox 2; D 99.3 2.2E-13 7.4E-18 100.3 -1.7 63 233-299 2-64 (68)
34 2ly9_A Zinc fingers and homeob 99.3 2.9E-12 9.9E-17 95.3 4.4 64 234-301 6-69 (74)
35 1ftt_A TTF-1 HD, thyroid trans 99.3 1.1E-12 3.9E-17 96.7 2.1 63 234-300 2-64 (68)
36 1fjl_A Paired protein; DNA-bin 99.3 6.5E-13 2.2E-17 100.8 0.6 62 231-296 15-76 (81)
37 2k40_A Homeobox expressed in E 99.3 1E-12 3.4E-17 96.4 1.4 62 234-299 1-62 (67)
38 1zq3_P PRD-4, homeotic bicoid 99.2 7.3E-13 2.5E-17 97.7 0.3 59 234-296 2-60 (68)
39 3nar_A ZHX1, zinc fingers and 99.2 1.7E-12 5.8E-17 101.8 2.3 63 231-297 22-84 (96)
40 1du6_A PBX1, homeobox protein 99.2 1.8E-12 6.3E-17 94.0 2.0 63 233-296 2-64 (64)
41 2cuf_A FLJ21616 protein; homeo 99.2 1.3E-12 4.6E-17 102.1 0.6 63 231-297 4-81 (95)
42 1e3o_C Octamer-binding transcr 99.2 3E-12 1E-16 108.8 2.1 62 231-296 98-159 (160)
43 2da5_A Zinc fingers and homeob 99.2 5.6E-12 1.9E-16 94.9 3.4 60 236-299 9-68 (75)
44 1akh_A Protein (mating-type pr 99.2 2.8E-12 9.7E-17 92.0 1.5 58 233-294 4-61 (61)
45 1b72_A Protein (homeobox prote 99.2 1.3E-12 4.3E-17 102.6 -0.7 62 232-297 32-93 (97)
46 2ecc_A Homeobox and leucine zi 99.2 3.3E-12 1.1E-16 98.9 1.4 58 236-297 5-62 (76)
47 3a02_A Homeobox protein arista 99.2 3.9E-12 1.3E-16 91.4 1.3 57 237-297 2-58 (60)
48 1x2n_A Homeobox protein pknox1 99.2 7.9E-12 2.7E-16 92.9 2.9 68 231-299 4-71 (73)
49 1au7_A Protein PIT-1, GHF-1; c 99.2 7.7E-12 2.6E-16 105.2 2.6 63 231-297 84-146 (146)
50 2xsd_C POU domain, class 3, tr 99.1 7.6E-12 2.6E-16 107.3 1.6 66 231-300 96-161 (164)
51 3d1n_I POU domain, class 6, tr 99.1 1.3E-11 4.3E-16 103.7 2.8 61 231-295 90-150 (151)
52 1puf_B PRE-B-cell leukemia tra 99.1 7.4E-12 2.5E-16 93.1 1.1 65 234-299 1-65 (73)
53 1b72_B Protein (PBX1); homeodo 99.1 4.9E-12 1.7E-16 96.7 0.1 63 234-297 1-63 (87)
54 2dmn_A Homeobox protein TGIF2L 99.1 2.5E-11 8.6E-16 93.2 2.6 65 231-296 4-68 (83)
55 2hi3_A Homeodomain-only protei 99.1 1.2E-11 4.2E-16 92.3 -0.0 60 235-297 3-62 (73)
56 1lfb_A Liver transcription fac 99.1 2.3E-11 7.8E-16 97.4 1.5 66 232-301 7-93 (99)
57 2d5v_A Hepatocyte nuclear fact 99.1 3.5E-11 1.2E-15 101.7 2.7 65 231-299 94-158 (164)
58 1mnm_C Protein (MAT alpha-2 tr 99.1 4E-11 1.4E-15 92.2 2.3 63 232-295 25-87 (87)
59 2dmp_A Zinc fingers and homeob 99.1 9.9E-11 3.4E-15 91.1 4.4 57 239-299 18-74 (89)
60 3a03_A T-cell leukemia homeobo 99.1 1.5E-11 5.2E-16 87.6 -0.3 54 239-296 2-55 (56)
61 1uhs_A HOP, homeodomain only p 99.0 1.8E-11 6.1E-16 91.0 -0.1 59 236-297 3-61 (72)
62 2da6_A Hepatocyte nuclear fact 99.0 2.6E-11 8.7E-16 98.7 0.3 63 231-297 3-86 (102)
63 2ecb_A Zinc fingers and homeob 99.0 8.3E-11 2.8E-15 92.9 3.2 58 235-297 13-70 (89)
64 3l1p_A POU domain, class 5, tr 99.0 3.7E-11 1.3E-15 101.7 -0.5 61 232-296 94-154 (155)
65 1k61_A Mating-type protein alp 99.0 9.6E-11 3.3E-15 83.9 1.5 58 238-296 2-59 (60)
66 1le8_B Mating-type protein alp 99.0 1.8E-10 6.1E-15 88.1 2.7 64 234-298 2-65 (83)
67 2cqx_A LAG1 longevity assuranc 98.9 1.8E-10 6.2E-15 86.8 0.5 60 235-298 9-69 (72)
68 2e19_A Transcription factor 8; 98.8 7.1E-10 2.4E-14 81.9 1.6 54 239-296 8-61 (64)
69 2l9r_A Homeobox protein NKX-3. 98.8 2.4E-09 8.3E-14 80.7 2.6 57 240-300 10-66 (69)
70 3nau_A Zinc fingers and homeob 98.7 2.6E-09 8.9E-14 81.1 -0.1 51 241-295 11-61 (66)
71 1ic8_A Hepatocyte nuclear fact 98.6 3.6E-09 1.2E-13 93.7 -0.7 61 232-296 113-194 (194)
72 1x2m_A LAG1 longevity assuranc 98.6 1.1E-08 3.7E-13 76.8 1.3 53 243-298 9-61 (64)
73 3k2a_A Homeobox protein MEIS2; 98.6 9.4E-09 3.2E-13 76.1 0.7 60 239-299 3-62 (67)
74 2da7_A Zinc finger homeobox pr 98.6 1.2E-08 4.1E-13 78.7 1.2 46 243-292 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 98.5 4E-08 1.4E-12 89.2 2.2 59 231-293 139-218 (221)
76 1mh3_A Maltose binding-A1 home 98.3 7.5E-08 2.6E-12 87.4 1.0 57 234-294 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 97.6 7.4E-06 2.5E-10 65.1 0.2 57 239-296 10-66 (89)
78 2nzz_A Penetratin conjugated G 95.4 0.0012 4E-08 45.1 -1.9 18 281-298 2-19 (37)
79 2elh_A CG11849-PA, LD40883P; s 93.3 0.046 1.6E-06 41.1 2.7 47 234-289 16-62 (87)
80 2glo_A Brinker CG9653-PA; prot 91.9 0.045 1.5E-06 38.3 1.0 46 238-288 3-48 (59)
81 2jn6_A Protein CGL2762, transp 90.3 0.082 2.8E-06 39.7 1.1 45 238-290 3-48 (97)
82 1hlv_A CENP-B, major centromer 89.1 0.11 3.7E-06 40.6 0.9 48 237-291 4-51 (131)
83 2ofy_A Putative XRE-family tra 87.7 0.13 4.4E-06 37.2 0.5 50 238-290 3-52 (86)
84 2rn7_A IS629 ORFA; helix, all 87.1 0.21 7.1E-06 38.1 1.4 51 238-289 4-54 (108)
85 1tc3_C Protein (TC3 transposas 86.7 0.24 8.1E-06 31.2 1.3 43 239-290 4-46 (51)
86 1jko_C HIN recombinase, DNA-in 86.7 0.14 4.7E-06 33.1 0.1 42 240-290 5-46 (52)
87 1iuf_A Centromere ABP1 protein 79.8 0.51 1.7E-05 38.5 0.9 51 235-289 6-60 (144)
88 2ao9_A Phage protein; structur 79.2 0.19 6.6E-06 43.2 -1.9 56 235-291 18-74 (155)
89 4dyq_A Gene 1 protein; GP1, oc 78.9 0.16 5.4E-06 41.6 -2.4 42 239-289 11-53 (140)
90 1pdn_C Protein (PRD paired); p 78.4 0.86 2.9E-05 34.1 1.7 42 239-289 16-57 (128)
91 2k27_A Paired box protein PAX- 77.9 2 6.7E-05 34.6 3.9 44 239-291 24-67 (159)
92 1k78_A Paired box protein PAX5 76.1 1 3.6E-05 35.6 1.7 43 239-290 31-73 (149)
93 3bdn_A Lambda repressor; repre 75.6 0.49 1.7E-05 40.1 -0.4 51 239-290 5-55 (236)
94 1u78_A TC3 transposase, transp 75.1 1.3 4.4E-05 34.1 1.9 44 239-291 5-48 (141)
95 1je8_A Nitrate/nitrite respons 73.4 0.34 1.2E-05 35.9 -1.7 52 235-296 16-67 (82)
96 3kz3_A Repressor protein CI; f 69.0 0.42 1.4E-05 34.3 -2.0 49 241-290 2-50 (80)
97 2np3_A Putative TETR-family re 67.3 1.5 5.2E-05 35.1 0.7 47 242-289 28-74 (212)
98 1ity_A TRF1; helix-turn-helix, 63.0 11 0.00038 27.2 4.6 25 233-257 5-29 (69)
99 2qko_A Possible transcriptiona 61.3 1.6 5.6E-05 35.0 -0.1 47 242-289 26-72 (215)
100 1lmb_3 Protein (lambda repress 60.2 4.3 0.00015 29.2 2.0 42 240-289 6-54 (92)
101 1fex_A TRF2-interacting telome 57.4 6.6 0.00023 28.3 2.6 47 238-285 2-49 (59)
102 3bru_A Regulatory protein, TET 56.4 1.5 5.2E-05 34.9 -1.1 46 243-289 29-74 (222)
103 1p4w_A RCSB; solution structur 56.0 2.1 7.2E-05 33.3 -0.3 48 238-295 32-79 (99)
104 3c57_A Two component transcrip 55.7 2.9 9.9E-05 31.6 0.4 50 239-298 26-75 (95)
105 1u78_A TC3 transposase, transp 55.1 4.6 0.00016 30.9 1.5 45 239-291 59-105 (141)
106 1fse_A GERE; helix-turn-helix 55.0 1.2 4.1E-05 30.9 -1.7 49 238-296 9-57 (74)
107 3qqa_A CMER; alpha-helical, he 55.0 2.1 7.2E-05 33.8 -0.5 47 242-289 17-63 (216)
108 3ej9_B Beta-subunit of trans-3 54.2 14 0.00049 28.3 4.0 37 241-291 11-47 (70)
109 3dcf_A Transcriptional regulat 54.2 1.9 6.5E-05 34.0 -0.8 47 242-289 29-75 (218)
110 3g7r_A Putative transcriptiona 53.7 3.4 0.00012 33.6 0.6 47 242-289 33-79 (221)
111 2r1j_L Repressor protein C2; p 51.6 4.6 0.00016 26.9 0.9 34 247-288 8-41 (68)
112 2iai_A Putative transcriptiona 51.0 6.5 0.00022 32.1 1.8 28 262-289 47-74 (230)
113 3cwr_A Transcriptional regulat 51.0 2.4 8.1E-05 33.1 -0.8 51 238-289 10-61 (208)
114 2lci_A Protein OR36; structura 50.9 15 0.0005 30.4 3.9 33 245-277 63-99 (134)
115 2rnj_A Response regulator prot 49.5 1.1 3.8E-05 33.3 -2.8 51 237-297 26-76 (91)
116 3m20_A 4-oxalocrotonate tautom 49.3 24 0.0008 24.4 4.3 35 241-289 10-44 (62)
117 3m21_A Probable tautomerase HP 49.2 21 0.00072 24.9 4.1 36 240-289 13-48 (67)
118 1zug_A Phage 434 CRO protein; 49.1 5.3 0.00018 27.0 0.9 34 248-289 7-40 (71)
119 3q0w_A HTH-type transcriptiona 48.8 2.9 0.0001 34.4 -0.6 47 242-289 42-88 (236)
120 1x3u_A Transcriptional regulat 48.8 1 3.5E-05 31.9 -2.9 48 239-296 15-62 (79)
121 1x41_A Transcriptional adaptor 48.1 16 0.00053 25.8 3.2 24 234-257 4-27 (60)
122 3kkd_A Transcriptional regulat 47.8 6.3 0.00022 32.1 1.3 46 243-289 34-79 (237)
123 3on2_A Probable transcriptiona 47.6 6.6 0.00022 30.3 1.3 45 244-289 12-56 (199)
124 3nrg_A TETR family transcripti 47.6 4.3 0.00015 32.0 0.2 49 240-289 9-57 (217)
125 2ba3_A NIKA; dimer, bacterial 47.5 11 0.00038 25.5 2.3 27 233-259 14-40 (51)
126 3hug_A RNA polymerase sigma fa 47.2 0.97 3.3E-05 33.6 -3.4 46 240-295 37-83 (92)
127 2p7v_B Sigma-70, RNA polymeras 46.8 2.2 7.5E-05 29.9 -1.4 53 240-297 5-57 (68)
128 3bni_A Putative TETR-family tr 46.5 2.6 8.8E-05 34.6 -1.3 47 242-289 41-87 (229)
129 3sjm_A Telomeric repeat-bindin 45.9 13 0.00043 27.0 2.5 23 235-257 8-30 (64)
130 3mvp_A TETR/ACRR transcription 45.6 2.6 8.9E-05 33.2 -1.3 47 242-289 24-70 (217)
131 1r69_A Repressor protein CI; g 45.5 6.5 0.00022 26.4 0.9 34 248-289 5-38 (69)
132 3gzi_A Transcriptional regulat 45.2 4.4 0.00015 32.1 -0.0 46 243-289 16-61 (218)
133 2v57_A TETR family transcripti 43.9 4 0.00014 31.7 -0.5 44 243-289 13-56 (190)
134 1adr_A P22 C2 repressor; trans 43.4 7.3 0.00025 26.6 0.9 19 269-287 22-40 (76)
135 2oer_A Probable transcriptiona 43.3 3.8 0.00013 33.1 -0.7 55 234-289 14-68 (214)
136 3mb2_B 4-oxalocrotonate tautom 43.1 39 0.0014 26.0 5.0 40 234-290 9-48 (72)
137 4fcy_A Transposase; rnaseh, DD 42.6 9.7 0.00033 36.1 1.9 44 240-287 22-74 (529)
138 2k27_A Paired box protein PAX- 42.5 23 0.00078 28.2 3.8 54 238-295 81-141 (159)
139 3kz9_A SMCR; transcriptional r 42.4 6.4 0.00022 30.5 0.5 46 243-289 16-61 (206)
140 1dj7_A Ferredoxin thioredoxin 42.4 32 0.0011 28.5 4.7 31 242-273 7-41 (117)
141 2cki_A Ulilysin; metalloprotea 42.3 13 0.00046 33.7 2.6 22 236-259 236-257 (262)
142 3f1b_A TETR-like transcription 42.0 5.5 0.00019 30.9 0.1 46 243-289 13-58 (203)
143 2o8x_A Probable RNA polymerase 41.6 1.6 5.5E-05 30.0 -2.8 48 240-296 15-62 (70)
144 2iu5_A DHAS, YCEG, HTH-type dh 40.8 6.8 0.00023 30.9 0.4 47 242-289 11-57 (195)
145 2k9q_A Uncharacterized protein 40.8 8.7 0.0003 26.9 0.9 15 265-279 44-58 (77)
146 3kkc_A TETR family transcripti 40.0 3.7 0.00013 31.6 -1.2 46 243-289 11-56 (177)
147 2dim_A Cell division cycle 5-l 39.4 27 0.00091 25.1 3.4 22 236-257 7-28 (70)
148 3b7h_A Prophage LP1 protein 11 39.1 9.5 0.00033 26.2 0.9 20 269-288 24-43 (78)
149 3clo_A Transcriptional regulat 39.0 4.1 0.00014 35.5 -1.2 50 237-296 194-243 (258)
150 2x48_A CAG38821; archeal virus 38.6 7 0.00024 25.9 0.2 39 240-287 13-53 (55)
151 1y7y_A C.AHDI; helix-turn-heli 38.5 10 0.00035 25.7 1.0 21 268-288 29-49 (74)
152 3ulq_B Transcriptional regulat 38.1 8.7 0.0003 29.0 0.6 48 238-295 27-74 (90)
153 1gyx_A YDCE, B1461, hypothetic 38.0 36 0.0012 24.4 4.0 37 240-290 11-47 (76)
154 3him_A Probable transcriptiona 37.7 7.2 0.00025 30.3 0.1 46 243-289 15-60 (211)
155 2zcx_A SCO7815, TETR-family tr 37.6 5.6 0.00019 33.1 -0.6 46 243-289 22-67 (231)
156 1s7o_A Hypothetical UPF0122 pr 37.3 2.3 8E-05 33.7 -2.8 47 239-294 21-67 (113)
157 2ys9_A Homeobox and leucine zi 36.9 9.4 0.00032 29.3 0.6 36 247-286 19-54 (70)
158 1pb6_A Hypothetical transcript 36.7 4.4 0.00015 31.8 -1.3 47 242-289 16-62 (212)
159 3ccy_A Putative TETR-family tr 36.5 9.1 0.00031 30.3 0.5 45 243-288 13-57 (203)
160 1j9i_A GPNU1 DBD;, terminase s 36.4 6.9 0.00024 27.7 -0.2 23 268-290 5-27 (68)
161 2hku_A A putative transcriptio 36.0 3.5 0.00012 33.0 -2.0 45 243-289 19-63 (215)
162 3lwj_A Putative TETR-family tr 35.8 7.4 0.00025 30.4 -0.1 46 243-289 11-56 (202)
163 3bs3_A Putative DNA-binding pr 35.8 5.7 0.0002 27.2 -0.7 18 263-280 50-67 (76)
164 2rae_A Transcriptional regulat 35.7 6.7 0.00023 30.9 -0.4 46 244-290 17-62 (207)
165 2ef8_A C.ECOT38IS, putative tr 35.5 12 0.0004 26.1 0.9 22 268-289 26-47 (84)
