Query 021942
Match_columns 305
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 11:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021942.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021942hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 30.3 19 0.0014 24.0 3.1 41 14-60 7-47 (61)
2 d1efaa1 a.35.1.5 (A:2-60) Lac 8.5 66 0.0048 21.5 1.4 17 133-149 1-17 (59)
3 d1mhhe_ d.15.7.1 (E:) Immunogl 7.9 27 0.002 24.2 -0.9 16 275-290 7-22 (63)
4 d1hz6a_ d.15.7.1 (A:) Immunogl 7.6 29 0.0021 24.3 -0.9 16 275-290 12-27 (67)
5 d1icaa_ g.3.7.4 (A:) Defensin 4.6 97 0.007 19.7 0.5 9 14-22 2-10 (40)
6 d1gjja2 a.140.1.1 (A:111-153) 4.5 91 0.0066 19.9 0.3 19 228-246 22-40 (43)
7 d1oj4a2 d.58.26.5 (A:164-283) 3.9 91 0.0066 22.6 -0.1 11 10-20 14-24 (120)
8 d1t6sa1 a.4.5.60 (A:1-85) Segr 3.9 1.7E+02 0.013 19.9 1.5 18 260-277 19-36 (85)
9 d1mmsa1 a.4.7.1 (A:71-140) Rib 3.5 1.7E+02 0.012 20.1 1.0 20 231-250 32-51 (70)
10 d1ueka2 d.58.26.5 (A:149-268) 3.1 1.2E+02 0.0089 21.4 -0.1 8 78-85 82-91 (120)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=30.34 E-value=19 Score=24.01 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=29.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEeCcccchHH
Q 021942 14 TADLLVWSETPPSDSPAQASSTRSSVRGQPSDGISKVVFGGQVTDEE 60 (305)
Q Consensus 14 tadll~w~~~~~~~~~~~~~~~R~~~~~Qp~~giS~i~fg~~~T~e~ 60 (305)
-|||.-|...--.+ ...-.++ +|++.||..|.-.|++..+.
T Consensus 7 ~ADlvvfDp~~i~d---~~~~~~~---~~~~~Gi~~v~VnG~~v~~~ 47 (61)
T d1m7ja2 7 YADLVVFDPATVAD---SATFEHP---TERAAGIHSVYVNGAAVWED 47 (61)
T ss_dssp BCCEEEECTTTCBC---CCCSSST---TCCCBSEEEEEETTEEEEET
T ss_pred CCCEEEECHHHccC---ccccccc---ccccceeEEEEECCEEEEEC
Confidence 58998885332222 2355677 99999999999999986643
No 2
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.46 E-value=66 Score=21.52 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCCCchHHHhhhccCCc
Q 021942 133 KPTTLPEVAKQRELSGT 149 (305)
Q Consensus 133 Kp~s~~evAkqrelsg~ 149 (305)
|++++.+||++.|.|..
T Consensus 1 k~~Ti~diA~~agvS~s 17 (59)
T d1efaa1 1 KPVTLYDVAEYAGVSYQ 17 (59)
T ss_dssp CCCCHHHHHHTTTSCHH
T ss_pred CCCCHHHHHHHHCCCHH
Confidence 67899999998887654
No 3
>d1mhhe_ d.15.7.1 (E:) Immunoglobulin light chain-binding domain of protein L {Peptostreptococcus magnus [TaxId: 1260]}
Probab=7.88 E-value=27 Score=24.20 Aligned_cols=16 Identities=44% Similarity=0.912 Sum_probs=12.0
Q ss_pred CcccCCCCCCccccCC
Q 021942 275 SNIFADGKVESRDYLG 290 (305)
Q Consensus 275 sdIFadgk~~~Rd~~g 290 (305)
+=|||||+.+.-.+-|
T Consensus 7 NlifadG~tQtAeFkG 22 (63)
T d1mhhe_ 7 NLIFADGKIQTAEFKG 22 (63)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEEcCCcEEEEEEee
Confidence 5699999988766543
No 4
>d1hz6a_ d.15.7.1 (A:) Immunoglobulin light chain-binding domain of protein L {Peptostreptococcus magnus [TaxId: 1260]}
