Query 021944
Match_columns 305
No_of_seqs 139 out of 214
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:50:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 8E-144 2E-148 988.8 11.1 251 52-304 3-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 5.2E-96 1E-100 645.5 9.9 191 28-221 12-204 (204)
3 TIGR03276 Phn-HD phosphonate d 96.9 0.0008 1.7E-08 60.7 3.4 145 90-289 4-174 (179)
4 smart00471 HDc Metal dependent 95.4 0.0089 1.9E-07 44.5 1.8 80 110-243 3-91 (124)
5 TIGR00277 HDIG uncharacterized 93.6 0.061 1.3E-06 38.8 2.6 29 209-239 49-77 (80)
6 TIGR00488 putative HD superfam 92.2 0.055 1.2E-06 46.2 0.7 37 110-146 7-47 (158)
7 PF01966 HD: HD domain; Inter 91.7 0.032 7E-07 42.4 -1.1 35 113-147 2-42 (122)
8 COG4341 Predicted HD phosphohy 91.1 0.08 1.7E-06 48.3 0.7 100 102-263 21-120 (186)
9 PRK00106 hypothetical protein; 90.4 0.51 1.1E-05 49.0 5.8 87 91-240 332-422 (535)
10 TIGR01596 cas3_HD CRISPR-assoc 88.2 0.14 3.1E-06 42.8 -0.1 34 113-146 2-47 (177)
11 PF08668 HDOD: HDOD domain; I 87.7 0.44 9.6E-06 40.9 2.6 127 80-240 47-194 (196)
12 TIGR03319 YmdA_YtgF conserved 87.3 1.2 2.5E-05 45.9 5.8 88 91-241 311-402 (514)
13 cd00077 HDc Metal dependent ph 84.9 0.25 5.5E-06 37.1 -0.2 34 207-240 54-92 (145)
14 COG2316 Predicted hydrolase (H 84.2 0.75 1.6E-05 42.5 2.4 55 86-146 28-86 (212)
15 TIGR00295 conserved hypothetic 80.9 2.6 5.7E-05 36.6 4.4 30 211-242 61-90 (164)
16 PRK12705 hypothetical protein; 78.3 3.7 8E-05 42.6 5.3 93 91-247 305-401 (508)
17 TIGR02621 cas3_GSU0051 CRISPR- 74.7 1.6 3.5E-05 47.8 1.6 37 111-147 675-717 (844)
18 COG1639 Predicted signal trans 69.6 3.3 7.1E-05 40.3 2.3 132 76-241 65-217 (289)
19 KOG0668 Casein kinase II, alph 66.1 6.2 0.00013 38.7 3.4 118 155-295 208-330 (338)
20 PRK12703 tRNA 2'-O-methylase; 63.5 6 0.00013 39.2 2.8 91 81-241 163-258 (339)
21 PRK10885 cca multifunctional t 61.5 3.4 7.4E-05 41.2 0.8 36 110-146 226-261 (409)
22 COG1505 Serine proteases of th 60.0 5.6 0.00012 42.5 2.0 137 120-273 413-573 (648)
23 COG2206 c-di-GMP phosphodieste 58.9 6.8 0.00015 37.8 2.3 50 94-147 134-191 (344)
24 PRK07152 nadD putative nicotin 57.9 4.2 9.1E-05 39.1 0.7 29 211-240 258-287 (342)
25 COG3481 Predicted HD-superfami 53.1 9.3 0.0002 37.3 2.1 50 115-165 148-199 (287)
26 PF15608 PELOTA_1: PELOTA RNA 50.3 38 0.00081 28.5 5.0 55 64-122 16-78 (100)
27 TIGR03760 ICE_TraI_Pfluor inte 47.7 8.7 0.00019 35.6 1.0 15 133-147 108-122 (218)
28 PRK12704 phosphodiesterase; Pr 46.8 17 0.00036 37.8 2.9 87 91-240 317-407 (520)
29 KOG4481 Uncharacterized conser 45.3 20 0.00044 33.2 2.9 34 83-127 112-145 (194)
30 PRK03381 PII uridylyl-transfer 43.4 11 0.00024 40.5 1.2 35 110-144 419-456 (774)
31 PRK13480 3'-5' exoribonuclease 43.3 9.5 0.00021 37.2 0.5 33 116-148 167-201 (314)
32 PF06784 UPF0240: Uncharacteri 40.5 24 0.00053 31.9 2.7 35 83-128 113-147 (179)
33 PF13328 HD_4: HD domain; PDB: 39.9 17 0.00037 30.7 1.5 48 94-142 2-49 (153)
34 PRK05092 PII uridylyl-transfer 39.8 11 0.00025 41.1 0.5 32 113-144 495-544 (931)
35 COG4820 EutJ Ethanolamine util 38.3 12 0.00027 35.9 0.5 79 117-200 187-271 (277)
36 PRK08071 L-aspartate oxidase; 38.2 46 0.00099 33.7 4.5 73 73-146 415-508 (510)
37 PTZ00100 DnaJ chaperone protei 37.2 1E+02 0.0022 26.5 5.7 53 71-130 41-97 (116)
38 PRK00275 glnD PII uridylyl-tra 36.2 15 0.00032 40.4 0.7 35 110-144 459-511 (895)
39 PRK05007 PII uridylyl-transfer 35.6 44 0.00096 36.7 4.2 35 110-144 460-512 (884)
40 COG1418 Predicted HD superfami 35.1 30 0.00065 32.0 2.4 38 111-148 36-77 (222)
41 PRK04374 PII uridylyl-transfer 34.2 23 0.00049 39.0 1.7 35 110-144 448-500 (869)
42 PRK01759 glnD PII uridylyl-tra 32.2 19 0.00042 39.2 0.8 35 110-144 435-487 (854)
43 KOG2155 Tubulin-tyrosine ligas 31.9 26 0.00056 36.9 1.6 18 120-137 373-390 (631)
44 PRK00227 glnD PII uridylyl-tra 31.2 52 0.0011 35.6 3.8 37 110-146 379-418 (693)
45 TIGR02692 tRNA_CCA_actino tRNA 30.3 31 0.00068 34.7 1.9 38 110-147 257-296 (466)
46 PRK03059 PII uridylyl-transfer 29.9 27 0.00058 38.3 1.4 34 111-144 440-491 (856)
47 PF00307 CH: Calponin homology 29.4 90 0.0019 23.8 3.9 44 259-304 2-48 (108)
48 PF07514 TraI_2: Putative heli 29.0 18 0.00039 35.3 -0.1 36 112-147 67-121 (327)
49 PF12477 TraW_N: Sex factor F 28.7 20 0.00043 24.3 0.1 12 156-167 20-31 (31)
50 TIGR03401 cyanamide_fam HD dom 27.9 31 0.00068 32.1 1.3 38 108-145 55-97 (228)
51 PF05964 FYRN: F/Y-rich N-term 27.5 28 0.0006 25.5 0.7 26 138-168 5-30 (54)
52 COG3437 Response regulator con 27.5 74 0.0016 32.2 3.9 111 90-249 168-291 (360)
53 TIGR02578 cas_TM1811_Csm1 CRIS 26.8 21 0.00046 37.9 0.0 14 134-147 2-15 (648)
54 PRK13298 tRNA CCA-pyrophosphor 25.9 43 0.00092 34.2 1.9 35 111-146 228-262 (417)
55 COG0647 NagD Predicted sugar p 24.4 2E+02 0.0044 27.6 6.0 112 69-203 32-171 (269)
56 TIGR01693 UTase_glnD [Protein- 24.3 20 0.00042 38.8 -0.8 16 129-144 464-479 (850)
57 PRK14064 exodeoxyribonuclease 23.8 1.4E+02 0.003 23.6 4.1 42 85-126 3-45 (75)
58 PF03656 Pam16: Pam16; InterP 22.3 31 0.00067 29.9 0.2 32 86-119 53-85 (127)
59 PF04986 Y2_Tnp: Putative tran 21.3 25 0.00055 31.2 -0.6 33 207-243 145-177 (183)
60 TIGR00691 spoT_relA (p)ppGpp s 20.8 75 0.0016 34.1 2.6 34 108-142 16-49 (683)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=7.5e-144 Score=988.81 Aligned_cols=251 Identities=66% Similarity=1.141 Sum_probs=201.5
Q ss_pred hhhHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCC
Q 021944 52 ERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDED 131 (305)
Q Consensus 52 ~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pd 131 (305)
+|++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+||
T Consensus 3 ~~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~d 82 (253)
T PF05153_consen 3 EACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPD 82 (253)
T ss_dssp --HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-H
T ss_pred cHhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcc
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 021944 132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 211 (305)
Q Consensus 132 W~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSW 211 (305)
|||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+|||
