Query 021943
Match_columns 305
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0586 DedA Uncharacterized m 99.2 1.6E-11 3.5E-16 106.3 6.5 100 180-297 18-120 (208)
2 PRK10847 hypothetical protein; 98.9 9.7E-09 2.1E-13 89.3 8.4 90 191-297 45-134 (219)
3 PF09335 SNARE_assoc: SNARE as 97.8 1.6E-05 3.4E-10 60.5 3.1 76 197-299 3-81 (123)
4 PRK11624 cdsA CDP-diglyceride 85.7 0.5 1.1E-05 43.7 2.0 38 233-276 151-188 (285)
5 COG0398 Uncharacterized conser 85.4 0.71 1.5E-05 41.5 2.8 56 237-297 86-141 (223)
6 COG1238 Predicted membrane pro 81.1 0.38 8.2E-06 42.1 -0.7 54 241-298 60-114 (161)
7 COG0575 CdsA CDP-diglyceride s 78.4 1.4 3E-05 39.9 2.0 27 235-261 135-161 (265)
8 PF03616 Glt_symporter: Sodium 59.1 47 0.001 32.0 7.9 95 189-289 267-368 (368)
9 PRK12880 3-oxoacyl-(acyl carri 57.6 6 0.00013 37.0 1.6 26 264-291 276-301 (353)
10 PRK10535 macrolide transporter 56.9 9.8 0.00021 38.4 3.1 29 103-131 265-293 (648)
11 PF13908 Shisa: Wnt and FGF in 55.0 8.7 0.00019 32.6 2.0 26 107-132 74-99 (179)
12 PRK10814 outer membrane-specif 54.2 13 0.00027 34.4 3.0 24 108-131 25-48 (399)
13 PLN03173 chalcone synthase; Pr 51.2 11 0.00025 36.2 2.4 27 265-291 312-338 (391)
14 PLN03172 chalcone synthase fam 45.9 15 0.00033 35.4 2.3 27 265-291 312-338 (393)
15 PF12244 DUF3606: Protein of u 45.1 17 0.00038 26.8 2.0 23 265-290 25-47 (57)
16 cd00831 CHS_like Chalcone and 44.2 18 0.00039 33.2 2.4 29 264-292 295-323 (361)
17 PLN03168 chalcone synthase; Pr 41.9 20 0.00043 34.4 2.4 28 264-291 310-337 (389)
18 PLN02932 3-ketoacyl-CoA syntha 40.2 21 0.00045 36.0 2.4 27 264-290 385-411 (478)
19 TIGR02213 lolE_release lipopro 38.4 31 0.00066 32.2 3.0 27 105-131 16-45 (411)
20 PLN02594 phosphatidate cytidyl 37.5 19 0.00041 35.4 1.6 34 236-276 127-160 (342)
21 PF01148 CTP_transf_1: Cytidyl 37.4 31 0.00067 29.2 2.7 25 236-260 132-156 (259)
22 PF05473 Herpes_UL45: UL45 pro 37.1 51 0.0011 29.6 4.1 31 101-132 40-71 (200)
23 PLN03171 chalcone synthase-lik 35.9 27 0.00059 33.5 2.4 32 261-292 318-349 (399)
24 CHL00203 fabH 3-oxoacyl-acyl-c 35.7 21 0.00046 32.2 1.5 25 264-291 260-284 (326)
25 PLN03170 chalcone synthase; Pr 35.1 29 0.00062 33.6 2.3 28 264-291 315-342 (401)
26 TIGR00747 fabH 3-oxoacyl-(acyl 31.9 17 0.00037 32.2 0.3 25 264-291 253-277 (318)
27 cd00830 KAS_III Ketoacyl-acyl 31.6 25 0.00054 30.9 1.3 25 264-291 257-281 (320)
28 PRK11146 outer membrane-specif 31.3 47 0.001 30.8 3.0 22 110-131 25-46 (412)
29 PLN03169 chalcone synthase fam 31.3 37 0.0008 32.5 2.4 29 263-291 316-344 (391)
30 PLN02953 phosphatidate cytidyl 30.8 40 0.00087 34.0 2.7 38 232-276 267-304 (403)
31 PF02797 Chal_sti_synt_C: Chal 30.8 33 0.00072 29.3 1.8 28 264-291 74-101 (151)
32 PRK05963 3-oxoacyl-(acyl carri 30.6 29 0.00063 31.1 1.5 25 263-290 260-284 (326)
33 PF08541 ACP_syn_III_C: 3-Oxoa 28.4 15 0.00032 27.2 -0.6 24 264-290 25-48 (90)
34 TIGR02212 lolCE lipoprotein re 27.5 61 0.0013 29.5 3.0 22 110-131 24-45 (411)
35 PF12359 DUF3645: Protein of u 26.9 19 0.00042 25.3 -0.2 19 78-96 11-29 (34)
36 PLN02377 3-ketoacyl-CoA syntha 26.6 34 0.00074 34.8 1.4 27 264-290 409-435 (502)
37 PRK12879 3-oxoacyl-(acyl carri 25.8 35 0.00076 30.3 1.2 37 251-291 247-283 (325)
38 PF12046 DUF3529: Protein of u 25.7 58 0.0013 29.5 2.5 56 76-139 55-110 (173)
39 PF03918 CcmH: Cytochrome C bi 25.6 38 0.00083 29.2 1.3 69 204-302 34-102 (148)
40 TIGR03434 ADOP Acidobacterial 25.3 65 0.0014 32.3 3.0 27 105-131 14-40 (803)
41 KOG1597 Transcription initiati 24.5 51 0.0011 32.4 2.1 33 264-296 208-240 (308)
42 PRK04262 hypothetical protein; 24.1 34 0.00075 31.4 0.8 29 262-291 241-269 (347)
43 TIGR03322 alt_F1F0_F0_C altern 23.8 1.5E+02 0.0032 24.0 4.3 63 180-252 5-67 (86)
44 PRK15470 emtA lytic murein end 23.6 50 0.0011 30.2 1.7 14 180-193 5-18 (203)
45 PLN02192 3-ketoacyl-CoA syntha 22.4 53 0.0011 33.7 1.8 30 262-291 411-440 (511)
46 PRK12346 transaldolase A; Prov 22.0 1.1E+02 0.0024 29.7 3.8 40 247-293 172-221 (316)
47 cd00957 Transaldolase_TalAB Tr 21.9 59 0.0013 31.3 1.9 40 247-293 171-220 (313)
48 COG0332 FabH 3-oxoacyl-[acyl-c 21.9 56 0.0012 31.6 1.8 25 263-290 256-280 (323)
49 TIGR03147 cyt_nit_nrfF cytochr 21.7 69 0.0015 27.6 2.1 73 196-298 26-98 (126)
50 PRK05269 transaldolase B; Prov 21.5 56 0.0012 31.4 1.7 40 247-293 173-222 (318)
51 COG4591 LolE ABC-type transpor 21.5 84 0.0018 31.1 2.9 28 104-131 20-47 (408)
52 cd00929 Cyt_c_Oxidase_VIIc Cyt 21.3 97 0.0021 22.6 2.5 29 225-255 13-41 (46)
53 TIGR00874 talAB transaldolase. 21.2 79 0.0017 30.6 2.6 40 247-293 171-220 (317)
54 MTH00193 ND1 NADH dehydrogenas 21.1 65 0.0014 30.3 2.0 38 133-184 37-75 (306)
55 PRK10144 formate-dependent nit 21.0 72 0.0016 27.5 2.1 34 265-298 65-98 (126)
56 PRK09352 3-oxoacyl-(acyl carri 20.5 53 0.0011 29.1 1.2 25 264-291 253-277 (319)
57 PLN02854 3-ketoacyl-CoA syntha 20.4 41 0.0009 34.5 0.6 27 264-290 425-451 (521)
