BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021943
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
           Hexapeptide
          Length = 305

 Score = 31.2 bits (69), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFGELKS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF +L S
Sbjct: 148 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 194


>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
 pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
          Length = 308

 Score = 30.8 bits (68), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFGELKS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF +L S
Sbjct: 150 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 196


>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
 pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
          Length = 310

 Score = 30.8 bits (68), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFGELKS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF +L S
Sbjct: 152 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 198


>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
 pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
          Length = 404

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFGELKS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF +L S
Sbjct: 246 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 292


>pdb|2V57|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|C Chain C, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|D Chain D, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2WGB|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
 pdb|2WGB|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
          Length = 190

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)

Query: 174 PEYAPGWIY--FWLLMAAG 190
           PEY PGW    FW LM AG
Sbjct: 141 PEYPPGWARRVFWALMQAG 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,571,070
Number of Sequences: 62578
Number of extensions: 329266
Number of successful extensions: 742
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)