Query 021945
Match_columns 305
No_of_seqs 308 out of 1556
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 3.7E-31 1.3E-35 220.8 15.2 114 157-271 7-121 (130)
2 1gcc_A Ethylene responsive ele 99.9 1.8E-22 6E-27 148.2 5.8 58 32-89 2-62 (63)
3 4i1k_A B3 domain-containing tr 99.7 4.1E-17 1.4E-21 138.4 12.2 98 159-266 44-141 (146)
4 1yel_A AT1G16640; CESG, protei 99.6 3.8E-15 1.3E-19 119.0 10.2 91 161-264 8-98 (104)
5 1na6_A Ecorii, restriction end 94.6 0.037 1.3E-06 53.3 5.6 92 160-252 17-123 (404)
6 3igm_B PF14_0633 protein; AP2 93.4 0.036 1.2E-06 41.2 2.1 28 28-55 3-31 (77)
7 1u3e_M HNH homing endonuclease 91.4 0.0016 5.4E-08 55.7 -8.6 54 16-71 93-146 (174)
8 3o27_A Putative uncharacterize 74.7 2.6 9E-05 30.4 3.3 41 224-267 23-63 (68)
9 1z1b_A Integrase; protein-DNA 56.2 9.2 0.00031 34.2 4.0 41 35-77 15-55 (356)
10 3k2y_A Uncharacterized protein 50.3 15 0.00052 28.8 3.9 17 237-253 25-41 (109)
11 3jtz_A Integrase; four strande 45.5 66 0.0023 23.8 6.7 42 36-77 28-75 (88)
12 2k75_A Uncharacterized protein 42.7 35 0.0012 26.1 4.9 44 201-264 40-84 (106)
13 1eik_A RNA polymerase subunit 38.1 39 0.0013 24.9 4.2 32 233-266 43-74 (77)
14 4ayb_H DNA-directed RNA polyme 35.9 43 0.0015 25.0 4.2 32 233-266 49-80 (84)
15 3m7a_A Uncharacterized protein 34.7 51 0.0018 26.8 4.9 48 199-249 82-140 (140)
16 3kf8_B Protein TEN1; OB fold; 34.2 21 0.00071 28.8 2.3 22 282-303 20-41 (123)
17 1hmj_A RPB5, protein (subunit 33.8 43 0.0015 24.8 3.8 32 233-266 41-72 (78)
18 1pqh_A Aspartate 1-decarboxyla 32.6 2.1E+02 0.007 23.5 10.4 75 163-251 27-106 (143)
19 2glw_A PHS018, 92AA long hypot 31.8 1.6E+02 0.0055 22.0 8.1 20 234-253 67-86 (92)
20 1yfb_A Transition state regula 31.5 32 0.0011 23.8 2.7 18 171-188 16-33 (59)
21 2qcp_X Cation efflux system pr 31.1 46 0.0016 24.3 3.6 16 238-253 51-66 (80)
22 2e63_A KIAA1787 protein; struc 30.8 32 0.0011 28.9 3.1 25 238-265 115-139 (170)
23 3e0e_A Replication protein A; 30.6 67 0.0023 24.0 4.6 33 201-249 40-72 (97)
24 2ftc_I Mitochondrial ribosomal 30.6 70 0.0024 25.2 4.9 36 43-78 79-114 (118)
25 4dok_A Similarity to chalcone- 30.6 37 0.0013 29.5 3.5 33 233-267 130-162 (208)
26 2vb2_X Copper protein, cation 30.1 46 0.0016 24.8 3.5 16 238-253 59-74 (88)
27 1x60_A Sporulation-specific N- 29.8 31 0.0011 24.4 2.5 23 53-75 46-68 (79)
28 3pjy_A Hypothetical signal pep 29.4 1.2E+02 0.004 24.5 6.2 47 200-249 69-126 (136)
29 3ju0_A Phage integrase; four s 29.1 1.3E+02 0.0045 23.1 6.2 46 36-81 28-80 (108)
30 2l55_A SILB,silver efflux prot 29.1 92 0.0031 22.8 5.0 28 238-266 45-73 (82)
31 2k50_A Replication factor A re 27.1 1.9E+02 0.0066 21.6 6.9 39 201-253 45-83 (115)
32 4doi_A Chalcone--flavonone iso 26.6 43 0.0015 29.9 3.3 32 233-267 147-178 (246)
33 1uta_A FTSN, MSGA, cell divisi 25.4 37 0.0013 24.3 2.3 23 53-75 46-68 (81)
34 2c45_A Aspartate 1-decarboxyla 24.0 2.9E+02 0.01 22.4 9.7 75 163-251 10-89 (139)
35 2cbp_A Cucumber basic protein; 23.9 35 0.0012 25.8 1.9 19 235-253 18-36 (96)
36 1oa8_A Ataxin-1; RNA binding, 23.8 1.1E+02 0.0037 24.9 4.9 32 221-252 86-127 (133)
37 3dm3_A Replication factor A; p 23.7 1.3E+02 0.0045 22.8 5.3 35 201-252 43-77 (105)
38 3oug_A Aspartate 1-decarboxyla 23.1 2.8E+02 0.0095 21.8 9.8 75 163-251 13-92 (114)
39 1eyq_A Chalcone-flavonone isom 23.1 58 0.002 28.4 3.4 31 234-267 137-167 (222)
40 2p5d_A UPF0310 protein mjecl36 20.9 80 0.0027 25.6 3.6 19 230-250 29-47 (147)
41 1b69_A Protein (integrase); in 20.2 1E+02 0.0035 22.2 3.6 27 30-56 9-36 (69)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.97 E-value=3.7e-31 Score=220.79 Aligned_cols=114 Identities=64% Similarity=1.049 Sum_probs=104.5
Q ss_pred CCcceeeeeeecccCCCCCCceEEeeHHHHHhcCCCcccc-cCCCeEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchh
Q 021945 157 ETPVEFLFEKVLTPSDVGKLNRMVIPKQQAEKHFALSSEI-ASKGLLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRF 235 (305)