58 PRK09258 3-oxoacyl-(acyl carri 20.2 41 0.00088 30.3 0.5 25 264-291 273-297 (338)
59 PF05552 TM_helix: Conserved T 20.2 79 0.0017 22.4 1.9 36 229-264 15-50 (53)
No 1
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.23 E-value=1.6e-11 Score=106.27 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHHHHhc---CCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhh
Q 021943 180 WIYFWLLMAAG---SGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKL 256 (305)
Q Consensus 180 wv~F~LLmlAG---~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL 256 (305)
+..|.++.+-. ++.||.+|++++.+|.++++ ..-.....+++...|+.++|.+.||+||.
T Consensus 18 ~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~-----------------g~~~~~~~i~~~~lga~lGd~i~Y~iGr~ 80 (208)
T COG0586 18 LGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQ-----------------GKLNLWLVILVATLGALLGDLISYWIGRR 80 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444 89999999999999999998 34455678899999999999999999999
Q ss_pred hcccCCCcchhhhccCChHHHHHHHHHHHhhcceeEEeeee
Q 021943 257 FTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELK 297 (305)
Q Consensus 257 ~~qsga~~r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeRF 297 (305)
+|++.....+..+. +++++++|.++.+||||+.+-|++||
T Consensus 81 ~G~~~l~~~~~~~~-~~~~~l~~a~~~f~r~G~~~vf~~RF 120 (208)
T COG0586 81 FGRKLLRKLWSYRL-LKRKKLDKAELLFERHGLFAIFLGRF 120 (208)
T ss_pred hcHHHHHhhhhhcc-CCHHHHHHHHHHHHHcCchhhhhhcc
Confidence 99999987776666 89999999999999999999999999
No 2
>PRK10847 hypothetical protein; Provisional
Probab=98.86 E-value=9.7e-09 Score=89.33 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=73.6
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhc
Q 021943 191 SGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKL 270 (305)
Q Consensus 191 ~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKl 270 (305)
.+.|+..|.+++.+|+++++. .........+++.+.|+.++|++.|++||.+|++..... ..|.
T Consensus 45 ~~~~lPge~~l~~~G~la~~~---------------~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~-~~~~ 108 (219)
T PRK10847 45 VTPFLPGDSLLFVAGALASLP---------------TNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNP-NSKI 108 (219)
T ss_pred cCCCCCchHHHHHHHHHHhCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhcc-cccc
Confidence 456789999999999998862 011234456788899999999999999999998876532 2444
Q ss_pred cCChHHHHHHHHHHHhhcceeEEeeee
Q 021943 271 GISKEKALSITQSVQKYGNLIGFGELK 297 (305)
Q Consensus 271 gis~EK~~kI~~~vqKYGnLtgfVeRF 297 (305)
++++++++..+.++|||..+.++.||
T Consensus 109 -~~~~~l~~~~~~~~r~G~~~v~i~Rf 134 (219)
T PRK10847 109 -FRRSYLDKTHQFYEKHGGKTIILARF 134 (219)
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 78899999999999999999999999
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=97.81 E-value=1.6e-05 Score=60.45 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943 197 EEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK 276 (305)
Q Consensus 197 Edal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK 276 (305)
.|++++.+|.+..- | ..++..+.|+.++|++.|++||.++++... +|+ ..+++
T Consensus 3 ~~~~~~~~g~~~g~-------~---------------~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~----~~~-~~~~~ 55 (123)
T PF09335_consen 3 GSILLIAAGALFGP-------W---------------LGFLIATLGAVLGSLLAYLLGRYFGRRRLR----RKL-RKKKR 55 (123)
T ss_pred hHHHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHh-cchHH
Confidence 56777777777633 2 367778899999999999999999984333 555 55555
Q ss_pred HHH---HHHHHHhhcceeEEeeeeee
Q 021943 277 ALS---ITQSVQKYGNLIGFGELKSL 299 (305)
Q Consensus 277 ~~k---I~~~vqKYGnLtgfVeRFs~ 299 (305)
.++ +.+.+||||.+..++.||.-
T Consensus 56 ~~~~~~~~~~~~~~g~~~l~~~~~~P 81 (123)
T PF09335_consen 56 IKRIERIERWFQKYGFWVLFLSRFIP 81 (123)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555 99999999999888877653
No 4
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=85.69 E-value=0.5 Score=43.74 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943 233 VSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK 276 (305)
Q Consensus 233 is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK 276 (305)
...+++++.-+|.+|.-+|+.||.+|+...- -| |||+|
T Consensus 151 ~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~----P~--ISPkK 188 (285)
T PRK11624 151 AWWLLYVMILVWGADSGAYMFGKLFGKHKLA----PK--VSPGK 188 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----Cc--CCCCC
Confidence 3467888888999999999999999987665 34 56666
No 5
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=0.71 Score=41.55 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=45.1
Q ss_pred HHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHHHHHHHHHHHhhcceeEEeeee
Q 021943 237 LWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELK 297 (305)
Q Consensus 237 lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeRF 297 (305)
+..+-|.-++..++|+++|.++++... +++ -++|+++++.+-.+|+|....+.-|.