T Consensus 83 W~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msW 160 (253)
T PF05153_consen 83 WMQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSW 160 (253)
T ss_dssp HHHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-S
T ss_pred hhhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecC
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCceeeecCCCCCChhhhhhhhH
Q 021944 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYL 291 (305)
Q Consensus 212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~ 291 (305)
|||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||+
T Consensus 161 gHDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~ 240 (253)
T PF05153_consen 161 GHDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQ 240 (253)
T ss_dssp SHHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHH
T ss_pred CchHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccC
Q 021944 292 SLIEKVNVNKFLF 304 (305)
Q Consensus 292 ~LidKY~P~~l~~ 304 (305)
+|||||||++|+|
T Consensus 241 ~LidKy~P~~l~W 253 (253)
T PF05153_consen 241 SLIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHHS-S-EEE
T ss_pred HHHHHHCCCcCCC
Confidence 9999999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=5.2e-96 Score=645.54 Aligned_cols=191 Identities=73% Similarity=1.293 Sum_probs=184.6
Q ss_pred ecCCCCCCCCccccccCCCccc-cchhhHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCC
Q 021944 28 LDGGFLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDP 106 (305)
Q Consensus 28 ~dg~f~~p~~~~~~~~fR~Y~~-~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDP 106 (305)
.|--|..|++++++.+||+|++ ++++++||+.|||.||+|||||||++||++|+||++.+||||||||+||++||||||
T Consensus 12 v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDP 91 (204)
T KOG1573|consen 12 VDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDP 91 (204)
T ss_pred ccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCC
Confidence 3445899999999999999965 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCCCcceehhheecccccccccCCCCCCCceeecCceeeecccCCCcccc-cccccCCC
Q 021944 107 DLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHH-KYFKENPD 185 (305)
Q Consensus 107 D~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~-e~F~~NPD 185 (305)
|+|+|||+|||||||+||++||+.||||||||||||||||. |||+||||||||||||||+|++||||. ++|..|||
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD 168 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPD 168 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCC
Confidence 99999999999999999999999999999999999999995 589999999999999999999999996 99999999
Q ss_pred CCCCCCCCCCCcccCCCCccccccccCchhhHHHHH
Q 021944 186 YSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVA 221 (305)
Q Consensus 186 ~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vl 221 (305)
.+||+|||+.|||+|+||||||+||||||||||+|+
T Consensus 169 ~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 169 INNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred CCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=96.89 E-value=0.0008 Score=60.66 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=91.5
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecccccccccCCCCCCCceeecCceeeecc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCA 169 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~ 169 (305)
|-+-..++.......----..+|++|+||||...+++ |-.+=+.+.+|+||+|.++.- . |++
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~-Gad~elvvAALLHDIGhll~~--~---------~~~------ 65 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAA-GADDELIVAAFLHDIGHLLAD--E---------GAT------ 65 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhcchhhhc--c---------ccc------
Confidence 3334444444444332235699999999999999998 766666999999999998732 1 111
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc----ccccc
Q 021944 170 FDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS----FYALH 245 (305)
Q Consensus 170 f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS----FYpwH 245 (305)
.+..|+ .+.|++.==..|+. .+|++...+||.|. ++---
T Consensus 66 ----------------------~~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv~aKryl~a~ 108 (179)
T TIGR03276 66 ----------------------PMGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHVQAKRYLCAV 108 (179)
T ss_pred ----------------------ccccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHcc
Confidence 111122 23588888888886 39999999999986 22111
Q ss_pred cccccccc--------------CChhhHHHHH------HHHHcCCceeeecCCC--CCChhhhhhh
Q 021944 246 KSEAYKHL--------------MNEEDVENLK------WLETFSKYDLYSKSKV--RIDVEKVKPY 289 (305)
Q Consensus 246 ~~gaY~hL--------------~n~~D~~~l~------wV~~Fn~yDLYSKs~~--~pdve~lkPY 289 (305)
..+-|.+| |+++..+.++ -.-.|-+||==+|.+. .|+++..+|.
T Consensus 109 ~p~Y~~~LS~aS~~sL~~QGG~~~~~e~~~f~~~p~~~dav~lR~wDd~ak~~~~~~~~l~~~~~~ 174 (179)
T TIGR03276 109 DPAYAESLSPASRRSLELQGGPFTAAEADAFERDPHAADAIRLRRWDDLAKDPGVPTPDLDHFMPL 174 (179)
T ss_pred ChHHHHHcCHHHHhHHHHcCCCCCHHHHHHHHhCccHHHHHHHHHcchhccCCCCCCCCHHHHHHH
Confidence 12233456 6666554332 2223688888888877 4666654443
No 4
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.40 E-value=0.0089 Score=44.52 Aligned_cols=80 Identities=25% Similarity=0.118 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHHhh---CC--CCCcceehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCC
Q 021944 110 EPQIEHLLQTAEAIRKD---YP--DEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENP 184 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p--~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NP 184 (305)
.+.++|.+++|..++.- .+ +.+.+-++||+||+||......+....+
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~~---------------------------- 54 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTS---------------------------- 54 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCcc----------------------------
Confidence 45678888887776533 11 4477889999999999884311100000
Q ss_pred CCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHH----hHhccccc
Q 021944 185 DYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFI----IRYHSFYA 243 (305)
Q Consensus 185 D~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~m----IRyHSFYp 243 (305)
.-.+|...-..+++. ..+|++...+ |++|.+-.