Q Consensus 157 ~~~~~~lF~K~Lt~SDv~~~~rL~iPk~~ae~~fP~~~~~-~~~g~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~F 235 (305)
.++++++|.|+||+|||+++++|+||+++|++|||.++.. ..+++.|.++|.+|++|+|+|+||+++++|+|++||..|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 5788999999999999998899999999999999998853 457899999999999999999999988999999999999
Q ss_pred hhhcCCCCCCEEEEEecccCCCCeEEEEEEeccCCC
Q 021945 236 VKEKGVKAGDTVSFWRSNVGSNSKLFIDCKLQQNGN 271 (305)
Q Consensus 236 V~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~~~~~~ 271 (305)
|++|+|++||+|+|+++. ..+++|+|++|++..++
T Consensus 87 V~~~~L~~GD~~~F~~~~-~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSN-GQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECC-SSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEec-CCCcEEEEEEEECCCCC
Confidence 999999999999999987 56789999999996544
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=1.8e-22 Score=148.24 Aligned_cols=58 Identities=47% Similarity=0.828 Sum_probs=55.4
Q ss_pred ceEEeEECCCCeEEEEEEe---CCeEEeecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 021945 32 KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFIEEEEAARVYDTAALRFRGQNAITNFRTS 89 (305)
Q Consensus 32 ~yrGV~~~~~grw~A~I~~---~~k~v~LG~f~t~EeAA~AYD~Aa~~~~G~~a~~NFp~~ 89 (305)
+||||+++++|||+|+|+. +++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999889999999999 579999999999999999999999999999999999975
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.72 E-value=4.1e-17 Score=138.40 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=80.8
Q ss_pred cceeeeeeecccCCCCCCceEEeeHHHHHhcCCCcccccCCCeEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhh
Q 021945 159 PVEFLFEKVLTPSDVGKLNRMVIPKQQAEKHFALSSEIASKGLLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKE 238 (305)
Q Consensus 159 ~~~~lF~K~Lt~SDv~~~~rL~iPk~~ae~~fP~~~~~~~~g~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~ 238 (305)
+..+.|.|+|++|||.+.++|.||++++++|||... ..|.+.|. |+.|.++|+|++. ++.|++||..||++
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 345699999999999987899999999999998754 46778887 5999999999864 69999999999999
Q ss_pred cCCCCCCEEEEEecccCCCCeEEEEEEe
Q 021945 239 KGVKAGDTVSFWRSNVGSNSKLFIDCKL 266 (305)
Q Consensus 239 k~Lk~GD~I~F~~~~~~~~~~l~i~~r~ 266 (305)
|+|++||+|+|--..+ .+-.|.|.+-+
T Consensus 115 n~L~~GD~cvFeli~~-~~~~f~V~IfR 141 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRT-RDFVLKVTAFR 141 (146)
T ss_dssp TTCCTTCEEEEEECSS-SSCEEEEEEEC
T ss_pred cCCCCCCEEEEEEecC-CceEEEEEEEe
Confidence 9999999999988761 22245454433
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.60 E-value=3.8e-15 Score=118.97 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=74.7
Q ss_pred eeeeeeecccCCCCCCceEEeeHHHHHhcCCCcccccCCCeEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhhcC
Q 021945 161 EFLFEKVLTPSDVGKLNRMVIPKQQAEKHFALSSEIASKGLLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKG 240 (305)
Q Consensus 161 ~~lF~K~Lt~SDv~~~~rL~iPk~~ae~~fP~~~~~~~~g~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~ 240 (305)
.+.|.|+|+++|. ..+|.||+.+++.|.+.. +..+.++|..|+.|.++++++. .+++|++||..||++++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 4589999999984 459999999998865433 2478899999999999998773 47899999999999999
Q ss_pred CCCCCEEEEEecccCCCCeEEEEE
Q 021945 241 VKAGDTVSFWRSNVGSNSKLFIDC 264 (305)
Q Consensus 241 Lk~GD~I~F~~~~~~~~~~l~i~~ 264 (305)
|++||.|+|.-.. +..+.|.+
T Consensus 78 L~~GD~lvF~~~~---~~~f~V~I 98 (104)
T 1yel_A 78 LEDGKYLQFIYDR---DRTFYVII 98 (104)
T ss_dssp CCTTCEEEEEECS---SSEEEEEE
T ss_pred CCCCCEEEEEEcC---CCeEEEEE
Confidence 9999999998865 45554433
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.65 E-value=0.037 Score=53.29 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred ceeeeeeecccCCCC----CCceEEeeHHHHHhcCCCcccc--cCCC--eEEEEEeCCCCEEEEEEEEeC------CCCc