166 3o39_A Periplasmic protein rel 34.3 22 0.00075 28.6 2.5 17 239-255 89-105 (108)
167 3mb2_A 4-oxalocrotonate tautom 34.0 56 0.0019 23.1 4.4 35 241-289 12-46 (72)
168 1w0t_A Telomeric repeat bindin 33.3 48 0.0017 22.5 3.8 20 238-257 2-21 (53)
169 2xi8_A Putative transcription 32.9 6.3 0.00022 26.1 -0.8 18 263-280 41-58 (66)
170 2kpj_A SOS-response transcript 32.9 9.4 0.00032 27.9 0.0 18 263-280 49-66 (94)
171 1p2x_A RNG2 protein, RAS GTPas 32.7 31 0.001 29.0 3.2 23 240-262 133-155 (159)
172 2ict_A Antitoxin HIGA; helix-t 32.7 13 0.00044 27.0 0.8 19 262-280 47-65 (94)
173 2d9a_A B-MYB, MYB-related prot 32.5 49 0.0017 22.9 3.8 23 235-257 5-27 (60)
174 1hlv_A CENP-B, major centromer 32.3 99 0.0034 23.5 5.9 56 233-290 65-127 (131)
175 3abf_A 4-oxalocrotonate tautom 32.1 73 0.0025 21.3 4.6 36 241-290 12-47 (64)
176 3g1o_A Transcriptional regulat 32.0 8.1 0.00028 32.0 -0.5 47 242-289 41-87 (255)
177 1tty_A Sigma-A, RNA polymerase 31.4 4 0.00014 30.2 -2.2 52 240-296 18-69 (87)
178 1l0o_C Sigma factor; bergerat 31.2 10 0.00035 30.9 0.0 46 240-294 198-243 (243)
179 3mzy_A RNA polymerase sigma-H 30.8 2.4 8.3E-05 32.6 -3.6 46 240-295 109-154 (164)
180 2qib_A TETR-family transcripti 30.8 6.7 0.00023 32.2 -1.2 46 243-289 12-57 (231)
181 2a6c_A Helix-turn-helix motif; 30.8 13 0.00045 26.6 0.6 18 263-280 59-76 (83)
182 2np5_A Transcriptional regulat 30.6 8.6 0.0003 30.7 -0.5 27 262-288 26-52 (203)
183 3s5r_A Transcriptional regulat 30.4 6 0.0002 31.2 -1.5 45 244-289 10-54 (216)
184 2fq4_A Transcriptional regulat 30.1 11 0.00037 29.8 -0.0 46 243-289 11-56 (192)
185 2q0o_A Probable transcriptiona 29.9 5.7 0.0002 33.9 -1.8 48 238-295 173-220 (236)
186 2fnf_X Putative RAS effector N 29.5 24 0.00083 26.0 1.8 29 94-128 36-66 (72)
187 3i5g_B Myosin regulatory light 29.2 1.2E+02 0.0041 23.8 6.1 41 238-278 7-48 (153)
188 2b5a_A C.BCLI; helix-turn-heli 29.2 14 0.00049 25.2 0.5 20 269-288 27-46 (77)
189 1g3n_C V-cyclin; cyclin-depend 29.2 95 0.0032 27.0 5.9 42 240-281 125-168 (257)
190 3knw_A Putative transcriptiona 29.1 8.7 0.0003 30.1 -0.7 47 242-289 12-58 (212)
191 2rgt_A Fusion of LIM/homeobox 29.0 1.6 5.4E-05 36.1 -5.3 24 232-255 134-157 (169)
192 1hfo_A Migration inhibitory fa 29.0 71 0.0024 24.1 4.5 36 241-290 67-102 (113)
193 1uiz_A MIF, macrophage migrati 29.0 71 0.0024 24.2 4.5 36 241-290 68-103 (115)
194 3lhq_A Acrab operon repressor 28.8 9 0.00031 29.9 -0.7 46 243-289 13-58 (220)
195 3fiw_A Putative TETR-family tr 28.7 17 0.00056 30.2 0.9 50 234-289 18-69 (211)
196 2aje_A Telomere repeat-binding 28.7 46 0.0016 26.7 3.5 27 231-257 6-32 (105)
197 3lay_A Zinc resistance-associa 28.5 59 0.002 28.2 4.3 40 238-277 65-124 (175)
198 3aqt_A Bacterial regulatory pr 28.3 7.2 0.00025 32.4 -1.4 46 243-289 45-90 (245)
199 2os5_A Acemif; macrophage migr 28.1 76 0.0026 24.4 4.6 36 241-290 68-103 (119)
200 1rfh_A RAS association (ralgds 28.1 17 0.0006 25.7 0.8 27 94-126 23-51 (59)
201 3he0_A Transcriptional regulat 28.0 13 0.00045 28.7 0.1 28 262-289 28-55 (196)
202 3vp5_A Transcriptional regulat 27.8 8.7 0.0003 30.5 -1.0 48 240-288 8-55 (189)
203 2l49_A C protein; P2 bacteriop 27.8 20 0.0007 25.9 1.1 17 263-279 44-62 (99)
204 1t8t_A Heparan sulfate D-gluco 27.5 89 0.0031 26.5 5.3 34 234-278 233-266 (271)
205 2w96_A G1/S-specific cyclin-D1 27.4 81 0.0028 27.7 5.2 41 240-280 131-173 (271)
206 3ry0_A Putative tautomerase; o 27.3 75 0.0026 21.8 4.0 35 241-289 11-45 (65)
207 1nee_A EIF-2-beta, probable tr 27.2 16 0.00056 30.7 0.6 15 111-125 121-135 (138)
208 1ku3_A Sigma factor SIGA; heli 26.8 5.2 0.00018 28.3 -2.2 50 240-294 10-59 (73)
209 3kyd_D Small ubiquitin-related 26.8 44 0.0015 27.2 3.1 27 267-293 66-92 (115)
210 3frq_A Repressor protein MPHR( 26.8 6.9 0.00023 30.7 -1.7 43 246-289 10-52 (195)
211 3omt_A Uncharacterized protein 26.5 10 0.00036 26.1 -0.6 19 262-280 47-65 (73)
212 2cu7_A KIAA1915 protein; nucle 26.4 74 0.0025 22.9 4.0 24 235-258 6-29 (72)
213 3b64_A Macrophage migration in 26.3 65 0.0022 24.4 3.8 39 241-294 68-106 (112)
214 1xsv_A Hypothetical UPF0122 pr 26.3 3.5 0.00012 32.4 -3.5 48 239-295 24-71 (113)
215 1k81_A EIF-2-beta, probable tr 26.2 15 0.0005 24.3 0.1 13 112-124 20-32 (36)
216 2elk_A SPCC24B10.08C protein; 26.0 63 0.0022 22.5 3.4 20 238-257 9-28 (58)
217 3rjz_A N-type ATP pyrophosphat 25.9 44 0.0015 29.9 3.2 45 240-285 99-148 (237)
218 2k9i_A Plasmid PRN1, complete 25.9 43 0.0015 22.2 2.4 42 233-274 8-49 (55)
219 2zb9_A Putative transcriptiona 25.8 8 0.00027 30.8 -1.5 46 243-289 22-67 (214)
220 3ej9_A Alpha-subunit of trans- 25.7 84 0.0029 22.7 4.2 35 241-289 12-46 (76)
221 1dzk_A PIG OBP, odorant-bindin 25.6 48 0.0016 25.9 3.0 21 240-260 123-143 (157)
222 3hta_A EBRA repressor; TETR fa 25.6 21 0.00071 29.0 0.9 44 244-288 28-71 (217)
223 3rd3_A Probable transcriptiona 25.4 7.9 0.00027 29.9 -1.6 46 243-289 9-54 (197)
224 2hzq_A Apolipoprotein D, APO-D 25.1 59 0.002 26.2 3.6 22 241-262 133-154 (174)
225 3mnl_A KSTR, transcriptional r 24.9 3.4 0.00011 32.3 -3.9 46 243-289 19-64 (203)
226 3loc_A HTH-type transcriptiona 24.8 5.1 0.00017 31.4 -2.8 45 243-288 17-61 (212)
227 2wiu_B HTH-type transcriptiona 24.7 23 0.00078 24.9 0.9 19 263-281 52-70 (88)
228 1umq_A Photosynthetic apparatu 24.6 22 0.00077 27.0 0.9 36 244-287 41-76 (81)
229 1l3l_A Transcriptional activat 24.5 6.8 0.00023 33.4 -2.3 48 238-295 171-218 (234)
230 3cw2_K Translation initiation 24.4 17 0.00059 30.6 0.2 15 111-125 122-136 (139)
231 3e7l_A Transcriptional regulat 24.1 24 0.00082 24.7 0.9 35 245-287 20-54 (63)
232 4ich_A Transcriptional regulat 24.0 18 0.0006 31.5 0.2 51 238-289 114-164 (311)
233 2hxo_A Putative TETR-family tr 24.0 34 0.0012 28.9 2.0 51 234-289 9-60 (237)
234 3b81_A Transcriptional regulat 24.0 11 0.00037 29.3 -1.0 46 243-289 10-55 (203)
235 2opa_A Probable tautomerase YW 23.9 1E+02 0.0034 20.4 4.0 35 242-290 12-46 (61)
236 2qtq_A Transcriptional regulat 23.7 9.2 0.00031 29.9 -1.5 44 245-289 17-60 (213)
237 3col_A Putative transcription 23.6 12 0.0004 28.8 -0.9 46 243-289 9-54 (196)
238 1a04_A Nitrate/nitrite respons 23.5 14 0.00049 29.7 -0.4 48 239-296 153-200 (215)
239 1faq_A RAF-1; transferase, ser 23.4 32 0.0011 23.0 1.4 27 95-128 16-44 (52)
240 1k78_A Paired box protein PAX5 23.2 35 0.0012 26.7 1.8 50 238-291 88-144 (149)
241 3lsj_A DEST; transcriptional r 23.2 18 0.0006 28.8 0.0 47 243-289 10-56 (220)
242 1otf_A 4-oxalocrotonate tautom 23.1 1E+02 0.0036 20.3 4.0 35 242-290 12-46 (62)
243 1u5t_A Appears to BE functiona 23.1 71 0.0024 28.9 4.0 33 247-279 41-75 (233)
244 2xcz_A Possible ATLS1-like lig 23.0 78 0.0027 24.0 3.7 36 241-290 68-103 (115)
245 2jxx_A Nfatc2-interacting prot 23.0 51 0.0017 25.9 2.7 25 267-291 52-76 (97)
246 3vib_A MTRR; helix-turn-helix 22.9 13 0.00043 29.6 -0.9 46 243-289 9-54 (210)
247 3vk0_A NHTF, transcriptional r 22.5 24 0.00083 26.7 0.7 18 263-280 61-78 (114)
248 3s8q_A R-M controller protein; 22.4 23 0.00079 24.8 0.5 20 269-288 28-47 (82)
249 3itf_A Periplasmic adaptor pro 22.3 46 0.0016 27.9 2.5 19 237-255 115-133 (145)
250 1wm3_A Ubiquitin-like protein 22.2 54 0.0018 23.4 2.5 28 265-292 25-52 (72)
251 2d74_B Translation initiation 22.2 23 0.0008 30.1 0.6 15 111-125 123-137 (148)
252 2din_A Cell division cycle 5-l 22.1 97 0.0033 21.8 3.8 22 236-257 7-28 (66)
253 1guu_A C-MYB, MYB proto-oncoge 22.0 73 0.0025 21.3 3.0 20 238-257 3-22 (52)
254 3geu_A Intercellular adhesion 21.9 7.8 0.00027 30.1 -2.2 46 243-289 2-47 (189)
255 1gka_B Crustacyanin A2 subunit 21.9 50 0.0017 26.3 2.5 22 240-261 138-159 (174)
256 3e7q_A Transcriptional regulat 21.8 2.6 8.8E-05 33.1 -5.1 46 243-289 13-58 (215)
257 2g2k_A EIF-5, eukaryotic trans 21.8 23 0.00079 30.9 0.5 16 111-126 117-132 (170)
258 1v74_A Colicin D; colicin D - 21.7 64 0.0022 26.5 3.1 37 238-274 7-43 (107)
259 3t76_A VANU, transcriptional r 21.7 28 0.00096 26.2 0.9 19 263-281 63-81 (88)
260 3o22_A Prostaglandin-H2 D-isom 21.6 64 0.0022 25.5 3.1 21 240-260 126-146 (162)
261 1p5s_A RAS GTPase-activating-l 21.6 62 0.0021 28.3 3.2 24 239-262 176-199 (203)
262 3v6g_A Probable transcriptiona 21.3 15 0.0005 30.0 -0.8 43 245-288 15-57 (208)
263 3mf7_A CIS-3-chloroacrylic aci 21.1 83 0.0028 26.1 3.8 34 240-287 11-44 (149)
264 3f6w_A XRE-family like protein 21.0 25 0.00084 24.6 0.4 18 270-287 32-49 (83)
265 2f2c_A Cyclin homolog, V-cycli 21.0 95 0.0032 26.9 4.3 42 240-281 126-169 (254)
266 3a4r_A Nfatc2-interacting prot 21.0 63 0.0022 23.6 2.7 25 267-291 34-58 (79)
267 3cbc_A Neutrophil gelatinase-a 20.9 65 0.0022 26.3 3.1 21 240-260 163-183 (198)
268 2e9h_A EIF-5, eukaryotic trans 20.8 23 0.00079 30.5 0.3 17 111-127 124-140 (157)
269 1w98_B Cyclin E, G1/S-specific 20.8 1.7E+02 0.0057 26.0 5.9 41 240-280 125-167 (283)
270 3qbm_A TETR transcriptional re 20.8 16 0.00053 28.2 -0.7 46 243-289 6-51 (199)
271 1wdc_C Scallop myosin; calcium 20.8 64 0.0022 24.1 2.8 40 239-278 1-43 (156)
272 3c2b_A Transcriptional regulat 20.7 9.6 0.00033 30.3 -2.0 45 244-289 15-59 (221)
273 2q24_A Putative TETR family tr 20.6 11 0.00036 29.7 -1.8 42 246-289 17-58 (194)
274 1bj7_A D 2; allergen, lipocali 20.5 70 0.0024 25.1 3.1 22 240-261 122-143 (156)
275 1rp3_A RNA polymerase sigma fa 20.5 8 0.00027 31.6 -2.6 48 239-295 186-233 (239)
276 3ppb_A Putative TETR family tr 20.5 11 0.00038 28.9 -1.6 43 246-289 11-53 (195)
277 1jhf_A LEXA repressor; LEXA SO 20.3 43 0.0015 27.7 1.9 42 240-287 3-48 (202)
278 2rek_A Putative TETR-family tr 20.3 9 0.00031 30.1 -2.2 44 244-289 16-59 (199)
279 2yus_A SWI/SNF-related matrix- 20.1 1.9E+02 0.0064 21.6 5.2 34 235-276 15-48 (79)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=1.5e-21 Score=150.75 Aligned_cols=67 Identities=60% Similarity=1.024 Sum_probs=63.5
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
....+||.||.||.+|++.|++|++++||+.+++|..++++||.+|||++.+|||||||+|+++++.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 4456899999999999999999999999999999999999999999999999999999999999863
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.2e-20 Score=145.06 Aligned_cols=67 Identities=51% Similarity=0.927 Sum_probs=63.4
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
....+||.||+||.+|++.|+.+++++|||.+++|..++++||.+|||++.+|||||||+|+++++.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 3456899999999999999999999999999999999999999999999999999999999999864
No 3
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-16 Score=118.89 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....+||.||.||.+|++.|+.++++-+|..++++..+++++|.++||+..+++|||+|+|++++|....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 3456799999999999999999999988999999999999999999999999999999999998876443
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-15 Score=114.23 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=60.4
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....+||.||.||.+|++.|+.++++ .++++..++++||.++||+..+++|||+|+|++++|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL----DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 34567999999999999999998887 7999999999999999999999999999999999987654
No 5
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=4.9e-15 Score=114.22 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=57.5
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
+.+.+||.||.||.||+..|+.|++.| ..++|++++++++.++||+++|+||||||.|...+..