T Consensus 55 ------------------------~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~i~~h~~~~ 91 (124)
T smart00471 55 ------------------------VLEDHHFIGAEILLE--EEEPRILEEILATAILSHHERP 91 (124)
T ss_pred ------------------------HHHHhHHHHHHHHHh--CCCCHHHHHHHhhHHHHhcccc
Confidence 335788888888876 4678777766 99987643
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=93.62 E-value=0.061 Score=38.79 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=23.6
Q ss_pred cccCchhhHHHHHHhCCCCCChhhHHHhHhc
Q 021944 209 MSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239 (305)
Q Consensus 209 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 239 (305)
...+|.+.=..+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345788887888875 47999999999998
No 6
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=92.15 E-value=0.055 Score=46.20 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHh----hCCCCCcceehhheecccccc
Q 021944 110 EPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKll 146 (305)
..-.+|.+.+|...|+ -.++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3557899988876543 226788999999999999953
No 7
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=91.68 E-value=0.032 Score=42.40 Aligned_cols=35 Identities=34% Similarity=0.610 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHH---hhCC---CCCcceehhheeccccccc
Q 021944 113 IEHLLQTAEAIR---KDYP---DEDWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 113 i~H~lQTAEaiR---~d~p---~pdW~qLtGliHDLGKll~ 147 (305)
++|.+.+|+.++ +..+ +.+++.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 467776665544 3334 6688999999999999983
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=91.12 E-value=0.08 Score=48.25 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=69.7
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccc
Q 021944 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFK 181 (305)
Q Consensus 102 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~ 181 (305)
|++=----++|.+|+||+|-..-+| |-++=+.-..|+||+|-+..= +| +|..
T Consensus 21 ~e~y~ge~VTq~eHaLQ~AtlAerd-Ga~~~lVaaALLHDiGhl~~~--~g---------~~ps---------------- 72 (186)
T COG4341 21 DEGYSGEPVTQLEHALQCATLAERD-GADTALVAAALLHDIGHLYAD--YG---------HTPS---------------- 72 (186)
T ss_pred ccccccCcchhhhhHHHHhHHHHhc-CCcHHHHHHHHHHhHHHHhhh--cC---------CCcc----------------
Confidence 3333334578999999999999999 888777788999999999832 32 2211
Q ss_pred cCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHH
Q 021944 182 ENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVEN 261 (305)
Q Consensus 182 ~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~ 261 (305)
.-|+|.- =|+|.==-||.. -.|+-.-.-||.|- |+=++||+ -|.+-
T Consensus 73 -------------------~~~i~d~----~hee~~~~vL~~---~f~~~v~e~vrlHv-------~akR~lca-~~p~Y 118 (186)
T COG4341 73 -------------------AAGIDDP----FHEEFATPVLRK---LFPPFVREPVRLHV-------GAKRYLCA-VDPAY 118 (186)
T ss_pred -------------------ccccchh----HHHHHhHHHHHH---hCcHHHHHHHHHHH-------hhhhhhhc-cChHH
Confidence 1233333 367777778865 47888888899885 67788887 55554
Q ss_pred HH
Q 021944 262 LK 263 (305)
Q Consensus 262 l~ 263 (305)
..
T Consensus 119 f~ 120 (186)
T COG4341 119 FD 120 (186)
T ss_pred Hh
Confidence 43
No 9
>PRK00106 hypothetical protein; Provisional
Probab=90.43 E-value=0.51 Score=49.04 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hC-CCCCcceehhheecccccccccCCCCCCCceeecCceee
Q 021944 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (305)
Q Consensus 91 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~-p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpV 166 (305)
.|++.+|-.|-.-.+-+.. ...|.+.+|...+. .+ .++++.-++||+||+||++. .
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~-----~------------- 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAID-----R------------- 391 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccC-----c-------------
Confidence 5788888877544433332 47999999887542 22 46789999999999999851 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc
Q 021944 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 240 (305)
+ . ..+|.+.=+.+++.. .+|++-+.+|++|-
T Consensus 392 -----------e----------------------~--------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH 422 (535)
T PRK00106 392 -----------E----------------------V--------EGSHVEIGMEFARKY--KEHPVVVNTIASHH 422 (535)
T ss_pred -----------c----------------------c--------cCChHHHHHHHHHHc--CCCHHHHHHHHHhC
Confidence 0 0 115889999999865 48999999999985
No 10
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=88.18 E-value=0.14 Score=42.77 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHh----------hCC--CCCcceehhheecccccc
Q 021944 113 IEHLLQTAEAIRK----------DYP--DEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 113 i~H~lQTAEaiR~----------d~p--~pdW~qLtGliHDLGKll 146 (305)
.+|++.||+..+. ..| .++++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 223 358999999999999976
No 11
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=87.70 E-value=0.44 Score=40.91 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=72.5
Q ss_pred hcCCCCccccHHHHHHHH--------------hhhhcCCC-CCCCc-hHHHHHHHHHHHHHhh-----CCCCCcceehhh
Q 021944 80 YGKLNRVEMSIWECCELL--------------NDVVDESD-PDLDE-PQIEHLLQTAEAIRKD-----YPDEDWLHLTGL 138 (305)
Q Consensus 80 ~~~~~~~~MsI~EA~e~L--------------n~lvDeSD-PD~dl-~qi~H~lQTAEaiR~d-----~p~pdW~qLtGl 138 (305)
+.++.+.--||.+|+-.| ...+..+. ....+ .-..|.+.+|..+++- ..+||-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556667999999877 12222222 11222 3348999988887632 234588899999
Q ss_pred eecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHH
Q 021944 139 IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMY 218 (305)
Q Consensus 139 iHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY 218 (305)
+||+|+++++..+ |++ |--++. ..+.++- +. =-.++-.+.+.|.|==.