Q 021945 160 VEFLFEKVLTPSDVG----KLNRMVIPKQQAEKHFALSSEI--ASKG--LLLNFEDSTQKVWRLRYCYWS------SSQS 225 (305)
Q Consensus 160 ~~~lF~K~Lt~SDv~----~~~rL~iPk~~ae~~fP~~~~~--~~~g--~~l~v~D~~Gk~W~fr~~~~~------~~~~ 225 (305)
-..+|.|.|++.|++ |+..+.||+..+..+||.+... .... ..+.+-|.+.-.+.++++|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 356999999999998 6779999998899999887722 1222 333344444455599998885 4467
Q ss_pred eEEeCCcc-hhhhhcCCCCCCEEEEEec
Q 021945 226 YVLTKGWS-RFVKEKGVKAGDTVSFWRS 252 (305)
Q Consensus 226 yvLt~GW~-~FV~~k~Lk~GD~I~F~~~ 252 (305)
|-|+. |. .+.-.+...+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 99995 55 4555688899999999765
No 6
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.36 E-value=0.036 Score=41.21 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCCceEEeEECC-CCeEEEEEEeCCeEE
Q 021945 28 LPSSKYKGVVPQP-NGRWGAQIYEKHQRV 55 (305)
Q Consensus 28 ~~~s~yrGV~~~~-~grw~A~I~~~~k~v 55 (305)
..+|+|+||+|.+ .+.|.|+-.+++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 4679999999987 699999999988754
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=91.42 E-value=0.0016 Score=55.73 Aligned_cols=54 Identities=9% Similarity=-0.163 Sum_probs=36.7
Q ss_pred CCcCCcccCCCCCCCCceEEeEECCCCeEEEEEEeCCeEEeecCCCCHHHHHHHHH
Q 021945 16 LSENGIDAESKKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFIEEEEAARVYD 71 (305)
Q Consensus 16 ~~~n~~n~~~~~~~~s~yrGV~~~~~grw~A~I~~~~k~v~LG~f~t~EeAA~AYD 71 (305)
.+||..|+.....+.+ .+||.+.+.++|.+.|..+ +..+||.|++.+|||++|.
T Consensus 93 ~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 93 QKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred HHHHhhcccccCcccc-eeeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 3455555543332222 4577552245688999988 7788999999999999964
No 8
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=74.75 E-value=2.6 Score=30.45 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=32.0
Q ss_pred CceEEeCCcchhhhhcCCCCCCEEEEEecccCCCCeEEEEEEec
Q 021945 224 QSYVLTKGWSRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKLQ 267 (305)
Q Consensus 224 ~~yvLt~GW~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~~ 267 (305)
..|.|+= =.++++.-++++||++.+.-+. .+|++.++|+|=
T Consensus 23 etyYInI-PaeI~kaLgIk~gD~fel~ve~--kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLI-PKDIAEALDIKPDDTFILNMEQ--KDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEE-CHHHHHHTTCCTTCCEEEEEEE--ETTEEEEEEEEC
T ss_pred eEEEEeC-cHHHHHHhCCCCCCEEEEEEec--CCCeEEEEehhh
Confidence 3455541 2599999999999999987764 589999999874
No 9
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=56.20 E-value=9.2 Score=34.23 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=31.5
Q ss_pred EeEECCCCeEEEEEEeCCeEEeecCCCCHHHHHHHHHHHHHhc
Q 021945 35 GVVPQPNGRWGAQIYEKHQRVWLGTFIEEEEAARVYDTAALRF 77 (305)
Q Consensus 35 GV~~~~~grw~A~I~~~~k~v~LG~f~t~EeAA~AYD~Aa~~~ 77 (305)
||+.++.|.|..+...+|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778899988777899999996 8888877766554444
No 10
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=50.32 E-value=15 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.0
Q ss_pred hhcCCCCCCEEEEEecc
Q 021945 237 KEKGVKAGDTVSFWRSN 253 (305)
Q Consensus 237 ~~k~Lk~GD~I~F~~~~ 253 (305)
..+.|+.||.|.|.|++
T Consensus 25 ~~~~L~~Ge~l~L~rEp 41 (109)
T 3k2y_A 25 TLTTLRVGMAVLLQRES 41 (109)
T ss_dssp HTTSCCTTCEEEEEECT
T ss_pred hhhcCCCCCEEEEEECC
Confidence 34689999999999998
No 11
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=45.54 E-value=66 Score=23.83 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=30.0
Q ss_pred eEECCCC--eEEEEEEeCCe--EEeecCCC--CHHHHHHHHHHHHHhc
Q 021945 36 VVPQPNG--RWGAQIYEKHQ--RVWLGTFI--EEEEAARVYDTAALRF 77 (305)
Q Consensus 36 V~~~~~g--rw~A~I~~~~k--~v~LG~f~--t~EeAA~AYD~Aa~~~ 77 (305)
+...++| .|.-+.+.+|+ ++-||.|. |.+||....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455544 58888887775 57899997 5888887777666554