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~---~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDV---GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 345789999999999999999988886 4899999999999999999999999999999876543
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-15 Score=112.92 Aligned_cols=62 Identities=24% Similarity=0.460 Sum_probs=58.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+.++++ .++++..++++||.++||+..+++|||+|+|++++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAI----NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 3457999999999999999998888 7999999999999999999999999999999998876
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=5.3e-14 Score=104.15 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA----NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 4567999999999999999998887 7899999999999999999999999999999999987653
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.5e-14 Score=105.91 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++++|....
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEK----QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 4457899999999999999998888 7899999999999999999999999999999999987653
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.8e-14 Score=103.95 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~s 68 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCC
Confidence 4467999999999999999998887 7899999999999999999999999999999999987654
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-14 Score=104.32 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=59.6
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
.+..||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQE----TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 3457899999999999999998888 7999999999999999999999999999999999887653
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=8.7e-14 Score=102.60 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=60.2
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....+||.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|.|++.+|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDA----NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 34567999999999999999998888 7899999999999999999999999999999999987653
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=103.85 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
....+||.||.||.+|++.|+.++++ .++++..++++++.++||+..+++|||+|+|++++|+.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQR----QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567999999999999999998887 79999999999999999999999999999999998875
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.3e-13 Score=104.39 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=59.2
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAK----TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3467999999999999999998888 7899999999999999999999999999999998877543
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=102.16 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=59.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
....||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDI----NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4467999999999999999998887 789999999999999999999999999999999988754
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=1.2e-13 Score=102.18 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
.+..||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|....
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFET----QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 4457889999999999999998887 7999999999999999999999999999999998876543
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.35 E-value=1.3e-13 Score=99.52 Aligned_cols=60 Identities=22% Similarity=0.415 Sum_probs=52.5
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
.+||.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|.|++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE----NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 46899999999999999998887 7999999999999999999999999999999998874
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.34 E-value=3.2e-13 Score=98.77 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
.+||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA----NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 46899999999999999998888 79999999999999999999999999999999998875
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.34 E-value=2.1e-13 Score=98.60 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
.+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK----QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 46899999999999999998887 7899999999999999999999999999999999885
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.1e-13 Score=104.96 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=57.5
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 3467999999999999999998887 7899999999999999999999999999999998775
No 20
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=4.8e-13 Score=99.19 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=58.7
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
...+||.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|+|++++|+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQK----THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4467899999999999999998887 689999999999999999999999999999999988753
No 21
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.3e-13 Score=99.31 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
...++.||+||.+|++.|+.++++ .++++..++++++.++||+...++|||+|.|++.+|+...
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCR----NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHH----SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 345667999999999999998887 7999999999999999999999999999999999887544
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.31 E-value=9.3e-13 Score=98.54 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYAT----NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3456899999999999999998888 7899999999999999999999999999999999887544
No 23
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.31 E-value=1.9e-13 Score=99.29 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
+.||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF----NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 46899999999999999998887 78999999999999999999999999999999988753
No 24
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.31 E-value=4.6e-13 Score=100.93 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++.+|+
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQ----QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 3457889999999999999998887 7899999999999999999999999999999998765
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.30 E-value=3.8e-13 Score=102.62 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
..+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++.+|...
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 457899999999999999998888 789999999999999999999999999999999988753
No 26
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.29 E-value=4.6e-13 Score=104.89 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 230 FVLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 230 ~~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
....+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++++|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK----QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34567999999999999999998888 799999999999999999999999999999999887643
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.29 E-value=3.6e-13 Score=99.53 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++.+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 6899999999999999998887 7899999999999999999999999999999998876543
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=4.2e-13 Score=95.48 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=53.6
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ----KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 688999999999999998887 789999999999999999999999999999998764
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.28 E-value=6.1e-13 Score=93.82 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=53.6
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
++||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++.|
T Consensus 1 g~rr~Rt~~t~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 1 GRRKPRVLFSQAQVYELERRFKQ----QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46899999999999999998876 78999999999999999999999999999998754
No 30
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.27 E-value=4.5e-13 Score=103.26 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
...||.||.||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++.+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 356899999999999999998887 78999999999999999999999999999999998864
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.27 E-value=5.7e-13 Score=95.77 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=54.0
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK----ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 689999999999999998888 7899999999999999999999999999999998765
No 32
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.27 E-value=1.2e-12 Score=98.57 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
....+|.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|+|++.+|.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4457899999999999999998887 7899999999999999999999999999999998764
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.26 E-value=2.2e-13 Score=100.35 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
++||.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|.|++++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 57999999999999999998887 7899999999999999999999999999999998876543
No 34
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=95.34 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQEPA 301 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~~~ 301 (305)
.++.||.||.+|++.|+.++++ .++++...+++++.++||+...+||||+|+|++.+|+.....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK----NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 4788999999999999998887 689999999999999999999999999999999998765443
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.26 E-value=1.1e-12 Score=96.67 Aligned_cols=63 Identities=11% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQEP 300 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~~ 300 (305)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++.+|.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ----QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 6899999999999999998887 78999999999999999999999999999999988875443
No 36
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.26 E-value=6.5e-13 Score=100.76 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=56.5
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFER----TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 3457899999999999999998887 7899999999999999999999999999999998875
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.25 E-value=1e-12 Score=96.37 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
.||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|+...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3789999999999999998877 7899999999999999999999999999999999887654
No 38
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.25 E-value=7.3e-13 Score=97.73 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=55.6
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++.+|.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 5899999999999999998887 7899999999999999999999999999999998765
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=101.81 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=55.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
....+|.||.||.+|++.|+.++++ .++++..++++++.++||+...+||||+|+|.++||..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4456789999999999999998887 78999999999999999999999999999999998864
No 40
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.23 E-value=1.8e-12 Score=93.99 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
+.+|.||.||.+|++.|+.++.. ....++++..+.+++|.++||+...++|||+|.|.+.+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-cccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45889999999999999997721 1127899999999999999999999999999999999874
No 41
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.3e-12 Score=102.06 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------CCCceEEEecccccccCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVG---------------VKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiG---------------V~r~V~KVWmhNnK~~~~k 295 (305)
...+||.||.||.+|++.|+.++++ .++++..++++++.++| |+...++|||+|+|++.+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998888 79999999999999999 9999999999999999877
Q ss_pred CC
Q 021941 296 NK 297 (305)
Q Consensus 296 K~ 297 (305)
+.
T Consensus 80 ~~ 81 (95)
T 2cuf_A 80 RA 81 (95)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 42
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.20 E-value=3e-12 Score=108.80 Aligned_cols=62 Identities=13% Similarity=0.316 Sum_probs=54.1
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+++|||+|+|+++||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFME----NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3467999999999999999998888 7999999999999999999999999999999999886
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.6e-12 Score=94.88 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=54.6
Q ss_pred ccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
+.|++||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++.+|+...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ----NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 45678999999999998888 7999999999999999999999999999999998877543
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.20 E-value=2.8e-12 Score=92.02 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
.++|.||.||.+|++.|+.+++. .++++..++++++.++||+...++|||+|.|++.+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46899999999999999998887 68999999999999999999999999999998764
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=1.3e-12 Score=102.56 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
...||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++.+|+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 457899999999999999998887 78999999999999999999999999999999988753
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=3.3e-12 Score=98.86 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred ccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
+.|++||.+|++.|+..+++ .++++..++++++.++||++.++||||+|+|.++||..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~----~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ----CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 34678999999999998877 79999999999999999999999999999999988764
No 47
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.18 E-value=3.9e-12 Score=91.41 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=49.2
Q ss_pred cCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 237 FRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 237 ~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR----THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 3799999999999998887 78999999999999999999999999999999998864
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=7.9e-12 Score=92.92 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
....||.||.||.+|++.|+.+++. -+..++++..+.+++|.++||+...++|||+|.|.+.+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQ-HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3457899999999999999996654 1345899999999999999999999999999999999887654
No 49
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.16 E-value=7.7e-12 Score=105.16 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=55.2
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+++|||+|+|+++||+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGE----HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 3457889999999999999998888 78999999999999999999999999999999999863
No 50
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.14 E-value=7.6e-12 Score=107.29 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=51.6
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQEP 300 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~~ 300 (305)
...+||.||.||.+|++.|+.++++ .++++..++++++.++||+..+++|||+|+|+++||+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLK----CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ----------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred cccCCCCceeccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 4567889999999999999998888 79999999999999999999999999999999999886543
No 51
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=103.72 Aligned_cols=61 Identities=21% Similarity=0.408 Sum_probs=57.0
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+++|||+|+|++.||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEK----NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467889999999999999998888 799999999999999999999999999999999887
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.13 E-value=7.4e-12 Score=93.09 Aligned_cols=65 Identities=14% Similarity=0.272 Sum_probs=56.3
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
.||.||.||.+|++.|+.++.. ....++++..+++++|.++||+...++|||+|.|.+.+|+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 3789999999999999997721 1127899999999999999999999999999999998877543
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.13 E-value=4.9e-12 Score=96.70 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
.||.||.||.+|++.|+.++.. ....++++..++++++.++||+...++|||+|.|.+++|+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~-h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHT-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 3789999999999999997731 12378999999999999999999999999999999988764
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=93.21 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+||.||.||.+|++.|+++++. -+..++++..+.++++.++||+...|+|||+|.|.+.+|+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 4567899999999999999996654 2345899999999999999999999999999999998764
No 55
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.07 E-value=1.2e-11 Score=92.25 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=53.5
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
++-||.||.+|++.|+.++++. .++++...+++++.++||+...++|||+|+|++.+|+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4668999999999999977731 48899999999999999999999999999999987764
No 56
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.07 E-value=2.3e-11 Score=97.44 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHH------------------hC---CCCceEEEeccccc
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAE------------------VG---VKRHVFKVWMHNNK 290 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~e------------------iG---V~r~V~KVWmhNnK 290 (305)
..+||.||.||.+|++.|+.++++ .+++|...+++++.+ +| |+...++|||+|+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 456899999999999999998887 799999999999999 89 99999999999999
Q ss_pred ccCCCCCCCCC
Q 021941 291 NNTVKNKQEPA 301 (305)
Q Consensus 291 ~~~~kK~~~~~ 301 (305)
++.++|.....
T Consensus 83 ~k~k~k~~~~~ 93 (99)
T 1lfb_A 83 KEEAFRHKLAM 93 (99)
T ss_dssp HTTSCCC----
T ss_pred HHHHHhchhhh
Confidence 99888765443
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.07 E-value=3.5e-11 Score=101.66 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|.+.+|....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE----NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 3457999999999999999998887 6999999999999999999999999999999999987543
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.06 E-value=4e-11 Score=92.16 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
..++|.||.||.+|++.|+.++++ .+..++++..++++++.++||+...++|||+|.|.++|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345667999999999999996654 455689999999999999999999999999999998763
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.9e-11 Score=91.09 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
.+||.+|++.|+.++++ .++++..++++++.++||+...++|||+|+|++.+++...
T Consensus 18 k~~t~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK----SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccCCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 45999999999998888 7999999999999999999999999999999998776543
No 60
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.05 E-value=1.5e-11 Score=87.56 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
|.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR----QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 78999999999998887 7899999999999999999999999999999998774
No 61
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.05 E-value=1.8e-11 Score=90.99 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=52.8
Q ss_pred ccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
+.||.||.+|++.|+.++++. .++++...+++++.++||+...++|||+|+|++.+|+.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 568999999999999987731 48899999999999999999999999999999987764
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.6e-11 Score=98.65 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=57.5
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHh---------------------CCCCceEEEecccc
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEV---------------------GVKRHVFKVWMHNN 289 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~ei---------------------GV~r~V~KVWmhNn 289 (305)
+.++||.||+||.+|+..|+.++++ .+++|..++++++.++ +|+..+++|||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~----~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 4568999999999999999999888 7899999999999999 79999999999999
Q ss_pred cccCCCCC
Q 021941 290 KNNTVKNK 297 (305)
Q Consensus 290 K~~~~kK~ 297 (305)
|++.+++.
T Consensus 79 R~k~kr~~ 86 (102)
T 2da6_A 79 RKEEAFRQ 86 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987763
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.03 E-value=8.3e-11 Score=92.93 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=52.3
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
+++| .||.+|++.|+..++. .++++...+++++.++||++..+||||+|+|.+++|+.
T Consensus 13 ~k~k-~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFK-EKTAEQLRVLQASFLN----SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCC-CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhc-cCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 4455 8999999999997777 79999999999999999999999999999999987753
No 64
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.99 E-value=3.7e-11 Score=101.74 Aligned_cols=61 Identities=20% Similarity=0.374 Sum_probs=56.0
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
..+||.||.||.+|+..|+.++++ .++++...+++++.++||+..++||||+|+|+++||-
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK----SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 467899999999999999997775 7899999999999999999999999999999998873
No 65
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.98 E-value=9.6e-11 Score=83.92 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=51.7
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
||.||.+|++.|+.++++ .+..++++..+++++|.++||+...++|||+|.|.+.+|-
T Consensus 2 r~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 799999999999996664 3445899999999999999999999999999999988763
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.97 E-value=1.8e-10 Score=88.14 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
|++.||.||.+|++.|+.+++. .+..++++..++++++.++||+...++|||+|.|.+.+|...
T Consensus 2 K~krr~rft~~q~~~Le~~f~~-h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH-TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 4556777999999999996664 344589999999999999999999999999999999988743
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.90 E-value=1.8e-10 Score=86.75 Aligned_cols=60 Identities=8% Similarity=0.165 Sum_probs=53.4
Q ss_pred CccCcCCCHHHHHHHHHHH-HHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFA-EKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fA-EklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
.+-|+.||.+|++.|+.++ +. .++++...+++++.++||+...+||||+|+|+++++...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 4456778899999999988 77 689999999999999999999999999999999987653
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=7.1e-10 Score=81.93 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
..++.+|++.|+.++++ .++++...+++++.++||+..++||||+|+|++.++-
T Consensus 8 ~~p~~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYAL----NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 45679999999998877 7899999999999999999999999999999987764
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.76 E-value=2.4e-09 Score=80.68 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQEP 300 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~~ 300 (305)
..|.+|++.|+.++++ .++++...+++++.++||+...+||||+|+|++.+|+....