T Consensus 127 L~~iG~l~l~~~~---~~~------~~~~~~---------~~~~~~~---~~-----------~~~e~~~~g~~h~~lg~ 174 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEY------YEEILQ---------EVKQEPE---SR-----------EEAERELFGVTHAELGA 174 (196)
T ss_dssp HTTHHHHHHHHHC---HHH------HHHHHH---------HHHHHCT---HH-----------HHHHHHHHSSHHHHHHH
T ss_pred HHHHhHHHHHHHh---HHH------HHHHHH---------HHHcCCC---CH-----------HHHHHHHHcCCHHHHHH
Confidence 9999999975222 111 110000 0000000 00 12344566667888888
Q ss_pred HHHHhCCCCCChhhHHHhHhcc
Q 021944 219 LVAKENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 219 ~Vlk~n~stLP~eaL~mIRyHS 240 (305)
.+++.- .||++-...||+|-
T Consensus 175 ~l~~~W--~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 175 ALLRKW--GLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHHT--T--HHHHHHHHHTT
T ss_pred HHHHHc--CCCHHHHHHHHHHh
Confidence 888864 89999999999984
No 12
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.30 E-value=1.2 Score=45.90 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh----hCCCCCcceehhheecccccccccCCCCCCCceeecCceee
Q 021944 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (305)
Q Consensus 91 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpV 166 (305)
.+++.+|..|---+....+ ...|.+.+|...+. --.+++...+.||+||+||++. +
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~---------~--------- 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVD---------H--------- 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccc---------h---------
Confidence 4677777775333222222 46799888776442 2246678889999999999740 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 021944 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (305)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (305)
+ + -.+|.++=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02688888889976 4689999999999984
No 13
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=84.87 E-value=0.25 Score=37.14 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=23.0
Q ss_pred cccccCchhhHHHHHHh----CCCCCChhhHHHhH-hcc
Q 021944 207 VMMSWGHDDYMYLVAKE----NKTTLPSAALFIIR-YHS 240 (305)
Q Consensus 207 V~mSWGHDEYlY~Vlk~----n~stLP~eaL~mIR-yHS 240 (305)
....++|..+=+.+++. ....++.+....+. +|.
T Consensus 54 ~~~~~~h~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (145)
T cd00077 54 SELEKDHAIVGAEILRELLLEEVIKLIDELILAVDASHH 92 (145)
T ss_pred HHHHHhhHHHHHHHHHHhhhcccccccHHHHHHHHHHcc
Confidence 44678899999999864 45566766655555 443
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=84.18 E-value=0.75 Score=42.50 Aligned_cols=55 Identities=31% Similarity=0.432 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCcceehhheecccccc
Q 021944 86 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 86 ~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 146 (305)
+.||-.||+++|.+.|-+ .+.+.|++.++..+|. .+| |..=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 568889999999998854 5679999999998883 333 222235789999875433
No 15
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=80.87 E-value=2.6 Score=36.65 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=24.6
Q ss_pred cCchhhHHHHHHhCCCCCChhhHHHhHhcccc
Q 021944 211 WGHDDYMYLVAKENKTTLPSAALFIIRYHSFY 242 (305)
Q Consensus 211 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFY 242 (305)
+.|.+.=|.+|+. ..+|++.+.+|+.|.+.
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~~ 90 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFGA 90 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhCC
Confidence 3799999999986 47899999999987543
No 16
>PRK12705 hypothetical protein; Provisional
Probab=78.28 E-value=3.7 Score=42.62 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=60.2
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh----CCCCCcceehhheecccccccccCCCCCCCceeecCceee
Q 021944 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD----YPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (305)
Q Consensus 91 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d----~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpV 166 (305)
.+++..|-.|---+.+..+ .+.|.+.+|..++.- .-+++-...+||+||+||+.- +.
T Consensus 305 ~~li~~Lg~L~~R~sygqn--vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e-------- 365 (508)
T PRK12705 305 PGLVRLLGRLYFRTSYGQN--VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE-------- 365 (508)
T ss_pred HHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh--------
Confidence 3455555544222222222 579999988866522 134566678999999999630 00
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccc
Q 021944 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHK 246 (305)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~ 246 (305)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||..
T Consensus 366 ------------------------------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~~ 400 (508)
T PRK12705 366 ------------------------------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVNP 400 (508)
T ss_pred ------------------------------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCCC
Confidence 0127888889999864 699999999999983 5543
Q ss_pred c
Q 021944 247 S 247 (305)
Q Consensus 247 ~ 247 (305)
.
T Consensus 401 ~ 401 (508)
T PRK12705 401 E 401 (508)
T ss_pred C
Confidence 3
No 17
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=74.69 E-value=1.6 Score=47.78 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHH---hhCCCCCc---ceehhheeccccccc
Q 021944 111 PQIEHLLQTAEAIR---KDYPDEDW---LHLTGLIHDLGKVLN 147 (305)
Q Consensus 111 ~qi~H~lQTAEaiR---~d~p~pdW---~qLtGliHDLGKll~ 147 (305)
+.-+|+..+|+..+ +.+|-++| ..+.|+.|||||.-.
T Consensus 675 ~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~~ 717 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQRP 717 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCCH
Confidence 34589998888776 55788888 579999999999763
No 18
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=69.63 E-value=3.3 Score=40.31 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=78.5
Q ss_pred HHHHhcCCCCccccHHHHHHHH-----hhhhc-------CCCCCCCchHH----HHHHHHHHHHH---hhC--CCCCcce
Q 021944 76 MREEYGKLNRVEMSIWECCELL-----NDVVD-------ESDPDLDEPQI----EHLLQTAEAIR---KDY--PDEDWLH 134 (305)
Q Consensus 76 ~~~~~~~~~~~~MsI~EA~e~L-----n~lvD-------eSDPD~dl~qi----~H~lQTAEaiR---~d~--p~pdW~q 134 (305)
+-.-|..+.+.--||-||+..| -+||= -+.|+..--+. .+++.||-.++ ++. ++++=.-
T Consensus 65 ANS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y 144 (289)
T COG1639 65 ANSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAY 144 (289)
T ss_pred hcchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 3345778888889999998866 12221 12232222222 45555554443 333 4567778
Q ss_pred ehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCch
Q 021944 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHD 214 (305)
Q Consensus 135 LtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHD 214 (305)
++||+|.+|+|+++..| |+|.-+ +|. .-..|+|.... +|-.+--.+|-
T Consensus 145 ~~gLLh~lG~l~ll~~~---~~~~~~------~~~---------~~~~~~~~~~~--------------~~e~~~i~~h~ 192 (289)
