Query 021948
Match_columns 305
No_of_seqs 148 out of 808
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkz_A RNA-binding protein 5; 91.7 0.2 6.8E-06 37.0 4.5 41 194-237 6-46 (95)
2 3bs9_A Nucleolysin TIA-1 isofo 91.0 0.3 1E-05 34.5 4.7 38 195-237 4-41 (87)
3 2cpd_A Apobec-1 stimulating pr 90.9 0.33 1.1E-05 35.4 5.0 43 194-239 12-54 (99)
4 2ywk_A Putative RNA-binding pr 90.8 0.34 1.1E-05 34.9 4.9 40 194-238 13-52 (95)
5 3s7r_A Heterogeneous nuclear r 90.8 0.35 1.2E-05 34.3 4.9 39 194-237 8-46 (87)
6 2cq3_A RNA-binding protein 9; 90.6 0.48 1.6E-05 34.8 5.7 41 194-239 12-52 (103)
7 2dnz_A Probable RNA-binding pr 90.6 0.37 1.3E-05 34.7 5.0 39 195-238 3-41 (95)
8 1wi8_A EIF-4B, eukaryotic tran 90.4 0.39 1.3E-05 35.4 5.0 39 194-238 12-50 (104)
9 2dng_A Eukaryotic translation 90.3 0.52 1.8E-05 34.6 5.7 39 194-238 12-50 (103)
10 3mdf_A Peptidyl-prolyl CIS-tra 90.3 0.28 9.7E-06 34.5 4.0 39 194-237 4-42 (85)
11 1s79_A Lupus LA protein; RRM, 90.3 0.3 1E-05 36.5 4.2 41 194-239 8-48 (103)
12 2e5h_A Zinc finger CCHC-type a 90.2 0.33 1.1E-05 34.9 4.3 39 194-237 13-51 (94)
13 3s8s_A Histone-lysine N-methyl 90.1 0.39 1.3E-05 36.2 4.8 40 195-239 4-43 (110)
14 2dgs_A DAZ-associated protein 90.0 0.44 1.5E-05 34.7 5.0 39 194-237 7-45 (99)
15 2dnh_A Bruno-like 5, RNA bindi 89.9 0.53 1.8E-05 34.6 5.4 40 194-238 12-51 (105)
16 1x4e_A RNA binding motif, sing 89.8 0.47 1.6E-05 33.4 4.9 38 195-237 3-40 (85)
17 2lxi_A RNA-binding protein 10; 89.8 0.12 4E-06 37.6 1.6 37 197-237 1-37 (91)
18 3md1_A Nuclear and cytoplasmic 89.6 0.49 1.7E-05 33.0 4.8 35 198-237 2-36 (83)
19 3ucg_A Polyadenylate-binding p 89.5 0.35 1.2E-05 34.3 4.0 38 196-238 5-42 (89)
20 2dgw_A Probable RNA-binding pr 89.5 0.55 1.9E-05 33.6 5.1 38 194-237 7-44 (91)
21 2dgt_A RNA-binding protein 30; 89.5 0.48 1.6E-05 34.0 4.7 42 193-239 6-47 (92)
22 2cpz_A CUG triplet repeat RNA- 89.5 0.43 1.5E-05 35.8 4.7 40 194-238 22-61 (115)
23 2do4_A Squamous cell carcinoma 89.4 0.52 1.8E-05 34.3 4.9 40 194-238 14-53 (100)
24 4a8x_A RNA-binding protein wit 89.3 0.35 1.2E-05 34.2 3.9 39 195-238 2-40 (88)
25 2cqc_A Arginine/serine-rich sp 89.3 0.47 1.6E-05 34.1 4.6 39 194-237 12-50 (95)
26 2dnm_A SRP46 splicing factor; 89.2 0.52 1.8E-05 34.6 4.8 39 194-237 10-48 (103)
27 1wf0_A TDP-43, TAR DNA-binding 89.2 0.41 1.4E-05 34.1 4.1 38 195-237 3-40 (88)
28 2khc_A Testis-specific RNP-typ 89.1 0.58 2E-05 35.2 5.2 39 194-237 37-75 (118)
29 1p27_B RNA-binding protein 8A; 89.1 0.63 2.1E-05 34.2 5.3 39 194-237 20-58 (106)
30 2jrs_A RNA-binding protein 39; 89.0 0.64 2.2E-05 34.7 5.3 39 194-237 23-61 (108)
31 4f25_A Polyadenylate-binding p 88.9 0.45 1.5E-05 36.0 4.4 37 197-238 5-41 (115)
32 2ytc_A PRE-mRNA-splicing facto 88.8 0.6 2.1E-05 32.8 4.8 39 194-237 9-47 (85)
33 2cpf_A RNA binding motif prote 88.8 0.44 1.5E-05 34.6 4.1 39 195-238 3-41 (98)
34 4fxv_A ELAV-like protein 1; RN 88.8 0.48 1.7E-05 34.9 4.4 38 196-238 18-55 (99)
35 2cq0_A Eukaryotic translation 88.8 0.78 2.7E-05 33.5 5.6 39 194-237 12-50 (103)
36 3ulh_A THO complex subunit 4; 88.7 0.64 2.2E-05 34.3 5.1 39 194-237 26-64 (107)
37 2dgo_A Cytotoxic granule-assoc 88.7 0.74 2.5E-05 34.5 5.5 39 194-237 12-50 (115)
38 2dgv_A HnRNP M, heterogeneous 88.6 0.65 2.2E-05 33.1 4.9 39 194-237 5-43 (92)
39 2cqd_A RNA-binding region cont 88.4 0.52 1.8E-05 35.4 4.4 39 194-237 14-52 (116)
40 2dgx_A KIAA0430 protein; RRM d 88.3 0.56 1.9E-05 34.1 4.5 45 194-240 6-51 (96)
41 2div_A TRNA selenocysteine ass 88.3 0.6 2E-05 33.9 4.6 40 194-238 6-46 (99)
42 2dhg_A TRNA selenocysteine ass 88.2 0.58 2E-05 34.3 4.5 39 194-237 6-45 (104)
43 1oo0_B CG8781-PA, drosophila Y 88.2 0.6 2E-05 34.7 4.6 39 194-237 23-61 (110)
44 2xs2_A Deleted in azoospermia- 88.1 0.55 1.9E-05 34.4 4.3 39 194-237 6-44 (102)
45 2err_A Ataxin-2-binding protei 87.9 0.69 2.4E-05 34.5 4.8 40 194-238 26-65 (109)
46 2dnp_A RNA-binding protein 14; 87.9 0.46 1.6E-05 33.9 3.7 41 194-239 6-46 (90)
47 1x5u_A Splicing factor 3B subu 87.9 0.58 2E-05 34.4 4.4 40 194-238 12-51 (105)
48 2cpy_A RNA-binding protein 12; 87.8 0.57 1.9E-05 35.3 4.3 40 194-238 12-52 (114)
49 1x5s_A Cold-inducible RNA-bind 87.8 0.51 1.7E-05 34.5 4.0 39 194-237 9-47 (102)
50 1whw_A Hypothetical protein ri 87.8 0.56 1.9E-05 34.0 4.2 40 194-238 5-44 (99)
51 2dha_A FLJ20171 protein; RRM d 87.8 0.53 1.8E-05 36.4 4.2 40 195-237 21-62 (123)
52 2cq1_A PTB-like protein L; RRM 87.8 0.95 3.2E-05 33.6 5.5 39 194-237 12-50 (101)
53 1wex_A Hypothetical protein (r 87.7 0.88 3E-05 33.9 5.3 39 194-237 12-50 (104)
54 3d2w_A TAR DNA-binding protein 87.7 0.52 1.8E-05 34.0 3.9 39 194-237 8-46 (89)
55 1sjq_A Polypyrimidine tract-bi 87.7 0.54 1.9E-05 35.5 4.1 39 194-237 13-51 (105)
56 2d9p_A Polyadenylate-binding p 87.7 0.85 2.9E-05 33.4 5.1 39 194-237 12-50 (103)
57 2cqg_A TDP-43, TAR DNA-binding 87.6 0.77 2.6E-05 33.6 4.9 38 195-237 13-50 (103)
58 2do0_A HnRNP M, heterogeneous 87.6 0.76 2.6E-05 34.3 4.9 39 194-237 12-50 (114)
59 2dgp_A Bruno-like 4, RNA bindi 87.4 0.54 1.8E-05 34.6 3.9 39 194-237 10-48 (106)
60 3r27_A HnRNP L, heterogeneous 87.4 0.85 2.9E-05 34.0 5.0 39 193-236 17-55 (100)
61 1uaw_A Mouse-musashi-1; RNP-ty 87.3 0.53 1.8E-05 32.3 3.6 35 198-237 1-35 (77)
62 1x5t_A Splicing factor 3B subu 87.2 0.48 1.6E-05 34.2 3.5 38 195-237 3-41 (96)
63 2cqb_A Peptidyl-prolyl CIS-tra 87.2 0.54 1.8E-05 34.3 3.8 39 194-237 9-47 (102)
64 2cqi_A Nucleolysin TIAR; RNA r 87.2 0.74 2.5E-05 33.7 4.5 39 195-238 13-51 (103)
65 2cpj_A Non-POU domain-containi 87.1 1 3.4E-05 32.7 5.2 39 194-237 12-50 (99)