T Consensus 10 ~~t~~ql~~LE~~F~~----~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH----QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 5789999999998888 78999999999999999999999999999999999886543
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.66 E-value=2.6e-09 Score=81.11 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
-|.+|++.|+..+++ .++++..++++++..+||++..+||||+|+|.++++
T Consensus 11 ~~~~Ql~~LE~~F~~----~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ----SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHG----GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 368999999998877 799999999999999999999999999999998875
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.60 E-value=3.6e-09 Score=93.71 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=52.1
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------------CCCceEEEeccccc
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVG---------------------VKRHVFKVWMHNNK 290 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiG---------------------V~r~V~KVWmhNnK 290 (305)
..+||.||+||.+|++.|+.++++ .++++...+++++.+++ |+...++|||+|+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~----~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH----HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 456899999999999999998887 68999999999999999 99999999999999
Q ss_pred ccCCCC
Q 021941 291 NNTVKN 296 (305)
Q Consensus 291 ~~~~kK 296 (305)
.+.+.|
T Consensus 189 ~~~k~~ 194 (194)
T 1ic8_A 189 KEEAFR 194 (194)
T ss_dssp HHCC--
T ss_pred hhhhcC
Confidence 987754
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.58 E-value=1.1e-08 Score=76.78 Aligned_cols=53 Identities=6% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
++|++.|+.++.+ ...+++...+++++.++||+.+.+||||+|+|++.|+-.+
T Consensus 9 ~~~~~~LE~~F~~---~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~ 61 (64)
T 1x2m_A 9 AQPNAILEKVFTA---ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61 (64)
T ss_dssp SCHHHHHHHHHHT---TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSC
T ss_pred chHHHHHHHHHHH---cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCC
Confidence 6789999998843 1367999999999999999999999999999999876544
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.57 E-value=9.4e-09 Score=76.14 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=49.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQE 299 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~~ 299 (305)
-+||.+|++.|+++++. -+...+++..+.++++.++||+...++|||+|.|.+.+|....
T Consensus 3 g~f~~~~~~~L~~~f~~-h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQ-HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 37999999999997662 2447899999999999999999999999999999999887544
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-08 Score=78.71 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNN 292 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~ 292 (305)
.+|+..|+++++. ..+++.+++++++..+||+++|+||||+|+|+.
T Consensus 14 k~ql~~Lk~yF~~----n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM----NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4899999998777 799999999999999999999999999999974
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=89.21 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------------CCCceEEEecccc
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVG---------------------VKRHVFKVWMHNN 289 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiG---------------------V~r~V~KVWmhNn 289 (305)
..++||.||+||.+|+..|+.++++ .+++|...+++++.++| |+...++|||+|+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~----~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 4557999999999999999999888 78999999999999987 7888999999999
Q ss_pred cccC
Q 021941 290 KNNT 293 (305)
Q Consensus 290 K~~~ 293 (305)
|...
T Consensus 215 R~~~ 218 (221)
T 2h8r_A 215 RKEE 218 (221)
T ss_dssp HTTC
T ss_pred hhhh
Confidence 9764
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.35 E-value=7.5e-08 Score=87.44 Aligned_cols=57 Identities=9% Similarity=0.244 Sum_probs=53.3
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
.+|.|+.|+.+|++.|+..+++ .+++++..+++++.++||+++.+||||+|+|.++|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~----~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4799999999999999997777 68999999999999999999999999999998875
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.64 E-value=7.4e-06 Score=65.14 Aligned_cols=57 Identities=5% Similarity=0.101 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
-.|+.+|++.|++++.. -+.-.++++++.++++.++||+..-+++||+|.|.+.+|.
T Consensus 10 ~~l~~~~~~iL~~W~~~-h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYE-HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-TSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999996543 2445889999999999999999999999999999987653
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.35 E-value=0.0012 Score=45.07 Aligned_cols=18 Identities=22% Similarity=0.413 Sum_probs=15.4
Q ss_pred eEEEecccccccCCCCCC
Q 021941 281 VFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 281 V~KVWmhNnK~~~~kK~~ 298 (305)
-+||||+|+|+++||+..
T Consensus 2 QVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CTTTTTTCSHHHHTSSHH
T ss_pred CceeccHHHHHHHHHHhH
Confidence 368999999999999743
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=93.30 E-value=0.046 Score=41.05 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+|+.|.+||.|+|+.+....+. |. -+.++|.++||++.+|.-|+..-
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~--------s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE--------SKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC--------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC--------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567889999999888776643 32 37789999999999999998543
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=91.94 E-value=0.045 Score=38.31 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=34.3
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
|.+||.|.|+++.++.+. |. .....+.++|.+.||++.+|.-|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g~----s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DN----DCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CT----TTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CC----CcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 568999999998665543 21 11113789999999999999999754
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.35 E-value=0.082 Score=39.74 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=35.4
Q ss_pred CcCCCHHHHHHHHHHHHHh-CCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 238 RTKFTQEQKDKMMEFAEKV-GWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEkl-GWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
|.+||.|+|.++......- |+ .+.++|.+.||++.+|.-|+..-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~--------s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA--------SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS--------CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--------hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4689999999887765432 32 488999999999999999986543
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=89.07 E-value=0.11 Score=40.58 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=37.6
Q ss_pred cCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 021941 237 FRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 237 ~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
.|++||.|||.++...++.-|- ..+.++|.+.||++.+|.-|+.+...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~-------~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPD-------LRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTT-------SCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCC-------CcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 5789999999999998865221 23447889999999999999987543
No 83
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=87.69 E-value=0.13 Score=37.20 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=39.5
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
|+.+|.++.+.+..|+++|-...... -.++|+..+||++.++.-|..+.+
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 78899999999888888864333333 567999999999999988887654
No 84
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=87.13 E-value=0.21 Score=38.08 Aligned_cols=51 Identities=12% Similarity=0.382 Sum_probs=37.0
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
|.+||.|+|..+......-|+... .....+.++|.++||++.+|.-|..--
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~-s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYD-SQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccc-cccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 458999999998886644221100 112478999999999999999998753
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.70 E-value=0.24 Score=31.19 Aligned_cols=43 Identities=7% Similarity=0.276 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.+++.++++.+..+.+. |+ .+.++|.++||++.+|+-|+..-+
T Consensus 4 ~~l~~~~~~~i~~~~~~-g~--------s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL-NV--------SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT-TC--------CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 46889999887776533 33 477899999999999999987544
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=86.67 E-value=0.14 Score=33.05 Aligned_cols=42 Identities=10% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+|+.+|++.+..+.+. |+ .+.++|.++||++.+|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~-g~--------s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK-GH--------PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT-TC--------CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 6888888887776543 43 468899999999999999997544
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=79.85 E-value=0.51 Score=38.53 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=36.4
Q ss_pred CccCcCCCHHHHHHHHHHH-HHhCCccCCCCH-HHHHHHHHHh--CCCCceEEEecccc
Q 021941 235 KRFRTKFTQEQKDKMMEFA-EKVGWRFQKQDD-DQVDKFCAEV--GVKRHVFKVWMHNN 289 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fA-EklGWRiqk~de-~~ve~fC~ei--GV~r~V~KVWmhNn 289 (305)
||.|+.+|-|||.+|.+++ +. ....-. ++.+-|-.+. ||++.++.-|+.|.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~----~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL----QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS----SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 7889999999999999999 43 122222 2333233477 89999999998663
No 88
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=79.24 E-value=0.19 Score=43.19 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=40.3
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCC-CHHHHHHHHHHhCCCCceEEEecccccc
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQ-DDDQVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~-de~~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
+..|-+||.|+|+.+..++++ ++-.... +.-.++++|+++||++.+|--|....++
T Consensus 18 ~~~~r~yt~EfK~aAv~l~~~-~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p~ 74 (155)
T 2ao9_A 18 DELKQKLTAKQIQAAYLLVEN-ELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQD 74 (155)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH-HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHH
T ss_pred hHhhhhcCHHHHHHHHHHHHc-cccccccccCCCHHHHHHHhCCCHHHHHHHHHcCcc
Confidence 445667999999999888866 1111111 1247899999999999999999875443
No 89
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=78.87 E-value=0.16 Score=41.62 Aligned_cols=42 Identities=14% Similarity=0.430 Sum_probs=34.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCC-CCceEEEecccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGV-KRHVFKVWMHNN 289 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV-~r~V~KVWmhNn 289 (305)
||||+|.-+++.+.... ...+.++|...|| ++.+|--|++.+
T Consensus 11 tk~t~e~~e~I~~~i~~---------G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 11 SDYMPEVADDICSLLSS---------GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CSCCTTHHHHHHHHHHT---------TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC---------CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 89999998887775543 2467899999999 899999999765
No 90
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=78.39 E-value=0.86 Score=34.07 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.++|.|++.++..+.+ -||. +.++|.++||++.+|.-|+...
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s--------~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIR--------PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999998775 4653 4788999999999999999764
No 91
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=77.94 E-value=2 Score=34.59 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
.+||.|+|.++..+.+ -|| -+.++|.++||++.+|.-|+...+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4799999999998775 354 3667899999999999999987553
No 92
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=76.06 E-value=1 Score=35.65 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.+||.|++.++..+.+ -||. +.++|.++||++.+|.-|+...+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s--------~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVR--------PCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999998875 4653 67889999999999999998643
No 93
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=75.64 E-value=0.49 Score=40.10 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=37.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.++|.+|++.|..+.++|--.+....- ..++||+.+||++.++.-|..+.+
T Consensus 5 ~~lt~~~~~~~~~~~~~l~~~r~~~g~-t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELGL-SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTTC-CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 468899998887777775333322221 567899999999999999997643
No 94
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=75.06 E-value=1.3 Score=34.06 Aligned_cols=44 Identities=7% Similarity=0.303 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
.++|.+++.++..+.+ .||. +.++|..+||++.++.-|+...+.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~s--------~~~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNVS--------LHEMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHSGGG
T ss_pred ccCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHcccc
Confidence 6799999999988774 4653 578899999999999999987653
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=73.37 E-value=0.34 Score=35.88 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=41.3
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
.+.-.++|..|++.+.-+++- ...+++|.++||+..+++.++++-+.+++.+
T Consensus 16 ~~~~~~Lt~~e~~vl~l~~~g----------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLIAQG----------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp -CCGGGSCHHHHHHHHHHTTT----------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 444567999999998776422 2567899999999999999999988887765
No 96
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=69.01 E-value=0.42 Score=34.25 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+|+||++.|..|.+++--...... -..++|+..+||++.++.-|..+.+
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~g-ltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELG-LSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 678888888777776421111110 1356788999999888888886543
No 97
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=67.25 E-value=1.5 Score=35.14 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 28 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 74 (212)
T 2np3_A 28 ETRTREAILTAARVCFAE-RGFDATSLRRIAETAGVDQSLVHHFYGTK 74 (212)
T ss_dssp -------CHHHHHHHC----------------------------CCC-
T ss_pred cHHHHHHHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHhCCH
Confidence 456677777766665333 34566799999999999999999999664
No 98
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=62.95 E-value=11 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhC
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklG 257 (305)
.+++.|..||+|.-+.|+++.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 3577889999999999999999987
No 99
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=61.25 E-value=1.6 Score=35.01 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|-|.
T Consensus 26 ~~~~r~~Il~aa~~lf~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAR-EGARGLTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp -CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred cHHHHHHHHHHHHHHHHH-hChhhccHHHHHHHcCCCcchHHHhCCCH
Confidence 345667777755554322 24456689999999999999998888763
No 100
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=60.16 E-value=4.3 Score=29.20 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHh-------CCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 240 KFTQEQKDKMMEFAEKV-------GWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 240 kFT~EQkekM~~fAEkl-------GWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+++.++++....+.+.+ ||. .++|+..+||++.++.-|..+.
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~gls--------q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLS--------QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCC
Confidence 46677766444444432 443 4789999999999888888764
No 101
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=57.43 E-value=6.6 Score=28.32 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=32.3
Q ss_pred CcCCCHHHHHHHHHHHHHhCC-ccCCCCHHHHHHHHHHhCCCCceEEEe
Q 021941 238 RTKFTQEQKDKMMEFAEKVGW-RFQKQDDDQVDKFCAEVGVKRHVFKVW 285 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGW-Riqk~de~~ve~fC~eiGV~r~V~KVW 285 (305)
||.||+|.=+.|.+|..+..= -..-.....-++|+++ -+++++.+-|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-~~~~HtwqSw 49 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-SLTQHSWQSL 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-CSSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-HCCCCCHHHH
Confidence 899999999999999877300 0111234677888762 3678877766
No 102
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=56.40 E-value=1.5 Score=34.94 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 29 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp GGHHHHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hhHHHHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCCH
Confidence 45677777755554332 34566789999999999999998888763
No 103
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=56.02 E-value=2.1 Score=33.27 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=38.6
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
..+||+.|++.|.-+++ |+ ..++++.++||+..+++.++++-+.+++-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 35699999999877764 33 33889999999999999999987776653
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.71 E-value=2.9 Score=31.58 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=40.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNKQ 298 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~~ 298 (305)
.++|..|++.|.-+++- + ..++++.++||+..+++.++++-+.+++.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L--------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 46899999998887433 2 34789999999999999999999888877643
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=55.13 E-value=4.6 Score=30.91 Aligned_cols=45 Identities=4% Similarity=0.043 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC--CCCceEEEecccccc
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVG--VKRHVFKVWMHNNKN 291 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiG--V~r~V~KVWmhNnK~ 291 (305)
.++|.++++.+.++.+.-.|. .++++.++| |+..++.-|++.+.-
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~s--------~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCKT--------ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCCC--------HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhCCCCC--------HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 368999999988885543343 356777778 788999999987765
No 106
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.02 E-value=1.2 Score=30.94 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=38.3
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
-..+|+.|++.+.-+++. + ..++.|.++||++.+++.++++-+.+++.+
T Consensus 9 ~~~L~~~e~~il~~~~~g--~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD--K--------TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 356899999988776432 2 567899999999999999998877666543
No 107
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=54.99 E-value=2.1 Score=33.81 Aligned_cols=47 Identities=6% Similarity=-0.004 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.++-++++++-|.++=+ -+.-+.-.++++|++.||++.+|-..|.|.
T Consensus 17 ~~~~r~~Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~tlY~~F~sK 63 (216)
T 3qqa_A 17 VLARQEKIKAVALELFL-TKGYQETSLSDIIKLSGGSYSNIYDGFKSK 63 (216)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCTTTCCHHHHHHHHTTSCCSSSCSCCSH
T ss_pred cHHHHHHHHHHHHHHHH-HcChhhCCHHHHHHHhCCCHHHHHHhcCCH
Confidence 35667777776555411 135566789999999999999999888663
No 108
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=54.23 E-value=14 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
.|.|||+++. ++ +-+..|+-||.+...+.||++--+.
T Consensus 11 RT~EQK~~lI---~~-----------VT~a~~eslgap~esVrVlItE~p~ 47 (70)
T 3ej9_B 11 LSVARKQQLI---RD-----------VIDVTNKSIGSDPKIINVLLVEHAE 47 (70)
T ss_dssp CCHHHHHHHH---HH-----------HHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred CCHHHHHHHH---HH-----------HHHHHHHHcCCChHHEEEEeeeCCh
Confidence 3799998864 33 7788999999999999999986543
No 109
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=54.17 E-value=1.9 Score=34.00 Aligned_cols=47 Identities=6% Similarity=0.250 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 29 ~~~~r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp -CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccchHHHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 345577777755554221 24456689999999999999998888764
No 110
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=53.72 E-value=3.4 Score=33.58 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 33 ~~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~sK 79 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFSGK 79 (221)
T ss_dssp -CHHHHHHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred chhHHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 456677777755443211 24556689999999999999998888763
No 111
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=51.58 E-value=4.6 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 247 DKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 247 ekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
+++..+-++.||. .++|+..+||++.++.-|..+
T Consensus 8 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 8 ERIRARRKKLKIR--------QAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcC
Confidence 3445555555554 356777777777777666654
No 112
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=50.99 E-value=6.5 Score=32.12 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 262 KQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 262 k~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 47 G~~~~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 47 GYDGTSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred CccccCHHHHHHHHCCChhHHHHhCCCH
Confidence 4455689999999999999998887653
No 113
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=50.97 E-value=2.4 Score=33.08 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=35.4
Q ss_pred CcCCC-HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 238 RTKFT-QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 238 RTkFT-~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
|-+.+ .+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 10 r~r~~~~~~r~~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 10 RPAVPDAVVRESIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCCcccHHHHHHHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 33335 67778887755554222 24455689999999999999998888763
No 114
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=50.93 E-value=15 Score=30.41 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCcc----CCCCHHHHHHHHHHhCC
Q 021941 245 QKDKMMEFAEKVGWRF----QKQDDDQVDKFCAEVGV 277 (305)
Q Consensus 245 QkekM~~fAEklGWRi----qk~de~~ve~fC~eiGV 277 (305)
-+..|+++..||||++ |.+|+.++++|-+.|--
T Consensus 63 llkemlelisklgykvflllqdqdeneleefkrkies 99 (134)
T 2lci_A 63 LLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIES 99 (134)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHh
Confidence 3567999999999995 89999999999998743
No 115
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=49.54 E-value=1.1 Score=33.32 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=40.3
Q ss_pred cCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 237 FRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 237 ~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
.=.++|+.|++.|.-+++ |+ ..++++..+||+..+++.++++-+.+++.+.
