Query 021944
Match_columns 305
No_of_seqs 139 out of 214
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 1E-146 5E-151 1019.4 17.5 274 27-304 10-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 1E-135 4E-140 932.9 14.6 247 55-304 3-250 (250)
3 3ccg_A HD superfamily hydrolas 92.4 0.05 1.7E-06 46.1 2.0 106 88-241 3-114 (190)
4 2o08_A BH1327 protein; putativ 92.4 0.055 1.9E-06 45.7 2.3 52 88-146 2-57 (188)
5 2ogi_A Hypothetical protein SA 91.8 0.069 2.4E-06 45.6 2.1 52 88-146 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 90.3 0.2 6.9E-06 45.2 3.8 130 80-247 72-224 (305)
7 3ljx_A MMOQ response regulator 89.1 0.2 6.9E-06 45.0 2.9 125 80-240 61-206 (288)
8 3i7a_A Putative metal-dependen 86.8 0.46 1.6E-05 42.3 3.7 120 79-241 68-215 (281)
9 2qgs_A Protein Se1688; alpha-h 83.4 0.6 2E-05 40.7 2.7 52 90-144 7-63 (225)
10 3djb_A Hydrolase, HD family; a 79.7 0.97 3.3E-05 40.0 2.7 56 90-145 7-63 (223)
11 3m1t_A Putative phosphohydrola 79.1 0.82 2.8E-05 40.7 2.1 123 82-240 62-203 (275)
12 3b57_A LIN1889 protein; Q92AN1 77.2 1.2 4.1E-05 38.2 2.5 55 92-146 9-64 (209)
13 2pq7_A Predicted HD superfamil 76.1 1.3 4.5E-05 37.9 2.5 53 90-145 15-71 (220)
14 2pjq_A Uncharacterized protein 76.0 0.86 2.9E-05 40.0 1.3 57 88-144 10-67 (231)
15 3dto_A BH2835 protein; all alp 75.6 1.6 5.4E-05 38.6 2.9 57 90-146 7-64 (223)
16 3sk9_A Putative uncharacterize 74.2 1.2 4.2E-05 40.6 1.8 46 103-151 18-83 (265)
17 3tm8_A BD1817, uncharacterized 69.6 1.6 5.3E-05 40.2 1.4 41 212-255 231-271 (328)
18 1vqr_A Hypothetical protein CJ 68.3 1.7 5.6E-05 38.9 1.3 132 80-245 76-229 (297)
19 3mem_A Putative signal transdu 66.0 1.7 6E-05 41.7 1.0 128 80-240 230-382 (457)
20 3kq5_A Hypothetical cytosolic 64.6 1.5 5.1E-05 42.9 0.3 37 111-147 75-120 (393)
21 1ynb_A Hypothetical protein AF 40.4 8.9 0.0003 33.1 1.1 36 110-146 37-80 (173)
22 3gw7_A Uncharacterized protein 38.4 8.5 0.00029 34.4 0.7 41 105-145 22-63 (239)
23 2hek_A Hypothetical protein; p 38.2 11 0.00038 35.7 1.5 38 110-147 49-91 (371)
24 3nr1_A HD domain-containing pr 37.2 30 0.001 29.5 4.0 53 90-142 7-62 (178)
25 3nqw_A CG11900; stringent resp 36.9 34 0.0012 29.2 4.2 53 90-142 9-64 (179)
26 3m5f_A Metal dependent phospho 34.8 12 0.00041 34.4 1.1 17 131-147 57-73 (244)
27 4dmb_A HD domain-containing pr 34.6 8.2 0.00028 34.1 -0.0 44 110-166 44-90 (204)
28 2paq_A 5'-deoxynucleotidase YF 34.2 9.5 0.00033 33.1 0.3 38 110-147 30-77 (201)
29 2l3i_A Aoxki4A, antimicrobial 33.8 34 0.0012 22.0 2.8 25 209-241 6-30 (30)
30 1chu_A Protein (L-aspartate ox 33.3 39 0.0013 32.7 4.5 52 73-124 443-501 (540)
31 2ksn_A Ubiquitin domain-contai 26.3 85 0.0029 26.7 4.8 47 69-126 34-83 (137)
32 3aql_A Poly(A) polymerase; tra 23.0 22 0.00075 34.1 0.7 36 111-146 266-303 (415)
33 2gz4_A Hypothetical protein AT 21.9 38 0.0013 30.1 1.9 61 86-146 27-91 (207)
34 2e5v_A L-aspartate oxidase; ar 20.2 68 0.0023 30.3 3.4 39 73-123 398-436 (472)
35 1vj7_A Bifunctional RELA/SPOT; 20.2 54 0.0019 31.6 2.7 52 90-142 28-79 (393)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=1.4e-146 Score=1019.41 Aligned_cols=274 Identities=46% Similarity=0.872 Sum_probs=252.5
Q ss_pred eecCC-CCCCCCc----cccccCCCccccchhhHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhh
Q 021944 27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV 101 (305)
Q Consensus 27 ~~dg~-f~~p~~~----~~~~~fR~Y~~~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lv 101 (305)
.+|++ |.+|+.+ +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 37877 6888877 77889999997 557799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecccccccccCCCCCCCceeecCceeeecccCCCccccc-cc