T COG1639 145 TAGLLHNLGILVLLTDF---PDHCEL------LDY---------LLALNNDELLA--------------LDEELGIFGHA 192 (289)
T ss_pred HHHHHHHccHHHHHHHh---HHHHHH------HHH---------HHHhccCcccc--------------hHHHhccccch
Confidence 89999999999988444 445332 222 22234443211 12222223478
Q ss_pred hhHHHHHHhCCCCCChhhHHHhHhccc
Q 021944 215 DYMYLVAKENKTTLPSAALFIIRYHSF 241 (305)
Q Consensus 215 EYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (305)
+--+.+++.- .+|++-...||+|-=
T Consensus 193 ~Iga~llr~W--~fp~~l~e~i~~~~~ 217 (289)
T COG1639 193 SIGAYLLRRW--NFPDDLIEAIRFHHN 217 (289)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHhhc
Confidence 8888888875 789999999999864
No 19
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=66.09 E-value=6.2 Score=38.70 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=75.6
Q ss_pred CCceeecCceeeecccCCCccc-cc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhh
Q 021944 155 PQWAVVGDTFPVGCAFDESIVH-HK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAA 232 (305)
Q Consensus 155 pQW~vvGDTfpVGC~f~~~iv~-~e-~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~ea 232 (305)
++.+-.=|.|++||-+.+ +|| .| ||.+ -|..+. =.-+.+| -|-|| ||.-+...+..||++-
T Consensus 208 ~~YDYSLD~WS~GcmlA~-miFrkepFFhG-~dN~DQ-----------LVkIakV---LGt~e-l~~Yl~KY~i~Ldp~~ 270 (338)
T KOG0668|consen 208 QMYDYSLDMWSLGCMLAS-MIFRKEPFFHG-HDNYDQ-----------LVKIAKV---LGTDE-LYAYLNKYQIDLDPQF 270 (338)
T ss_pred hhccccHHHHHHHHHHHH-HHhccCcccCC-CCCHHH-----------HHHHHHH---hChHH-HHHHHHHHccCCChhH
Confidence 455556688899998875 445 33 4432 111111 0111223 36666 5555556788999999
Q ss_pred HHHhHhcccccccc--cccccccCChhhHHHHHHHHHcCCceeeecCCCCCChhhhh-hhhHHHHH
Q 021944 233 LFIIRYHSFYALHK--SEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVK-PYYLSLIE 295 (305)
Q Consensus 233 L~mIRyHSFYpwH~--~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lk-PYY~~Lid 295 (305)
=.+++-||=.||++ +..=+||.+++-.+.|.=+..+. -.+.+.--|++. |||....+
T Consensus 271 ~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD------HqeRlTakEam~HpyF~~~~~ 330 (338)
T KOG0668|consen 271 EDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD------HQERLTAKEAMAHPYFAPVRE 330 (338)
T ss_pred hhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc------cccccchHHHhcCchHHHHHH
Confidence 99999999999998 56679999998888887766544 222233344444 88877654
No 20
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=63.47 E-value=6 Score=39.20 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=62.9
Q ss_pred cCCCCccccHHHHHHHHhhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCC-CCCcceehhheecccccccccCCCCCC
Q 021944 81 GKLNRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIR---KDYP-DEDWLHLTGLIHDLGKVLNLPSFGGLP 155 (305)
Q Consensus 81 ~~~~~~~MsI~EA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p-~pdW~qLtGliHDLGKll~l~~f~~ep 155 (305)
+|.....++.-||+++|... .++ ..+.|.++.|...+ +.++ +.+=+.+.||+||+||....
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~e-------~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~------- 228 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGASD-------LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTN------- 228 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccccc-------
Confidence 34445668999999999987 322 24888887654433 3222 44555568999999996410
Q ss_pred CceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHH
Q 021944 156 QWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFI 235 (305)
Q Consensus 156 QW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~m 235 (305)
. ..|...=+++|+. ..+|++-+.+
T Consensus 229 -----------------------------~-------------------------~~H~~~Ga~iL~e--~G~~e~i~~i 252 (339)
T PRK12703 229 -----------------------------G-------------------------IDHAVAGAEILRK--ENIDDRVVSI 252 (339)
T ss_pred -----------------------------C-------------------------CCHHHHHHHHHHH--CCCCHHHHHH
Confidence 0 1577777889985 4778999999
Q ss_pred hHhccc
Q 021944 236 IRYHSF 241 (305)
Q Consensus 236 IRyHSF 241 (305)
|+.|.-
T Consensus 253 Ie~H~g 258 (339)
T PRK12703 253 VERHIG 258 (339)
T ss_pred HHHHhc
Confidence 999884
No 21
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=61.49 E-value=3.4 Score=41.20 Aligned_cols=36 Identities=28% Similarity=0.192 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHhhCCCCCcceehhheecccccc
Q 021944 110 EPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 146 (305)
.+..+|.+.+-+.+.+- +...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l-~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKL-SPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhc-CCCHHHHHHHHhccccCCC
Confidence 35578988888777654 4445688999999999965
No 22
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=60.00 E-value=5.6 Score=42.54 Aligned_cols=137 Identities=19% Similarity=0.300 Sum_probs=83.2
Q ss_pred HHHHHhhCCCCCcceehh-heecccccccccCCC-CCCCceeecCceeeec----------------ccCCCcccccccc
Q 021944 120 AEAIRKDYPDEDWLHLTG-LIHDLGKVLNLPSFG-GLPQWAVVGDTFPVGC----------------AFDESIVHHKYFK 181 (305)
Q Consensus 120 AEaiR~d~p~pdW~qLtG-liHDLGKll~l~~f~-~epQW~vvGDTfpVGC----------------~f~~~iv~~e~F~ 181 (305)
...+.+| +.|-|+.--| | .|-+.|.|- ..--|.=-|-+|++.| +.....||.+||+
T Consensus 413 ~K~~~~d-~~pTll~aYGGF-----~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~A 486 (648)
T COG1505 413 RKGAKKD-ENPTLLYAYGGF-----NISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIA 486 (648)
T ss_pred ecCCcCC-CCceEEEecccc-----ccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHH
Confidence 3445566 6776665444 1 122345542 2234777788888765 3467889999998
Q ss_pred cCCCCCCCCCCC--CCCcccC-CCCcc-ccccccCchhhHHHHHHhCCCCCChhhHHHhHhccccccccccc--ccccCC
Q 021944 182 ENPDYSNPAFNT--EYGVYSE-GCGLD-NVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEA--YKHLMN 255 (305)
Q Consensus 182 ~NPD~~~p~YnT--~~GiY~p-~CGLd-nV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~ga--Y~hL~n 255 (305)
---|-.-..|.| +.||.-. |-||= -|.|. .+.|=+=-++-. -.-|.|||||-|++ |+ =.+-=|
T Consensus 487 VaedLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPelfgA~v~e------vPllDMlRYh~l~a----G~sW~~EYG~ 555 (648)
T COG1505 487 VAEDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPELFGAAVCE------VPLLDMLRYHLLTA----GSSWIAEYGN 555 (648)
T ss_pred HHHHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChhhhCceeec------cchhhhhhhccccc----chhhHhhcCC
Confidence 877777677766 5677753 44442 22222 334432222211 13589999999985 22 133447
Q ss_pred hhhHHHHHHHHHcCCcee
Q 021944 256 EEDVENLKWLETFSKYDL 273 (305)
Q Consensus 256 ~~D~~~l~wV~~Fn~yDL 273 (305)
++|.+.++|+.++.||-=
T Consensus 556 Pd~P~d~~~l~~YSPy~n 573 (648)
T COG1505 556 PDDPEDRAFLLAYSPYHN 573 (648)
T ss_pred CCCHHHHHHHHhcCchhc
Confidence 888999999999999843
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=58.95 E-value=6.8 Score=37.83 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHhhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCCCC----Ccceehhheeccccccc
Q 021944 94 CELLNDV-VDESDPDLDEPQIEHLLQTAEAIR---KDYPDE----DWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 94 ~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p~p----dW~qLtGliHDLGKll~ 147 (305)
...+... ++..|+.| -.|-..+|+-.+ +.-|-+ .++-+.|++||+||+-.