T Consensus 26 ~l~~Lt~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAK--GY--------SNQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp TGGGCCSHHHHHHHHHHT--TC--------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 335799999999887644 32 3357899999999999999999988887653
No 116
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=49.31 E-value=24 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+|.|||++|. +. +.+.++..+|+++..+-|.++-.
T Consensus 10 rt~eqK~~L~---~~-----------it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFV---ER-----------LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHH---HH-----------HHHHHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHH---HH-----------HHHHHHHHhCcCcceEEEEEEEe
Confidence 6899997764 33 56678888999999888887755
No 117
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=49.23 E-value=21 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
-+|.|||++|.+ . +.+.++..+|+++..+-|.++-.
T Consensus 13 grs~eqK~~l~~---~-----------lt~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIE---G-----------VSDLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHH---H-----------HHHHHHHHHCcCcccEEEEEEEe
Confidence 578999988654 2 55668888999999888877655
No 118
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=49.11 E-value=5.3 Score=26.97 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 248 KMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 248 kM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++..+-++.||. .++|+..+||++.++.-|..+.
T Consensus 7 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~ 40 (71)
T 1zug_A 7 RLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGV 40 (71)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCC
Confidence 444455555554 3567777777777777666553
No 119
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=48.84 E-value=2.9 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 42 ~~~~r~~Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 42 GDDRELAILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCcHHHHHHHCCCH
Confidence 456677777755554211 34556689999999999999998888754
No 120
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=48.77 E-value=1 Score=31.90 Aligned_cols=48 Identities=6% Similarity=0.155 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
.+||+.|++.+.-+++ |+ ..++.+.++||+..+++.++++-+.+++.+
T Consensus 15 ~~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 15 QTLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3578888888877532 22 346899999999999999999988888765
No 121
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.14 E-value=16 Score=25.78 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.0
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklG 257 (305)
....|..||+|+-++|++..++.|
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC
Confidence 356778999999999999999977
No 122
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=47.75 E-value=6.3 Score=32.14 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=|+ +.-+.--++++|++.||++.+|-.+|-|.
T Consensus 34 ~~~r~~Il~AA~~lf~~-~G~~~~s~~~IA~~AGvs~~tlY~~F~sK 79 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVR-DGVRAVRHRAVAAEAQVPLSATTYYFKDI 79 (237)
T ss_dssp -CHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTTTC-----CH
T ss_pred HHHHHHHHHHHHHHHHh-cChhhcCHHHHHHHhCCChhHHHHHcCCH
Confidence 44566666644443211 24455689999999999999999888764
No 123
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=47.59 E-value=6.6 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 12 ~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 56 (199)
T 3on2_A 12 SLRRVLLARAESTLEK-DGVDGLSLRQLAREAGVSHAAPSKHFRDR 56 (199)
T ss_dssp CHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHTC-----CCCSSSSH
T ss_pred HHHHHHHHHHHHHHHh-cChhhhhHHHHHHHhCCChHHHHHHhCCH
Confidence 4455666544433111 24455689999999999999999998774
No 124
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=47.57 E-value=4.3 Score=32.04 Aligned_cols=49 Identities=8% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+..++-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK 57 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFADK 57 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCSSH
T ss_pred CChHHHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcCCH
Confidence 34678888888876665333 34456689999999999999998888763
No 125
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=47.46 E-value=11 Score=25.53 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCc
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWR 259 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWR 259 (305)
..+++...||+|+++.+.+.|+..|..
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCCC
Confidence 345566789999999999999998754
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.19 E-value=0.97 Score=33.61 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 240 KFTQEQKDKMME-FAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 240 kFT~EQkekM~~-fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
+++..|++.+.- |++- ...++++..+||+..+++++++.-+.++++
T Consensus 37 ~L~~~~r~vl~l~~~~g----------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----------WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 577888888766 3332 257899999999999999999988877654
No 127
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.78 E-value=2.2 Score=29.91 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKNK 297 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK~ 297 (305)
++++.|++.+.-++ |+ ..-+....++++..+||++.+++.+++.-+.++++.-
T Consensus 5 ~L~~~er~il~l~~---~l--~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRF---GI--DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHT---TT--TSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHH---cc--CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 57888888876644 11 0012345688999999999999999999888887653
No 128
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=46.52 E-value=2.6 Score=34.64 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 41 ~~~~r~~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 41 SAERLTRILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCH
Confidence 356667777755443221 24555689999999999999998888763
No 129
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=45.95 E-value=13 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.9
Q ss_pred CccCcCCCHHHHHHHHHHHHHhC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklG 257 (305)
.+.|.+||+|.-++|+++.++.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHccC
Confidence 34457899999999999999987
No 130
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=45.55 E-value=2.6 Score=33.18 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 24 ~~~~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSD-KTYFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred chhHHHHHHHHHHHHHHH-cCccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 456677777755443111 24566789999999999999998888663
No 131
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=45.52 E-value=6.5 Score=26.35 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 248 KMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 248 kM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++..+-+..||. .++|+..+||++.++.-|..+.
T Consensus 5 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 5 RVKSKRIQLGLN--------QAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCC
Confidence 444445555553 3567777777777777776553
No 132
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=45.24 E-value=4.4 Score=32.09 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 16 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIE-RPYAQVSIREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHHHHHHHHHT-SCCSCCCHHHHHHHHTSCTHHHHHHHSSH
T ss_pred hHHHHHHHHHHHHHHHH-CCCCcCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 56788888877776332 34455689999999999999998887653
No 133
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=43.85 E-value=4 Score=31.70 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++- +.-.++++|++.||++.+|-.+|.|.
T Consensus 13 ~~~r~~Il~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPER 56 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 456788888777764443 77799999999999999998888663
No 134
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.36 E-value=7.3 Score=26.59 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=8.9
Q ss_pred HHHHHHhCCCCceEEEecc
Q 021941 269 DKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 269 e~fC~eiGV~r~V~KVWmh 287 (305)
++|+..+||++.++.-|..
T Consensus 22 ~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 22 AALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 3444444444444444443
No 135
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=43.28 E-value=3.8 Score=33.10 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+|+.+-.=+.+-++++++-|.+|=+. +.-+..-++++|++.||++.+|--.|-|.
T Consensus 14 r~~~~~~r~~~~r~~Il~aA~~lf~e-~G~~~~s~~~IA~~aGvskgtlY~yF~sK 68 (214)
T 2oer_A 14 RKQPQQARSSELVASILEAAVQVLAS-EGAQRFTTARVAERAGVSIGSLYQYFPNK 68 (214)
T ss_dssp ---------CHHHHHHHHHHHHC-------CCCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHh-hCcccccHHHHHHHhCCCCchHHHhCCCH
Confidence 34433333456678888877776443 34555689999999999999998888663
No 136
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=43.11 E-value=39 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+++.|| .|||++ ||+. +.+.||+-+|-+...++|-|+--+
T Consensus 9 ~~~pRT---~EQKra---laeE-----------~T~if~evLGcpPgsV~IVi~EV~ 48 (72)
T 3mb2_B 9 GDRPPD---RTRKQA---FAAE-----------ASAIFQRVIGTPPGRLQLIIQIVS 48 (72)
T ss_dssp CSSCCC---HHHHHH---HHHH-----------HHHHHHHHHCCCTTCCEEEEEECC
T ss_pred CCCCCC---HHHHHH---HHHH-----------HHHHHHHHhCCCCCcEEEEEEecC
Confidence 355554 899976 4544 567899999999999999987544
No 137
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=42.57 E-value=9.7 Score=36.13 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHH---------HhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 021941 240 KFTQEQKDKMMEFAE---------KVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 240 kFT~EQkekM~~fAE---------klGWRiqk~de~~ve~fC~eiGV~r~V~KVWmh 287 (305)
.+|.+|+++.+.-.+ .-||+ -...++++|.+.||++++|.=|+.
T Consensus 22 ~l~~~~~~~A~~r~~~i~~v~~l~~~g~~----~~~a~~~~a~~~gvS~~Tl~rW~~ 74 (529)
T 4fcy_A 22 NASDSQRRLAEKWLPAVQAADEMLNQGIS----TKTAFATVAGHYQVSASTLRDKYY 74 (529)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 578888887544211 22443 246799999999999999999974
No 138
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.48 E-value=23 Score=28.24 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=35.3
Q ss_pred CcCCCHHHHHHHHHHHHH-hCCccCCCCHHHHHHHHHH------hCCCCceEEEecccccccCCC
Q 021941 238 RTKFTQEQKDKMMEFAEK-VGWRFQKQDDDQVDKFCAE------VGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEk-lGWRiqk~de~~ve~fC~e------iGV~r~V~KVWmhNnK~~~~k 295 (305)
+.++|.++++.+.++.+. -+|.. .++.++|..+ +.|+..+|.-|++..+..-.|
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~----~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~ 141 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFA----WEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFN 141 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCH----HHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSC
T ss_pred CCCCCHHHHHHHHHHHHHCccchH----HHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCcc
Confidence 567899999999887654 33432 2233344332 358899999999987766433
No 139
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=42.44 E-value=6.4 Score=30.51 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 16 ~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 16 LKRKQQLMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcCCH
Confidence 45567787766665322 34455689999999999999998888763
No 140
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=42.38 E-value=32 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.2
Q ss_pred CHHHHHHHHHH----HHHhCCccCCCCHHHHHHHHH
Q 021941 242 TQEQKDKMMEF----AEKVGWRFQKQDDDQVDKFCA 273 (305)
Q Consensus 242 T~EQkekM~~f----AEklGWRiqk~de~~ve~fC~ 273 (305)
+++.+++|..| |++.||++. +|++++..+-.
T Consensus 7 ~~~~~e~~~~f~ek~ae~~G~~~N-pD~evt~~vi~ 41 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRTDTYFC-SDLSVTAVVIE 41 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCB-SSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEC-CCHHHHHHHHH
Confidence 46677777775 888999984 66666555433
No 141
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=42.25 E-value=13 Score=33.73 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.8
Q ss_pred ccCcCCCHHHHHHHHHHHHHhCCc
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVGWR 259 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklGWR 259 (305)
..++.||+.|+++|+.+.+ ++|
T Consensus 236 ~C~~~FT~gQ~~RM~~~~~--~~R 257 (262)
T 2cki_A 236 KCMVMFTQGQATRVNACLD--GPR 257 (262)
T ss_dssp TTCCBCBHHHHHHHHHHHH--TTT
T ss_pred ccccccCHHHHHHHHHHHH--HHH
Confidence 3568999999999999776 454
No 142
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=42.03 E-value=5.5 Score=30.92 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++.++++++-|.+|=.+ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGSK 58 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCCH
Confidence 44566676644443111 24456689999999999999998888653
No 143
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.57 E-value=1.6 Score=29.97 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
++++.|++.+.-++.. | ...++.+..+||++.+++.|++.-+.++++.
T Consensus 15 ~L~~~~r~il~l~~~~-g--------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL-G--------LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTS-C--------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5788999888764311 1 2467899999999999999999888877654
No 144
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=40.83 E-value=6.8 Score=30.94 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-|+++++-|.+|=++ +.-+.-.++++|++.||++.+|=..|.|.
T Consensus 11 ~~~~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 11 SIITQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp TSHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSSH
T ss_pred cHHHHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCCH
Confidence 345566777655554322 24455689999999999999998888663
No 145
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.78 E-value=8.7 Score=26.89 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhCCCC
Q 021941 265 DDQVDKFCAEVGVKR 279 (305)
Q Consensus 265 e~~ve~fC~eiGV~r 279 (305)
...+.++|..+||+.
T Consensus 44 ~~~l~~ia~~l~v~~ 58 (77)
T 2k9q_A 44 VVKYIAFLRSKGVDL 58 (77)
T ss_dssp HHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhCcCH
Confidence 345555555555543
No 146
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=40.02 E-value=3.7 Score=31.55 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 11 ~~tr~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 56 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYESK 56 (177)
T ss_dssp HHHHHHHHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCSST
T ss_pred HHHHHHHHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcCCH
Confidence 56678888888877554 34456689999999999999998777653
No 147
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.38 E-value=27 Score=25.08 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=19.1
Q ss_pred ccCcCCCHHHHHHHHHHHHHhC
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklG 257 (305)
-.|-.||+|.-++|+.+.++.|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
Confidence 3456999999999999999977
No 148
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=39.12 E-value=9.5 Score=26.22 Aligned_cols=20 Identities=5% Similarity=0.273 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 021941 269 DKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 269 e~fC~eiGV~r~V~KVWmhN 288 (305)
++|+..+||++.++.-|..+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45555555555555555544
No 149
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.99 E-value=4.1 Score=35.46 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=41.7
Q ss_pred cCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 237 FRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 237 ~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
...+|++.|++.+.-+++- . ..++.+..+||+..++|+.+++-+.+++.+
T Consensus 194 ~~~~L~~~erevl~L~~~G--~--------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 194 HRNILSEREKEILRCIRKG--L--------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp HTTSSCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHccCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3468999999998876432 2 568899999999999999999999998875
No 150
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.64 E-value=7 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCC--HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 021941 240 KFT--QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 240 kFT--~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmh 287 (305)
.++ .++.+.+..+.+ -|+ .+.++|.++||++.++..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 567 777777776543 233 467899999999999998875
No 151
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.45 E-value=10 Score=25.70 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCCceEEEeccc
Q 021941 268 VDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 268 ve~fC~eiGV~r~V~KVWmhN 288 (305)
.++|+..+||++.++.-|..+
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHCC
Confidence 456777777777777666654
No 152
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.06 E-value=8.7 Score=29.03 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=37.8
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
--.||..|++.|.-+++ |+ ..++++.++||+.++++..+.+-+.|++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 35699999999888873 44 36789999999999999998887777653
No 153
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=38.00 E-value=36 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+||.|||++|-+ . +.+.+++.+|++...+-|.|+-..
T Consensus 11 rls~eqk~~L~~---~-----------l~~~l~~~lgip~~~v~V~i~e~~ 47 (76)
T 1gyx_A 11 ELDEQQKAALAA---D-----------ITDVIIRHLNSKDSSISIALQQIQ 47 (76)
T ss_dssp CCCHHHHHHHHH---H-----------HHHHHHHHHTCCGGGCEEEEEECC
T ss_pred CCCHHHHHHHHH---H-----------HHHHHHHHhCcCCceEEEEEEEeC
Confidence 478999987654 2 455678889999988888776543
No 154
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=37.73 E-value=7.2 Score=30.34 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 15 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 15 SKAAARIRAAAIEVFAA-KGYGATTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp CHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCcChhhhcCCCH
Confidence 45566666644443221 24456689999999999999998888754
No 155
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=37.58 E-value=5.6 Score=33.10 Aligned_cols=46 Identities=13% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 22 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~sK 67 (231)
T 2zcx_A 22 QQREEAILDAARELGTE-RGIREITLTDIAATVGMHKSALLRYFETR 67 (231)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCH
Confidence 45566666644443222 24456689999999999999998888663
No 156
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=37.33 E-value=2.3 Score=33.70 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=37.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
.++++.|++.+.-+... ....++.|..+||++.+++.|++.-+.+++
T Consensus 21 ~~L~~~~r~vl~l~y~~---------g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYAD---------DYSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GGSCHHHHHHHHHHHHT---------CCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 56889999988774332 125688999999999999999998877654
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.93 E-value=9.4 Score=29.25 Aligned_cols=36 Identities=6% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEec
Q 021941 247 DKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWM 286 (305)
Q Consensus 247 ekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWm 286 (305)
+.|+.++.+ -+...|+.++.+|.+..++-+=+|-||
T Consensus 19 e~L~~Yy~~----hk~L~EeDl~~L~~kskms~qqvkdwF 54 (70)
T 2ys9_A 19 QPLERYWAA----HQQLRETDIPQLSQASRLSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHH----TCCCCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHH----hcccchhhHHHHHHHhCCCHHHHHHHH
Confidence 678887777 466888999999999999999999999
No 158
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=36.72 E-value=4.4 Score=31.84 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.++=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 16 ~~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 62 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSSH
T ss_pred hHHHHHHHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCCH
Confidence 356677777755554211 24455679999999999999998887663
No 159
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=36.52 E-value=9.1 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
.+-|+++++-|.+|=++ +.-+.-.++++|++.||++.+|=.+|.|
T Consensus 13 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~yF~s 57 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFAR-QGYSETSIGDIARACECSKSRLYHYFDS 57 (203)
T ss_dssp TTHHHHHHHHHHHHHHH-TCTTTSCHHHHHHHTTCCGGGGTTTCSC
T ss_pred hhHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcCeeeeeeCC
Confidence 34566666644443222 2455668999999999999999888865
No 160
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=36.39 E-value=6.9 Score=27.75 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 021941 268 VDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 268 ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
++++|..+||++.+|.-|..+.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 57899999999999999998865
No 161
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.03 E-value=3.5 Score=33.04 Aligned_cols=45 Identities=11% Similarity=0.294 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=|+- . +.--++++|++.||++.+|-.+|.|.