Q 021944 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YF 180 (305)
Q Consensus 102 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F 180 (305)
||||||+|+|||+||||||||||+|||..||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999997777999999999999999987 499999999999999999999999999 99
Q ss_pred ccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHH
Q 021944 181 KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVE 260 (305)
Q Consensus 181 ~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~ 260 (305)
++|||.+||+|||+||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~ 245 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD 245 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeecCCCCCChhhhhhhhHHHHHHHcCCcccC
Q 021944 261 NLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKVNVNKFLF 304 (305)
Q Consensus 261 ~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~LidKY~P~~l~~ 304 (305)
||+||++||||||||||+++||||+|||||++|||||||++|+|
T Consensus 246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence 99999999999999999999999999999999999999999998
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1.3e-135 Score=932.86 Aligned_cols=247 Identities=49% Similarity=0.908 Sum_probs=234.2
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCcce
Q 021944 55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 134 (305)
Q Consensus 55 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q 134 (305)
+||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||++++||+|||||||+||+|+++.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred ehhheecccccccccCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCc
Q 021944 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213 (305)
Q Consensus 135 LtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGH 213 (305)
||||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 489999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCceeeecCCCCCChhhhhhhhHHH
Q 021944 214 DDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 293 (305)
Q Consensus 214 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~L 293 (305)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++||||+|||||++|
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccC
Q 021944 294 IEKVNVNKFLF 304 (305)
Q Consensus 294 idKY~P~~l~~ 304 (305)
||||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 99999999998
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=92.45 E-value=0.05 Score=46.06 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=65.6
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCcceehhheecccccccccCCCCCCCceeecCc
Q 021944 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDT 163 (305)
Q Consensus 88 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll~l~~f~~epQW~vvGDT 163 (305)
|++-++.+.|.+.+++ ....|.+.+|...+. .++ +++-..+.||+||+||+..-
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~~~--------------- 60 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPG--------------- 60 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCH---------------
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH---------------
Confidence 7888999999887653 357899988876553 222 45668899999999997521
Q ss_pred eeeecccCCCccc-ccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCC-ChhhHHHhHhccc
Q 021944 164 FPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTL-PSAALFIIRYHSF 241 (305)
Q Consensus 164 fpVGC~f~~~iv~-~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stL-P~eaL~mIRyHSF 241 (305)
+.|+- .. +.+.+... .+.-...--|.++=+.+++. ...+ |++.+..||+|..