No 12
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=42.72 E-value=35 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred eEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhhcCCCCCCEEEEEecc-cCCCCeEEEEE
Q 021945 201 LLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSN-VGSNSKLFIDC 264 (305)
Q Consensus 201 ~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~Lk~GD~I~F~~~~-~~~~~~l~i~~ 264 (305)
..+.+-|.+| ..+++.|... |++||+|.+.... +.-.|.+.+.+
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v 84 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSV 84 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEE
Confidence 5788889888 4888888543 9999999996322 12245544444
No 13
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=38.10 E-value=39 Score=24.95 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=24.4
Q ss_pred chhhhhcCCCCCCEEEEEecccCCCCeEEEEEEe
Q 021945 233 SRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKL 266 (305)
Q Consensus 233 ~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~ 266 (305)
...++.-+++.||+|.+.|.. ...|+ ++-||.
T Consensus 43 DPvar~~G~k~GdVvkI~R~S-~taG~-~v~YR~ 74 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKS-PTAEE-FVTYRL 74 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEE-TTTEE-EEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECC-CCCCC-cEEEEE
Confidence 478899999999999999976 33444 466663
No 14
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=35.95 E-value=43 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=23.4
Q ss_pred chhhhhcCCCCCCEEEEEecccCCCCeEEEEEEe
Q 021945 233 SRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKL 266 (305)
Q Consensus 233 ~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~ 266 (305)
...++.-+|+.||+|.+.|.. ...|+ ++-||.
T Consensus 49 DPva~~~g~k~GdVvkI~R~S-~tag~-~~~YR~ 80 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKS-QLYGE-VVSYRY 80 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEE-TTTEE-EEEEEE
T ss_pred CHhHHhhCCCCCCEEEEEEcC-CCCCc-cEEEEE
Confidence 367888999999999999976 23333 456654
No 15
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=34.66 E-value=51 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=32.2
Q ss_pred CCeEEEEEeCCCCEEEEEEEEe---------CCCCceEEe--CCcchhhhhcCCCCCCEEEE
Q 021945 199 KGLLLNFEDSTQKVWRLRYCYW---------SSSQSYVLT--KGWSRFVKEKGVKAGDTVSF 249 (305)
Q Consensus 199 ~g~~l~v~D~~Gk~W~fr~~~~---------~~~~~yvLt--~GW~~FV~~k~Lk~GD~I~F 249 (305)
-.+.|.+.|.+|++=...-... ...-.|+|. .| .+.+.++++||.|.|
T Consensus 82 ~PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG---~~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 82 IPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGG---LAARLGIKPGDKVEW 140 (140)
T ss_dssp SCEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETT---HHHHHTCCTTCEEEC
T ss_pred cceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcC---hHHHcCCCCCCEEeC
Confidence 3477888888887766642111 112368887 55 568899999999864
No 16
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=34.18 E-value=21 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=18.1
Q ss_pred CCcceeEEEeeeEeecCCCccc
Q 021945 282 VPNIGVVRLFGVNILEDPNNLC 303 (305)
Q Consensus 282 ~~~~~~vrlFG~~i~~~~~~~~ 303 (305)
.....+||+||..+.|+|..-|
T Consensus 20 ~s~p~kVR~L~QVisYd~~sa~ 41 (123)
T 3kf8_B 20 ISNPERLRILAQVKDFIPHEST 41 (123)
T ss_dssp TTBCEEEEEEEEEEEEEGGGTE
T ss_pred ccCCceEEEEEEEEEEcCCCcE
Confidence 3366899999999999998654
No 17
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=33.76 E-value=43 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=23.5
Q ss_pred chhhhhcCCCCCCEEEEEecccCCCCeEEEEEEe
Q 021945 233 SRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKL 266 (305)
Q Consensus 233 ~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~ 266 (305)
...++.-+|+.||+|.+.|... ..|+ ++-||.