T Consensus 19 ~~~r~~Il~aA~~lf~~~-G-~~~s~~~IA~~aGvs~~tlY~~F~sK 63 (215)
T 2hku_A 19 RQTRDALFTAATELFLEH-G-EGVPITQICAAAGAHPNQVTYYYGSK 63 (215)
T ss_dssp -CHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHh-C-CCcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 445666666555543332 5 77899999999999999998888663
No 162
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=35.82 E-value=7.4 Score=30.37 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 11 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 55566666644443221 24456689999999999999998877753
No 163
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=35.81 E-value=5.7 Score=27.24 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 021941 263 QDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~ 280 (305)
+..+.+..+|..+||+..
T Consensus 50 ~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 50 PSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp CCHHHHHHHHHHHTSCGG
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 556677777777777654
No 164
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=35.72 E-value=6.7 Score=30.86 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|..
T Consensus 17 ~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 17 TTQDRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred hHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCCCHH
Confidence 3455555543333111 245566899999999999999988887643
No 165
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=35.50 E-value=12 Score=26.13 Aligned_cols=22 Identities=5% Similarity=0.001 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCceEEEecccc
Q 021941 268 VDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 268 ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.++|+..+||++.++.-|..+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678888888888887777654
No 166
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=34.34 E-value=22 Score=28.61 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHHHHHHH
Q 021941 239 TKFTQEQKDKMMEFAEK 255 (305)
Q Consensus 239 TkFT~EQkekM~~fAEk 255 (305)
-.+|+|||+++.+.+|+
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 57899999999997776
No 167
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=34.05 E-value=56 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.|.|||++|.+ . +.+.++..+|+++..+-|.++-.
T Consensus 12 rs~eqK~~L~~---~-----------it~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELAR---A-----------LSAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCCCcccEEEEEEEc
Confidence 58999988654 2 45567888999988877766543
No 168
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=33.32 E-value=48 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.4
Q ss_pred CcCCCHHHHHHHHHHHHHhC
Q 021941 238 RTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklG 257 (305)
|..||+|.-+.|.++.++.|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999987
No 169
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=32.89 E-value=6.3 Score=26.08 Aligned_cols=18 Identities=6% Similarity=-0.158 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 021941 263 QDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~ 280 (305)
+..+.+..+|..+||+..
T Consensus 41 ~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 41 PSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp CCHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 445566666666666543
No 170
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=32.86 E-value=9.4 Score=27.93 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 021941 263 QDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~ 280 (305)
+..+.+.++|..+||+..
T Consensus 49 p~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 49 PRMGKVQALADYFNINKS 66 (94)
T ss_dssp CCHHHHHHHHHHHTCCTH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 455667777777777654
No 171
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=32.72 E-value=31 Score=28.96 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHhCCccCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQK 262 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk 262 (305)
.||+||+..+..--++.||.|.+
T Consensus 133 ~fseeql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 133 SFTDEDVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999988999999864
No 172
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.70 E-value=13 Score=27.00 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 021941 262 KQDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 262 k~de~~ve~fC~eiGV~r~ 280 (305)
.+..+.+..+|..+||+..
T Consensus 47 ~~~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 47 ALTPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp CCCHHHHHHHHHHTCSCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3556677777777777653
No 173
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=32.50 E-value=49 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=19.9
Q ss_pred CccCcCCCHHHHHHHHHHHHHhC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklG 257 (305)
...|..||+|.-++|+++.++.|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 44567999999999999999977
No 174
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=32.32 E-value=99 Score=23.45 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHH----HHHHHhCCCCceEEE---eccccc
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVD----KFCAEVGVKRHVFKV---WMHNNK 290 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve----~fC~eiGV~r~V~KV---WmhNnK 290 (305)
..||.|+..++++-+.|..+.+.+-++=-.....+|+ +|+.++|++ .|++ |+++=+
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~--~f~~S~gWl~~F~ 127 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMD--DFTASNGWLDRFR 127 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCT--TCCCCHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHH
Confidence 4688899999999888888887765543334555554 566677876 2433 665543
No 175
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=32.07 E-value=73 Score=21.31 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
+|.|||++|.+ . +.+.+++.+|+++..+-|-|+...
T Consensus 12 ~s~eqk~~l~~---~-----------lt~~l~~~lg~~~~~v~V~i~e~~ 47 (64)
T 3abf_A 12 RPPEKKRELVR---R-----------LTEMASRLLGEPYEEVRVILYEVR 47 (64)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCCCcccEEEEEEEcC
Confidence 57999987543 3 556678889999999988776654
No 176
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=32.05 E-value=8.1 Score=32.04 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 41 ~~~~r~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK 87 (255)
T 3g1o_A 41 GDDRELAILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSK 87 (255)
T ss_dssp CCHHHHHHHHHHHHHHTT-SCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 456677778777765222 23445689999999999999998888764
No 177
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.41 E-value=4 Score=30.16 Aligned_cols=52 Identities=4% Similarity=-0.063 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
++++.|++.+.-.+-= ...+....++++..+||++.+++.|++.-+.++++.
T Consensus 18 ~L~~~er~vl~l~~~l-----~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGL-----LDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTT-----TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5788888887664420 011234678999999999999999999988887764
No 178
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=31.18 E-value=10 Score=30.90 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
++++.|++.+.-.+ -++.-.+++|..+||+..+++.+++.-+.+++
T Consensus 198 ~L~~~~r~vl~l~~---------~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRY---------YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hCCHHHHHHHHHHH---------hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 46677777765522 23456789999999999999999998877653
No 179
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.84 E-value=2.4 Score=32.61 Aligned_cols=46 Identities=4% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
++++.|++.+. +.- +..-.+++|..+||+..+++.+++.-+.++++
T Consensus 109 ~L~~~~r~v~~-~~~---------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI---------RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHT---------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH---------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67888888877 321 12256889999999999999999988777654
No 180
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=30.83 E-value=6.7 Score=32.16 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 12 ~~~r~~Il~AA~~l~~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK 57 (231)
T 2qib_A 12 EERRQQLIGVALDLFSR-RSPDEVSIDEIASAAGISRPLVYHYFPGK 57 (231)
T ss_dssp HHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCCCH
Confidence 44566666655544222 24456689999999999999998888763
No 181
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.79 E-value=13 Score=26.62 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 021941 263 QDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~ 280 (305)
+..+.+.++|..+||+..
T Consensus 59 ~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 59 FSLESLIDMITSIGLKVE 76 (83)
T ss_dssp CCHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHcCCCeE
Confidence 444556666666666544
No 182
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.60 E-value=8.6 Score=30.72 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 262 KQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 262 k~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
.-+..-++++|++.||++.+|--+|.|
T Consensus 26 G~~~~s~~~IA~~AGvs~gtlY~~F~s 52 (203)
T 2np5_A 26 GLEGASVREVAKRAGVSIGAVQHHFST 52 (203)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred ChhhccHHHHHHHhCCCHHHHHHHcCC
Confidence 455668999999999999999888866
No 183
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=30.40 E-value=6 Score=31.16 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+-++++++-|.++=++ ..-+.-.++++|++.||++.+|--.|.|.
T Consensus 10 ~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (216)
T 3s5r_A 10 NTRELLLDAATTLFAE-QGIAATTMAEIAASVGVNPAMIHYYFKTR 54 (216)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTTCCHHHHHHTTTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHH-cCcccCCHHHHHHHHCCCHHHHHHHcCCH
Confidence 3455555544333111 24556689999999999999998888653
No 184
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=30.11 E-value=11 Score=29.77 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=|+ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 11 ~~~r~~Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 11 IETQKAILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCCCH
Confidence 45566666644443222 24556689999999999999998888663
No 185
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=29.92 E-value=5.7 Score=33.90 Aligned_cols=48 Identities=4% Similarity=0.081 Sum_probs=38.7
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
...||+.|+|.+.-+++- + ..++.+..+||+.+++|.+++|-+.|++-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g------~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG------K----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT------C----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcC------C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 467999999998776543 2 34788999999999999999998877654
No 186
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.45 E-value=24 Score=26.03 Aligned_cols=29 Identities=34% Similarity=0.702 Sum_probs=20.5
Q ss_pred ceeccccccccCCCCCCccccccccc--ccccccccc
Q 021941 94 NIFDGCGEFMPSGDEGTLEALKCAAC--ECHRNFHRK 128 (305)
Q Consensus 94 ~a~DGCgEFmp~~~~gt~~al~CaAC--gCHRnFHrk 128 (305)
..=|=|++|| ... .|+|..| .||+-=+.+
T Consensus 36 t~C~~C~~~l--~~q----G~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 36 GWCDLCGREV--LRQ----ALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CBCTTTSSBC--SSC----CEECTTSSCEECTGGGGG
T ss_pred cchhhhhHHH--HhC----cCccCCCCCeechhhhcc
Confidence 4458899999 333 5999998 567655544
No 187
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.21 E-value=1.2e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=28.8
Q ss_pred CcCCCHHHHHHHHHHHHHhCCc-cCCCCHHHHHHHHHHhCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWR-FQKQDDDQVDKFCAEVGVK 278 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWR-iqk~de~~ve~fC~eiGV~ 278 (305)
|.++|++|++.|++.+..+-.- --+-+..++..+.+.+|..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~ 48 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 4789999999999977774332 1234557777777777754
No 188
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.18 E-value=14 Score=25.24 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=12.4
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 021941 269 DKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 269 e~fC~eiGV~r~V~KVWmhN 288 (305)
++|+..+||++.++.-|..+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCC
Confidence 45666666666666666554
No 189
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=29.16 E-value=95 Score=26.98 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCce
Q 021941 240 KFTQEQKDKMME-FAEKVGWRFQKQDD-DQVDKFCAEVGVKRHV 281 (305)
Q Consensus 240 kFT~EQkekM~~-fAEklGWRiqk~de-~~ve~fC~eiGV~r~V 281 (305)
.||.++.-+|+. ..+.|+|++.-+.- .-++.|+..++++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH
Confidence 488999999998 89999999988765 6889999999987653
No 190
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.10 E-value=8.7 Score=30.09 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
..+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 12 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 58 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFESK 58 (212)
T ss_dssp CHHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred chhhHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCCH
Confidence 356677777755554222 24556689999999999999998887753
No 191
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.03 E-value=1.6 Score=36.13 Aligned_cols=24 Identities=4% Similarity=-0.161 Sum_probs=14.1
Q ss_pred CCCCccCcCCCHHHHHHHHHHHHH
Q 021941 232 LSKKRFRTKFTQEQKDKMMEFAEK 255 (305)
Q Consensus 232 ~~kKR~RTkFT~EQkekM~~fAEk 255 (305)
...||.||.||++|++.|.+.++.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~ 157 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA 157 (169)
T ss_dssp -------EEEECCCCEECCSSCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC
Confidence 456999999999999998875443
No 192
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=29.00 E-value=71 Score=24.07 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.|.|||++|-+ . .-+.+.+.+||+...+-|.|+...
T Consensus 67 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 67 IEPSRNRDHSA---K-----------LFDHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp CSHHHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcCeEEEEEEECC
Confidence 46999977644 3 455688899999999999888765
No 193
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=28.99 E-value=71 Score=24.24 Aligned_cols=36 Identities=6% Similarity=0.030 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.|.|||++|-+ . .-+.+.+.+||+...+-|.|+...
T Consensus 68 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 68 IGGPQNKSYTK---L-----------LCDILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp CSHHHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcceEEEEEEECC
Confidence 46999977544 3 455688899999999999988765
No 194
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=28.75 E-value=9 Score=29.89 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++-++++++-|.++=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNK 58 (220)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCH
Confidence 55667776644443111 24455689999999999999998888763
No 195
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=28.70 E-value=17 Score=30.21 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=30.1
Q ss_pred CCccCcCCCHHHH-HHHHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 234 KKRFRTKFTQEQK-DKMME-FAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 234 kKR~RTkFT~EQk-ekM~~-fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+++-|...|.++. +...+ |+|+ .-+.-.++++|.+.||++.+|--+|-|.
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~------G~~~~s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEV------GLDGVSTRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHH------CGGGCCHHHHHHHHTSCTHHHHTTCSSH
T ss_pred CcccccccCHHHHHHHHHHHHHhc------CcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 4455566666553 22233 4443 4455679999999999999998888653
No 196
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=28.68 E-value=46 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCCCccCcCCCHHHHHHHHHHHHHhC
Q 021941 231 VLSKKRFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 231 ~~~kKR~RTkFT~EQkekM~~fAEklG 257 (305)
...++|.|..||.|.-+.|.+..++.|
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G 32 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLG 32 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 345688899999999999999999987
No 197
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.51 E-value=59 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=25.5
Q ss_pred CcCCCHHHHHHHHHHHHHh--------------------CCccCCCCHHHHHHHHHHhCC
Q 021941 238 RTKFTQEQKDKMMEFAEKV--------------------GWRFQKQDDDQVDKFCAEVGV 277 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEkl--------------------GWRiqk~de~~ve~fC~eiGV 277 (305)
.--+|+||+++|.+..++. =+.-.++|++.|+++..||.-
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~ 124 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMES 124 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3569999999987754321 122356788888888877754
No 198
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=28.29 E-value=7.2 Score=32.36 Aligned_cols=46 Identities=7% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 45 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK 90 (245)
T 3aqt_A 45 EQTRARLITSARTLMAE-RGVDNVGIAEITEGANIGTGTFYNYFPDR 90 (245)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHTTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHHHh-cCcccCcHHHHHHHhCCChHHHHHHcCCH
Confidence 44556666544443221 13445689999999999999998888764
No 199
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=28.08 E-value=76 Score=24.37 Aligned_cols=36 Identities=3% Similarity=0.030 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.|.|||++|-+ . .-+.+.+.+||+...+-|.|+...
T Consensus 68 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 68 LSADDNIRHTQ---K-----------ITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEECC
Confidence 46999977644 3 455688899999999999888765
No 200
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=28.07 E-value=17 Score=25.68 Aligned_cols=27 Identities=37% Similarity=0.783 Sum_probs=18.4
Q ss_pred ceeccccccccCCCCCCccccccccc--ccccccc
Q 021941 94 NIFDGCGEFMPSGDEGTLEALKCAAC--ECHRNFH 126 (305)
Q Consensus 94 ~a~DGCgEFmp~~~~gt~~al~CaAC--gCHRnFH 126 (305)
.-=|=|++|| .. ..|+|..| .||+-=+
T Consensus 23 t~C~~C~~~i--~k----qg~kC~~C~~~cH~kC~ 51 (59)
T 1rfh_A 23 GWCDLCGREV--LR----QALRCANCKFTCHSECR 51 (59)
T ss_dssp EECTTTCSEE--CS----CCEECTTTSCEECHHHH
T ss_pred eEchhcchhh--hh----CccEeCCCCCeEehhhh
Confidence 3457899999 33 36999998 4555433
No 201
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.04 E-value=13 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 262 KQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 262 k~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 28 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 55 (196)
T 3he0_A 28 GFQGLSMQKLANEAGVAAGTIYRYFSDK 55 (196)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred CcccCCHHHHHHHhCCCcchHHHhcCCH
Confidence 4456689999999999999998877753
No 202
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.79 E-value=8.7 Score=30.53 Aligned_cols=48 Identities=6% Similarity=0.212 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
..+.+-|+++++-|.++=.+ +.-+.-.++++|++.||++.+|-..|.|
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hCCHHHHHHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 45667778887766554322 2445568999999999999998777765
No 203
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=27.78 E-value=20 Score=25.90 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHH--hCCCC
Q 021941 263 QDDDQVDKFCAE--VGVKR 279 (305)
Q Consensus 263 ~de~~ve~fC~e--iGV~r 279 (305)
+..+.+..+|.. +||+.