66 2ad9_A Polypyrimidine tract-bi 87.1 0.8 2.7E-05 35.3 4.8 39 194-237 28-66 (119)
67 1x4c_A Splicing factor, argini 87.0 1 3.6E-05 33.4 5.4 38 195-237 13-50 (108)
68 2cph_A RNA binding motif prote 86.9 0.63 2.2E-05 34.2 4.1 39 194-237 12-50 (107)
69 2x1f_A MRNA 3'-END-processing 86.9 0.58 2E-05 33.9 3.8 36 197-237 2-37 (96)
70 3ex7_B RNA-binding protein 8A; 86.7 0.8 2.7E-05 34.9 4.6 39 194-237 19-57 (126)
71 3nmr_A Cugbp ELAV-like family 86.5 0.74 2.5E-05 36.6 4.6 38 196-238 2-39 (175)
72 1x5o_A RNA binding motif, sing 86.4 1.1 3.9E-05 33.3 5.4 38 195-237 23-60 (114)
73 2dh8_A DAZ-associated protein 86.4 0.68 2.3E-05 34.0 4.0 39 194-237 13-51 (105)
74 1fxl_A Paraneoplastic encephal 86.3 0.73 2.5E-05 36.2 4.4 38 196-238 1-38 (167)
75 1x4h_A RNA-binding protein 28; 86.0 0.73 2.5E-05 34.1 4.0 38 195-237 13-50 (111)
76 3lqv_A PRE-mRNA branch site pr 86.0 0.98 3.4E-05 33.7 4.8 40 195-239 6-45 (115)
77 2rs2_A Musashi-1, RNA-binding 85.9 0.65 2.2E-05 34.7 3.7 39 195-238 23-61 (109)
78 2ku7_A MLL1 PHD3-CYP33 RRM chi 85.7 0.99 3.4E-05 34.8 4.8 39 194-237 60-98 (140)
79 3p5t_L Cleavage and polyadenyl 85.6 0.64 2.2E-05 33.3 3.4 37 198-237 2-38 (90)
80 1x4d_A Matrin 3; structural ge 85.6 1 3.4E-05 33.6 4.5 38 195-237 13-51 (102)
81 1l3k_A Heterogeneous nuclear r 85.6 0.94 3.2E-05 36.8 4.9 40 194-238 10-49 (196)
82 4f02_A Polyadenylate-binding p 85.5 0.83 2.8E-05 38.3 4.5 38 196-238 14-51 (213)
83 2dnq_A RNA-binding protein 4B; 85.4 1.3 4.3E-05 31.5 4.9 40 194-238 5-44 (90)
84 2cq4_A RNA binding motif prote 85.0 0.8 2.7E-05 34.2 3.8 36 197-237 25-60 (114)
85 2fy1_A RNA-binding motif prote 84.9 1.1 3.6E-05 33.9 4.5 39 195-238 5-43 (116)
86 1p1t_A Cleavage stimulation fa 84.6 0.51 1.7E-05 34.6 2.5 37 196-237 7-43 (104)
87 2la6_A RNA-binding protein FUS 84.4 1.6 5.4E-05 31.6 5.1 39 194-237 10-56 (99)
88 1h2v_Z 20 kDa nuclear CAP bind 84.1 1.5 5E-05 34.8 5.2 39 195-238 37-75 (156)
89 1wez_A HnRNP H', FTP-3, hetero 84.0 1.9 6.3E-05 31.8 5.4 39 194-238 12-50 (102)
90 1x4a_A Splicing factor, argini 83.9 1.5 5.1E-05 32.4 4.9 38 195-237 20-57 (109)
91 2dnn_A RNA-binding protein 12; 83.8 0.94 3.2E-05 34.1 3.7 37 196-238 15-51 (109)
92 3md3_A Nuclear and cytoplasmic 83.8 0.76 2.6E-05 36.1 3.4 36 198-238 1-36 (166)
93 2ek1_A RNA-binding protein 12; 83.8 0.79 2.7E-05 32.9 3.2 37 195-236 13-49 (95)
94 1why_A Hypothetical protein ri 83.6 1.1 3.6E-05 32.5 3.9 39 194-237 14-52 (97)
95 1x4b_A Heterogeneous nuclear r 83.5 1.2 4.1E-05 33.3 4.2 36 197-237 27-62 (116)
96 1x4g_A Nucleolysin TIAR; struc 83.4 1.2 4.2E-05 32.9 4.2 39 194-237 22-60 (109)
97 1rk8_A CG8781-PA, CG8781-PA pr 83.3 1.7 5.8E-05 34.9 5.3 39 194-237 69-107 (165)
98 2db1_A Heterogeneous nuclear r 83.2 1.3 4.5E-05 33.5 4.4 42 195-239 15-57 (118)
99 1wg5_A Heterogeneous nuclear r 83.2 1.4 4.9E-05 32.4 4.5 38 195-237 13-51 (104)
100 2kt5_A RNA and export factor-b 83.2 1.5 5.2E-05 33.2 4.8 39 195-238 33-71 (124)
101 2kxn_B Transformer-2 protein h 83.2 1.1 3.6E-05 34.8 3.9 38 195-237 44-81 (129)
102 2j76_E EIF-4B, EIF4B, eukaryot 83.1 0.73 2.5E-05 33.7 2.8 39 194-238 16-54 (100)
103 2diu_A KIAA0430 protein; struc 83.0 1.8 6.1E-05 32.1 4.8 37 195-232 6-44 (96)
104 2cjk_A Nuclear polyadenylated 82.9 0.99 3.4E-05 35.6 3.7 36 197-237 3-38 (167)
105 1b7f_A Protein (SXL-lethal pro 82.8 0.94 3.2E-05 35.8 3.5 37 196-237 2-38 (168)
106 2dgu_A Heterogeneous nuclear r 82.5 1.2 4E-05 32.7 3.7 40 195-239 9-48 (103)
107 2lmi_A GRSF-1, G-rich sequence 82.4 1.3 4.6E-05 32.7 4.1 43 194-239 8-51 (107)
108 1iqt_A AUF1, heterogeneous nuc 82.2 0.53 1.8E-05 32.2 1.6 34 199-237 1-34 (75)
109 1nu4_A U1A RNA binding domain; 82.1 1.5 5.3E-05 31.4 4.2 39 195-235 6-45 (97)
110 3ns6_A Eukaryotic translation 81.8 0.57 2E-05 34.4 1.7 40 197-238 6-48 (100)
111 3beg_B Splicing factor, argini 81.7 0.94 3.2E-05 34.1 3.0 37 196-237 15-51 (115)
112 2ki2_A SS-DNA binding protein 81.5 0.63 2.1E-05 33.1 1.8 36 198-238 2-37 (90)
113 1u6f_A Tcubp1, RNA-binding pro 80.9 1.4 4.7E-05 34.1 3.8 37 196-237 41-77 (139)
114 2jwn_A Embryonic polyadenylate 80.8 1.2 4E-05 33.8 3.3 36 197-237 36-71 (124)
115 2m2b_A RNA-binding protein 10; 80.8 1.4 4.9E-05 33.8 3.9 39 195-238 21-61 (131)
116 2cpe_A RNA-binding protein EWS 80.8 1.8 6.1E-05 32.1 4.3 39 194-237 12-58 (113)
117 1x4f_A Matrin 3; structural ge 80.6 2.1 7E-05 32.6 4.6 37 195-236 23-60 (112)
118 2krb_A Eukaryotic translation 80.3 2 6.7E-05 29.8 4.1 37 198-236 2-41 (81)
119 2hgm_A HNRPF protein, heteroge 80.2 2.2 7.6E-05 33.0 4.7 38 195-238 40-79 (126)
120 2mss_A Protein (musashi1); RNA 80.2 1 3.5E-05 30.7 2.6 34 199-237 1-34 (75)
121 2hgl_A HNRPF protein, heteroge 80.1 1.8 6.2E-05 33.9 4.3 41 195-238 42-83 (136)
122 2a3j_A U1 small nuclear ribonu 79.8 1.9 6.6E-05 33.3 4.3 40 195-236 27-67 (127)
123 3n9u_C Cleavage and polyadenyl 79.7 1.9 6.6E-05 34.5 4.4 39 196-237 54-92 (156)
124 2cqp_A RNA-binding protein 12; 79.4 1.4 4.9E-05 31.7 3.3 27 195-224 13-39 (98)
125 2hvz_A Splicing factor, argini 79.3 1.6 5.5E-05 31.7 3.5 34 199-237 2-35 (101)
126 2lea_A Serine/arginine-rich sp 79.3 1.3 4.5E-05 34.4 3.2 37 196-237 46-82 (135)
127 2nlw_A Eukaryotic translation 79.2 3.1 0.00011 30.5 5.2 39 196-236 14-55 (105)
128 2kvi_A Nuclear polyadenylated 78.8 2.8 9.5E-05 30.1 4.7 38 194-236 7-45 (96)
129 2la4_A Nuclear and cytoplasmic 78.8 2.6 9E-05 30.5 4.6 37 194-235 24-60 (101)
130 2jvo_A Nucleolar protein 3; nu 78.4 2.5 8.5E-05 31.4 4.4 37 194-235 28-64 (108)