T Consensus 61 --------~~il~~~~--~~~~~l~~---------------~E~~~~~~~H~~~Ga~il~~-~~~~~~~~i~~aI~~Hh~ 114 (190)
T 3ccg_A 61 --------EKIIEICT--NEGYELGD---------------EDIRNSYLLHGLAGRILAKK-VIGIDDEDVLNAIEFHTT 114 (190)
T ss_dssp --------HHHHHHHH--HTTCCCCH---------------HHHTTTTC-CHHHHHHHHHH-TTCCCCHHHHHHHHTTTT
T ss_pred --------HHHHHHHH--HcCCCCCH---------------HHHhHHHcchHHHHHHHHHH-hcCCCcHHHHHHHHHhcC
Confidence 01100 00 00000000 00101122488888999987 2456 8999999999974
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=92.43 E-value=0.055 Score=45.70 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCcceehhheecccccc
Q 021944 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 88 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 146 (305)
|++.++.+.|.+.+++ .-..|.+.+|...+. .+| +++=.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887542 467899988776553 223 345577999999999985
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=91.76 E-value=0.069 Score=45.59 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=39.6
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCcceehhheecccccc
Q 021944 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 88 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 146 (305)
|++-++.+.|.+.+++ .-..|.+.+|...+. .+| +++-..+.||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8899999999887653 357899988776553 223 346678999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=90.27 E-value=0.2 Score=45.23 Aligned_cols=130 Identities=19% Similarity=0.140 Sum_probs=78.5
Q ss_pred hcCCCCccccHHHHHHHHh--------------hhhcCCCCCCCch-HHHHHHHHHHHHHh---hC--CCCCcceehhhe
Q 021944 80 YGKLNRVEMSIWECCELLN--------------DVVDESDPDLDEP-QIEHLLQTAEAIRK---DY--PDEDWLHLTGLI 139 (305)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~dl~-qi~H~lQTAEaiR~---d~--p~pdW~qLtGli 139 (305)
+.++.+.--||.+|+-.|- ..+....+..+.. -..|.+.+|..++. .. ++++-+-++||+
T Consensus 72 ~~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agll 151 (305)
T 3hc1_A 72 LYSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLL 151 (305)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3345667788999987762 1222222223322 35899998887763 22 356778899999
Q ss_pred ecccccccccCCCCCCCceeecCceeeecccCCCccccccc---ccCCCCCCCCCCCCCCcccCCCCccccccccCchhh
Q 021944 140 HDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYF---KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDY 216 (305)
Q Consensus 140 HDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F---~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEY 216 (305)
||+||+.....+ .+.|. +.. ...|.. -.-.+.-.|-..|.+.
T Consensus 152 HDIGkl~l~~~~---------p~~~~------------~il~~~~~~~~~--------------l~~~E~~~~~~~H~~i 196 (305)
T 3hc1_A 152 HDVGEVFINFFR---------GKEFS------------QVVTLVDEEKIT--------------FGQAEERLFGTSHCEV 196 (305)
T ss_dssp TTHHHHHHHHHS---------HHHHH------------HHHHHHHHHCCC--------------HHHHHHHHHSSCHHHH
T ss_pred HHhhHHHHHHHH---------HHHHH------------HHHHHHHhcCCC--------------HHHHHHHHHCCCHHHH
Confidence 999999853111 01110 000 001100 0012334555679999
Q ss_pred HHHHHHhCCCCCChhhHHHhHhccccccccc
Q 021944 217 MYLVAKENKTTLPSAALFIIRYHSFYALHKS 247 (305)
Q Consensus 217 lY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~ 247 (305)
=+.+++. ..+|++...+||+|-- ||...
T Consensus 197 G~~ll~~--w~lp~~i~~~I~~HHe-~~~~~ 224 (305)
T 3hc1_A 197 GFALAKR--WSLNEFICDTILYHHD-IEAVP 224 (305)
T ss_dssp HHHHHHH--TTCCHHHHHHHHHTTC-GGGCS
T ss_pred HHHHHHH--cCCCHHHHHHHHHhCC-hhhcc
Confidence 9999997 5899999999999864 55543
No 7
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=89.12 E-value=0.2 Score=45.05 Aligned_cols=125 Identities=14% Similarity=0.248 Sum_probs=74.9
Q ss_pred hcCCCCccccHHHHHHHHh-----------hh---hcCCCC-CCCch-HHHHHHHHHHHHHh---hCC--CCCcceehhh
Q 021944 80 YGKLNRVEMSIWECCELLN-----------DV---VDESDP-DLDEP-QIEHLLQTAEAIRK---DYP--DEDWLHLTGL 138 (305)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln-----------~l---vDeSDP-D~dl~-qi~H~lQTAEaiR~---d~p--~pdW~qLtGl 138 (305)
+.++.+.--||.+|+-+|= .+ ++...+ ..+.. -..|.+++|..++. ..+ +++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3345677789999998761 11 121111 12333 35899999887764 223 5678899999
Q ss_pred eecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHH
Q 021944 139 IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMY 218 (305)
Q Consensus 139 iHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY 218 (305)
+||+||+++...+ | +.|. +.+.. +.. ++ . .-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~---p------~~~~------------~il~~-~~~-~~-------l----~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAW---P------EEYS------------ECLRK-ADG-EA-------L----IALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHC---H------HHHH------------HHHHH-CCH-HH-------H----HHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHH---H------HHHH------------HHHHH-hhc-CC-------H----HHHHHHHHccCHHHHHH