T Consensus 44 p~~~~l~~ia~~l~~~v~~ 62 (99)
T 2l49_A 44 PPTDVMMNILQTPQFTKYT 62 (99)
T ss_dssp CCHHHHHHHHSSSSSSSSS
T ss_pred CCHHHHHHHHHHhCCCCCH
Confidence 456677777777 55543
No 204
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Probab=27.53 E-value=89 Score=26.53 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCC
Q 021941 234 KKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVK 278 (305)
Q Consensus 234 kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~ 278 (305)
+.|.|..+++|++++|.+|++. .+++|.+-+|.+
T Consensus 233 ~~~~~~~l~~e~~~~L~~~~~~-----------~~~~L~~l~g~~ 266 (271)
T 1t8t_A 233 KGRTHPEIDREVVRRLREFYRP-----------FNLKFYQMTGHD 266 (271)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCcC
Confidence 3567789999999999998887 778888888865
No 205
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=27.43 E-value=81 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCc
Q 021941 240 KFTQEQKDKMME-FAEKVGWRFQKQDD-DQVDKFCAEVGVKRH 280 (305)
Q Consensus 240 kFT~EQkekM~~-fAEklGWRiqk~de-~~ve~fC~eiGV~r~ 280 (305)
.||.++.-+|+. ..+.|+|++.-+.- .-+..|+..++++..
T Consensus 131 ~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~ 173 (271)
T 2w96_A 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEE 173 (271)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCch
Confidence 589999999988 89999999988766 678899999988754
No 206
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=27.27 E-value=75 Score=21.80 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.|.|||++|.+ . +.+.++..+|+++..+-|-|+-.
T Consensus 11 rs~eqk~~L~~---~-----------it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 11 RSPQEVAALGE---A-----------LTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEEc
Confidence 48999988754 2 45567788999888777766543
No 207
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=27.24 E-value=16 Score=30.67 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=12.1
Q ss_pred ccccccccccccccc
Q 021941 111 LEALKCAACECHRNF 125 (305)
Q Consensus 111 ~~al~CaACgCHRnF 125 (305)
.-.|+|.|||.+|..
T Consensus 121 ~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 121 ISLLKCEACGAKAPL 135 (138)
T ss_dssp TTEEECSTTSCCCCS
T ss_pred eEEEEccCCCCCccc
Confidence 348999999998754
No 208
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.84 E-value=5.2 Score=28.32 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
++++.|++.+.-.+- | ...+....++++..+||++.+++.|++.-+.+++
T Consensus 10 ~L~~~er~il~l~~~---l--~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKG---L--IDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHT---T--TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh---c--ccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578899988877542 0 1112346689999999999999999998887776
No 209
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=26.81 E-value=44 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.366 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCceEEEecccccccC
Q 021941 267 QVDKFCAEVGVKRHVFKVWMHNNKNNT 293 (305)
Q Consensus 267 ~ve~fC~eiGV~r~V~KVWmhNnK~~~ 293 (305)
+.+.||.+.||++..++.||...+-.-
T Consensus 66 Lm~aY~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 66 LKESYCQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp HHHHHHHHHTCCTTSEEEEETTEECCT
T ss_pred HHHHHHHHhCCChhhEEEEECCeECCC
Confidence 455667777889999999998776543
No 210
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=26.77 E-value=6.9 Score=30.70 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 246 KDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 246 kekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++++++-|.+|=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 10 r~~Il~AA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 52 (195)
T 3frq_A 10 DDEVLEAATVVLKR-CGPIEFTLSGVAKEVGLSRAALIQRFTNR 52 (195)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred HHHHHHHHHHHHHh-hCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 56666644443111 13345579999999999999998777653
No 211
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=26.52 E-value=10 Score=26.11 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 021941 262 KQDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 262 k~de~~ve~fC~eiGV~r~ 280 (305)
.++.+.+..+|..+||+..
T Consensus 47 ~~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVR 65 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 4666777888888887654
No 212
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.39 E-value=74 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGW 258 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGW 258 (305)
...|..||+|.-+.|+.+.++.|=
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc
Confidence 445689999999999999999874
No 213
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=26.31 E-value=65 Score=24.42 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCC
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTV 294 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~ 294 (305)
.|.|||++|-+ . .-+.+.+.+||+...+-|-|+... .|+
T Consensus 68 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 68 YGPSEPEKVTS---I-----------VTAAITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp CCTTHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEECCS-CCE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcceEEEEEEEhh-Hee
Confidence 35799977654 2 445588899999999999998877 554
No 214
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.28 E-value=3.5 Score=32.44 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
.++++.|++.+.-++.. ....++.|..+||++.+++.+++.-+.++++
T Consensus 24 ~~L~~~~r~vl~l~~~~---------g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLE---------DYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHHTS---------CCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45778888877654321 2356889999999999999999988776653
No 215
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=26.17 E-value=15 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.830 Sum_probs=10.4
Q ss_pred ccccccccccccc
Q 021941 112 EALKCAACECHRN 124 (305)
Q Consensus 112 ~al~CaACgCHRn 124 (305)
-.|+|.|||-.|.
T Consensus 20 ~~l~C~aCG~~~~ 32 (36)
T 1k81_A 20 HLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEhhcCCCccc
Confidence 3799999997664
No 216
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=25.97 E-value=63 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=18.1
Q ss_pred CcCCCHHHHHHHHHHHHHhC
Q 021941 238 RTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklG 257 (305)
|.+||+|.-++|++..++.|
T Consensus 9 ~~~WT~eED~~L~~~v~~~G 28 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG 28 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 56899999999999999977
No 217
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=25.94 E-value=44 Score=29.95 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhCCccCC-----CCHHHHHHHHHHhCCCCceEEEe
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQK-----QDDDQVDKFCAEVGVKRHVFKVW 285 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk-----~de~~ve~fC~eiGV~r~V~KVW 285 (305)
.|+..|+..++.-++++||+.-- ..++.+++|+ +.|++-.+++|=
T Consensus 99 i~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i-~~G~~aiiv~v~ 148 (237)
T 3rjz_A 99 LASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELL-NLGFKIMVVGVS 148 (237)
T ss_dssp --CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHH-HTTCEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHH-HCCCEEEEEEEe
Confidence 56789999999999999998743 4567888887 579998888883
No 218
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.88 E-value=43 Score=22.17 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHH
Q 021941 233 SKKRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAE 274 (305)
Q Consensus 233 ~kKR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~e 274 (305)
...|+--.++.|.+++|..+|++.|-.+..-=...+++|-.+
T Consensus 8 ~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 8 NGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 346777889999999999999997753333223444444443
No 219
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=25.76 E-value=8 Score=30.79 Aligned_cols=46 Identities=9% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 22 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 67 (214)
T 2zb9_A 22 EEVRAEVLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWPSK 67 (214)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCH
Confidence 34477777754443221 23455689999999999999998888663
No 220
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=25.73 E-value=84 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.|.|||++|.+ . +.+.+++.+|+++..+-|.++-.
T Consensus 12 rs~eqK~~L~~---~-----------it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 12 RTDEQKRALSA---G-----------LLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHHCcCcccEEEEEEEe
Confidence 47999988654 3 55668888999988777755543
No 221
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=25.60 E-value=48 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRF 260 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRi 260 (305)
..++|.+++++++|+.+|...
T Consensus 123 ~~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 123 DIEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp CCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 589999999999999987654
No 222
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=25.55 E-value=21 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|-|
T Consensus 28 ~~r~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~s 71 (217)
T 3hta_A 28 ERRQRIIDAAIRVVGQ-KGIAGLSHRTVAAEADVPLGSTTYHFAT 71 (217)
T ss_dssp HHHHHHHHHHHHHHHH-HTGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHH-cCcccCCHHHHHHHcCCCcchhhhcCCC
Confidence 3466666544433111 1445567999999999999999888765
No 223
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=25.39 E-value=7.9 Score=29.87 Aligned_cols=46 Identities=7% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 9 ~~~r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp -CHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCSCH
T ss_pred HhHHHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcCCH
Confidence 45566666644443222 24455689999999999999998888764
No 224
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=25.12 E-value=59 Score=26.19 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhCCccCC
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQK 262 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk 262 (305)
+++|.+++++++++++|+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~G~~~~~ 154 (174)
T 2hzq_A 133 LPPETVDSLKNILTSNNIDVKK 154 (174)
T ss_dssp CCHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6899999999999999987653
No 225
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=24.86 E-value=3.4 Score=32.30 Aligned_cols=46 Identities=7% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ ..-+.-.++++|++.||++.+|-.+|.|.
T Consensus 19 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K 64 (203)
T 3mnl_A 19 RERRKRILDATMAIASK-GGYEAVQMRAVADRADVAVGTLYRYFPSK 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHcCCChhHHHHHcCCH
Confidence 45577777755553111 12344579999999999999998888763
No 226
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.81 E-value=5.1 Score=31.35 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
++-|+++++-|.+|=++ +.-+...++++|++.||++.+|-.+|-|
T Consensus 17 ~~~R~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~s 61 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHhhhCCC
Confidence 55677777655443111 1334457999999999999999888876
No 227
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.70 E-value=23 Score=24.91 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHhCCCCce
Q 021941 263 QDDDQVDKFCAEVGVKRHV 281 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~V 281 (305)
+....+..+|..+||+...
T Consensus 52 ~~~~~l~~i~~~l~~~~~~ 70 (88)
T 2wiu_B 52 TTLTTFFKILQSLELSMTL 70 (88)
T ss_dssp CBHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhCCCHHH
Confidence 4445555666666555433
No 228
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.62 E-value=22 Score=27.02 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmh 287 (305)
-+++.+.+..++.+|. +.+-|+.+||+|.+|.-||.
T Consensus 41 ~Er~~I~~aL~~~~GN--------~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRN--------VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHHHTTSC--------HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHH
Confidence 3456666777776665 46789999999999977764
No 229
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.55 E-value=6.8 Score=33.38 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=38.2
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
...||+.|++.|.-+++- ...++.+..+||+.+++|..++|-+.|++-
T Consensus 171 ~~~Lt~~e~~vl~~~~~g----------~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG----------KTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT----------CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 467999999997665432 245688999999999999999998877653
No 230
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=24.35 E-value=17 Score=30.57 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=6.6
Q ss_pred ccccccccccccccc
Q 021941 111 LEALKCAACECHRNF 125 (305)
Q Consensus 111 ~~al~CaACgCHRnF 125 (305)
.-.|+|.|||.+|..
T Consensus 122 ~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 122 SWYIVCLACGAQTPV 136 (139)
T ss_dssp TTTSSCCC-------
T ss_pred eEEEEecCCCCCCcc
Confidence 348999999988753
No 231
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.14 E-value=24 Score=24.69 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 021941 245 QKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 245 QkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmh 287 (305)
+++.+....++.||. +.+.|..+||+|.+|.-||.
T Consensus 20 E~~~i~~aL~~~~gn--------~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLREYDYD--------LKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHTTTC--------HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHHCcCHHHHHHHHH
Confidence 445555556665554 56889999999999988875
No 232
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=23.99 E-value=18 Score=31.47 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=32.9
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+..=..+-++++++.|.++=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 114 ~~~~~~~~r~~il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~sK 164 (311)
T 4ich_A 114 AGEPQSEARRRILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPSK 164 (311)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CccchhhHHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCCH
Confidence 3344466677776654443111 13345689999999999999998888764
No 233
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=23.95 E-value=34 Score=28.91 Aligned_cols=51 Identities=6% Similarity=0.092 Sum_probs=29.1
Q ss_pred CCccCcCCCHHHH-HHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 234 KKRFRTKFTQEQK-DKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 234 kKR~RTkFT~EQk-ekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+++.|..+|.++. +.-.+.+.+ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~-----~G~~~~s~~~IA~~aGvs~~tlY~hF~~K 60 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDT-----VGERGLTFRALAERLATGPGAIYWHITGK 60 (237)
T ss_dssp -------CCHHHHHHHHHHHHHH-----TTTTTCCHHHHHHHHTSCGGGGGGTCCCH
T ss_pred CCCCCCccCHHHHHHHHHHHHHh-----cCcccCCHHHHHHHHCCChHHHHHhcCCH
Confidence 3444555665542 222333333 24455689999999999999998887663
No 234
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=23.95 E-value=11 Score=29.32 Aligned_cols=46 Identities=2% Similarity=0.129 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 10 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 10 NNKRTELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 56677777755554333 24455689999999999999998888763
No 235
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.88 E-value=1e+02 Score=20.38 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
|.|||++|-+ . +.+.+++.+|+++..+-|-|+...
T Consensus 12 s~eqk~~l~~---~-----------i~~~l~~~lg~~~~~v~V~i~e~~ 46 (61)
T 2opa_A 12 TDEQKRNLVE---K-----------VTEAVKETTGASEEKIVVFIEEMR 46 (61)
T ss_dssp CHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHH---H-----------HHHHHHHHhCcCcCeEEEEEEEcC
Confidence 7899987643 3 555678889999988888777554
No 236
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=23.70 E-value=9.2 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 245 QKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 245 QkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
-++++++-|.+|=++ +.-+.-.++++|.+.||++.+|-..|.|.
T Consensus 17 ~r~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (213)
T 2qtq_A 17 ARDLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGNK 60 (213)
T ss_dssp HHHHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCCH
Confidence 355555533332111 23455579999999999999998887763
No 237
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=23.63 E-value=12 Score=28.76 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-|+++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 9 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (196)
T 3col_A 9 MNKQVKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFKNK 54 (196)
T ss_dssp -CHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhCCH
Confidence 34456666544443111 24455689999999999999998888763
No 238
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=23.50 E-value=14 Score=29.69 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=39.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVKN 296 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~kK 296 (305)
..+|..+++.|.-+++.. ..++++++++++.+++++.+.|=+.|++-+
T Consensus 153 ~~Lt~rE~~vl~~l~~g~----------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL----------PNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 469999999988888752 267889999999999999998887776543
No 239
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.42 E-value=32 Score=23.04 Aligned_cols=27 Identities=26% Similarity=0.705 Sum_probs=18.6
Q ss_pred eeccccccccCCCCCCcccccccccc--cccccccc
Q 021941 95 IFDGCGEFMPSGDEGTLEALKCAACE--CHRNFHRK 128 (305)
Q Consensus 95 a~DGCgEFmp~~~~gt~~al~CaACg--CHRnFHrk 128 (305)
.=|=|++||- ..|+|..|+ ||+--+.+
T Consensus 16 ~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 16 FCDICQKFLL-------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp ECTTSSSEEC-------SEEECTTTTCCBCSTTSSS
T ss_pred CCCCcccccc-------cCCEeCCCCCeEChhHHhh
Confidence 3467999986 369999985 55554444
No 240
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.22 E-value=35 Score=26.68 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=30.3
Q ss_pred CcCCCHHHHHHHHHHHHH-hCCccCCCCHHHHHHHHHHh----C--CCCceEEEecccccc
Q 021941 238 RTKFTQEQKDKMMEFAEK-VGWRFQKQDDDQVDKFCAEV----G--VKRHVFKVWMHNNKN 291 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEk-lGWRiqk~de~~ve~fC~ei----G--V~r~V~KVWmhNnK~ 291 (305)
+.++|.|+++.+.++.+. -.|.. .++.++|..+- | |+..++.-|++....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~----~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFA----WEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCH----HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhCcchhH----HHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 567899999999997654 23321 22333332221 5 788888888876543
No 241
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=23.21 E-value=18 Score=28.80 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=..-+.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 10 ~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK 56 (220)
T 3lsj_A 10 QQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDM 56 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSH
T ss_pred HhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 45677788877775321123456789999999999999998888764
No 242
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.13 E-value=1e+02 Score=20.29 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 242 TQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 242 T~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
|.|||++|.+ . +.+.+++.+|++...+-|.|+...
T Consensus 12 s~e~k~~l~~---~-----------i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 12 TDEQKETLIR---Q-----------VSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp CHHHHHHHHH---H-----------HHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEEeC
Confidence 7899987654 3 455677788999888877776543
No 243
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.11 E-value=71 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCccCCCCHH--HHHHHHHHhCCCC
Q 021941 247 DKMMEFAEKVGWRFQKQDDD--QVDKFCAEVGVKR 279 (305)
Q Consensus 247 ekM~~fAEklGWRiqk~de~--~ve~fC~eiGV~r 279 (305)
+.|++||.+-.=.|.+..+. ..++.|..|||++
T Consensus 41 ~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDP 75 (233)
T 1u5t_A 41 ERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDP 75 (233)
T ss_dssp HHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCC
Confidence 34567999954444444332 6788899999984
No 244
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.02 E-value=78 Score=24.01 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 021941 241 FTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNK 290 (305)
Q Consensus 241 FT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK 290 (305)
.|.|||++|-+ . .-+.+.+.+||++..+-|.|+...