131 2voo_A Lupus LA protein; RNA-b 78.3 2.1 7.1E-05 35.6 4.3 37 197-238 109-145 (193)
132 2i2y_A Fusion protein consists 78.2 2.1 7.1E-05 33.6 4.1 39 194-237 70-108 (150)
133 2e44_A Insulin-like growth fac 77.7 1.6 5.3E-05 31.4 3.0 38 195-237 13-51 (96)
134 1whx_A Hypothetical protein ri 77.5 2 6.8E-05 32.1 3.6 37 195-236 8-44 (111)
135 2cpi_A CCR4-NOT transcription 77.2 2 6.8E-05 32.0 3.5 40 194-238 12-54 (111)
136 2qfj_A FBP-interacting repress 77.1 1.9 6.6E-05 35.5 3.8 38 196-238 27-64 (216)
137 2hgn_A Heterogeneous nuclear r 76.4 1.5 5.1E-05 34.6 2.7 38 195-238 44-81 (139)
138 1wg1_A KIAA1579 protein, homol 76.3 2.6 8.7E-05 29.8 3.8 33 196-234 4-36 (88)
139 2dis_A Unnamed protein product 76.0 2.2 7.6E-05 31.3 3.5 38 194-235 5-42 (109)
140 1l8d_A DNA double-strand break 75.9 4.6 0.00016 30.2 5.3 29 275-303 48-82 (112)
141 2dhx_A Poly (ADP-ribose) polym 75.6 3.1 0.00011 31.2 4.1 35 196-233 7-44 (104)
142 3ue2_A Poly(U)-binding-splicin 75.5 2.3 7.9E-05 32.5 3.5 42 196-239 19-62 (118)
143 2xnq_A Nuclear polyadenylated 75.5 3.7 0.00013 29.7 4.6 37 194-235 19-56 (97)
144 3md3_A Nuclear and cytoplasmic 75.1 4.9 0.00017 31.2 5.6 39 194-237 84-122 (166)
145 2kn4_A Immunoglobulin G-bindin 75.0 2.6 8.8E-05 33.2 3.9 38 195-237 68-105 (158)
146 2f3j_A RNA and export factor b 74.6 3.3 0.00011 33.8 4.5 39 195-238 86-124 (177)
147 1wel_A RNA-binding protein 12; 74.1 2.7 9.4E-05 31.8 3.6 26 196-224 24-49 (124)
148 1wf1_A RNA-binding protein RAL 74.0 4.2 0.00014 29.9 4.6 35 196-235 26-61 (110)
149 2hzc_A Splicing factor U2AF 65 73.6 2.3 7.9E-05 29.6 2.9 40 195-237 4-52 (87)
150 1qm9_A Polypyrimidine tract-bi 73.4 2.4 8.1E-05 34.6 3.4 38 196-238 2-40 (198)
151 3nmr_A Cugbp ELAV-like family 73.3 4.9 0.00017 31.6 5.2 38 195-237 93-130 (175)
152 1l3k_A Heterogeneous nuclear r 73.2 3.8 0.00013 33.0 4.6 38 195-237 102-139 (196)
153 2adc_A Polypyrimidine tract-bi 73.2 2.6 9E-05 35.5 3.7 40 194-238 31-71 (229)
154 2e5g_A U6 snRNA-specific termi 72.9 5.2 0.00018 28.4 4.8 33 195-232 6-38 (94)
155 2fc8_A NCL protein; structure 72.1 4.8 0.00016 29.0 4.5 36 194-237 12-47 (102)
156 1b7f_A Protein (SXL-lethal pro 72.1 5 0.00017 31.3 4.9 39 195-238 87-125 (168)
157 2ghp_A U4/U6 snRNA-associated 71.1 3.2 0.00011 36.1 3.9 39 195-238 39-77 (292)
158 2qfj_A FBP-interacting repress 70.7 5 0.00017 32.9 4.8 37 196-237 124-160 (216)
159 3q2s_C Cleavage and polyadenyl 70.4 4.7 0.00016 34.4 4.6 39 196-237 67-105 (229)
160 2dnl_A Cytoplasmic polyadenyla 69.7 3.5 0.00012 30.7 3.3 37 195-237 6-42 (114)
161 2pe8_A Splicing factor 45; RRM 69.1 5.8 0.0002 29.4 4.4 41 195-237 6-48 (105)
162 3tyt_A Heterogeneous nuclear r 68.0 5.1 0.00018 33.4 4.3 38 195-237 2-40 (205)
163 3sde_A Paraspeckle component 1 67.9 6.8 0.00023 33.7 5.2 38 195-237 20-57 (261)
164 3pgw_A U1-A; protein-RNA compl 67.8 5.3 0.00018 34.5 4.5 40 195-236 7-47 (282)
165 3he5_A Synzip1; heterodimeric 67.8 3.4 0.00012 25.2 2.2 21 283-303 29-49 (49)
166 2fc9_A NCL protein; structure 66.1 6.1 0.00021 28.4 3.9 28 194-224 12-39 (101)
167 1fxl_A Paraneoplastic encephal 65.8 7.1 0.00024 30.2 4.6 38 195-237 86-123 (167)
168 2yh0_A Splicing factor U2AF 65 65.4 8.5 0.00029 30.9 5.1 38 195-237 112-149 (198)
169 2g4b_A Splicing factor U2AF 65 65.2 5.3 0.00018 31.4 3.7 37 196-237 93-129 (172)
170 2lcw_A RNA-binding protein FUS 68.6 1.3 4.6E-05 33.1 0.0 32 195-231 5-36 (116)
171 2jvr_A Nucleolar protein 3; RN 63.6 5 0.00017 30.1 3.0 37 195-235 26-62 (111)
172 4f02_A Polyadenylate-binding p 61.2 8.3 0.00028 31.9 4.3 37 197-238 103-139 (213)
173 2cjk_A Nuclear polyadenylated 60.7 5.4 0.00019 31.1 3.0 36 197-237 87-122 (167)
174 3pgw_A U1-A; protein-RNA compl 57.9 9.1 0.00031 33.0 4.2 39 195-238 205-243 (282)
175 3smz_A Protein raver-1, ribonu 57.2 12 0.00042 32.1 4.9 40 194-238 92-131 (284)
176 2e5j_A Methenyltetrahydrofolat 56.9 10 0.00035 27.0 3.7 27 195-224 17-43 (97)
177 2wbr_A GW182, gawky, LD47780P; 56.9 12 0.00042 27.1 4.0 37 195-236 5-41 (89)
178 2g4b_A Splicing factor U2AF 65 56.2 10 0.00035 29.6 3.9 25 196-220 3-28 (172)
179 2cqh_A IGF-II mRNA-binding pro 56.1 7.8 0.00027 27.3 2.9 28 194-224 5-32 (93)
180 3pgw_S U1-70K; protein-RNA com 55.3 8.8 0.0003 36.1 3.8 37 196-237 101-137 (437)
181 1fjc_A Nucleolin RBD2, protein 54.5 11 0.00037 26.6 3.5 28 194-224 13-40 (96)
182 1qm9_A Polypyrimidine tract-bi 53.8 9.7 0.00033 30.8 3.5 37 195-236 118-155 (198)
183 2j8a_A Histone-lysine N-methyl 51.7 15 0.00051 28.8 4.0 37 198-239 3-43 (136)
184 2cpx_A Hypothetical protein FL 49.8 12 0.00041 27.4 3.2 27 195-224 23-49 (115)
185 3tyt_A Heterogeneous nuclear r 49.3 9.4 0.00032 31.7 2.7 38 195-237 121-160 (205)
186 3sde_A Paraspeckle component 1 48.7 17 0.00058 31.1 4.3 37 196-237 95-131 (261)
187 2adc_A Polypyrimidine tract-bi 48.1 16 0.00056 30.4 4.1 37 195-236 149-186 (229)
188 3smz_A Protein raver-1, ribonu 47.4 21 0.0007 30.7 4.7 38 195-237 182-220 (284)
189 3u1l_A PRE-mRNA-splicing facto 45.9 19 0.00066 31.0 4.2 41 194-236 131-177 (240)
190 1fj7_A Nucleolin RBD1, protein 45.9 14 0.00049 26.3 3.0 25 196-220 16-41 (101)
191 3v4m_A Splicing factor U2AF 65 45.7 17 0.00056 26.8 3.3 43 195-239 3-52 (105)
192 2ghp_A U4/U6 snRNA-associated 45.6 14 0.00048 31.9 3.4 38 196-238 209-247 (292)
193 2yh0_A Splicing factor U2AF 65 42.2 13 0.00045 29.7 2.5 25 196-223 3-27 (198)
194 1fje_B Nucleolin RBD12, protei 40.6 20 0.00069 28.0 3.3 30 194-223 10-40 (175)
195 2dit_A HIV TAT specific factor 40.4 54 0.0019 23.8 5.5 38 195-234 13-58 (112)