T Consensus 86 ~~s~~G~~~gs~~~Fll~R~~gr~~~~----~~~-~~~~~~~~~~~~~~~~g~~~i~~lrl 141 (223)
T COG0398 86 LYSLIGATAGSTLAFLLARYLGRDWVL----KFV-GGKEKVQRIDAGLERNGFWAILLLRL 141 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHh-cccHHHHHHHHHHHhCChHHHHHHHH
Confidence 344567788899999999999987665 555 45689999999999999887776664
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=81.07 E-value=0.38 Score=42.07 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHhhhcchhhhhhhhhhcccCCCcchhhhccCChHHHHHHHH-HHHhhcceeEEeeeee
Q 021943 241 WGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQ-SVQKYGNLIGFGELKS 298 (305)
Q Consensus 241 wG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK~~kI~~-~vqKYGnLtgfVeRFs 298 (305)
-|.-++.++.|++||...+.... +|.--++|+.++..+ .|+|||.++.++-=|.
T Consensus 60 ~gs~lG~~~~y~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp 114 (161)
T COG1238 60 LGSVLGGLVNYALGRFLPEFIAR----RWFPGSEEALEKLQEKWYRRYGVWTLLLSWLP 114 (161)
T ss_pred HHhhHhHHHHHHHHhcchHHHHH----HhhcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36668899999999999888777 354345788888887 9999999887654433
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=78.37 E-value=1.4 Score=39.90 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhcccC
Q 021943 235 TVLWVYWGVCISDMIPFYLGKLFTKSG 261 (305)
Q Consensus 235 ~~lwvywG~~isdmIpFYiGKL~~qsg 261 (305)
..+.+.-++|.+|+-+|+.||.+|++-
T Consensus 135 ~~l~l~~~vw~~Di~Ayf~Gr~fGk~k 161 (265)
T COG0575 135 LLLLLFLGVWAGDIGAYFVGRRFGKHK 161 (265)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCC
Confidence 456677899999999999999999984
No 8
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=59.14 E-value=47 Score=31.98 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred hcCCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhh-hhhhhcccCCCcchh
Q 021943 189 AGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFY-LGKLFTKSGASDDVC 267 (305)
Q Consensus 189 AG~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFY-iGKL~~qsga~~r~~ 267 (305)
.+..- |+.+.++...|+++.-+++.-= -| =+...-.+|..-..+.+.-++.+.-...+| .-|.+|+. ++..+.
T Consensus 267 ~~~~~-id~~~i~~I~~~sL~~fl~~al--ms--l~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkd-ydaavm 340 (368)
T PF03616_consen 267 TGKYK-IDRKTIDRISGISLDLFLAMAL--MS--LKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKD-YDAAVM 340 (368)
T ss_pred hCccc-CCHHHHHHHHHHHHHHHHHHHH--Hh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC-hhHHHH
Confidence 34433 8999999998887765432100 00 001112233322222222222222223333 35677665 665554
Q ss_pred ------hhccCChHHHHHHHHHHHhhcc
Q 021943 268 ------SKLGISKEKALSITQSVQKYGN 289 (305)
Q Consensus 268 ------SKlgis~EK~~kI~~~vqKYGn 289 (305)
--+|-|++-+.-++...||||+
T Consensus 341 ~~G~~G~glGatp~a~anm~~v~~~ygp 368 (368)
T PF03616_consen 341 SAGFCGFGLGATPNAMANMQAVTEKYGP 368 (368)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHhhCc
Confidence 4579999999999999999995
No 9
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=57.61 E-value=6 Score=37.01 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.4
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+.+|||+++||+ +..++++|||..
T Consensus 276 ~~i~~~Lgl~~ek~--~~~~l~~~GNts 301 (353)
T PRK12880 276 DCIKEELKLNDDKV--PNFIMEKYANLS 301 (353)
T ss_pred HHHHHHhCCCHHHh--hhhhHHhhCCHH
Confidence 46889999999997 446789999963
No 10
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=56.87 E-value=9.8 Score=38.41 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=24.8
Q ss_pred eecCCCchHHHHHHHHHHHHHHHHhhhhc
Q 021943 103 ETSGFGSSFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 103 e~s~~g~sFLakvaialGvAat~TiiSi~ 131 (305)
=..++-=+||..++|++|||++++++|++
T Consensus 265 l~~~k~Rs~LT~lGI~iGi~svi~~~sig 293 (648)
T PRK10535 265 MAANKMRTLLTMLGIIIGIASVVSIVVVG 293 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678999999999999999999875
No 11
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=55.01 E-value=8.7 Score=32.64 Aligned_cols=26 Identities=15% Similarity=-0.023 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcc
Q 021943 107 FGSSFLAKLTIAVGVAATITLLSIGL 132 (305)
Q Consensus 107 ~g~sFLakvaialGvAat~TiiSi~~ 132 (305)
++..+++.++|.+||++++++|-+++
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred ccceeeeeeehhhHHHHHHHhHhhhe
Confidence 56778888899999999999888777
No 12
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=54.19 E-value=13 Score=34.37 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhc
Q 021943 108 GSSFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 108 g~sFLakvaialGvAat~TiiSi~ 131 (305)
-.|+|..++|++|||+.+++.|+.
T Consensus 25 ~~s~lt~lgI~igv~~li~~~s~~ 48 (399)
T PRK10814 25 FVSWLSTIGITLGVMALVTVLSVM 48 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999983
No 13
>PLN03173 chalcone synthase; Provisional
Probab=51.21 E-value=11 Score=36.18 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.3
Q ss_pred chhhhccCChHHHHHHHHHHHhhccee
Q 021943 265 DVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 265 r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
.+..+||+++||+..-..++++|||..