Confidence 9999999864111 1 0010 11110 000 00 0 11233455678999999
Q ss_pred HHHHhCCCCCChhhHHHhHhcc
Q 021944 219 LVAKENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 219 ~Vlk~n~stLP~eaL~mIRyHS 240 (305)
.+++. -.||++...+||+|-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99997 479999999999985
No 8
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=86.83 E-value=0.46 Score=42.28 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=73.0
Q ss_pred HhcCCCCccccHHHHHHHH--------------hhhhcCCCCCC--Cc-hHHHHHHHHHHHHH---hh--------CCCC
Q 021944 79 EYGKLNRVEMSIWECCELL--------------NDVVDESDPDL--DE-PQIEHLLQTAEAIR---KD--------YPDE 130 (305)
Q Consensus 79 ~~~~~~~~~MsI~EA~e~L--------------n~lvDeSDPD~--dl-~qi~H~lQTAEaiR---~d--------~p~p 130 (305)
-+..+.+.--||.+|+-.| ..+++...|-. .. .-..|.+.+|..++ +. ..++
T Consensus 68 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~ 147 (281)
T 3i7a_A 68 ALYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNY 147 (281)
T ss_dssp TTTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCH
T ss_pred HHhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCH
Confidence 3445667778999999876 12333322221 11 13588888875544 22 2456
Q ss_pred CcceehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccc
Q 021944 131 DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMS 210 (305)
Q Consensus 131 dW~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mS 210 (305)
+-.-++||+||+||+..+... +.+| +.+. + +. -++ -.+.
T Consensus 148 ~~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~-~-----~~------------~~~-~~~~ 186 (281)
T 3i7a_A 148 DTLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT-T-----IE------------HLR-SLVR 186 (281)
T ss_dssp HHHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC-C-----HH------------HHH-HHHH
T ss_pred HHHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc-C-----hH------------HHH-HHHh
Confidence 778899999999999753111 0111 1111 0 00 011 2234
Q ss_pred cCchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 021944 211 WGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (305)
Q Consensus 211 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (305)
..|.+.=+.+++. -.+|++...+||+|-=
T Consensus 187 ~~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 187 KMQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 5699999999997 4799999999999864
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=83.43 E-value=0.6 Score=40.74 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHH---HHHHH-HhhC-CCCCcceehhheecccc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQ---TAEAI-RKDY-PDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQ---TAEai-R~d~-p~pdW~qLtGliHDLGK 144 (305)
|.++.+.+...+...|+.- .+.|.+. +|..| .+.. .+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3444455555555444443 4566655 45556 5433 47788999999999997
No 10
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=79.75 E-value=0.97 Score=39.97 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCcceehhheeccccc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 145 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKl 145 (305)
|..+.+.+.+.....||.-++.-+.-.+.+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44455556666666677777666666677777776543 467889999999999983
No 11
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=79.05 E-value=0.82 Score=40.69 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCccccHHHHHHHHh--------------hhhcCCCCCCCchH-HHHHHHHHHHHHhh----CCCCCcceehhheecc
Q 021944 82 KLNRVEMSIWECCELLN--------------DVVDESDPDLDEPQ-IEHLLQTAEAIRKD----YPDEDWLHLTGLIHDL 142 (305)
Q Consensus 82 ~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~dl~q-i~H~lQTAEaiR~d----~p~pdW~qLtGliHDL 142 (305)
++.+.--||.+|+-.|= ..++. .|..++.. ..|.+.+|..++.- -.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34556778888887761 12222 23334433 47999888766532 2356778899999999
Q ss_pred cccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHH
Q 021944 143 GKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAK 222 (305)
Q Consensus 143 GKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk 222 (305)
||++....+ |++. . .|. +..+ +. .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~------~-------~i~--~~~~--~~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVA------A-------TIS--AAVA--DG--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHH------H-------HHH--HHHH--TT--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHH------H-------HHH--HHHh--CC--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999854111 1110 0 000 0000 00 000 012334455679999999999
Q ss_pred hCCCCCChhhHHHhHhcc
Q 021944 223 ENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 223 ~n~stLP~eaL~mIRyHS 240 (305)
. -.||++....||||-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 7 479999999999985
No 12
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=77.22 E-value=1.2 Score=38.22 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh-CCCCCcceehhheecccccc