196 2e5i_A Heterogeneous nuclear r 38.3 54 0.0019 24.9 5.3 36 196-236 22-59 (124)
197 2cq2_A Hypothetical protein LO 37.5 17 0.00059 27.4 2.3 37 195-236 23-61 (114)
198 3egn_A RNA-binding protein 40; 37.2 28 0.00095 26.6 3.5 28 194-224 42-69 (143)
199 3zzy_A Polypyrimidine tract-bi 36.0 43 0.0015 25.8 4.4 35 198-237 29-63 (130)
200 1wey_A Calcipressin 1; structu 35.5 43 0.0015 24.9 4.1 29 198-226 6-36 (104)
201 1sjr_A Polypyrimidine tract-bi 33.2 34 0.0012 27.6 3.5 35 198-237 47-81 (164)
202 3ra3_A P1C; coiled coil domain 29.9 38 0.0013 18.2 2.1 20 284-303 2-25 (28)
203 1jb0_M Photosystem 1 reaction 28.7 69 0.0024 18.3 3.2 22 1-22 2-23 (31)
204 2l2t_A Receptor tyrosine-prote 25.9 68 0.0023 19.9 3.1 13 19-31 25-37 (44)
205 2ks1_B Epidermal growth factor 25.0 76 0.0026 19.7 3.2 13 19-31 26-38 (44)
206 1fje_B Nucleolin RBD12, protei 25.0 49 0.0017 25.6 3.1 27 195-224 97-123 (175)
207 2ll1_A U1-TRTX-SP1A; toxin; NM 23.2 29 0.00099 19.4 0.9 14 266-279 10-23 (33)
208 3v1a_A Computational design, M 22.2 58 0.002 20.7 2.3 23 283-305 25-47 (48)
209 2dnr_A Synaptojanin-1; RRM dom 21.5 1.2E+02 0.004 21.9 4.2 43 194-238 4-51 (91)
210 1x5p_A Negative elongation fac 21.1 1.4E+02 0.0047 20.7 4.6 34 195-235 13-46 (97)
211 2xus_A Breast cancer metastasi 21.1 49 0.0017 21.1 1.8 18 287-304 27-44 (49)
212 3s6e_A RNA-binding protein 39; 21.0 1.2E+02 0.0042 22.4 4.5 41 196-238 6-53 (114)
213 1owx_A Lupus LA protein, SS-B, 20.5 90 0.0031 23.7 3.6 40 195-239 16-56 (121)
No 1
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=91.74 E-value=0.2 Score=36.96 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.....||.|.|||.+.++ +.|.++|++..+-.+.+|.+++|
T Consensus 6 ~~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d 46 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKD 46 (95)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCC
T ss_pred CCccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEec
Confidence 345679999999998764 67888888765545667777665
No 2
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=91.00 E-value=0.3 Score=34.51 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 45689999999998664 5677788765 45778888776
No 3
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.89 E-value=0.33 Score=35.40 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
....+||.|.|||.+.++ +.|+++|+...||.|.++.+.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~~~~~~~g~a 54 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVERVKKIRDYA 54 (99)
T ss_dssp SSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEEEEEECSSEE
T ss_pred cCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEEeCCeE
Confidence 445789999999998664 5677788777678888877665543
No 4
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=90.83 E-value=0.34 Score=34.94 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~ 52 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKDR 52 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 456789999999998664 5678888775 457788887763
No 5
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.76 E-value=0.35 Score=34.25 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 456789999999998764 5678888765 56778887766
No 6
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.60 E-value=0.48 Score=34.76 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~ 52 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNER 52 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCTT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 445789999999998764 5678888775 5688888887743
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.59 E-value=0.37 Score=34.68 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=29.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~ 41 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDS 41 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCS
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecC
Confidence 45689999999998664 5678888765 457788887763
No 8
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.38 E-value=0.39 Score=35.38 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|+++|... | |.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~ 50 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP 50 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBCS
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecCC
Confidence 345789999999998764 5788899875 5 8888887764
No 9
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.34 E-value=0.52 Score=34.59 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|+++|... + |.++.+.+|-
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~~ 50 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRDK 50 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEECS
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeecC
Confidence 345789999999998764 5788899876 4 8888888764
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=90.30 E-value=0.28 Score=34.48 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|+|.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 42 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 42 (85)
T ss_dssp CCCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEEEEC
Confidence 346689999999998664 5677788765 45777777655
No 11
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.28 E-value=0.3 Score=36.49 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
....+||.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|-.