T Consensus 312 ~v~~~LgL~~ekl~~s~~vl~~yGNtS 338 (391)
T PLN03173 312 QVEAKLALKPEKLRATRHVLSEYGNMS 338 (391)
T ss_pred HHHHHcCCChHHHHHHHHHHHHhCcch
Confidence 678999999999998889999999964
No 14
>PLN03172 chalcone synthase family protein; Provisional
Probab=45.94 E-value=15 Score=35.36 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred chhhhccCChHHHHHHHHHHHhhccee
Q 021943 265 DVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 265 r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
.+..+||+++||+..--..+++|||..
T Consensus 312 ~v~~~Lgl~~~~~~~s~~vl~~yGNtS 338 (393)
T PLN03172 312 QVEIKLDLKEEKLRATRHVLSDYGNMS 338 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCccH
Confidence 577999999999998889999999953
No 15
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=45.13 E-value=17 Score=26.75 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.6
Q ss_pred chhhhccCChHHHHHHHHHHHhhcce
Q 021943 265 DVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 265 r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
.|+.|+|+|++++ ..+|++.||-
T Consensus 25 ywa~~~gvt~~~L---~~AV~~vG~~ 47 (57)
T PF12244_consen 25 YWAKRFGVTEEQL---REAVRAVGNS 47 (57)
T ss_pred HHHHHHCcCHHHH---HHHHHHHCcC
Confidence 4899999999875 5678888874
No 16
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=44.24 E-value=18 Score=33.19 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=24.3
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcceeE
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLIG 292 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLtg 292 (305)
+.+.+++|+.+||+..-..++++|||...
T Consensus 295 ~~v~~~lgl~~~~~~~s~~~l~~~GN~~s 323 (361)
T cd00831 295 DAVEKALGLSPEDLEASRMVLRRYGNMSS 323 (361)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCchh
Confidence 46889999999998866678899999753
No 17
>PLN03168 chalcone synthase; Provisional
Probab=41.94 E-value=20 Score=34.40 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.6
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+..+||+++||+..=...+++|||..
T Consensus 310 ~~v~~~Lgl~~ek~~~s~~vl~~yGNtS 337 (389)
T PLN03168 310 DQVEAKLKLTKDKMQGSRDILSEFGNMS 337 (389)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCccH
Confidence 4678899999999887667899999963
No 18
>PLN02932 3-ketoacyl-CoA synthase
Probab=40.15 E-value=21 Score=36.04 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=24.9
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcce
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
+.+..+||+++|++++-...++||||-
T Consensus 385 dav~k~LgL~~~~~e~s~~tL~rfGNT 411 (478)
T PLN02932 385 DEMEKNLHLTPLDVEASRMTLHRFGNT 411 (478)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhCCh
Confidence 478899999999999999999999995
No 19
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=38.44 E-value=31 Score=32.19 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=22.4
Q ss_pred cCCCchHH---HHHHHHHHHHHHHHhhhhc
Q 021943 105 SGFGSSFL---AKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 105 s~~g~sFL---akvaialGvAat~TiiSi~ 131 (305)
+++-.+|| ..++|++|+++++++.|+.
T Consensus 16 ~~~~~s~l~~lt~lgIaigv~~lv~~~s~~ 45 (411)
T TIGR02213 16 RNPMVSLISKFSTIGIALGVAVLIVGLSAM 45 (411)
T ss_pred cCceEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777 9999999999999999964
No 20
>PLN02594 phosphatidate cytidylyltransferase
Probab=37.50 E-value=19 Score=35.37 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943 236 VLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK 276 (305)
Q Consensus 236 ~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK 276 (305)
++...--+|.+|.-+|..||.+|++-. . | |||+|
T Consensus 127 ~~l~~~lV~~nDi~AY~~G~~fGk~kL----~-~--iSPkK 160 (342)
T PLN02594 127 FLLPASLIVINDIAAYLFGFFFGRTPL----I-K--LSPKK 160 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCC----C-c--cCCCC
Confidence 444455688999999999999998743 2 4 68887
No 21
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=37.44 E-value=31 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHhhhcchhhhhhhhhhccc
Q 021943 236 VLWVYWGVCISDMIPFYLGKLFTKS 260 (305)
Q Consensus 236 ~lwvywG~~isdmIpFYiGKL~~qs 260 (305)
++.....+|++|-.++.+||.+|++
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445566789999999999999998
No 22
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=37.08 E-value=51 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=18.4
Q ss_pred ceeecCCCchHHHHH-HHHHHHHHHHHhhhhcc
Q 021943 101 TVETSGFGSSFLAKL-TIAVGVAATITLLSIGL 132 (305)
Q Consensus 101 e~e~s~~g~sFLakv-aialGvAat~TiiSi~~ 132 (305)
+.+.|... .++.++ .+++|+..++++|...+
T Consensus 40 ~~~~s~~~-~~~~~~~~~~~Gili~~~vii~~l 71 (200)
T PF05473_consen 40 EKRKSPCA-CFLFIICGILIGILITIFVIIATL 71 (200)
T ss_pred cccCCCcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 344444 58889888887776553
No 23
>PLN03171 chalcone synthase-like protein; Provisional
Probab=35.91 E-value=27 Score=33.50 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=25.0
Q ss_pred CCCcchhhhccCChHHHHHHHHHHHhhcceeE
Q 021943 261 GASDDVCSKLGISKEKALSITQSVQKYGNLIG 292 (305)
Q Consensus 261 ga~~r~~SKlgis~EK~~kI~~~vqKYGnLtg 292 (305)
..-+.+..+||+++||+..=...+++|||...
T Consensus 318 ~il~~v~~~Lgl~~ek~~~s~~~l~~yGNtss 349 (399)
T PLN03171 318 AILDQVDAALGLEPEKLAASRRVLSDYGNMFG 349 (399)
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHhCcchh
Confidence 33456889999999998755578999999654
No 24
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=35.75 E-value=21 Score=32.24 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=20.4
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+..+||+++||+. ..+++|||..