Probab=7.58 E-value=29 Score=24.32 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.1
Q ss_pred CcccCCCCCCccccCC
Q 021942 275 SNIFADGKVESRDYLG 290 (305)
Q Consensus 275 sdIFadgk~~~Rd~~g 290 (305)
+-|||||+.+.-.+-|
T Consensus 12 NlifadG~tQtAeFKG 27 (67)
T d1hz6a_ 12 NLIFANGSTQTAEFKG 27 (67)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEEcCCcEEEEEEee
Confidence 5699999988766543
No 5
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]}
Probab=4.60 E-value=97 Score=19.73 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=6.5
Q ss_pred ccccccccC
Q 021942 14 TADLLVWSE 22 (305)
Q Consensus 14 tadll~w~~ 22 (305)
|-|||+|--
T Consensus 2 TCDllS~~~ 10 (40)
T d1icaa_ 2 TCDLLSGTG 10 (40)
T ss_dssp CCSCSSTTS
T ss_pred ceeecccCC
Confidence 678888754
No 6
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.51 E-value=91 Score=19.93 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=16.3
Q ss_pred ccchhhhhhhhhhhhcccc
Q 021942 228 EPVMKTSKKIYDKKFSELS 246 (305)
Q Consensus 228 ~~~~kt~kki~~~K~~el~ 246 (305)
-|++.+.++++-+|++.|.
T Consensus 22 GPIt~sTR~vy~kkL~~l~ 40 (43)
T d1gjja2 22 GPIVGTTRKLYEKKLLKLR 40 (43)
T ss_dssp CCCCSSEHHHHHHHEHHHH
T ss_pred CCcCcchHHHHHHHHHHHH
Confidence 5889999999999988764
No 7
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=3.90 E-value=91 Score=22.60 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=8.1
Q ss_pred CCCCccccccc
Q 021942 10 PHTSTADLLVW 20 (305)
Q Consensus 10 ~h~stadll~w 20 (305)
-|.||++.+..
T Consensus 14 ~~vST~~if~~ 24 (120)
T d1oj4a2 14 VSIPTPVIFKD 24 (120)
T ss_dssp CCCCHHHHHTC
T ss_pred CCcChHHHHhC
Confidence 46788888765
No 8
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=3.87 E-value=1.7e+02 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=14.1
Q ss_pred CCCcchhhhhhhccCCcc
Q 021942 260 AEKPLSVAKLREMSGSNI 277 (305)
Q Consensus 260 ~ek~ls~Akl~emsGsdI 277 (305)
+++|||..+|.++.|.+|
T Consensus 19 s~~Pls~~~L~~~l~~~~ 36 (85)
T d1t6sa1 19 SEEPVNLQTLSQITAHKF 36 (85)
T ss_dssp CSSCBCHHHHHHHTTCCC
T ss_pred cCCCCCHHHHHHHHccCC
Confidence 367899999999887654
No 9
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.47 E-value=1.7e+02 Score=20.12 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhccccCCCC
Q 021942 231 MKTSKKIYDKKFSELSGNDI 250 (305)
Q Consensus 231 ~kt~kki~~~K~~el~Gn~I 250 (305)
++....|-..|..||+.+||
T Consensus 32 ~~qv~eIAk~K~~dl~~~~l 51 (70)
T d1mmsa1 32 RKQIEEIAKTKMPDLNANSL 51 (70)
T ss_dssp HHHHHHHHHHHGGGCCCSSH
T ss_pred HHHHHHHHHHHhcccCCCCH
Confidence 46677888889999998874
No 10
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=3.07 E-value=1.2e+02 Score=21.38 Aligned_cols=8 Identities=63% Similarity=1.236 Sum_probs=0.0
Q ss_pred ccCcc--CCC
Q 021942 78 MTGSG--IFA 85 (305)
Q Consensus 78 mSGsg--IFa 85 (305)
||||| +|+
T Consensus 82 mSGSGst~F~ 91 (120)
T d1ueka2 82 MSGSGSAFFG 91 (120)
T ss_dssp ECTTSSCEEE
T ss_pred ecCCCCeEEE
Done!