BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021943
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQF
FKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVG
VAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGW
IYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVY
WGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLV
NFVCA

High Scoring Gene Products

Symbol, full name Information P value
AT4G13150 protein from Arabidopsis thaliana 1.1e-66

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021943
        (305 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119315 - symbol:AT4G13150 "AT4G13150" species...   678  1.1e-66   1


>TAIR|locus:2119315 [details] [associations]
            symbol:AT4G13150 "AT4G13150" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 IPI:IPI00518136 RefSeq:NP_193051.4
            UniGene:At.43323 PRIDE:F4JS93 EnsemblPlants:AT4G13150.1
            GeneID:826929 KEGG:ath:AT4G13150 Uniprot:F4JS93
        Length = 347

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 140/215 (65%), Positives = 167/215 (77%)

Query:    83 DSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTS-F 141
             D+  E+ + + DE  +N+ V  SG G  F+ KL + +G+A  IT++S+ LK    G S F
Sbjct:    53 DNDSEKSRDSKDED-ENERV--SGKGVPFIVKLGLGLGLAMIITVISVALKGSGGGGSPF 109

Query:   142 G-VQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEAL 200
               V+ LA+ SSSS       GF+F  FG +F++P  APGW+YFWLLMAAG GLF+SEEAL
Sbjct:   110 EEVKSLAKVSSSS------EGFTFNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEAL 163

Query:   201 NIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKS 260
             NIWV I+LAR+LTLDGTWQSFAESFSRNAPYIVSTV WVYWGVC+SDMIPFY+GKLF +S
Sbjct:   164 NIWVGITLARMLTLDGTWQSFAESFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQS 223

Query:   261 GASDDVCSKLGISKEKALSITQSVQKYGNLIGFGE 295
             GASDDVCSKLGI KEKALSITQ+VQKYGNL GF E
Sbjct:   224 GASDDVCSKLGIGKEKALSITQAVQKYGNLSGFVE 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       293   0.00091  115 3  11 22  0.38    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  207 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.00u 0.17s 23.17t   Elapsed:  00:00:01
  Total cpu time:  23.00u 0.17s 23.17t   Elapsed:  00:00:01
  Start:  Fri May 10 21:17:04 2013   End:  Fri May 10 21:17:05 2013

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