BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021942
         (305 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NW59|ATF4_DANRE Cyclic AMP-dependent transcription factor ATF-4 OS=Danio rerio
           GN=atf4 PE=2 SV=1
          Length = 339

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 203 APQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKK---IYDKKFSE----LSGNDIFKGDV 255
           APQD  T V VL PAG   S+S +   V+ T K+   I D   S+    +SG+   + D+
Sbjct: 174 APQDEHTEVPVLHPAGIMLSLSPSHIVVLLTPKEEQNISDCSDSDSGISVSGSPAHQSDL 233

Query: 256 PPSSAEKPLS 265
            PSS  KP S
Sbjct: 234 EPSSRAKPYS 243


>sp|Q96Q77|CIB3_HUMAN Calcium and integrin-binding family member 3 OS=Homo sapiens
           GN=CIB3 PE=2 SV=3
          Length = 187

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 129 ISPKKPTTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGH-------DIFAPPPE 181
           + P   TT P+V    EL G++    +   +++I+   S++  GH       D+F+   E
Sbjct: 41  LVPLDYTTCPDVKVPYELIGSMPELKDNPFRQRIAQVFSEDGDGHMTLDNFLDMFSVMSE 100

Query: 182 ILPRPAVRALALK-ENFNLGDS-APQDVQTSVGVLTPAG 218
           + PR      A K  +FN  D     D++ +V  LT  G
Sbjct: 101 MAPRDLKAYYAFKIYDFNNDDYICAWDLEQTVTKLTRGG 139


>sp|P18305|443R_IIV6 Uncharacterized protein 443R OS=Invertebrate iridescent virus 6
            GN=IIV6-443R PE=3 SV=2
          Length = 2432

 Score = 32.0 bits (71), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 204  PQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFKGDVPPSSAEKP 263
            P    T++G +  +GD  S S+   P++K++      K  +LSG D+    + P+ A   
Sbjct: 1335 PNATTTTLGKIQLSGDFDSTSTATVPIIKSATSSIQGKI-QLSG-DLTGSSISPTVAAGA 1392

Query: 264  LSVAKLREMSG 274
            +++AK+  +SG
Sbjct: 1393 ITLAKMANLSG 1403


>sp|A8ER74|GCP_ARCB4 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
           OS=Arcobacter butzleri (strain RM4018) GN=gcp PE=3 SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 219 DQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFKGDVPPSSA 260
           D SSI+ TE   +KT+K IY KK S+   + I+ G VP  +A
Sbjct: 10  DDSSIAITE---IKTNKLIYHKKISQELQHSIYGGVVPELAA 48


>sp|A9KBM3|TRUB_COXBN tRNA pseudouridine synthase B OS=Coxiella burnetii (strain Dugway
           5J108-111) GN=truB PE=3 SV=1
          Length = 309

 Score = 31.2 bits (69), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 196 NFNLGDSAPQDVQTSVGVLTPAGDQSSISSTEEPVMKTSKKIYDKKFSELSG 247
            F LG      V+  +GV T +GD  S   TE P+ K +K+  +K  S   G
Sbjct: 70  QFLLGADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLSAFRG 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,762,922
Number of Sequences: 539616
Number of extensions: 5092580
Number of successful extensions: 10106
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 10053
Number of HSP's gapped (non-prelim): 125
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)