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~d~~ 48 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRTLH 48 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEECCCT
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEECCC
Confidence 456789999999998764 5677888765 5688888887643
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.18 E-value=0.33 Score=34.92 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 51 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIMKD 51 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEECCC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 456789999999998664 5688888775 45777777665
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=90.06 E-value=0.39 Score=36.24 Aligned_cols=40 Identities=5% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
+..+||.|.|+|.+.++ +.|+++|++. |.|.++.+.+|-.
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~ 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPR 43 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTT
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCC
Confidence 45689999999998764 5678888765 5688888887643
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.05 E-value=0.44 Score=34.67 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=30.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 45 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYD 45 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 456789999999998764 5688888775 56778887765
No 15
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=89.91 E-value=0.53 Score=34.57 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=30.5
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 51 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLRGP 51 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 345789999999998764 5678888765 457888887763
No 16
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.84 E-value=0.47 Score=33.39 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=29.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 34679999999998764 5788899875 56778887766
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=89.78 E-value=0.12 Score=37.63 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=24.3
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+++|.|.|||.+.++ +.|.++|++..+ .|.++.+++|
T Consensus 1 S~~i~v~nLp~~~te---~~l~~~F~~~G~-~v~~v~i~~d 37 (91)
T 2lxi_A 1 SNIVMLRMLPQAATE---DDIRGQLQSHGV-QAREVRLMRN 37 (91)
T ss_dssp CCEEEEETCCSSCCH---HHHHHHHHHHTC-CCSBCCSSSC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHhCC-EeEEEEEEec
Confidence 369999999998664 455666655421 3556666655
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.56 E-value=0.49 Score=33.01 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=27.2
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 36 (83)
T 3md1_A 2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWD 36 (83)
T ss_dssp EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEEC
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEc
Confidence 69999999998764 5677888765 46778887766
No 19
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=89.55 E-value=0.35 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=28.7
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..+||.|.|+|.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 42 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCDK 42 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEESC
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecC
Confidence 3579999999998764 5677788765 557788887763
No 20
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.52 E-value=0.55 Score=33.57 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|+|.+.++ +.|+++|+.. .|.++.+.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC
Confidence 445789999999998764 5678888775 3677888776
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.48 E-value=0.48 Score=34.01 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 193 RRPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 193 ~~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
.....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.++..
T Consensus 6 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~~~~a 47 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTN---QELRAKFEEY--GPVIECDIVKDYA 47 (92)
T ss_dssp CCCSSEEEEEESCCSSCCH---HHHHHHHHTT--SCCCEEEECSSEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEECCEE
Confidence 3456789999999998664 5677777765 4577777776643
No 22
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=89.48 E-value=0.43 Score=35.82 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+..++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 61 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDK 61 (115)
T ss_dssp CSTTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECS
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 345689999999998764 5677788765 457777777664
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.36 E-value=0.52 Score=34.33 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 14 ~~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 53 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR 53 (100)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence 345789999999998664 5678888765 457788877654
No 24
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.31 E-value=0.35 Score=34.16 Aligned_cols=39 Identities=5% Similarity=0.013 Sum_probs=27.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 2 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~ 40 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK---DHIMEIFSTY--GKIKMIDMPVER 40 (88)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEET
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEeCC
Confidence 34579999999998664 4667777664 456677765543
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.28 E-value=0.47 Score=34.06 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=28.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 50 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYD 50 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEc
Confidence 445789999999998664 4677777765 45777877765
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.22 E-value=0.52 Score=34.57 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=29.3
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 48 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPRE 48 (103)
T ss_dssp CSCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBC
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 345689999999998764 5678888765 45777777665
No 27
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.18 E-value=0.41 Score=34.07 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=29.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTE---DELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSCH---HHHHHHSTTT--SCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEEecC
Confidence 34689999999998764 5788888776 45777877765
No 28
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=89.07 E-value=0.58 Score=35.23 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..+||.|.|||.+.++ +.|+++|++. |.|.++.+.+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 75 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFID 75 (118)
T ss_dssp CCCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 445689999999998764 5688888775 56777777655
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=89.06 E-value=0.63 Score=34.23 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp BTTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEec
Confidence 345689999999998664 5677788775 56778877765
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=89.02 E-value=0.64 Score=34.72 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 61 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMD 61 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 456789999999998664 5678888765 45778887766
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=88.95 E-value=0.45 Score=35.98 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.2
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+.+|.|.|||.+.++ +.|.++|+.. |.|.++.+++|-
T Consensus 5 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~ 41 (115)
T 4f25_A 5 SGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE 41 (115)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET
T ss_pred CCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC
Confidence 458999999998764 5778888776 568888888774
No 32
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.82 E-value=0.6 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~~~~~~ 47 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTITVVQR 47 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEEEEEGG
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEEEEECC
Confidence 456789999999998654 5677777765 45778877763
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.78 E-value=0.44 Score=34.56 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=28.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 45679999999998664 5677777765 457777777654
No 34
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=88.75 E-value=0.48 Score=34.88 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=28.6
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+..+|.|.|||.+.++ +.|.++|++. |.|.++.+.+|-
T Consensus 18 ~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~ 55 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDK 55 (99)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecC
Confidence 3468999999998764 5677788765 568888887763
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.75 E-value=0.78 Score=33.55 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 50 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKD 50 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeec
Confidence 445789999999998764 6788899875 55778888776
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=88.74 E-value=0.64 Score=34.27 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 456789999999998764 5677778764 45777877765
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=88.67 E-value=0.74 Score=34.45 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 346789999999998764 5677788765 45778888776
No 38
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=88.57 E-value=0.65 Score=33.12 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~ 43 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKME 43 (92)
T ss_dssp SSSCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEES
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcc
Confidence 355789999999998664 5677777765 45777777664
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.39 E-value=0.52 Score=35.43 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 52 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITD 52 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEEc
Confidence 345789999999998664 5677777765 45778877766
No 40
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.34 E-value=0.56 Score=34.06 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCcceEEEEecCCCCCc-hhHHHHHHHhccccCCCcceeEEeEcccch
Q 021948 194 RPDQFTVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVVNNANK 240 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~-~~l~~~l~~~F~~~~p~~v~~v~i~~d~~~ 240 (305)
.....+|.|.|||.+.+ +.|++.|.++|+.. |.|.++.+.+|-..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY 51 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC
Confidence 34568999999999754 45665555888765 56888888876543
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.30 E-value=0.6 Score=33.89 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcce-eEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL-THQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~-~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|+++|+.. |.|. ++.+.+|-
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~~~ 46 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIRNR 46 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEECS
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEeecC
Confidence 445689999999998664 4567777664 4466 77777663
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.20 E-value=0.58 Score=34.29 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=28.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccc-cCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLV-NHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~-~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|.++|+. . |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~~ 45 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVLD 45 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEEC
