Query 021942
Match_columns 305
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rfp_A Putative NTP pyrophosph 9.7 1.6E+02 0.0054 25.8 2.5 22 276-297 130-151 (171)
2 1xf5_L Protein L, monoclonal a 9.7 40 0.0014 25.8 -1.1 18 273-290 22-39 (80)
3 2ptl_A Protein L; binding prot 8.2 63 0.0022 24.7 -0.6 19 272-290 20-38 (78)
4 1hz6_A Protein L; four strande 8.0 57 0.002 24.6 -0.9 17 274-290 16-32 (72)
5 2e2s_A Agelenin; cystine knot, 7.2 1.2E+02 0.004 20.4 0.5 12 68-79 17-28 (36)
6 3nl9_A Putative NTP pyrophosph 7.1 2.4E+02 0.0081 24.2 2.5 21 277-297 131-151 (171)
7 3d8l_A ORF12; lactococcal phag 7.0 72 0.0025 24.8 -0.8 19 160-178 3-22 (91)
8 1ica_A Insect defensin A; anti 5.8 1.5E+02 0.0052 20.2 0.5 7 14-20 2-8 (40)
9 2ln4_A Coprisin; antimicrobial 5.7 1.7E+02 0.0057 20.5 0.6 9 14-22 2-10 (44)
10 2k0q_A Putative uncharacterize 5.2 1.3E+02 0.0046 23.1 -0.1 24 274-297 17-41 (74)
No 1
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=9.72 E-value=1.6e+02 Score=25.75 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.9
Q ss_pred cccCCCCCCccccCCCcccCCC
Q 021942 276 NIFADGKVESRDYLGGVRKPPG 297 (305)
Q Consensus 276 dIFadgk~~~Rd~~gg~rkpPG 297 (305)
-+|.|||+-.|..-|=|-||||
T Consensus 130 Kl~~dGkp~~r~~dgKvlK~~~ 151 (171)
T 2rfp_A 130 KLGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp TCCTTSSCCBCTTTCCBCCCTT
T ss_pred hcCCCCCeeecCCCCceeCCCC
Confidence 3789999998887888999997
No 2
>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune SYS; 2.60A {Finegoldia magna} PDB: 1xct_L 1xcq_L
Probab=9.70 E-value=40 Score=25.84 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=13.3
Q ss_pred cCCcccCCCCCCccccCC
Q 021942 273 SGSNIFADGKVESRDYLG 290 (305)
Q Consensus 273 sGsdIFadgk~~~Rd~~g 290 (305)
--+-||||||-+.-.+-|
T Consensus 22 k~nli~adgktqtaefkg 39 (80)
T 1xf5_L 22 KVNLIFADGKIQTAEFKG 39 (80)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEEEecCceEeeeecC
Confidence 346799999988766654
No 3
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna} SCOP: d.15.7.1
Probab=8.15 E-value=63 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=14.0
Q ss_pred ccCCcccCCCCCCccccCC
Q 021942 272 MSGSNIFADGKVESRDYLG 290 (305)
Q Consensus 272 msGsdIFadgk~~~Rd~~g 290 (305)
|--+-|||||+-+.-.+-|
T Consensus 20 ikanli~adg~tqtaefkg 38 (78)
T 2ptl_A 20 IKANLIFANGSTQTAEFKG 38 (78)
T ss_dssp EEEEEECSSSCCEEEEEEE
T ss_pred EEEEEEEccCceeeeeecC
Confidence 3356799999988766654
No 4
>1hz6_A Protein L; four stranded beta-sheet with central alpha helix, binds KAP chain of immunoglobulins, protein binding; 1.70A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1hz5_A 1k53_A 1k51_A 1k52_A 1jml_A 1k50_A 2jzp_A 2kac_A 1kh0_A 1ymh_E 1mhh_E* 1hez_E 1ynt_E
Probab=7.99 E-value=57 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=12.7
Q ss_pred CCcccCCCCCCccccCC
Q 021942 274 GSNIFADGKVESRDYLG 290 (305)