T Consensus 134 ~~~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 134 LVALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 3334444 77777776 678888776544 333433 35678999999999984
No 24
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=57.93 E-value=4.2 Score=39.10 Aligned_cols=29 Identities=24% Similarity=0.063 Sum_probs=23.8
Q ss_pred cCchhhHHHHHHhCCCCCC-hhhHHHhHhcc
Q 021944 211 WGHDDYMYLVAKENKTTLP-SAALFIIRYHS 240 (305)
Q Consensus 211 WGHDEYlY~Vlk~n~stLP-~eaL~mIRyHS 240 (305)
..|.+.=+.++++. ..+| ++.+..||+|-
T Consensus 258 ~~H~~~Ga~ll~~~-~~~p~~~i~~aI~~Hh 287 (342)
T PRK07152 258 VLHQYVGALWLKHV-YGIDDEEILNAIRNHT 287 (342)
T ss_pred HHhHHHHHHHHHHH-cCCCcHHHHHHHHhcc
Confidence 36999999999862 3677 78999999987
No 25
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=53.11 E-value=9.3 Score=37.26 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhCCCC--CcceehhheecccccccccCCCCCCCceeecCcee
Q 021944 115 HLLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFP 165 (305)
Q Consensus 115 H~lQTAEaiR~d~p~p--dW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfp 165 (305)
=+++.|.++-+-||-- |=++..+.+||+||++-+-.. ....|.|-|+-.+
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~-~~~~yt~~g~lig 199 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGP-EATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCc-ccccceeccceeE
Confidence 3566677776656543 677889999999999976333 3457777776543
No 26
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=50.33 E-value=38 Score=28.52 Aligned_cols=55 Identities=31% Similarity=0.476 Sum_probs=44.0
Q ss_pred hhhhchHHHHHHHHHHhcC--CCCccccHHHHHHHHhh------hhcCCCCCCCchHHHHHHHHHHH
Q 021944 64 NHINQTYDFVKKMREEYGK--LNRVEMSIWECCELLND------VVDESDPDLDEPQIEHLLQTAEA 122 (305)
Q Consensus 64 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln~------lvDeSDPD~dl~qi~H~lQTAEa 122 (305)
..+.|+.++|.+..++|+- .|+.+-+|-||-..|-. ||++. +-|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3467889999999999974 66899999999999853 56542 23778999999985
No 27
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=47.67 E-value=8.7 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.0
Q ss_pred ceehhheeccccccc
Q 021944 133 LHLTGLIHDLGKVLN 147 (305)
Q Consensus 133 ~qLtGliHDLGKll~ 147 (305)
+-..||+|||||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 445679999999974
No 28
>PRK12704 phosphodiesterase; Provisional
Probab=46.79 E-value=17 Score=37.75 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHH---hhC-CCCCcceehhheecccccccccCCCCCCCceeecCceee
Q 021944 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR---KDY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (305)
Q Consensus 91 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR---~d~-p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpV 166 (305)
.+++.+|..| .-.|+.+. ....|.+-+|-..+ +.. .+++-.-+.||+||+||+.. .
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~~-----~------------- 376 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALD-----H------------- 376 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCcc-----c-------------
Confidence 3566777666 33444432 24578877665543 222 34566779999999999841 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc
Q 021944 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 240 (305)
+ + ...|...=+.+++. ..+|+....+|++|.
T Consensus 377 -----------e------------~------------------~~~H~~iGa~il~~--~~~~~~v~~aI~~HH 407 (520)
T PRK12704 377 -----------E------------V------------------EGSHVEIGAELAKK--YKESPVVINAIAAHH 407 (520)
T ss_pred -----------c------------c------------------cCCHHHHHHHHHHH--cCCCHHHHHHHHHcC
Confidence 0 0 01477777778875 468999999999998
No 29
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.32 E-value=20 Score=33.24 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred CCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC
Q 021944 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (305)
Q Consensus 83 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~ 127 (305)
..+++.||-||+++||. -.-+|.+ ||||-|-..|
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 34688999999999998 5555766 7899998874
No 30
>PRK03381 PII uridylyl-transferase; Provisional
Probab=43.40 E-value=11 Score=40.52 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHH---HhhCCCCCcceehhheecccc
Q 021944 110 EPQIEHLLQTAEAI---RKDYPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 110 l~qi~H~lQTAEai---R~d~p~pdW~qLtGliHDLGK 144 (305)
.+.-+|.+.|-+.+ ...-..|+.+-|++|+||+||
T Consensus 419 ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 419 WTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 35557888875544 333356789999999999999
No 31
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=43.33 E-value=9.5 Score=37.19 Aligned_cols=33 Identities=42% Similarity=0.640 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCC--Ccceehhheecccccccc
Q 021944 116 LLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNL 148 (305)
Q Consensus 116 ~lQTAEaiR~d~p~p--dW~qLtGliHDLGKll~l 148 (305)
++++|.++-..||.- |=+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 344455554556643 444445599999999966
No 32
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=40.51 E-value=24 Score=31.90 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=28.1
Q ss_pred CCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCC
Q 021944 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYP 128 (305)
Q Consensus 83 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p 128 (305)
..++++||.||+++|+..- .||.+ .|||+|-++|.
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY~ 147 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEYK 147 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHhC
Confidence 4579999999999999754 55665 46999999974
No 33
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=39.87 E-value=17 Score=30.69 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecc
Q 021944 94 CELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (305)
Q Consensus 94 ~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (305)
+++.-+.....-.++..|-|.|++++|+.+..- +-..=...+||+||.
T Consensus 2 ~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~-~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 2 LAFAAEAHAGQRRKSGEPYISHPLEVAEILAEL-GLDEETIAAALLHDV 49 (153)
T ss_dssp HHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred HHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHhhheeecH
Confidence 333334333334456688999999999999544 433235678899984
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=39.78 E-value=11 Score=41.14 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhh------------------CCCCCcceehhheecccc
Q 021944 113 IEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 113 i~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 144 (305)
-+|.++|-+.+++- -++|+.+-|++|+||+||
T Consensus 495 d~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 495 DEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 36888887766531 155788999999999999
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=38.35 E-value=12 Score=35.88 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=57.1
Q ss_pred HHHHHHHHhhC--CCCCcceehhheeccccccc--ccCCCCCCCceeecCceeeecccCCC-cccccccccCCCC-CCCC
Q 021944 117 LQTAEAIRKDY--PDEDWLHLTGLIHDLGKVLN--LPSFGGLPQWAVVGDTFPVGCAFDES-IVHHKYFKENPDY-SNPA 190 (305)
Q Consensus 117 lQTAEaiR~d~--p~pdW~qLtGliHDLGKll~--l~~f~~epQW~vvGDTfpVGC~f~~~-iv~~e~F~~NPD~-~~p~ 190 (305)
|.+||.+++++ +..-|-+..-..--+-.|.. +...+..+-|-|.|. |.++-. -+|.+.|+.|--- ++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-----c~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-----CMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-----ccCccHHHHHHHHhccccccCCCcc
Confidence 78999999998 67789888877666655553 444556667776663 666643 4577777777554 7899
Q ss_pred CCCCCCcccC
Q 021944 191 FNTEYGVYSE 200 (305)
Q Consensus 191 YnT~~GiY~p 200 (305)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999644
No 36
>PRK08071 L-aspartate oxidase; Provisional
Probab=38.22 E-value=46 Score=33.74 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhh-cCC--CCC---CCchHHHHHHHHHHHH---------------HhhCCCCC
Q 021944 73 VKKMREEYGKLNRVEMSIWECCELLNDVV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPDED 131 (305)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lv-DeS--DPD---~dl~qi~H~lQTAEai---------------R~d~p~pd 131 (305)
.++...+|...-|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566778777888889999999999884 211 111 1223457888999886 44588778
Q ss_pred cceehhheecccccc
Q 021944 132 WLHLTGLIHDLGKVL 146 (305)
Q Consensus 132 W~qLtGliHDLGKll 146 (305)
|...+ ++-.-||+.