Confidence 345689999999998664 456667765 4 45777877766
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=88.18 E-value=0.6 Score=34.67 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 61 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD 61 (110)
T ss_dssp BTTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECCBC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 445789999999998664 5677788765 45777777665
No 44
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=88.07 E-value=0.55 Score=34.35 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 345789999999998664 5677788765 56778877765
No 45
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.90 E-value=0.69 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 26 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~ 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE 65 (109)
T ss_dssp TTCCCEEEEESCCTTCCH---HHHHHHGGGT--CCCSCEEECCBT
T ss_pred CCCCCEEEEECCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 445789999999998764 5688888876 557788877764
No 46
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.90 E-value=0.46 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~~~~~a 46 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTS---QELRSLFERR--GRVIECDVVKDYA 46 (90)
T ss_dssp SCCSCCEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEECSSCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHcC--CCEEEEEEECCEE
Confidence 456789999999998654 4566677665 4477787776643
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.88 E-value=0.58 Score=34.36 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 51 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKDR 51 (105)
T ss_dssp CCTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBCS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 345689999999998664 5677777765 457788777664
No 48
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.84 E-value=0.57 Score=35.27 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=30.1
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcc-eeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHY-LTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v-~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|.++|+.. |.| .++.+++|-
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHVLVDN 52 (114)
T ss_dssp CSCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEECCCT
T ss_pred CCCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEEEECC
Confidence 345689999999998764 5688899876 556 567777664
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.82 E-value=0.51 Score=34.48 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 47 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNE---QSLEQVFSKY--GQISEVVVVKD 47 (102)
T ss_dssp CCCCSEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEEECCC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 456789999999998654 4566666654 45677777665
No 50
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.80 E-value=0.56 Score=34.03 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 44 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSE---EDLEKLFSAY--GPLSELHYPIDS 44 (99)
T ss_dssp CCSCEEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCCCT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC
Confidence 345689999999998664 4677777665 457777776654
No 51
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.75 E-value=0.53 Score=36.44 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=29.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCC--CcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP--DHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p--~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|+...+ +.|.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 34579999999998764 567888877644 44677888876
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.75 E-value=0.95 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|+|.+.++ +.|+++|+.. |.|.++.+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEECC
Confidence 345689999999998664 5678888765 56888877765
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.74 E-value=0.88 Score=33.95 Aligned_cols=39 Identities=10% Similarity=-0.171 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+.+++|.|.|+|.+.++ +.|+++|+.. |.|.++.+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~V~~v~i~~~ 50 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVE---ADLVEALEKF--GTICYVMMMPF 50 (104)
T ss_dssp CCCCSEEEEESCCSSCCH---HHHHHHHTTT--SCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEECC
Confidence 445789999999998664 5677888765 56778877654
No 54
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.71 E-value=0.52 Score=33.96 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.++..||.|.|+|.+.++ +.|+++|++. |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEeeC
Confidence 456689999999998765 5678888775 56888887765
No 55
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.68 E-value=0.54 Score=35.47 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=28.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+...+|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 355689999999998654 4566667654 56888888875
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.67 E-value=0.85 Score=33.35 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|... |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMME 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 346789999999998764 5688899875 45788888776
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.64 E-value=0.77 Score=33.58 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.0
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 45689999999998764 5677888775 45778877776
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.56 E-value=0.76 Score=34.27 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 345689999999998764 5678888765 56778887776
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=87.43 E-value=0.54 Score=34.62 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=27.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 48 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEF--GKIYELTVLKD 48 (106)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEec
Confidence 456789999999998664 4566666665 45677777665
No 60
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=87.42 E-value=0.85 Score=34.04 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=29.2
Q ss_pred CCCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 193 RRPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 193 ~~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
..+.+++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v~i~~ 55 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYVVVMP 55 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEET
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEEc
Confidence 3556789999999998654 5677778765 5688887764
No 61
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.25 E-value=0.53 Score=32.29 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=25.7
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.||.|.|+|.+.++ +.|+++|++. |.|.++.+.+|
T Consensus 1 ~~l~v~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CCEEEESCCSSCCS---HHHHHHHTTT--SCCCCEEEECC
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEecC
Confidence 37999999998664 4577788765 45677777665
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.24 E-value=0.48 Score=34.17 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=27.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeE-EeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH-QVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v-~i~~d 237 (305)
...+||.|.|||.+.++ +.|.++|+.. |.|.++ .+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~i~~~ 41 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDE---KLLYDTFSAF--GVILQTPKIMRD 41 (96)
T ss_dssp SCCCEEEEECCCTTCCH---HHHHHHHHTT--SCBSSCCEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEEc
Confidence 35689999999998664 5677777665 446666 67665
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.22 E-value=0.54 Score=34.34 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 47 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 47 (102)
T ss_dssp CCCCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEECCCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEEEec
Confidence 456789999999998664 5678888765 45777777665
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.16 E-value=0.74 Score=33.70 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 51 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTE---VLILQLFSQI--GPCKSCKMITEH 51 (103)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHhc--CCEeEEEEEecC
Confidence 45689999999998654 4566667655 457788888763
No 65
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.11 E-value=1 Score=32.72 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|||.+.++ +.|+++|++. |.|.++.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~~~ 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITE---EEMRKLFEKY--GKAGEVFIHKD 50 (99)
T ss_dssp CCCTTEEEEESCCTTCCH---HHHHHHTSTT--CCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhc--CCeEEEEEecC
Confidence 345689999999998764 5688888875 45777777654
No 66
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.05 E-value=0.8 Score=35.32 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+.+++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 28 ~~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 345789999999998664 5677888765 56888888765
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.00 E-value=1 Score=33.35 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=29.3
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|.+. |.|.++.+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYRD 50 (108)
T ss_dssp SCCCEEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEecC
Confidence 34689999999998764 5677888775 45788888776
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.93 E-value=0.63 Score=34.24 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQ---REIRELFSTF--GELKTVRLPKK 50 (107)
T ss_dssp SSCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHcc--CCeEEEEEecC
Confidence 446789999999998664 4577777665 45778887776
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=86.88 E-value=0.58 Score=33.85 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=27.0
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 2 ~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 37 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE---EQILDLCSNV--GPVINLKMMFD 37 (96)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CcEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 479999999998664 5677777765 45777777766
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=86.67 E-value=0.8 Score=34.87 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=28.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|... |.|.++.+.+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 57 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLD 57 (126)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 456789999999998664 5677777664 45777777766
No 71
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=86.49 E-value=0.74 Score=36.58 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.7
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.++||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~ 39 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDR 39 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecC
Confidence 4689999999998764 5677778765 457788877663
No 72
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.42 E-value=1.1 Score=33.28 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=29.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 45679999999998764 5688898775 45778888776
No 73
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.35 E-value=0.68 Score=34.03 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 345789999999998664 5677777765 45777877776
No 74
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=86.25 E-value=0.73 Score=36.24 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+++||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC
Confidence 3579999999998764 5677777765 457788777664
No 75
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.03 E-value=0.73 Score=34.14 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|.++|... |.|.++.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRVVLH 50 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 45689999999998664 5677777665 45777877766
No 76
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=85.98 E-value=0.98 Score=33.73 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
...+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-.