Q Consensus 274 GsdIFadgk~~~Rd~~g 290 (305)
-+-|||||+-+.-++-|
T Consensus 16 anlifadg~tqtaefkg 32 (72)
T 1hz6_A 16 ANLIFANGSTQTAEFKG 32 (72)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred EEEEEecCceeeeeeee
Confidence 45699999988766654
No 5
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=7.22 E-value=1.2e+02 Score=20.44 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=10.2
Q ss_pred CCCCcccccccc
Q 021942 68 KPCSGYKMKEMT 79 (305)
Q Consensus 68 Kq~S~aK~KEmS 79 (305)
+=||+-|+|||+
T Consensus 17 rCCsgl~CKeL~ 28 (36)
T 2e2s_A 17 RCCSGLKCKELS 28 (36)
T ss_dssp CBCTTCCEEEEE
T ss_pred cccCCCceeeee
Confidence 568999999986
No 6
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=7.12 E-value=2.4e+02 Score=24.17 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.3
Q ss_pred ccCCCCCCccccCCCcccCCC
Q 021942 277 IFADGKVESRDYLGGVRKPPG 297 (305)
Q Consensus 277 IFadgk~~~Rd~~gg~rkpPG 297 (305)
+|.|||+-.|+.=|=|=|||+
T Consensus 131 l~~dgk~i~~~~dgKvlK~~~ 151 (171)
T 3nl9_A 131 LGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp CCTTSSCCBCTTTTCBCCCTT
T ss_pred cCCCCCeeeCCCCCcccCCCC
Confidence 578999988877788889887
No 7
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=6.96 E-value=72 Score=24.77 Aligned_cols=19 Identities=47% Similarity=0.711 Sum_probs=15.2
Q ss_pred hhhhhh-hhhhccCCCCCCC
Q 021942 160 KQISDA-KSKELSGHDIFAP 178 (305)
Q Consensus 160 KqlS~A-K~KELSGsdIFAp 178 (305)
||||.| |+|-++|.|+|--
T Consensus 3 kqlstarkfkmitgkdlfqq 22 (91)
T 3d8l_A 3 KQLSTARKFKMITGKDLFQQ 22 (91)
T ss_dssp CCCCHHHHHHHHHSSCHHHH
T ss_pred chhhhhhhhhhhccHHHHHH
Confidence 677765 7899999999954
No 8
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=5.81 E-value=1.5e+02 Score=20.22 Aligned_cols=7 Identities=57% Similarity=0.510 Sum_probs=5.1
Q ss_pred ccccccc
Q 021942 14 TADLLVW 20 (305)
Q Consensus 14 tadll~w 20 (305)
|-|||+|
T Consensus 2 tCdlls~ 8 (40)
T 1ica_A 2 TCDLLSG 8 (40)
T ss_dssp CCSCSST
T ss_pred eEEeecc
Confidence 5688876
No 9
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=5.66 E-value=1.7e+02 Score=20.50 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.7
Q ss_pred ccccccccC
Q 021942 14 TADLLVWSE 22 (305)
Q Consensus 14 tadll~w~~ 22 (305)
|-|||+|.-
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 679999743
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=5.22 E-value=1.3e+02 Score=23.09 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=19.2
Q ss_pred CCcccCCCCCCccccCCC-cccCCC
Q 021942 274 GSNIFADGKVESRDYLGG-VRKPPG 297 (305)
Q Consensus 274 GsdIFadgk~~~Rd~~gg-~rkpPG 297 (305)
=--||-|||-.--|-+|. +|-+||
T Consensus 17 tvyiFKDGKMamEdk~Gra~~m~~G 41 (74)
T 2k0q_A 17 KVHVFKDGKMGMENKFGKSMNMPEG 41 (74)
T ss_dssp EEEEETTSCEEEECTTSCEECCCBT
T ss_pred EEEEEcCCceehhhhcCceEEcCCC
Confidence 346999999999898985 677776
Done!