T Consensus 260 ~~~~~~lgl~~~k~~---~~l~~~Gn~~ 284 (326)
T CHL00203 260 EAIANRLSVPNSKMI---TNLEKYGNTS 284 (326)
T ss_pred HHHHHHhCCCHHHhh---hHHHhhCcHH
Confidence 358899999999885 4789999963
No 25
>PLN03170 chalcone synthase; Provisional
Probab=35.11 E-value=29 Score=33.55 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.2
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+..+||+++||+..--.++++|||..
T Consensus 315 ~~v~~~Lgl~~~~~~~s~~~l~~~GNts 342 (401)
T PLN03170 315 DQVEAKVGLEKERMRATRHVLSEYGNMS 342 (401)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhCccH
Confidence 4688999999999988778999999963
No 26
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=31.91 E-value=17 Score=32.23 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=20.6
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+++.++||+.+||+. ..+++|||+.
T Consensus 253 ~~~~~~lgi~~~k~~---~~~~~~Gn~~ 277 (318)
T TIGR00747 253 EALAKRLELDMSQVV---KTVHKYGNTS 277 (318)
T ss_pred HHHHHHcCCCHHHee---ehHhhhCCHH
Confidence 367899999999987 4689999973
No 27
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=31.63 E-value=25 Score=30.86 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=20.1
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+++++|+.+||+. ..+++|||+.
T Consensus 257 ~~~~~~lgl~~~~~~---~~~~~~Gn~~ 281 (320)
T cd00830 257 EAVAKRLGLPEEKVV---VNLDRYGNTS 281 (320)
T ss_pred HHHHHHhCCCHHHhh---hhHHhhCcHH
Confidence 358899999998874 5789999974
No 28
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=31.35 E-value=47 Score=30.82 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc
Q 021943 110 SFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 110 sFLakvaialGvAat~TiiSi~ 131 (305)
++|+.++|++|++++++++|+.
T Consensus 25 ~~ls~lgI~igv~~li~~~s~~ 46 (412)
T PRK11146 25 SVISTIGIALGVAVLIVGLSAM 46 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999886
No 29
>PLN03169 chalcone synthase family protein; Provisional
Probab=31.34 E-value=37 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred CcchhhhccCChHHHHHHHHHHHhhccee
Q 021943 263 SDDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 263 ~~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
-+.+..+||+.+||+..=-.++++|||..
T Consensus 316 l~~v~~~Lgl~~ek~~~s~~~l~~~GNts 344 (391)
T PLN03169 316 LNRLEKKLKLAPEKLECSRRALMDYGNVS 344 (391)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCch
Confidence 34677899999999765556889999964
No 30
>PLN02953 phosphatidate cytidylyltransferase
Probab=30.83 E-value=40 Score=34.04 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943 232 IVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK 276 (305)
Q Consensus 232 ~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK 276 (305)
-...++.++-.+|.+|..+|+.||.+|+.... + |+|+|
T Consensus 267 Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~-----~--ISPkK 304 (403)
T PLN02953 267 GLVATLISFSGVIATDTFAFLGGKAFGRTPLT-----S--ISPKK 304 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----c--CCCCC
Confidence 45556677778999999999999999987542 3 67777
No 31
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=30.76 E-value=33 Score=29.33 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=22.0
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+-.+||+++++++-=.+.++.|||..
T Consensus 74 d~v~~~L~L~~~~l~~Sr~vLr~yGNmS 101 (151)
T PF02797_consen 74 DAVEEALGLSPEQLRASREVLREYGNMS 101 (151)
T ss_dssp HHHHHHHTS-GGGGHHHHHHHHHH-B-G
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 4566899999999999999999999974
No 32
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=30.62 E-value=29 Score=31.12 Aligned_cols=25 Identities=40% Similarity=0.822 Sum_probs=20.3
Q ss_pred CcchhhhccCChHHHHHHHHHHHhhcce
Q 021943 263 SDDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 263 ~~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
-+.+.++||+.+||+. ..+++|||.
T Consensus 260 ~~~~~~~l~l~~~k~~---~~l~~~Gn~ 284 (326)
T PRK05963 260 VDKVCETIGIPRAKAA---STLETYGNS 284 (326)
T ss_pred HHHHHHHcCCCHHHhh---hhHHhhCcH
Confidence 3457899999999975 567999996
No 33
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=28.36 E-value=15 Score=27.23 Aligned_cols=24 Identities=33% Similarity=0.717 Sum_probs=15.3
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcce
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
+.++.++|+++||. ...+++|||.
T Consensus 25 ~~~~~~lgi~~~~~---~~~~~~~Gn~ 48 (90)
T PF08541_consen 25 DSIAKRLGIPPERF---PDNLAEYGNT 48 (90)
T ss_dssp HHHHHHHTS-GGGB---E-THHHH-B-
T ss_pred HHHHHHcCCcHHHH---HHHHhccCcc
Confidence 34788999999955 3456999986
No 34
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=27.47 E-value=61 Score=29.46 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc
Q 021943 110 SFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 110 sFLakvaialGvAat~TiiSi~ 131 (305)
+.|+.++|++|+|+++++.|+.
T Consensus 24 t~lt~lgI~lgv~~l~~~~~~~ 45 (411)
T TIGR02212 24 SLFSIIGIALGVAALIVVLSVM 45 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999998873
No 35
>PF12359 DUF3645: Protein of unknown function (DUF3645) ; InterPro: IPR022105 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a conserved HPD sequence motif.
Probab=26.90 E-value=19 Score=25.30 Aligned_cols=19 Identities=11% Similarity=0.494 Sum_probs=15.0
Q ss_pred CCCCCCCCcccccccchHH
Q 021943 78 NYVPEDSPDEQDQLANDEI 96 (305)
Q Consensus 78 nyeakd~~~~~d~~asdEi 96 (305)
-|.|||+|+++-+++..++
T Consensus 11 Pf~akd~Ps~~sEf~hPDv 29 (34)
T PF12359_consen 11 PFRAKDVPSPRSEFSHPDV 29 (34)
T ss_pred eeecCCCCCccccccCCCE
Confidence 4889999999988776443
No 36
>PLN02377 3-ketoacyl-CoA synthase
Probab=26.57 E-value=34 Score=34.77 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=24.3
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcce
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
+.+..+||+++++.++....++||||.