T Consensus 68 ~t~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 2xcz_A 68 LDGSRTQEVSE---L-----------VCGHIEQNLGIPADRIYIGFEDVP 103 (115)
T ss_dssp CCTTHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEECC
Confidence 46899977543 3 455678889999999999888665
No 245
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.96 E-value=51 Score=25.86 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCCceEEEecccccc
Q 021941 267 QVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 267 ~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
+.+.||++.||....|+.+|...|-
T Consensus 52 Lm~aY~~~~g~~~~~vrF~FDG~rI 76 (97)
T 2jxx_A 52 LMSHYEEAMGLSGRKLSFFFDGTKL 76 (97)
T ss_dssp HHHHHHHHTTCSSSCCEEEETTEEC
T ss_pred HHHHHHHHHCCCcccEEEEECCEEc
Confidence 3444555566778889999977664
No 246
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.90 E-value=13 Score=29.61 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-|+++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 9 ~~tR~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~t~Y~~F~sK 54 (210)
T 3vib_A 9 LKTKEHLMLAALETFYR-KGIARTSLNEIAQAAGVTRDALYWHFKNK 54 (210)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHHHHCCCH
Confidence 34466776644443222 14455689999999999999998888764
No 247
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=22.54 E-value=24 Score=26.71 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 021941 263 QDDDQVDKFCAEVGVKRH 280 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~ 280 (305)
+..+.+..+|.-+||+..
T Consensus 61 p~~~~l~~ia~~l~v~~~ 78 (114)
T 3vk0_A 61 IALSNIEKMAAALGVAAY 78 (114)
T ss_dssp CCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 455666666666666543
No 248
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=22.44 E-value=23 Score=24.78 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 021941 269 DKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 269 e~fC~eiGV~r~V~KVWmhN 288 (305)
++||..+||++.++.-|..+
T Consensus 28 ~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHCC
Confidence 45555556665555555543
No 249
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=22.33 E-value=46 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.1
Q ss_pred cCcCCCHHHHHHHHHHHHH
Q 021941 237 FRTKFTQEQKDKMMEFAEK 255 (305)
Q Consensus 237 ~RTkFT~EQkekM~~fAEk 255 (305)
+--.+|+|||+++.+..++
T Consensus 115 iy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 115 MYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHTTSCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHH
Confidence 3457999999999996555
No 250
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=22.22 E-value=54 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCceEEEeccccccc
Q 021941 265 DDQVDKFCAEVGVKRHVFKVWMHNNKNN 292 (305)
Q Consensus 265 e~~ve~fC~eiGV~r~V~KVWmhNnK~~ 292 (305)
+.+.+.||.+.||+...++.+|...+-.
T Consensus 25 ~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 25 SKLMKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 3567778888888999999999877653
No 251
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.17 E-value=23 Score=30.13 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=11.9
Q ss_pred ccccccccccccccc
Q 021941 111 LEALKCAACECHRNF 125 (305)
Q Consensus 111 ~~al~CaACgCHRnF 125 (305)
.-.|+|.|||..|.-
T Consensus 123 ~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 123 FHFLKCEACGAETPI 137 (148)
T ss_dssp SBCCCCSSSCCCCCC
T ss_pred EEEEEecCCCCCccc
Confidence 348999999987654
No 252
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.09 E-value=97 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.7
Q ss_pred ccCcCCCHHHHHHHHHHHHHhC
Q 021941 236 RFRTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 236 R~RTkFT~EQkekM~~fAEklG 257 (305)
-.|..||+|+-++|+.+.+..|
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g 28 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMP 28 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 3467899999999999998865
No 253
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=22.01 E-value=73 Score=21.28 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=18.1
Q ss_pred CcCCCHHHHHHHHHHHHHhC
Q 021941 238 RTKFTQEQKDKMMEFAEKVG 257 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklG 257 (305)
|..||+|.-++|+++.++.|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G 22 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNG 22 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999976
No 254
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.90 E-value=7.8 Score=30.10 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++-++++++-|.++=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 2 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 47 (189)
T 3geu_A 2 NAMKDKIIDNAITLFSE-KGYDGTTLDDIAKSVNIKKASLYYHFDSK 47 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHTTCCHHHHTTTCSSH
T ss_pred chHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHhCCH
Confidence 45667777655553111 13344579999999999999998888654
No 255
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=21.86 E-value=50 Score=26.32 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQ 261 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiq 261 (305)
.+++|.+++++++|+++|+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~G~~~~ 159 (174)
T 1gka_B 138 QTSGPAVEKTAAVFNKNGVEFS 159 (174)
T ss_dssp CSSSHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3578999999999999998654
No 256
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=21.82 E-value=2.6 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 58 (215)
T 3e7q_A 13 EQRKALLIEATLACLKR-HGFQGASVRKICAEAGVSVGLINHHYDGK 58 (215)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 45577777755554111 13445578999999999999998888753
No 257
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=21.81 E-value=23 Score=30.90 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=12.8
Q ss_pred cccccccccccccccc
Q 021941 111 LEALKCAACECHRNFH 126 (305)
Q Consensus 111 ~~al~CaACgCHRnFH 126 (305)
.-.|+|.|||.+|.-.
T Consensus 117 ~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 117 TIGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEEETTTCCCCCSC
T ss_pred EEEEEccccCCccccc
Confidence 4479999999888764
No 258
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=21.75 E-value=64 Score=26.48 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=28.0
Q ss_pred CcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHH
Q 021941 238 RTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAE 274 (305)
Q Consensus 238 RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~e 274 (305)
+++||..|+++|-.-|-..|-+-.+.......+|=..
T Consensus 7 ~~~~t~~qLqkkfkHa~DFGi~~t~~N~~t~~~feda 43 (107)
T 1v74_A 7 SGRFSRKQLDKKYKHAGDFGISDTKKNRETLTKFRDA 43 (107)
T ss_dssp BTTBCHHHHHHHGGGGGGGTCCCCCCSHHHHHHHHHH
T ss_pred CCcccHHHHHhHhcccccccccccccChhhHHHHHHH
Confidence 5899999999998877777777667777666665443
No 259
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.71 E-value=28 Score=26.17 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHhCCCCce
Q 021941 263 QDDDQVDKFCAEVGVKRHV 281 (305)
Q Consensus 263 ~de~~ve~fC~eiGV~r~V 281 (305)
+..+.+.++|.-+||+..-
T Consensus 63 ~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 63 VSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp CCHHHHHHHHHHHTCCGGG
T ss_pred cCHHHHHHHHHHHCcCHHH
Confidence 4566677777777776543
No 260
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=21.64 E-value=64 Score=25.52 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRF 260 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRi 260 (305)
..++|.++++++||+++|...
T Consensus 126 ~~~~~~~~~f~~~~~~~G~~~ 146 (162)
T 3o22_A 126 TPRAELKEKFTAFCKAQGFTE 146 (162)
T ss_dssp SCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 478999999999999988754
No 261
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=21.57 E-value=62 Score=28.33 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQK 262 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk 262 (305)
-.||+||+..+..-+++.|+.|.+
T Consensus 176 ~~Fseeql~~~n~~l~q~G~~~~~ 199 (203)
T 1p5s_A 176 LSFTDEDVSIIVRRLRQSNVILPN 199 (203)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCC
Confidence 359999999999999999999765
No 262
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=21.29 E-value=15 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 021941 245 QKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHN 288 (305)
Q Consensus 245 QkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhN 288 (305)
-++++++-|.+|=++ +.-+.--++++|.+.||++.+|-.+|-|
T Consensus 15 ~R~~Il~AA~~lf~~-~G~~~~s~~~IA~~AGvs~~tlY~~F~s 57 (208)
T 3v6g_A 15 RRQAIVEAAERVIAR-QGLGGLSHRRVAAEANVPVGSTTYYFND 57 (208)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 356666633332111 1445568999999999999999888865
No 263
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=21.12 E-value=83 Score=26.07 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmh 287 (305)
.||+|||++ +|+. +-+.++.-+|+++.-+.|.|+
T Consensus 11 ~~t~eqK~a---La~~-----------It~a~~e~~~vP~~~v~Vif~ 44 (149)
T 3mf7_A 11 RLTPSAKHA---VAKA-----------ITDAHRGLTGTQHFLAQVNFQ 44 (149)
T ss_dssp TSCHHHHHH---HHHH-----------HHHHHHHTCCTTCCCCEEEEE
T ss_pred CCCHHHHHH---HHHH-----------HHHHHHHHHCcChHHEEEEEE
No 264
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.99 E-value=25 Score=24.61 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=8.4
Q ss_pred HHHHHhCCCCceEEEecc
Q 021941 270 KFCAEVGVKRHVFKVWMH 287 (305)
Q Consensus 270 ~fC~eiGV~r~V~KVWmh 287 (305)
+|+..+||++..+.-|..
T Consensus 32 elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 32 ELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHC
Confidence 444444444444444443
No 265
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=20.98 E-value=95 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCce
Q 021941 240 KFTQEQKDKMME-FAEKVGWRFQKQDD-DQVDKFCAEVGVKRHV 281 (305)
Q Consensus 240 kFT~EQkekM~~-fAEklGWRiqk~de-~~ve~fC~eiGV~r~V 281 (305)
.||.++.-+|+. ..+.|+|++.-+.- .-++.|+..++++...
T Consensus 126 ~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 169 (254)
T 2f2c_A 126 CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169 (254)
T ss_dssp -CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhh
Confidence 589999999998 88999999987665 6788999999987653
No 266
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.96 E-value=63 Score=23.65 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCceEEEecccccc
Q 021941 267 QVDKFCAEVGVKRHVFKVWMHNNKN 291 (305)
Q Consensus 267 ~ve~fC~eiGV~r~V~KVWmhNnK~ 291 (305)
+.+.||.+.||....++.+|...+-
T Consensus 34 l~~~y~~~~gi~~~~~rf~fdG~~l 58 (79)
T 3a4r_A 34 LMSHYEEAMGLSGHKLSFFFDGTKL 58 (79)
T ss_dssp HHHHHHHHHTCTTCCCEEEETTEEC
T ss_pred HHHHHHHHhCCCcccEEEEECCEEc
Confidence 4556677778888889999877654
No 267
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=20.88 E-value=65 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 021941 240 KFTQEQKDKMMEFAEKVGWRF 260 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRi 260 (305)
..++|.+++++++|+++|...
T Consensus 163 ~l~~e~~~~f~~~~~~~G~~~ 183 (198)
T 3cbc_A 163 ELTSELKENFIRFSKSLGLPE 183 (198)
T ss_dssp CCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 488999999999999988654
No 268
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.85 E-value=23 Score=30.48 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.5
Q ss_pred ccccccccccccccccc
Q 021941 111 LEALKCAACECHRNFHR 127 (305)
Q Consensus 111 ~~al~CaACgCHRnFHr 127 (305)
.-.|+|.|||.+|...-
T Consensus 124 ~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 124 TIGNSCKACGYRGMLDT 140 (157)
T ss_dssp EEEEECSSSCCEEECCC
T ss_pred EEEEEccCCCCCCcccc
Confidence 44799999999887653
No 269
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=20.84 E-value=1.7e+02 Score=26.04 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCc
Q 021941 240 KFTQEQKDKMME-FAEKVGWRFQKQDD-DQVDKFCAEVGVKRH 280 (305)
Q Consensus 240 kFT~EQkekM~~-fAEklGWRiqk~de-~~ve~fC~eiGV~r~ 280 (305)
.||.++.-+|+. ..+.|+|++.-+.- .-+..|++..+++..
T Consensus 125 ~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 125 ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 489999999998 89999999988765 688999999988754
No 270
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.77 E-value=16 Score=28.21 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 243 QEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 243 ~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
.+-++++++-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 6 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 51 (199)
T 3qbm_A 6 QETRERVVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFESK 51 (199)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred hhHHHHHHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCCCH
Confidence 45566666655443222 24556689999999999999998888763
No 271
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=20.76 E-value=64 Score=24.10 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=25.3
Q ss_pred cCCCHHHHHHHHHHHHHhCC---ccCCCCHHHHHHHHHHhCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGW---RFQKQDDDQVDKFCAEVGVK 278 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGW---Riqk~de~~ve~fC~eiGV~ 278 (305)
|.||++|++++...+..+-- +-.+-+..++..+...+|+.
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~ 43 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGIN 43 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCC
Confidence 57899999999987766432 22233446667777777764
No 272
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=20.67 E-value=9.6 Score=30.28 Aligned_cols=45 Identities=4% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 15 ~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sK 59 (221)
T 3c2b_A 15 PRQNAVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGDR 59 (221)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCH
Confidence 4466666644443211 24455689999999999999998888764
No 273
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=20.62 E-value=11 Score=29.68 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 246 KDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 246 kekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++++++-|.+|=|+--. + -.++++|++.||++.+|-.+|.|.
T Consensus 17 r~~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 45555533333222233 4 589999999999999998888663
No 274
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=20.55 E-value=70 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccC
Q 021941 240 KFTQEQKDKMMEFAEKVGWRFQ 261 (305)
Q Consensus 240 kFT~EQkekM~~fAEklGWRiq 261 (305)
.+++|.++++++||+.+|....
T Consensus 122 ~l~~e~~~~f~~~~~~~G~~~~ 143 (156)
T 1bj7_A 122 SFTPEELEKYQQLNSERGVPNE 143 (156)
T ss_dssp CCCHHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3789999999999999886543
No 275
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.50 E-value=8 Score=31.65 Aligned_cols=48 Identities=4% Similarity=-0.042 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccCCC
Q 021941 239 TKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNNKNNTVK 295 (305)
Q Consensus 239 TkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNnK~~~~k 295 (305)
.++++.|++.+.-.+- +..-.++++..+||++.+++.+++.-+.++++
T Consensus 186 ~~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh---------cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3577778777766331 23356889999999999999999888777654
No 276
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.46 E-value=11 Score=28.87 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 246 KDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 246 kekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
++++++-|.++=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 11 r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 53 (195)
T 3ppb_A 11 KQAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPSK 53 (195)
T ss_dssp HHHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 55555544443111 23455679999999999999998888764
No 277
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=20.33 E-value=43 Score=27.68 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCHHHHHH---HHHHHHHhCCccCCCCHHHHHHHHHHhCCC-CceEEEecc
Q 021941 240 KFTQEQKDK---MMEFAEKVGWRFQKQDDDQVDKFCAEVGVK-RHVFKVWMH 287 (305)
Q Consensus 240 kFT~EQkek---M~~fAEklGWRiqk~de~~ve~fC~eiGV~-r~V~KVWmh 287 (305)
.+|..|++. +.++-++.|+.. ..++||+.+||+ +.++.-|+.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~p------s~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPP------TRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCC------CHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCc------cHHHHHHHhCCCChHHHHHHHH
Confidence 478888754 444445556531 257899999998 787777764
No 278
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.33 E-value=9 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 021941 244 EQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVGVKRHVFKVWMHNN 289 (305)
Q Consensus 244 EQkekM~~fAEklGWRiqk~de~~ve~fC~eiGV~r~V~KVWmhNn 289 (305)
+-++++++-|.+|=|+--. .-.++++|++.||++.+|-..|.|.
T Consensus 16 ~~r~~Il~aA~~lf~~~G~--~~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 16 RNYDRIIEAAAAEVARHGA--DASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHHHHHHHGG--GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHhcCC--CCCHHHHHHHhCCchHHHHHHCCCH
Confidence 3356666644444333233 3589999999999999998777653
No 279
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=20.10 E-value=1.9e+02 Score=21.62 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred CccCcCCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC
Q 021941 235 KRFRTKFTQEQKDKMMEFAEKVGWRFQKQDDDQVDKFCAEVG 276 (305)
Q Consensus 235 KR~RTkFT~EQkekM~~fAEklGWRiqk~de~~ve~fC~eiG 276 (305)
...+..||+|+-++|++..++.| .....+++.||
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G--------~~W~~IA~~v~ 48 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK--------DDWNKVSEHVG 48 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS--------SCHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC--------CCHHHHHHHcC
Confidence 45678999999999999999977 12455566665
Done!