T Consensus 495 ~~~~~-~~~~~~~~~ 508 (510)
T PRK08071 495 WRGKE-IVRTKRKLQ 508 (510)
T ss_pred cCceE-EEecCCcee
Confidence 86555 555555553
No 37
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=37.24 E-value=1e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcC--CC--CccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCC
Q 021944 71 DFVKKMREEYGK--LN--RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDE 130 (305)
Q Consensus 71 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~p 130 (305)
.|+..+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||.
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPDk 97 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPDN 97 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Confidence 456777777744 33 468999999999983 34555666655544 3445556763
No 38
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=36.19 E-value=15 Score=40.40 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCcceehhheecccc
Q 021944 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 144 (305)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGK 511 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGK 511 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 45557999887777541 125678999999999999
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=35.65 E-value=44 Score=36.69 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCcceehhheecccc
Q 021944 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (305)
.+.-+|.+.+-+.+++ +.++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 4555888888776652 1247789999999999999
No 40
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=35.07 E-value=30 Score=31.95 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=26.2
Q ss_pred hHHHHHHHHH---HHHHhhC-CCCCcceehhheecccccccc
Q 021944 111 PQIEHLLQTA---EAIRKDY-PDEDWLHLTGLIHDLGKVLNL 148 (305)
Q Consensus 111 ~qi~H~lQTA---EaiR~d~-p~pdW~qLtGliHDLGKll~l 148 (305)
..+.|.+.+| ..|-+.. .|++=....||+||+||..-.
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 3456666554 4455443 466777889999999999843
No 41
>PRK04374 PII uridylyl-transferase; Provisional
Probab=34.16 E-value=23 Score=38.97 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCcceehhheecccc
Q 021944 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (305)
.+.-+|.+.+-+.+++ ....|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 4556788887666542 1135789999999999999
No 42
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=32.23 E-value=19 Score=39.21 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCcceehhheecccc
Q 021944 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (305)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4566798888776532 1256788899999999999
No 43
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.89 E-value=26 Score=36.93 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCcceehh
Q 021944 120 AEAIRKDYPDEDWLHLTG 137 (305)
Q Consensus 120 AEaiR~d~p~pdW~qLtG 137 (305)
|+-+|+++|.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999984
No 44
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=31.24 E-value=52 Score=35.56 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHhh---CCCCCcceehhheecccccc
Q 021944 110 EPQIEHLLQTAEAIRKD---YPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p~pdW~qLtGliHDLGKll 146 (305)
.+.-+|.++|.+.+.+. ...|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 35567999998866432 25667788999999999954
No 45
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=30.28 E-value=31 Score=34.74 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC-cceehhheeccccccc
Q 021944 110 EPQIEHLLQTAEAIRKDYP-DED-WLHLTGLIHDLGKVLN 147 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p-~pd-W~qLtGliHDLGKll~ 147 (305)
.+...|.+++-+.+.+-.. .++ .+.|++|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 4667899988777654211 234 6899999999999653
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=29.93 E-value=27 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHh------------------hCCCCCcceehhheecccc
Q 021944 111 PQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 111 ~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (305)
+.-+|.+.|-+.+++ +..+++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 455798888777653 1124678999999999999
No 47
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=29.41 E-value=90 Score=23.78 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCceeeecCCCCCCh-hhhh--hhhHHHHHHHcCCcccC
Q 021944 259 VENLKWLETFSKYDLYSKSKVRIDV-EKVK--PYYLSLIEKVNVNKFLF 304 (305)
Q Consensus 259 ~~~l~wV~~Fn~yDLYSKs~~~pdv-e~lk--PYY~~LidKY~P~~l~~ 304 (305)
.++++||+...+-. ++.....|+ +.++ =-+-.||+++.|+.+.+
T Consensus 2 ~~ll~Win~~l~~~--~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~ 48 (108)
T PF00307_consen 2 KELLKWINSHLEKY--GKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDL 48 (108)
T ss_dssp HHHHHHHHHHHTTS--TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSG
T ss_pred HHHHHHHHHHcccc--cCCCCcCcHHHHhcCHHHHHHHHHHHhhccchh
Confidence 47899999887522 223344555 5555 46788999999997643
No 48
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=28.96 E-value=18 Score=35.29 Aligned_cols=36 Identities=39% Similarity=0.732 Sum_probs=23.9
Q ss_pred HHHHHHHHHH-HHHhhC----C-----------CCCcc---eehhheeccccccc
Q 021944 112 QIEHLLQTAE-AIRKDY----P-----------DEDWL---HLTGLIHDLGKVLN 147 (305)
Q Consensus 112 qi~H~lQTAE-aiR~d~----p-----------~pdW~---qLtGliHDLGKll~ 147 (305)
-+.|.|++|. |+|-.. | .+.|- -++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3688888774 444321 1 45674 36789999999775
No 49
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=28.75 E-value=20 Score=24.29 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.0
Q ss_pred CceeecCceeee
Q 021944 156 QWAVVGDTFPVG 167 (305)
Q Consensus 156 QW~vvGDTfpVG 167 (305)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 445679999986
No 50
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=27.92 E-value=31 Score=32.06 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHhh-----CCCCCcceehhheeccccc
Q 021944 108 LDEPQIEHLLQTAEAIRKD-----YPDEDWLHLTGLIHDLGKV 145 (305)
Q Consensus 108 ~dl~qi~H~lQTAEaiR~d-----~p~pdW~qLtGliHDLGKl 145 (305)
-++.-+...+.+|.+|-+. -.+++=+-+++|+||+|+.