T Consensus 409 d~v~k~LgL~~~~~e~sr~tL~r~GNT 435 (502)
T PLN02377 409 DELEKNLQLLPVHVEASRMTLHRFGNT 435 (502)
T ss_pred HHHHHHcCCCcccchHHHHHHHhcCCc
Confidence 467789999999999999999999995
No 37
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.81 E-value=35 Score=30.31 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=24.9
Q ss_pred hhhhhhhcccCCCcchhhhccCChHHHHHHHHHHHhhccee
Q 021943 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 251 FYiGKL~~qsga~~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+++--..+.+.. +.+++++|+++||+.. .+++|||..
T Consensus 247 ~~~~h~~~~~~~-~~~~~~lg~~~~~~~~---~~~~~Gn~~ 283 (325)
T PRK12879 247 WVIPHQANLRII-ESLCEKLGIPMEKTLV---SVEYYGNTS 283 (325)
T ss_pred EEEECCCCHHHH-HHHHHHcCCCHHHhhh---hHhhhCchH
Confidence 344333333333 4788999999998865 579999963
No 38
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=25.69 E-value=58 Score=29.54 Aligned_cols=56 Identities=34% Similarity=0.350 Sum_probs=39.8
Q ss_pred CCCCCCCCCCcccccccchHHHhccceeecCCCchHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 021943 76 DENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGT 139 (305)
Q Consensus 76 ~enyeakd~~~~~d~~asdEi~~n~e~e~s~~g~sFLakvaialGvAat~TiiSi~~Kqps~G~ 139 (305)
.+||+.+|..-+++ .|.=.+.|++|..=|-||.-++ ++|.+.++.|+|+. .|..|.
T Consensus 55 ~r~y~v~~~d~~~~-----~itFeG~V~pS~~lA~fLt~l~-~~Gl~cl~LVL~~l--~P~~g~ 110 (173)
T PF12046_consen 55 QRNYRVAEGDAEGE-----VITFEGFVAPSWFLAIFLTFLA-AIGLACLGLVLSIL--FPDLGW 110 (173)
T ss_pred hcCceecccCcccc-----EEEEEEEecCcHhHHHHHHHHH-HHHHHHHHHHHHHH--cCCccc
Confidence 46887765433332 3555678888888888887665 78999999999987 455553
No 39
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=25.63 E-value=38 Score=29.21 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHHHHHHHHH
Q 021943 204 VSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQS 283 (305)
Q Consensus 204 ~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK~~kI~~~ 283 (305)
+=-+...+-|+.+.=||+++| +++... || ...+.+++--++.+-+=+.++
T Consensus 34 ~~~l~~~LrCp~Cq~qsi~~s---~a~~A~-------------dm--------------R~~I~~~l~~G~s~~eI~~~~ 83 (148)
T PF03918_consen 34 ARELAKELRCPVCQNQSIADS---NAPIAR-------------DM--------------RREIREMLAEGKSDEEIIDYF 83 (148)
T ss_dssp HHHHHHCCE-TTTTS-CTTT-----SHHHH-------------HH--------------HHHHHHHHHHT--HHHHHHHH
T ss_pred HHHHHhcccCCCCCCCchhhc---CcHHHH-------------HH--------------HHHHHHHHHcCCCHHHHHHHH
Confidence 344556677888888888888 333211 11 234445554455555667899
Q ss_pred HHhhcceeEEeeeeeeeee
Q 021943 284 VQKYGNLIGFGELKSLVNF 302 (305)
Q Consensus 284 vqKYGnLtgfVeRFs~~~~ 302 (305)
++|||..+..-=.++-.|.
T Consensus 84 v~rYG~~Vl~~Pp~~~~~~ 102 (148)
T PF03918_consen 84 VERYGEFVLYEPPFKGFTW 102 (148)
T ss_dssp HHHHTTT-EES--S-----
T ss_pred HHhcCcceeecCCCCccHH
Confidence 9999999988666555443
No 40
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=25.26 E-value=65 Score=32.28 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhhhc
Q 021943 105 SGFGSSFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 105 s~~g~sFLakvaialGvAat~TiiSi~ 131 (305)
.++..++|..+++|+|+|+..+++++.
T Consensus 14 ~~k~~s~l~i~glaigi~~~~~i~~~~ 40 (803)
T TIGR03434 14 RSPGFTAVAVLTLALGIGANTAIFSVV 40 (803)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999873
No 41
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=24.54 E-value=51 Score=32.41 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.5
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcceeEEeee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLIGFGEL 296 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeR 296 (305)
-|+||+|+++++-....++..||+.++...-||
T Consensus 208 ~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gR 240 (308)
T KOG1597|consen 208 PRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGR 240 (308)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccccCC
Confidence 489999999999999999999999998776666
No 42
>PRK04262 hypothetical protein; Provisional
Probab=24.12 E-value=34 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCcchhhhccCChHHHHHHHHHHHhhccee
Q 021943 262 ASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 262 a~~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
.-+.+.++||+.+||+.. +.++++|||.-
T Consensus 241 ~~~~~~~~Lgl~~ek~~~-~~~~~~~GNt~ 269 (347)
T PRK04262 241 FPLRVAKMLGFTKEQVKP-GLLTPYIGNTY 269 (347)
T ss_pred HHHHHHHHcCCCHHHhhc-cchhhhhCChH
Confidence 445688999999999853 23689999963
No 43
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=23.76 E-value=1.5e+02 Score=24.00 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhh
Q 021943 180 WIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFY 252 (305)
Q Consensus 180 wv~F~LLmlAG~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFY 252 (305)
|+-.+..+.+|+.+=+..=.--|..|...+. ..|+-.|+||..-.+.--.+.|+-+.+-++.|
T Consensus 5 ~~~~~~~igagl~~gla~igagiG~G~~~~~----------a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~ 67 (86)
T TIGR03322 5 IIAVASIVTAGLTIAIGSIGPALGEGRAVAQ----------ALTALAQQPDASNTITRTLFVGLAMIESTAIY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666654433333333444555554 58899999999855555566777666655544
No 44
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=23.57 E-value=50 Score=30.24 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCc
Q 021943 180 WIYFWLLMAAGSGL 193 (305)
Q Consensus 180 wv~F~LLmlAG~nl 193 (305)
|+.|+++|+|||+-
T Consensus 5 ~~~~~~~~~~~~~~ 18 (203)
T PRK15470 5 WFAFLIVLLAGCSS 18 (203)
T ss_pred HHHHHHHHHhcccC
Confidence 88899999999986
No 45
>PLN02192 3-ketoacyl-CoA synthase
Probab=22.39 E-value=53 Score=33.67 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCcchhhhccCChHHHHHHHHHHHhhccee
Q 021943 262 ASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 262 a~~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
.-+.+..+||++++..++....++||||-.