T Consensus 41 DPvar~~G~k~GdVvkI~R~S~-taG~-~v~YR~ 72 (78)
T 1hmj_A 41 DPVIQEIGAKEGDVVRVIRKSP-TAGV-SIAYRL 72 (78)
T ss_pred CHhhHHhCCCCCCEEEEEECCC-CCCC-cEEEEE
Confidence 4788999999999999999873 3333 355553
No 18
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=32.56 E-value=2.1e+02 Score=23.47 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=51.9
Q ss_pred eeeeecccCCCCCCceEEeeHHHHHh--cCCCcccccCCCeEEEEEeC-CCCEEEEEEEEeCCC--CceEEeCCcchhhh
Q 021945 163 LFEKVLTPSDVGKLNRMVIPKQQAEK--HFALSSEIASKGLLLNFEDS-TQKVWRLRYCYWSSS--QSYVLTKGWSRFVK 237 (305)
Q Consensus 163 lF~K~Lt~SDv~~~~rL~iPk~~ae~--~fP~~~~~~~~g~~l~v~D~-~Gk~W~fr~~~~~~~--~~yvLt~GW~~FV~ 237 (305)
|-.-+.|..|+..-+.+.|..+++++ ++|. -.|.++|. +|..+.- |.+.+.. ..--|.+ .-
T Consensus 27 IHRatVT~AdL~Y~GSITID~dLldaAgIl~~--------EkV~IvNvnNG~RfeT-YvI~GerGSG~I~lNG-----AA 92 (143)
T 1pqh_A 27 LHRVKVTHADLHYEGTCAIDQDFLDAAGILEN--------EAIDIWNVTNGKRFST-YAIAAERGSRIISVNG-----AA 92 (143)
T ss_dssp EEEEECCBCCSSSCCCEEEEHHHHHHHTCCTT--------CEEEEEETTTCCEEEE-EEEEECTTCCCEECCG-----GG
T ss_pred hcceEEeccccccceeEEECHHHHHHcCCCCC--------CEEEEEECCCCceEEE-EEEEccCCCceEEech-----HH
Confidence 44567899999988999999999986 3333 45888886 6775542 3344333 3233333 56
Q ss_pred hcCCCCCCEEEEEe
Q 021945 238 EKGVKAGDTVSFWR 251 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~ 251 (305)
++..++||.|++.-
T Consensus 93 Arl~~~GD~VII~s 106 (143)
T 1pqh_A 93 AHCASVGDIVIIAS 106 (143)
T ss_dssp GGTCCTTCEEEEEE
T ss_pred HccCCCCCEEEEEE
Confidence 78889999999854
No 19
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=31.76 E-value=1.6e+02 Score=21.98 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.3
Q ss_pred hhhhhcCCCCCCEEEEEecc
Q 021945 234 RFVKEKGVKAGDTVSFWRSN 253 (305)
Q Consensus 234 ~FV~~k~Lk~GD~I~F~~~~ 253 (305)
.+-+.-+|++||.+.|..+.
T Consensus 67 eiR~~lgi~~Gd~l~~~~~~ 86 (92)
T 2glw_A 67 ALRDVIGIKPGEVIEVLLLG 86 (92)
T ss_dssp HHHHHHTCCTTCEEEEEEEE
T ss_pred HHHHHcCCCCCCEEEEEEeC
Confidence 67788899999999998765
No 20
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=31.51 E-value=32 Score=23.83 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.8
Q ss_pred CCCCCCceEEeeHHHHHh
Q 021945 171 SDVGKLNRMVIPKQQAEK 188 (305)
Q Consensus 171 SDv~~~~rL~iPk~~ae~ 188 (305)
.-|+..++++||++..+.
T Consensus 16 ~kv~~kGqItIPkeiR~~ 33 (59)
T 1yfb_A 16 RKVDELGRVVIPIELRRT 33 (59)
T ss_dssp EECCTTCEEECCHHHHHH
T ss_pred EEECCCCEEEeCHHHHHH
Confidence 345667899999999988
No 21
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.07 E-value=46 Score=24.32 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.7
Q ss_pred hcCCCCCCEEEEEecc
Q 021945 238 EKGVKAGDTVSFWRSN 253 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~~~ 253 (305)
-.+|++||.|.|.-..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4689999999998776
No 22
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.76 E-value=32 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=19.8
Q ss_pred hcCCCCCCEEEEEecccCCCCeEEEEEE
Q 021945 238 EKGVKAGDTVSFWRSNVGSNSKLFIDCK 265 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~~~~~~~~~l~i~~r 265 (305)
-..|++||+|.|+.+. +|+|++.+-
T Consensus 115 l~~l~~Gd~ig~~~~~---~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTV---AGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECT---TSCEEEEES
T ss_pred ccccCCCCEEEEEEcC---CcEEEEEEC
Confidence 3467899999999976 788877753
No 23
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=30.65 E-value=67 Score=23.96 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhhcCCCCCCEEEE
Q 021945 201 LLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSF 249 (305)
Q Consensus 201 ~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~Lk~GD~I~F 249 (305)
..+.+.|..| ..+++. |.+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tl------------W~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTL------------WNELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEE------------EGGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEE------------ECCcccc-ccCCCCEEEE
Confidence 5678888888 466555 4555544 8999999999
No 24
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=30.60 E-value=70 Score=25.24 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=30.2
Q ss_pred eEEEEEEeCCeEEeecCCCCHHHHHHHHHHHHHhcc
Q 021945 43 RWGAQIYEKHQRVWLGTFIEEEEAARVYDTAALRFR 78 (305)
Q Consensus 43 rw~A~I~~~~k~v~LG~f~t~EeAA~AYD~Aa~~~~ 78 (305)
-|.|.|.....-+-++...+++.|..|..+|+.+|=
T Consensus 79 ~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 399999877777777777889999999999998863
No 25
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=30.56 E-value=37 Score=29.48 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred chhhhhcCCCCCCEEEEEecccCCCCeEEEEEEec
Q 021945 233 SRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKLQ 267 (305)
Q Consensus 233 ~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~~ 267 (305)
..+.++..|++||+|.|.|.+ +.|.|.|.+...