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~~ 45 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNTPE 45 (115)
T ss_dssp TCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECSTT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeCCC
Confidence 45679999999998664 4577778765 5678888877643
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=85.92 E-value=0.65 Score=34.71 Aligned_cols=39 Identities=5% Similarity=0.090 Sum_probs=28.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~~ 61 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRDP 61 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEECC
Confidence 45689999999998764 5678888775 567888887763
No 78
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=85.65 E-value=0.99 Score=34.81 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 98 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 98 (140)
T ss_dssp CSSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCCC
T ss_pred CCCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEEeec
Confidence 345789999999998664 5677788765 45777777665
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=85.62 E-value=0.64 Score=33.27 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=25.9
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+||.|.|+|.+.++ +.|+++|+...+..|.++.+.+|
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~ 38 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFEN 38 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEEC
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEec
Confidence 68999999998664 56777777654326778888776
No 80
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.60 E-value=1 Score=33.65 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=30.0
Q ss_pred CcceEEEEecCCC-CCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~-~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+++|.|.|||. +.++ +.|+++|+.. |.|.++.+.+|
T Consensus 13 ~p~~~l~V~nLp~~~~te---~dL~~lF~~f--G~V~~v~i~~~ 51 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLR---YQLLQLVEPF--GVISNHLILNK 51 (102)
T ss_dssp CCCCEEEEESCCCSSSHH---HHHHTTTGGG--SCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCcCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 3568999999999 7654 6788899876 66888888765
No 81
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=85.60 E-value=0.94 Score=36.82 Aligned_cols=40 Identities=5% Similarity=0.078 Sum_probs=30.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~ 49 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRDP 49 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEcC
Confidence 446789999999998764 5677788775 457788877763
No 82
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=85.49 E-value=0.83 Score=38.29 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..+||.|.|||.+.++ +.|.++|++. |.|.++.+++|-
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~ 51 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDM 51 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeccc
Confidence 4579999999998764 5678888776 568888888763
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.40 E-value=1.3 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~~g~ 44 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATE---QEIRSLFEQY--GKVLECDIIKNY 44 (90)
T ss_dssp SSCCEEEEEESCCSSCCH---HHHHHHHHTS--SCEEEEEEETTE
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEECCE
Confidence 456789999999998664 5677777765 457777776443
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.95 E-value=0.8 Score=34.22 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=27.5
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCS
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEec
Confidence 579999999998764 5678888765 56777777654
No 85
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=84.91 E-value=1.1 Score=33.94 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=29.2
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKDR 43 (116)
T ss_dssp CSCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECST
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 34579999999998664 5677778765 457788887764
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.55 E-value=0.51 Score=34.57 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=27.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 7 ~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~ 43 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYD 43 (104)
T ss_dssp HHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEE
T ss_pred CccEEEEeCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeC
Confidence 4689999999998654 4577777665 45777777765
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=84.39 E-value=1.6 Score=31.61 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCccee--------EEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT--------HQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~--------v~i~~d 237 (305)
.+..++|.|.|+|.+.++ +.|+++|+.. |.|.+ +.+.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~ 56 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTI---ESVADYFKQI--GIIKTNKKTGQPMINLYTD 56 (99)
T ss_dssp CCCCSEEEEECCCSSCCH---HHHHHHHTTT--SCBCEETTTTEESEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCEeeccccccccEEEEec
Confidence 456789999999998764 5678888765 45666 667665
No 88
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=84.13 E-value=1.5 Score=34.79 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=29.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 75 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLDK 75 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 35689999999998664 5677888776 457788887663
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.01 E-value=1.9 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|+++|+... ++++.+++|-
T Consensus 12 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~d~ 50 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEIGP 50 (102)
T ss_dssp CSSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEECC
Confidence 345689999999998764 67899998763 3378887763
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.93 E-value=1.5 Score=32.38 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=27.6
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|+++|++. |.|.++.+..+
T Consensus 20 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~~ 57 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRT---KDIEDVFYKY--GAIRDIDLKNR 57 (109)
T ss_dssp CCSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 45689999999998764 5677788775 45777766543
No 91
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.85 E-value=0.94 Score=34.14 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.8
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..++|.|.|+|.+.++ +.|+++|+.+ .|.++.+++|-
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~~d~ 51 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLLKDH 51 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEECCCT
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEEECC
Confidence 3579999999998764 6788899876 36678887763
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=83.78 E-value=0.76 Score=36.10 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=27.9
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
|||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 69999999998764 5677888775 457788887664
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=83.76 E-value=0.79 Score=32.87 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=24.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
+..++|.|.|||.+.++ +.|+++|+.. |.|.++.+..
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~~~~ 49 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSI---DEILDFFYGY--QVIPGSVCLK 49 (95)
T ss_dssp --CEEEEEECCCTTCCH---HHHHHHTTTS--CBCTTCCEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCccceEEEE
Confidence 45689999999998764 5678888765 3344444333
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.65 E-value=1.1 Score=32.45 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=28.4
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..++|.|.|||.+.++ +.|+++|++. |.|.++.+..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~~~~~ 52 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSL---AALAREFDRF--GSIRTIDHVKG 52 (97)
T ss_dssp CCCCSCEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeCC
Confidence 345689999999998664 5677777765 45777776654
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.46 E-value=1.2 Score=33.32 Aligned_cols=36 Identities=6% Similarity=0.139 Sum_probs=28.2
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.++|.|.|||.+.++ +.|.++|... |.|.++.+.+|
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 479999999998764 5678888765 45778888776
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.38 E-value=1.2 Score=32.89 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+..+||.|.|||.+.++ +.|.++|... |.|.++.+.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTD---QLMRQTFSPF--GQIMEIRVFPE 60 (109)
T ss_dssp CSSCCEEEEECCSSCCCH---HHHHHHHHHH--SCEEEEEEETT
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeCC
Confidence 455789999999998664 4566677654 45778888776
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=83.30 E-value=1.7 Score=34.91 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|... |.|.++.+..|
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEec
Confidence 345689999999998664 5677788775 56778887766
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.25 E-value=1.3 Score=33.52 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=30.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCC-CcceeEEeEcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP-DHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p-~~v~~v~i~~d~~ 239 (305)
...+||.|.|||.+.++ +.|.++|+.+.+ +.|.++.+++|-.
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~~~ 57 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYTRE 57 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEECSS
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEECCC
Confidence 34689999999998764 568888877533 2267788877643
No 99
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.25 E-value=1.4 Score=32.37 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=28.6
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCccee-EEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT-HQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~-v~i~~d 237 (305)
...++|.|.|||.+.++ +.|.++|+.. |.|.+ +.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~~v~i~~~ 51 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSK---EEIVQFFSGL--EIVPNGMTLPVD 51 (104)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHTTTC--CEEEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCcceeEEEEEC
Confidence 45689999999998764 5788899765 45655 667666
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=83.22 E-value=1.5 Score=33.23 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=28.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 33 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~ 71 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYDR 71 (124)
T ss_dssp SSCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC
Confidence 34689999999998664 4577777765 457788887764
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=83.15 E-value=1.1 Score=34.78 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=29.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 81 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYD 81 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 45689999999998764 5678888765 45788888776
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=83.10 E-value=0.73 Score=33.71 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....+||.|.|||.+.++ +.|+++|+.. | |.++.+.+|-
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~ 54 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP 54 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCCT
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEecC
Confidence 345789999999998664 4678888875 5 8888877663
No 103
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.00 E-value=1.8 Score=32.10 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=27.7
Q ss_pred CcceE-EEEecCCCCCc-hhHHHHHHHhccccCCCcceeE
Q 021948 195 PDQFT-VLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTH 232 (305)
Q Consensus 195 ~~~~T-vlv~~IP~~~~-~~l~~~l~~~F~~~~p~~v~~v 232 (305)
+.+.| +.|.|+|.+.+ +.|++.|.++|++. -|.|.+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 33446 88999999865 67888899999885 3466665
No 104
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=82.87 E-value=0.99 Score=35.63 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
++||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 3 ~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 38 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKIMKD 38 (167)
T ss_dssp GGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEECCCC
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEC
Confidence 579999999998764 5678888765 45778887766
No 105
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=82.76 E-value=0.94 Score=35.76 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=27.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+.+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 38 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRD 38 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEe
Confidence 4579999999998764 5577777765 45777776665
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=82.54 E-value=1.2 Score=32.68 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=27.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.++..
T Consensus 9 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~~a 48 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTE---EILEKAFSQF--GKLERVKKLKDYA 48 (103)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHH--SCEEEEEECSSCE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEECCEE
Confidence 34689999999998654 4566666654 4577777766543
No 107
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=82.37 E-value=1.3 Score=32.71 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=30.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCC-CcceeEEeEcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP-DHYLTHQVVNNAN 239 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p-~~v~~v~i~~d~~ 239 (305)
....++|.|.|+|.+.++ +.|.++|+...+ +.|.++.+.+|-.
