BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021945
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
Length = 130
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 85/107 (79%), Gaps = 2/107 (1%)
Query: 160 VEFLFEKVLTPSDVGKLNRMVIPKQQAEKHFAL-SSEIASKGLLLNFEDSTQKVWRLRYC 218
E LFEK +TPSDVGKLNR+VIPK AEKHF L SS ++ KG+LLNFED KVWR RY
Sbjct: 10 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYS 69
Query: 219 YWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCK 265
YW+SSQSYVLTKGWSRFVKEK ++AGD VSF RSN G + +L+I K
Sbjct: 70 YWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSN-GQDQQLYIGWK 115
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 33 YKGVVPQPNGRWGAQIYEKHQ---RVWLGTFIEEEEAARVYDTAALRFRGQNAITNF 86
Y+GV +P G++ A+I + + RVWLGTF E+AA YD AA R RG A+ NF
Sbjct: 3 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
46 Structures
Length = 70
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 33 YKGVVPQPNGRWGAQIYEKHQ---RVWLGTFIEEEEAARVYDTAALRFRGQNAITNF 86
Y+GV +P G++ A+I + + RVWLGTF E+AA YD AA R RG A+ NF
Sbjct: 6 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 128 SKQNYACVGISCYNNSSGFSDLFGSNCFQETPVEFLFEKVLTPSDVGKLNRMVIPKQQAE 187
S N+ GI+ NN F N E P E L +V P+ K+ +++ K+Q+E
Sbjct: 347 SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVL--EVSFPASGKKVEKLI--KKQSE 402
Query: 188 KHFA 191
HF
Sbjct: 403 SHFV 406
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 128 SKQNYACVGISCYNNSSGFSDLFGSNCFQETPVEFLFEKVLTPSDVGKLNRMVIPKQQAE 187
S N+ GI+ NN F N E P E L +V P+ K+ +++ K+Q+E
Sbjct: 346 SNLNFFAFGINAENNQRNFLAGGKDNVMSEIPTEVL--EVSFPASGKKVEKLI--KKQSE 401
Query: 188 KHFA 191
HF
Sbjct: 402 SHFV 405
>pdb|4G6U|B Chain B, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM ESCHERICHIA
COLI
Length = 177
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 49 YEKHQRVWLGTFIEEEEAARVYDTAALRFRGQNAITNFRTSLETDDEDDYMEKIFLSSHS 108
+ K Q W F+ + + V + L G++ + + R L+ D +D + + L + S
Sbjct: 3 FNKDQDYWANIFVTPDFLS-VETYSGLGXTGRDPLFSPRL-LQPDVDDKSLGEEILQALS 60
Query: 109 KAEIVDMLRKHTYKHELEQSKQNYAC 134
+ +D+L + +LE+SK+ YA
Sbjct: 61 DSRTLDVLEERVAFFDLEKSKEQYAA 86
>pdb|3N54|B Chain B, Crystal Structure Of The Gerbc Protein
Length = 350
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 31 SKYKG--VVPQPNGRWGAQIYEKHQRVWLGTFIEEEEAARVYDTAALRFRGQNAITNFRT 88
S Y G ++P GR A +Y ++ +L ++ E+ YD A + RG N + F +
Sbjct: 140 SGYNGKIMIPLRIGR--ASVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLS 197
Query: 89 SLET 92
+ ET
Sbjct: 198 ADET 201
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 54 RVWLGTFIEEEEAARVYDTAALRFRGQNAITNFRTSLETDDEDDYMEKIFLS 105
R+ +G + A +V A +F +++ F TS + +++D++E IF++
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,277,323
Number of Sequences: 62578
Number of extensions: 382212
Number of successful extensions: 1226
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 9
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)