BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021948
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
           D179n
          Length = 357

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 181 AAMRLHFLASEHRRPDQFTVLVRNVPPDPDESVTQLVEHF 220
            A RL FLA    RP++    V  + P+P +SVT++++ F
Sbjct: 119 GAPRLEFLAG---RPNKTIAAVDGLIPEPQDSVTKILQRF 155


>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
          Length = 357

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 181 AAMRLHFLASEHRRPDQFTVLVRNVPPDPDESVTQLVEHF 220
            A RL FLA    RP++    V  + P+P +SVT++++ F
Sbjct: 119 GAPRLEFLAG---RPNKTIAAVDGLIPEPQDSVTKILQRF 155


>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
 pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
 pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
 pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
 pdb|1MNP|A Chain A, Manganese Peroxidase
 pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
 pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
          Length = 357

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 181 AAMRLHFLASEHRRPDQFTVLVRNVPPDPDESVTQLVEHF 220
            A RL FLA    RP++    V  + P+P +SVT++++ F
Sbjct: 119 GAPRLEFLAG---RPNKTIAAVDGLIPEPQDSVTKILQRF 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,794,381
Number of Sequences: 62578
Number of extensions: 355124
Number of successful extensions: 580
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 4
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)