Q 021944 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 92 EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGliHDLGKll 146 (305)
++.+.+...+...|+.-++.-+.-.+++|..|.+. -.+++-+.+.+|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 34444555554445555555555556666666653 25778889999999999853
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=76.13 E-value=1.3 Score=37.88 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHH---HHHHhhC-CCCCcceehhheeccccc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTA---EAIRKDY-PDEDWLHLTGLIHDLGKV 145 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTA---EaiR~d~-p~pdW~qLtGliHDLGKl 145 (305)
+.++.+.+.......|+..+ ..|.+.++ ..|.+.. .+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555666665544444444 45555544 4444432 366788899999999863
No 14
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=76.00 E-value=0.86 Score=39.97 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCcceehhheecccc
Q 021944 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGK 144 (305)
Q Consensus 88 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGK 144 (305)
+-|.++.+.+...+...++.-++.-+.-.+++|..|.+.. .+++-+.+.+|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455666666666655556665555555566677776532 57788899999999998
No 15
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=75.64 E-value=1.6 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCcceehhheecccccc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKVL 146 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKll 146 (305)
|..+.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 44455556666666667666666666677777775442 4667788999999999853
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=74.21 E-value=1.2 Score=40.56 Aligned_cols=46 Identities=33% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHh---------------hCCC-----CCcceehhheecccccccccCC
Q 021944 103 ESDPDLDEPQIEHLLQTAEAIRK---------------DYPD-----EDWLHLTGLIHDLGKVLNLPSF 151 (305)
Q Consensus 103 eSDPD~dl~qi~H~lQTAEaiR~---------------d~p~-----pdW~qLtGliHDLGKll~l~~f 151 (305)
.|+.+- .|...|++-||+..+. ..|- .+|+...|++||+||.- +.|
T Consensus 18 ks~~~~-~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~f 83 (265)
T 3sk9_A 18 KSGNPF-HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVF 83 (265)
T ss_dssp BSSSTT-SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGG
T ss_pred cCCCCc-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHH
Confidence 344443 8899999999988664 1232 36899999999999995 445
No 17
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=69.57 E-value=1.6 Score=40.20 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.8
Q ss_pred CchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCC
Q 021944 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMN 255 (305)
Q Consensus 212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n 255 (305)
.|.++=|.++.. +..+|++++.+||+|-= .|--.| -..|..
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~HHE-r~dGsG-P~gl~g 271 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQHEE-TINGTG-PKGLRE 271 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHTTC-CTBSCS-TTCCBG
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHhcC-CCCCCC-CCCCCc
Confidence 388999994433 36799999999999942 233345 444444
No 18
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=68.34 E-value=1.7 Score=38.89 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=73.0
Q ss_pred hcCCCCccccHHHHHHHHh-----hhh------cC--CCCC---CCch-HHHHHHHHHHHHHhh---C--CCCCcceehh
Q 021944 80 YGKLNRVEMSIWECCELLN-----DVV------DE--SDPD---LDEP-QIEHLLQTAEAIRKD---Y--PDEDWLHLTG 137 (305)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln-----~lv------De--SDPD---~dl~-qi~H~lQTAEaiR~d---~--p~pdW~qLtG 137 (305)
+..+.+.--||.+|+.+|- +++ +. ++++ .+.. -..|.+.+|..+++- . .+++=.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4456666689999998772 111 11 1111 1222 347877776655432 1 2345667899
Q ss_pred heecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhH
Q 021944 138 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYM 217 (305)
Q Consensus 138 liHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYl 217 (305)
|+||+||+.....+....+- .++..... + | .+-.-.+.-.+...|.+.=
T Consensus 156 LLHDIGkl~l~~~~p~~~~~-------------------~~il~~~~---------~-~--~~l~~~E~~~~g~~H~~iG 204 (297)
T 1vqr_A 156 MLLRLGIVIFSNFLIQNHKD-------------------KDFLAFLN---------K-N--ENLALAENEFLGVDHISFL 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHH---------H-H--CCHHHHHHHHTSSCHHHHH
T ss_pred HHHHccHHHHHHHChhhhhH-------------------HHHHHHHH---------c-C--CCHHHHHHHHHCCCHHHHH
Confidence 99999999853111000000 00000000 0 0 0001133445556799999
Q ss_pred HHHHHhCCCCCChhhHHHhHhccccccc
Q 021944 218 YLVAKENKTTLPSAALFIIRYHSFYALH 245 (305)
Q Consensus 218 Y~Vlk~n~stLP~eaL~mIRyHSFYpwH 245 (305)
+.+++.. .||++...+||+|-- ||.