T Consensus 411 IId~v~k~LgL~~~~~e~sr~tL~rfGNTS 440 (511)
T PLN02192 411 VLDELEKNLQLSDWHMEPSRMTLYRFGNTS 440 (511)
T ss_pred HHHHHHHHcCCCchhhhHHHHHHhHcCChH
Confidence 345788999999999999999999999953
No 46
>PRK12346 transaldolase A; Provisional
Probab=22.01 E-value=1.1e+02 Score=29.66 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=28.3
Q ss_pred chhhhhhhhhhcccCCCcchhhhc----------cCChHHHHHHHHHHHhhcceeEE
Q 021943 247 DMIPFYLGKLFTKSGASDDVCSKL----------GISKEKALSITQSVQKYGNLIGF 293 (305)
Q Consensus 247 dmIpFYiGKL~~qsga~~r~~SKl----------gis~EK~~kI~~~vqKYGnLtgf 293 (305)
+.|+.|+||... |+.+. .-+-+.+.+|.+||++||-=|-+
T Consensus 172 ~~ISPfVgRi~d-------~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~V 221 (316)
T PRK12346 172 FLISPFVGRIYD-------WYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIV 221 (316)
T ss_pred CEEEecccHHHH-------hhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEE
Confidence 889999999953 33221 23457789999999999954433
No 47
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=21.90 E-value=59 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred chhhhhhhhhhcccCCCcchhhh----------ccCChHHHHHHHHHHHhhcceeEE
Q 021943 247 DMIPFYLGKLFTKSGASDDVCSK----------LGISKEKALSITQSVQKYGNLIGF 293 (305)
Q Consensus 247 dmIpFYiGKL~~qsga~~r~~SK----------lgis~EK~~kI~~~vqKYGnLtgf 293 (305)
+.|+.|+||+. ||..+ ..-+-+.+.+|.++|++||-=|-+
T Consensus 171 ~~ISPfVgRi~-------d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~v 220 (313)
T cd00957 171 TLISPFVGRIL-------DWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKV 220 (313)
T ss_pred CEEEeecchHH-------HhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEE
Confidence 88999999994 34322 112457799999999999965543
No 48
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=21.89 E-value=56 Score=31.56 Aligned_cols=25 Identities=44% Similarity=0.764 Sum_probs=19.2
Q ss_pred CcchhhhccCChHHHHHHHHHHHhhcce
Q 021943 263 SDDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 263 ~~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
-+.++.|||+.+||.-. .+|||||-
T Consensus 256 ~~~i~~~l~~~~~k~~~---~~~~yGNt 280 (323)
T COG0332 256 IEAIAKKLGIPEEKVVV---TVDKYGNT 280 (323)
T ss_pred HHHHHHHcCCCHHHHhh---HHHHhccc
Confidence 34678999998777654 68999994
No 49
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.67 E-value=69 Score=27.61 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChH
Q 021943 196 SEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKE 275 (305)
Q Consensus 196 SEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~E 275 (305)
+++..---+=-+...+=|+-..=||+++|=+ +... || + ..+++++--++.
T Consensus 26 ~~~~~e~r~~~L~~~LRC~vCqnqsiadS~a---~iA~-------------dm---------R-----~~Vr~~i~~G~S 75 (126)
T TIGR03147 26 HNPEQRTRAVALAKSLRCPQCQNQNLVESNS---PIAY-------------DL---------R-----HEVYSMVNEGKS 75 (126)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCChhhcCC---HHHH-------------HH---------H-----HHHHHHHHcCCC
Confidence 3344444444555666677788889888844 2211 22 1 233444433444
Q ss_pred HHHHHHHHHHhhcceeEEeeeee
Q 021943 276 KALSITQSVQKYGNLIGFGELKS 298 (305)
Q Consensus 276 K~~kI~~~vqKYGnLtgfVeRFs 298 (305)
+-+=+.+.++|||+.+.+--.++
T Consensus 76 d~eI~~~~v~RYG~~Vly~Pp~~ 98 (126)
T TIGR03147 76 NQQIIDFMTARFGDFVLYNPPFK 98 (126)
T ss_pred HHHHHHHHHHhcCCeEEecCCCC
Confidence 44557889999999998754443
No 50
>PRK05269 transaldolase B; Provisional
Probab=21.53 E-value=56 Score=31.36 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=27.8
Q ss_pred chhhhhhhhhhcccCCCcchhhh----------ccCChHHHHHHHHHHHhhcceeEE
Q 021943 247 DMIPFYLGKLFTKSGASDDVCSK----------LGISKEKALSITQSVQKYGNLIGF 293 (305)
Q Consensus 247 dmIpFYiGKL~~qsga~~r~~SK----------lgis~EK~~kI~~~vqKYGnLtgf 293 (305)
+.|+.|+||.. ||..| -.-+-+-+.+|.++|++||-=|-+
T Consensus 173 ~~ISPfVgRi~-------d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~i 222 (318)
T PRK05269 173 FLISPFVGRIL-------DWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVV 222 (318)
T ss_pred CEEEeeccHHH-------HHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceE
Confidence 89999999994 33221 113456789999999999864433
No 51
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=21.46 E-value=84 Score=31.09 Aligned_cols=28 Identities=36% Similarity=0.228 Sum_probs=22.5
Q ss_pred ecCCCchHHHHHHHHHHHHHHHHhhhhc
Q 021943 104 TSGFGSSFLAKLTIAVGVAATITLLSIG 131 (305)
Q Consensus 104 ~s~~g~sFLakvaialGvAat~TiiSi~ 131 (305)
....=.+.++-++|+|||+++++++|+.