T Consensus 130 ~~~F~~~~~~~G~~I~~~~~p--~~G~L~i~~s~~ 162 (208)
T 4dok_A 130 VGFFQSKYFKANSVITYHFSA--KDGICEIGFETE 162 (208)
T ss_dssp HHHHHTCEECTTCEEEEEECS--SSCCEEEEEECT
T ss_pred HHHhccCCCCCCCEEEEEEeC--CCCeEEEEEEeC
Confidence 456677789999999999987 348888888765
No 26
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.05 E-value=46 Score=24.80 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.6
Q ss_pred hcCCCCCCEEEEEecc
Q 021945 238 EKGVKAGDTVSFWRSN 253 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~~~ 253 (305)
-.+|++||.|.|.-..
T Consensus 59 l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4679999999998876
No 27
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.79 E-value=31 Score=24.42 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.0
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 021945 53 QRVWLGTFIEEEEAARVYDTAAL 75 (305)
Q Consensus 53 k~v~LG~f~t~EeAA~AYD~Aa~ 75 (305)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 48999999999999988766544
No 28
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=29.42 E-value=1.2e+02 Score=24.46 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=31.8
Q ss_pred CeEEEEEeCCCCEEEEEEEEe---------CCCCceEEe--CCcchhhhhcCCCCCCEEEE
Q 021945 200 GLLLNFEDSTQKVWRLRYCYW---------SSSQSYVLT--KGWSRFVKEKGVKAGDTVSF 249 (305)
Q Consensus 200 g~~l~v~D~~Gk~W~fr~~~~---------~~~~~yvLt--~GW~~FV~~k~Lk~GD~I~F 249 (305)
.+.|.+.|.+|++-....... ...-.|+|. .| .+.+.++++||.|.+
T Consensus 69 PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG---~~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 69 PLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAG---TVKRLGVSPGDRLEG 126 (136)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETT---HHHHHTCCTTCEEEE
T ss_pred ceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcC---hHHhcCCCCCCEEEE
Confidence 467777887777666532221 122458887 55 458899999999976
No 29
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=29.08 E-value=1.3e+02 Score=23.09 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=30.8
Q ss_pred eEECCCC--eEEEEEEeCCe--EEeecCCC--CHHHHHHHHHHHHHhc-cCCC
Q 021945 36 VVPQPNG--RWGAQIYEKHQ--RVWLGTFI--EEEEAARVYDTAALRF-RGQN 81 (305)
Q Consensus 36 V~~~~~g--rw~A~I~~~~k--~v~LG~f~--t~EeAA~AYD~Aa~~~-~G~~ 81 (305)
+...++| .|.-+.+.+|+ ++-||.|. |.++|-...+.+...+ .|.+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 4455654 59888888776 57899997 5788877666655544 3444
No 30
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=29.05 E-value=92 Score=22.81 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=18.6
Q ss_pred hcCCCCCCEEEEEecccCCCCeE-EEEEEe
Q 021945 238 EKGVKAGDTVSFWRSNVGSNSKL-FIDCKL 266 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~~~~~~~~~l-~i~~r~ 266 (305)
-.+|++||.|.|.-... ++|.+ ...++.
T Consensus 45 l~~lk~Gd~V~F~~~~~-~~g~~~it~i~~ 73 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLD-PHGMATLVTVAP 73 (82)
T ss_dssp CSSCSTTCEEEEEEEEE-TTTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEC-CCCeEEEEEEEe
Confidence 56899999999988763 34343 334443
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.06 E-value=1.9e+02 Score=21.63 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhhcCCCCCCEEEEEecc
Q 021945 201 LLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSN 253 (305)
Q Consensus 201 ~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~Lk~GD~I~F~~~~ 253 (305)
..+.+.|..| ..++++|+... | ....|++||+|.|.-..