T Consensus 205 a~ll~~w--~lp~~i~~aI~~Hh~-~~~ 229 (297)
T 1vqr_A 205 GFLLHRW--NFDDVLIESICFVRT-PHA 229 (297)
T ss_dssp HHHHHHT--TCCHHHHHHHHTTTC-GGG
T ss_pred HHHHHHC--CCCHHHHHHHHHhcC-hhh
Confidence 9999874 799999999999962 443
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=66.00 E-value=1.7 Score=41.74 Aligned_cols=128 Identities=16% Similarity=0.272 Sum_probs=74.1
Q ss_pred hcCCCCccccHHHHHH-HH--h---------hhhcC---C-C-CCCCchHHHHHHHHHHHHHh---hCC-----CCCcce
Q 021944 80 YGKLNRVEMSIWECCE-LL--N---------DVVDE---S-D-PDLDEPQIEHLLQTAEAIRK---DYP-----DEDWLH 134 (305)
Q Consensus 80 ~~~~~~~~MsI~EA~e-~L--n---------~lvDe---S-D-PD~dl~qi~H~lQTAEaiR~---d~p-----~pdW~q 134 (305)
|.++.+.--||.+|+- +| + .+.+. . + +..-..-..|.+.+|..++. ..+ +++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345567789999997 43 1 11221 1 1 11112346899988876653 222 345677
Q ss_pred ehhheecccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCch
Q 021944 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHD 214 (305)
Q Consensus 135 LtGliHDLGKll~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHD 214 (305)
++||+||+||+++...+ |+. |. .|. +..+.||... -.-.+.-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i~--~~~~~~~~~~-------------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LVC--RSLEVSPHID-------------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HHH--HHHHHCTTSC-------------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HHH--HHHHhcCCCC-------------HHHHHHHHHcCCHH
Confidence 99999999999964111 110 00 000 0001122110 00123445667899
Q ss_pred hhHHHHHHhCCCCCChhhHHHhHhcc
Q 021944 215 DYMYLVAKENKTTLPSAALFIIRYHS 240 (305)
Q Consensus 215 EYlY~Vlk~n~stLP~eaL~mIRyHS 240 (305)
+.=+.+++.. .||++-...||||-
T Consensus 359 ~vGa~Ll~~W--~lP~~i~~aI~~HH 382 (457)
T 3mem_A 359 QIAAQLMENW--GMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHhc
Confidence 9999999874 79999999999986
No 20
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=64.61 E-value=1.5 Score=42.92 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=27.3
Q ss_pred hHHHHHHH-H---HHHHHhhCCCC-----Ccceehhheeccccccc
Q 021944 111 PQIEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 111 ~qi~H~lQ-T---AEaiR~d~p~p-----dW~qLtGliHDLGKll~ 147 (305)
.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 75 GLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 75 SLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 45789998 5 67788888642 14455679999999974
No 21
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=40.36 E-value=8.9 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHH---HHhhCCCCCc-----ceehhheecccccc
Q 021944 110 EPQIEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 146 (305)
Q Consensus 110 l~qi~H~lQTAEa---iR~d~p~pdW-----~qLtGliHDLGKll 146 (305)
.+.-+|.+++|-. +-. ++.-|+ .-..+|+||||.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5567899988865 333 355666 44679999999987
No 22
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=38.40 E-value=8.5 Score=34.43 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCCCchHHHHHHHHHHHHHhhC-CCCCcceehhheeccccc
Q 021944 105 DPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 145 (305)
Q Consensus 105 DPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKl 145 (305)
|+.-++.-+.-.+.+|..|.+.. .+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44445555555556666665433 467888999999999995
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=38.20 E-value=11 Score=35.74 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHhh---CCCC--Ccceehhheeccccccc
Q 021944 110 EPQIEHLLQTAEAIRKD---YPDE--DWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p~p--dW~qLtGliHDLGKll~ 147 (305)
-.-++|.+.+|...|+- .+-+ .-..++||+||+|+.-+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 44578888887776642 2322 45788999999999873
No 24
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=37.21 E-value=30 Score=29.52 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhcCC-CCCC-CchHHHHHHHHHHHHHhhCCCCCc-ceehhheecc
Q 021944 90 IWECCELLNDVVDES-DPDL-DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (305)
Q Consensus 90 I~EA~e~Ln~lvDeS-DPD~-dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 142 (305)
|.+|+++-....... ..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 445555554433322 2232 578899999999999766342344 5567899985
No 25
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=36.89 E-value=34 Score=29.16 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhcCC-CCC-CCchHHHHHHHHHHHHHhhCCCCCc-ceehhheecc
Q 021944 90 IWECCELLNDVVDES-DPD-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (305)
Q Consensus 90 I~EA~e~Ln~lvDeS-DPD-~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 142 (305)
|.+|+++-....... +.+ +..|-|.|.+.+|+.+..+.+-.|- ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 556666665544333 233 5688999999999999855342233 4457899985