T Consensus 20 ~~~s~i~~~s~~GI~lgV~~LIv~lsvm 47 (408)
T COG4591 20 RFISIISALSLIGIALGVAVLIVVLSVM 47 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466788889999999999999985
No 52
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=21.34 E-value=97 Score=22.62 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=22.1
Q ss_pred ccCCcchhhHHHHHHHHHhhhcchhhhhhhh
Q 021943 225 FSRNAPYIVSTVLWVYWGVCISDMIPFYLGK 255 (305)
Q Consensus 225 fs~~~~y~is~~lwvywG~~isdmIpFYiGK 255 (305)
|+.++.++.....|+|.|+.++ +||.+-|
T Consensus 13 F~~~nk~~~~~~~~~ffg~GF~--~PF~i~~ 41 (46)
T cd00929 13 FSVTNKWRLTALFHLFFGSGFS--APFIVVR 41 (46)
T ss_pred cccCccchHHHHHHHHHHHHHh--hhHHHHH
Confidence 5567788877888889999887 5777654
No 53
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.20 E-value=79 Score=30.59 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.5
Q ss_pred chhhhhhhhhhcccCCCcchhhh-c---------cCChHHHHHHHHHHHhhcceeEE
Q 021943 247 DMIPFYLGKLFTKSGASDDVCSK-L---------GISKEKALSITQSVQKYGNLIGF 293 (305)
Q Consensus 247 dmIpFYiGKL~~qsga~~r~~SK-l---------gis~EK~~kI~~~vqKYGnLtgf 293 (305)
+.|+-|+||..- |+.| . .-+-+.+.+|-++|++||-=|-+
T Consensus 171 ~~ISPFVgRi~d-------w~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~I 220 (317)
T TIGR00874 171 TLISPFVGRILD-------WYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEV 220 (317)
T ss_pred CEEEeecchHhH-------hhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEE
Confidence 889999999943 3332 1 23557889999999999864443
No 54
>MTH00193 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=21.07 E-value=65 Score=30.32 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=27.1
Q ss_pred cCCCCCCccc-cccccccCCccccccCCcceeeeecceEEeecCCChhHHHHH
Q 021943 133 KPPNLGTSFG-VQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFW 184 (305)
Q Consensus 133 Kqps~G~~f~-~~~l~~~ssss~~aa~~iGftF~~Fg~~viip~yapGwv~F~ 184 (305)
|+|.-...+| +|-++|+ .|.++|+.++|+.+.-|+|.+
T Consensus 37 ~GP~~~g~~GilQ~~~D~--------------~KLl~Ke~i~p~~~~~~~f~~ 75 (306)
T MTH00193 37 KGPNKVGFMGILQPFSDA--------------IKLFTKEQTYPLMSNYLLYYF 75 (306)
T ss_pred CCCCccCcccccchHhHH--------------HHHHHcCCcCcccccHHHHHH
Confidence 3444333466 7888885 799999999999887566544
No 55
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.02 E-value=72 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=23.0
Q ss_pred chhhhccCChHHHHHHHHHHHhhcceeEEeeeee
Q 021943 265 DVCSKLGISKEKALSITQSVQKYGNLIGFGELKS 298 (305)
Q Consensus 265 r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeRFs 298 (305)
.++.++--++.+-+=+.+.++|||+.+.+--.++
T Consensus 65 ~Vr~~i~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~ 98 (126)
T PRK10144 65 QVYSMVAEGKSEVEIIGWMTERYGDFVRYNPPLT 98 (126)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCeEEecCCCC
Confidence 3445554455555667899999999998754444
No 56
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.54 E-value=53 Score=29.13 Aligned_cols=25 Identities=44% Similarity=0.692 Sum_probs=20.0
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
++++++||+++||+. ..+++|||+.
T Consensus 253 ~~~~~~lg~~~~~~~---~~~~~~Gn~~ 277 (319)
T PRK09352 253 DATAKKLGLPMEKVV---VTVDKYGNTS 277 (319)
T ss_pred HHHHHHhCCCHHHhh---hhHHhhCCHH
Confidence 458899999999873 4578999973
No 57
>PLN02854 3-ketoacyl-CoA synthase
Probab=20.37 E-value=41 Score=34.49 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.0
Q ss_pred cchhhhccCChHHHHHHHHHHHhhcce
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNL 290 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnL 290 (305)
+.+..+||++++..++....++||||-
T Consensus 425 d~v~k~LgL~~~~~e~sr~tL~rfGNT 451 (521)
T PLN02854 425 DELQKNLQLSDWHMEPSRMTLHRFGNT 451 (521)
T ss_pred HHHHHHcCCCcccccchHHHhhhcCCh
Confidence 356789999999999999999999995
No 58
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.25 E-value=41 Score=30.26 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=20.0
Q ss_pred cchhhhccCChHHHHHHHHHHHhhccee
Q 021943 264 DDVCSKLGISKEKALSITQSVQKYGNLI 291 (305)
Q Consensus 264 ~r~~SKlgis~EK~~kI~~~vqKYGnLt 291 (305)
+.+.++||+.+||+. ..+++|||..
T Consensus 273 ~~~~~~lgl~~~k~~---~~~~~~GN~~ 297 (338)
T PRK09258 273 RAILKALGIDPEKVF---TTFPTLGNMG 297 (338)
T ss_pred HHHHHHhCCCHHHce---ehHhhhCCcH
Confidence 368889999998874 3568999974
No 59
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.24 E-value=79 Score=22.35 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=29.2
Q ss_pred cchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCc
Q 021943 229 APYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASD 264 (305)
Q Consensus 229 ~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~ 264 (305)
-|-++.-.+-++.|.++++++.-++.|++.+.+.++
T Consensus 15 lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~d~ 50 (53)
T PF05552_consen 15 LPNIVGAILILIVGWWVAKFVRKLVRRLLEKRGVDK 50 (53)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 345666677788999999999999999999888873
Done!