T Consensus 45 ~~~~l~D~TG---~I~~t~w~~~~-------~----~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 45 ANVIIADDTG---ELRAVFWTENI-------K----LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp EEEEEEETTE---EEEEEEETTGG-------G----GGGTCCTTSEEEEEEEE
T ss_pred EEEEEEeCCC---eEEEEEeCchh-------h----hhhcCCCCCEEEEEeeE
Confidence 6789999988 68888986531 2 12579999999996654
No 32
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=26.65 E-value=43 Score=29.90 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=25.6
Q ss_pred chhhhhcCCCCCCEEEEEecccCCCCeEEEEEEec
Q 021945 233 SRFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKLQ 267 (305)
Q Consensus 233 ~~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~~ 267 (305)
..|.++..|+.||+|.|.|.+ ++.|.|.+...
T Consensus 147 ~~~F~~~~l~kGs~I~~~~~p---~g~l~i~~s~~ 178 (246)
T 4doi_A 147 LEIFKEETFPPGSSILFALSP---TGSLTVAFSKD 178 (246)
T ss_dssp HHHHTTCEECTTCEEEEEECT---TSEEEEEEESS
T ss_pred HHHhccCcCCCCCEEEEEEeC---CCcEEEEEecC
Confidence 355567789999999999986 68888888655
No 33
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.41 E-value=37 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.0
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 021945 53 QRVWLGTFIEEEEAARVYDTAAL 75 (305)
Q Consensus 53 k~v~LG~f~t~EeAA~AYD~Aa~ 75 (305)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 48999999999999988766554
No 34
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=23.97 E-value=2.9e+02 Score=22.44 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=53.2
Q ss_pred eeeeecccCCCCCCceEEeeHHHHHh--cCCCcccccCCCeEEEEEeC-CCCEEEEEEEEeC--CCCceEEeCCcchhhh
Q 021945 163 LFEKVLTPSDVGKLNRMVIPKQQAEK--HFALSSEIASKGLLLNFEDS-TQKVWRLRYCYWS--SSQSYVLTKGWSRFVK 237 (305)
Q Consensus 163 lF~K~Lt~SDv~~~~rL~iPk~~ae~--~fP~~~~~~~~g~~l~v~D~-~Gk~W~fr~~~~~--~~~~yvLt~GW~~FV~ 237 (305)
|-.-+.|..|+...+.+.|..+++++ ++|. -.|.++|. +|..|.- |.+.. .|..--|.+ .-
T Consensus 10 IHRatVT~AdL~Y~GSITID~dLldaAgIl~~--------EkV~IvNvnNG~RfeT-YvI~GerGSG~I~lNG-----AA 75 (139)
T 2c45_A 10 IHRATVTCADLHYVGSVTIDADLMDAADLLEG--------EQVTIVDIDNGARLVT-YAITGERGSGVIGING-----AA 75 (139)
T ss_dssp EEEEECCCEESSSCCEEEEEHHHHHHTTCCSS--------CCEEEEETTTCCEEEE-CEEEECTTTTCEEEES-----ST
T ss_pred ccceEEeccccccceeeEECHHHHHHcCCCCC--------CEEEEEECCCCceEEE-EEEEccCCCCEEEEch-----HH
Confidence 66778999999988999999999986 3332 44788886 6775542 33443 334455554 46
Q ss_pred hcCCCCCCEEEEEe
Q 021945 238 EKGVKAGDTVSFWR 251 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~ 251 (305)
++..++||.|++.-
T Consensus 76 Arl~~~GD~vII~a 89 (139)
T 2c45_A 76 AHLVHPGDLVILIA 89 (139)
T ss_dssp TTTSCTTCEEEEEE
T ss_pred HccCCCCCEEEEEE
Confidence 77889999999854
No 35
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=23.91 E-value=35 Score=25.79 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.5
Q ss_pred hhhhcCCCCCCEEEEEecc
Q 021945 235 FVKEKGVKAGDTVSFWRSN 253 (305)
Q Consensus 235 FV~~k~Lk~GD~I~F~~~~ 253 (305)
....+..++||+|+|-...
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 4678899999999998865
No 36
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=23.77 E-value=1.1e+02 Score=24.86 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCCceEEeCCcchhh----------hhcCCCCCCEEEEEec
Q 021945 221 SSSQSYVLTKGWSRFV----------KEKGVKAGDTVSFWRS 252 (305)
Q Consensus 221 ~~~~~yvLt~GW~~FV----------~~k~Lk~GD~I~F~~~ 252 (305)
-.-.-||..+||+-|- .=+.|++||+|+-.--
T Consensus 86 ~ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClslt~ 127 (133)
T 1oa8_A 86 VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTL 127 (133)
T ss_dssp TTCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEEEE
T ss_pred CCCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEecch
Confidence 3456688889998553 3467999999986543
No 37
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=23.68 E-value=1.3e+02 Score=22.77 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCEEEEEEEEeCCCCceEEeCCcchhhhhcCCCCCCEEEEEec
Q 021945 201 LLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRS 252 (305)
Q Consensus 201 ~~l~v~D~~Gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~Lk~GD~I~F~~~ 252 (305)
..+.+.|..| .++++.| .+.+.. .|++||+|.| ..