No 26
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=34.84 E-value=12 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.4
Q ss_pred Ccceehhheeccccccc
Q 021944 131 DWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 131 dW~qLtGliHDLGKll~ 147 (305)
+++-++|+.||+||.--
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 55778999999999973
No 27
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=34.56 E-value=8.2 Score=34.14 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC--cceehhheecccccccccCCCCCCCceeecCceee
Q 021944 110 EPQIEHLLQTAEAIRKDYP-DED--WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (305)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p-~pd--W~qLtGliHDLGKll~l~~f~~epQW~vvGDTfpV 166 (305)
.+.-+|.+++|-..---.+ .-| =.-..+|+|||+.++ +||+.|+
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 4567898888876554322 123 344568999999887 5788663
No 28
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=34.21 E-value=9.5 Score=33.10 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHH-------hhCC---CCCcceehhheeccccccc
Q 021944 110 EPQIEHLLQTAEAIR-------KDYP---DEDWLHLTGLIHDLGKVLN 147 (305)
Q Consensus 110 l~qi~H~lQTAEaiR-------~d~p---~pdW~qLtGliHDLGKll~ 147 (305)
.+..+|.+++|-... +.+| +++=..+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 456789998885432 2333 3333445699999999983
No 29
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=33.82 E-value=34 Score=22.05 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.3
Q ss_pred cccCchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 021944 209 MSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (305)
Q Consensus 209 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (305)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999987
No 30
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=33.35 E-value=39 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhhcC-------CCCCCCchHHHHHHHHHHHHH
Q 021944 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDE-------SDPDLDEPQIEHLLQTAEAIR 124 (305)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDe-------SDPD~dl~qi~H~lQTAEaiR 124 (305)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++.+|++|-
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~ 501 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIV 501 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 4556677888889899999999999877432 222223457889999999873
No 31
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=26.27 E-value=85 Score=26.74 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCC---CccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh
Q 021944 69 TYDFVKKMREEYGKLN---RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD 126 (305)
Q Consensus 69 Tvdfv~~~~~~~~~~~---~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d 126 (305)
|-+=..++|++|-.-- .++.-||+|+..--+++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 4455677999997654 578899999998888776555 5788888766
No 32
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=23.05 E-value=22 Score=34.13 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHH-HHhhCCCCCcceehhhee-cccccc
Q 021944 111 PQIEHLLQTAEA-IRKDYPDEDWLHLTGLIH-DLGKVL 146 (305)
Q Consensus 111 ~qi~H~lQTAEa-iR~d~p~pdW~qLtGliH-DLGKll 146 (305)
...+|++++... |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 456888876544 666667778999999999 999954
No 33
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=21.91 E-value=38 Score=30.08 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHhhhhcCC---CCCCCchHHHHHHHHHHHHHhhCCCCCc-ceehhheecccccc
Q 021944 86 VEMSIWECCELLNDVVDES---DPDLDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLGKVL 146 (305)
Q Consensus 86 ~~MsI~EA~e~Ln~lvDeS---DPD~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDLGKll 146 (305)
..+.|.+-++.|..+.--+ .-..-.+.-+|.+++|.....-+|.-++ ..+.+|+||++.++
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 4455555555554321111 1123467789999999877643332222 56778999999988
No 34
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=20.24 E-value=68 Score=30.28 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHH
Q 021944 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAI 123 (305)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEai 123 (305)
.++...+|...-|.+-++.+|++.|+.|-.+ |+++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 4556677788889999999999999988532 78888776
No 35
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=20.16 E-value=54 Score=31.60 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceehhheecc
Q 021944 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (305)
Q Consensus 90 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (305)
|.+|+++-.......-..+..|-|.|.+.+|+.+..-..+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 566777666554333333457889999999999886523333 5678999995
Done!