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 3444455555666666432 1345567789999999975
No 51
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=27.54 E-value=28 Score=25.52 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=14.2
Q ss_pred heecccccccccCCCCCCCceeecCceeeec
Q 021944 138 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGC 168 (305)
Q Consensus 138 liHDLGKll~l~~f~~epQW~vvGDTfpVGC 168 (305)
.||.||+|... .|-|...-=.||+|=
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy 30 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGY 30 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCE
Confidence 58999999943 256777777899983
No 52
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=27.49 E-value=74 Score=32.22 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHH---HHHHHhhCCC----CCcceehhheecccccccccCCCCCCCceeecC
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQT---AEAIRKDYPD----EDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGD 162 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQT---AEaiR~d~p~----pdW~qLtGliHDLGKll~l~~f~~epQW~vvGD 162 (305)
..+.++-|..++..-|+.| -.|+..+ ++++-+.+|- -|=+++.|.+||+|||--
T Consensus 168 ~~~t~~~L~~~~E~R~~et----g~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKvai--------------- 228 (360)
T COG3437 168 LDETLEELAALLEVRDYET----GDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVAI--------------- 228 (360)
T ss_pred HHHHHHHHHHHHHhcccch----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhcccccC---------------
Confidence 3378888888887777766 3455444 3333333331 256788999999999972
Q ss_pred ceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhc---
Q 021944 163 TFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH--- 239 (305)
Q Consensus 163 TfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH--- 239 (305)
+++|...-- +.||+. --+-=+|.++=|.+|+.-+- +=+-|-.++|+|
T Consensus 229 --------PD~ILlKpg-~Lt~ee--------------------~~imk~H~~~G~~il~~s~~-~mq~a~eIa~~HHEr 278 (360)
T COG3437 229 --------PDSILLKPG-KLTSEE--------------------FEIMKGHPILGAEILKSSER-LMQVAAEIARHHHER 278 (360)
T ss_pred --------ChHHhcCCC-CCCHHH--------------------HHHHhcchHHHHHHHHHHHH-HHHHHHHHHHHhhhc
Confidence 233333111 222221 11122677777777765333 556677888888
Q ss_pred ---cccccccccc
Q 021944 240 ---SFYALHKSEA 249 (305)
Q Consensus 240 ---SFYpwH~~ga 249 (305)
|=||-|-.|.
T Consensus 279 wDGsGYPdgLkGd 291 (360)
T COG3437 279 WDGSGYPDGLKGD 291 (360)
T ss_pred cCCCCCCCCCCcc
Confidence 5566666554
No 53
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=26.76 E-value=21 Score=37.95 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.2
Q ss_pred eehhheeccccccc
Q 021944 134 HLTGLIHDLGKVLN 147 (305)
Q Consensus 134 qLtGliHDLGKll~ 147 (305)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46789999999994
No 54
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=25.94 E-value=43 Score=34.18 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCcceehhheecccccc
Q 021944 111 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 111 ~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 146 (305)
....|.+.+-..+.+. +..-++-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~-~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKL-TKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhcCCC
Confidence 4457777666665544 3345677899999999975
No 55
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.37 E-value=2e+02 Score=27.64 Aligned_cols=112 Identities=23% Similarity=0.260 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcC-CCCccccHHHHHHHHhhh-hcCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecccccc
Q 021944 69 TYDFVKKMREEYGK-LNRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 69 Tvdfv~~~~~~~~~-~~~~~MsI~EA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 146 (305)
++++.+++-..|.= -|....|-.+..+.|..+ .-+..||. -+.=..-||+.|++.+|- +|++
T Consensus 32 ~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~---i~TS~~at~~~l~~~~~~-------------~kv~ 95 (269)
T COG0647 32 ALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDD---IVTSGDATADYLAKQKPG-------------KKVY 95 (269)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHH---eecHHHHHHHHHHhhCCC-------------CEEE
Confidence 34444444333332 245666766677778773 22233321 134566788888887553 4555
Q ss_pred cccCCC--------CCCCceeecCcee-----eecccCCCccccc-------------ccccCCCCCCCCCCCCCCcccC
Q 021944 147 NLPSFG--------GLPQWAVVGDTFP-----VGCAFDESIVHHK-------------YFKENPDYSNPAFNTEYGVYSE 200 (305)
Q Consensus 147 ~l~~f~--------~epQW~vvGDTfp-----VGC~f~~~iv~~e-------------~F~~NPD~~~p~YnT~~GiY~p 200 (305)
.+ | ..-.|.++++.=+ |++..++.+.|.. |+..|||.. ..|+.| +.|
T Consensus 96 vi---G~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~p 168 (269)
T COG0647 96 VI---GEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRP 168 (269)
T ss_pred EE---CCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-Ccc
Confidence 43 2 1224566554444 6777777777644 677899984 456777 888
Q ss_pred CCC
Q 021944 201 GCG 203 (305)
Q Consensus 201 ~CG 203 (305)
+||
T Consensus 169 gaG 171 (269)
T COG0647 169 GAG 171 (269)
T ss_pred CcH
Confidence 887
No 56
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=24.31 E-value=20 Score=38.82 Aligned_cols=16 Identities=50% Similarity=0.899 Sum_probs=14.2
Q ss_pred CCCcceehhheecccc
Q 021944 129 DEDWLHLTGLIHDLGK 144 (305)
Q Consensus 129 ~pdW~qLtGliHDLGK 144 (305)
+++.+-|++|+||+||
T Consensus 464 ~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 464 DPELLYLAALLHDIGK 479 (850)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4667899999999999
No 57
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.76 E-value=1.4e+02 Score=23.58 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=33.7
Q ss_pred CccccHHHHHHHHhhhhcCC-CCCCCchHHHHHHHHHHHHHhh
Q 021944 85 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIRKD 126 (305)
Q Consensus 85 ~~~MsI~EA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~d 126 (305)
+.++|.-+|+..|.++|..- ++++.|.+..-+++.+-++-+.
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~ 45 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKL 45 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999998775 6689999998888877665543
No 58
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=22.25 E-value=31 Score=29.87 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=15.8
Q ss_pred ccccHHHHHHHHhhhhcC-CCCCCCchHHHHHHHH
Q 021944 86 VEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQT 119 (305)
Q Consensus 86 ~~MsI~EA~e~Ln~lvDe-SDPD~dl~qi~H~lQT 119 (305)
..||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 53 ~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 4799999999999 444 3332222334666654
No 59
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.29 E-value=25 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=30.1
Q ss_pred cccccCchhhHHHHHHhCCCCCChhhHHHhHhccccc
Q 021944 207 VMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYA 243 (305)
Q Consensus 207 V~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 243 (305)
..|...-+|+|-+++.+ +|+.+.-||||+=||.
T Consensus 145 ~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 145 KTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 56777899999999986 9999999999999987
No 60
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=20.80 E-value=75 Score=34.13 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCcceehhheecc
Q 021944 108 LDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (305)
Q Consensus 108 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (305)
+..|-|.|.+++|+.+..-..+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 457889999999999986522222 4568999996
Done!