T Consensus 43 ~~~~l~D~TG---~IrvtlW------------~~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 43 KSFIVRDETG---SIRVTLW------------DNLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEETTE---EEEEEEE------------GGGGGS-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEE------------Cccccc-ccCCCCEEEE-EE
Confidence 4677888777 3666655 443333 8999999999 54
No 38
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=23.09 E-value=2.8e+02 Score=21.84 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=52.0
Q ss_pred eeeeecccCCCCCCceEEeeHHHHHh--cCCCcccccCCCeEEEEEeC-CCCEEEEEEEEeC--CCCceEEeCCcchhhh
Q 021945 163 LFEKVLTPSDVGKLNRMVIPKQQAEK--HFALSSEIASKGLLLNFEDS-TQKVWRLRYCYWS--SSQSYVLTKGWSRFVK 237 (305)
Q Consensus 163 lF~K~Lt~SDv~~~~rL~iPk~~ae~--~fP~~~~~~~~g~~l~v~D~-~Gk~W~fr~~~~~--~~~~yvLt~GW~~FV~ 237 (305)
|-.-+.|..|+...+.+.|..+++++ ++| +-.|.+++. +|..|.- |.+.+ .+..--|.+ .-
T Consensus 13 IHratVT~a~L~Y~GSitID~~Ll~aA~i~~--------~E~V~I~NvnNG~Rf~T-YvI~GerGSg~I~lNG-----AA 78 (114)
T 3oug_A 13 ISYATVTGKDLFYVGSITIDSEIMKQANIIE--------NEKVQVVNLNNGERLET-YVIKGEPNSKTIALNG-----PA 78 (114)
T ss_dssp EEEEECCEEESSCC-CEEEEHHHHHHTTCCT--------TBEEEEEETTTCCEEEE-EEEEECTTSCCEEEEG-----GG
T ss_pred hcceEEecccccccceEEECHHHHHHcCCCc--------CCEEEEEECCCCceEEE-EEEEccCCCCEEEeCC-----HH
Confidence 55668899999988999999999986 333 345888896 6876643 33443 333344544 46
Q ss_pred hcCCCCCCEEEEEe
Q 021945 238 EKGVKAGDTVSFWR 251 (305)
Q Consensus 238 ~k~Lk~GD~I~F~~ 251 (305)
++..++||.|++.-
T Consensus 79 Ar~~~~GD~vII~a 92 (114)
T 3oug_A 79 ARRCEIGDQLFIIS 92 (114)
T ss_dssp GGGCCTTCEEEEEE
T ss_pred HhccCCCCEEEEEE
Confidence 77889999999854
No 39
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=23.07 E-value=58 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=25.0
Q ss_pred hhhhhcCCCCCCEEEEEecccCCCCeEEEEEEec
Q 021945 234 RFVKEKGVKAGDTVSFWRSNVGSNSKLFIDCKLQ 267 (305)
Q Consensus 234 ~FV~~k~Lk~GD~I~F~~~~~~~~~~l~i~~r~~ 267 (305)
.+.+++.+++||+|.|.|.+ ++.|.|.+...
T Consensus 137 ~~F~~~~~~kG~~i~~~~~p---~g~l~is~~~~ 167 (222)
T 1eyq_A 137 EAFKPVNFPPGASVFYRQSP---DGILGLSFSPD 167 (222)
T ss_dssp HHHTTCEECTTCEEEEEEET---TTEEEEEEESS
T ss_pred HHhCCCCCCCCCEEEEEEcC---CCceEEEEEeC
Confidence 45566679999999999976 68888887666
No 40
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=20.91 E-value=80 Score=25.65 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.1
Q ss_pred CCcchhhhhcCCCCCCEEEEE
Q 021945 230 KGWSRFVKEKGVKAGDTVSFW 250 (305)
Q Consensus 230 ~GW~~FV~~k~Lk~GD~I~F~ 250 (305)
.+..+|.+ ..++||.++||
T Consensus 29 ~~arn~lr--~Mk~GD~~~fY 47 (147)
T 2p5d_A 29 ERYKNTIN--KVKVGDKLIIY 47 (147)
T ss_dssp GGGHHHHT--TCCTTCEEEEE
T ss_pred HHHHHHHH--hCCCCCEEEEE
Confidence 34568887 79999999999
No 41
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=20.19 E-value=1e+02 Score=22.15 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=21.2
Q ss_pred CCceEEeEECCCCeEEEEEEeC-CeEEe
Q 021945 30 SSKYKGVVPQPNGRWGAQIYEK-HQRVW 56 (305)
Q Consensus 30 ~s~yrGV~~~~~grw~A~I~~~-~k~v~ 56 (305)
..-+.|+++++.|+|+...... |++.+
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcCCCCEEE
Confidence 4557799999999999998875 66543
Done!