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~~~~~ 51 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFLLNRD 51 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECCCCTT
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEEECCC
Confidence 345689999999998664 567888887532 2366777776643
No 108
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=82.23 E-value=0.53 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=23.3
Q ss_pred EEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 199 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 199 Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
||.|.|||.+.++ +.|+++|++. |.|.++.+.+|
T Consensus 1 ~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 1iqt_A 1 KIFVGGLSPDTPE---EKIREYFGGF--GEVESIELPMD 34 (75)
T ss_dssp CEEESCCCSSCCH---HHHHHHHHHH--SCCSEECCCCS
T ss_pred CEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 6899999998654 4566667665 34666666554
No 109
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=82.05 E-value=1.5 Score=31.38 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCCc-hhHHHHHHHhccccCCCcceeEEeE
Q 021948 195 PDQFTVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~-~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
+..+||.|.|||.+.+ +.|++.|.++|+.. |.|.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~ 45 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVS 45 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEE
Confidence 4567999999999855 45665666888876 456676654
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=81.79 E-value=0.57 Score=34.38 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=29.0
Q ss_pred ceEEEEecCCCCCc---hhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 197 QFTVLVRNVPPDPD---ESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~---~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+||.|.|||.-.. +...+.|.++|+.. |.|.++.+++|-
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~ 48 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDE 48 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEET
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcC
Confidence 57999999998211 33467788888875 568888887764
No 111
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=81.65 E-value=0.94 Score=34.15 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.4
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+..|
T Consensus 15 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCCT---THHHHHHGGG--SCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 4589999999998654 4567777765 45778877765
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=81.52 E-value=0.63 Score=33.10 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=26.2
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-
T Consensus 2 ~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 37 (90)
T 2ki2_A 2 RNIYVGNLVYSATS---EQVKELFSQF--GKVFNVKLIYDR 37 (90)
T ss_dssp EEEEEEEECTTSSH---HHHTTTHHHH--TCCSEEEECCCS
T ss_pred cEEEECCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEcC
Confidence 68999999998664 4577777765 456677776653
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=80.89 E-value=1.4 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.2
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~ 77 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCD 77 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 4589999999998664 4566667665 45778877765
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=80.84 E-value=1.2 Score=33.76 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=27.8
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 579999999998664 5677788765 56778888776
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=80.84 E-value=1.4 Score=33.83 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=27.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCccee--EEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT--HQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~--v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|+++|+.. |.|.+ +.+++|-
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~--G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPY--AVLSSSNVRVIKDK 61 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGG--CCCCTTTEECCBCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCcceeeEEEEEcC
Confidence 35679999999998664 4567777765 34544 6777665
No 116
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.81 E-value=1.8 Score=32.12 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=27.5
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcce--------eEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL--------THQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~--------~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|.++|+.. |.|. .+.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~ 58 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTL---DDLADFFKQC--GVVKMNKRTGQPMIHIYLD 58 (113)
T ss_dssp CCCCCEEEEECCCTTCCH---HHHHHHHTTT--SCBCBCSSSCCBSEECCBC
T ss_pred CCCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCEeEccccCccCEEEEEe
Confidence 345789999999998664 5677788765 3455 4666665
No 117
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.64 E-value=2.1 Score=32.55 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=28.6
Q ss_pred CcceEEEEecCCCC-CchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~-~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
..+++|.|.|||.+ .++ +.|+++|+.. |.|.++.+.+
T Consensus 23 ~p~~~l~V~NLp~~~~te---~~L~~lF~~f--G~V~~v~i~~ 60 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSD---SAVLKLAEPY--GKIKNYILMR 60 (112)
T ss_dssp CCCCEEEEESCCCSSCCS---HHHHTTTTTT--SCCSEEEEET
T ss_pred CCCCEEEEeCCCCccCCH---HHHHHHHHhc--CCEEEEEEec
Confidence 45689999999997 665 5688888775 5678888764
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=80.30 E-value=2 Score=29.84 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=26.5
Q ss_pred eEEEEecCCCCCch---hHHHHHHHhccccCCCcceeEEeEc
Q 021948 198 FTVLVRNVPPDPDE---SVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~---~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
+||.|.|||.+.++ ...+.|+++|+.. |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~ 41 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPE 41 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecC
Confidence 69999999987532 1357788888775 4577776653
No 119
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=80.19 E-value=2.2 Score=33.01 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcce--eEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL--THQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~--~v~i~~d~ 238 (305)
...++|.|.|||.+.++ +.|+++|+.. + |+ ++.+++|-
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~--~-i~~~~v~i~~d~ 79 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL--E-IVPNGITLPVDP 79 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEECCCCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC--C-ceeeEEEEEECC
Confidence 34689999999998764 6788899875 3 45 77777664
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=80.18 E-value=1 Score=30.67 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=24.2
Q ss_pred EEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 199 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 199 Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 1 ~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 2mss_A 1 KIFVGGLSVNTTV---EDVKHYFEQF--GKVDDAMLMFD 34 (75)
T ss_dssp CEEEECCCSSCCH---HHHHHHHHTT--SCCSEECCCBC
T ss_pred CEEEecCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 4789999998664 5677777765 45667766655
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=80.07 E-value=1.8 Score=33.94 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=29.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCC-cceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~-~v~~v~i~~d~ 238 (305)
...++|.|.|+|.+.++ +.|.++|+...+- .|.++.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTR 83 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECC
Confidence 35689999999998764 5788899876331 16678887764
No 122
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=79.78 E-value=1.9 Score=33.34 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=29.8
Q ss_pred CcceEEEEecCCCCCc-hhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~-~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
+...||.|.|||.+.+ +.|++.|.++|+.. |.|.++.+..
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~ 67 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL 67 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc
Confidence 4567999999999754 56777788888876 5577776543
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=79.69 E-value=1.9 Score=34.50 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..++|.|.|||.+.++ +.|+++|+...+..|.++.+++|
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEec
Confidence 4579999999998764 56777777664336888888877
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.39 E-value=1.4 Score=31.67 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
+..++|.|.|||.+.++ +.|+++|...
T Consensus 13 ~~~~~l~v~nLp~~~t~---~~l~~~F~~~ 39 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSI---DEILDFFYGY 39 (98)
T ss_dssp CSSEEEEEESCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 45689999999998764 5678888775
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=79.27 E-value=1.6 Score=31.65 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=25.3
Q ss_pred EEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 199 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 199 Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
||.|.|||.+.++ +.|.++|++. |.|.++.+.+|
T Consensus 2 ~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGK---GELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSH---HHHHHHHHHH--CCCSEEEEESS
T ss_pred EEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 8999999998654 4566677665 45778888777
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=79.25 E-value=1.3 Score=34.43 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 46 ~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 82 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRD 82 (135)
T ss_dssp GCCCEEEECCCSSCHH---HHHHHHHGGG--SCCSEEECCCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 4689999999998654 5677788775 45777777765
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=79.22 E-value=3.1 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=28.5
Q ss_pred cceEEEEecCCCCCchh---HHHHHHHhccccCCCcceeEEeEc
Q 021948 196 DQFTVLVRNVPPDPDES---VTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~---l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
..+||.|.|||...++. ..+.|.++|+.. |.|.++.+.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~ 55 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPE 55 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeC
Confidence 35799999999976432 467888999876 4577776653
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=78.82 E-value=2.8 Score=30.14 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=26.8
Q ss_pred CCcceEEEEecCCC-CCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 194 RPDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~-~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
.+..+||.|.|||. +.++ +.|.++|+.. |.|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~ 45 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINIKN 45 (96)
T ss_dssp --CCEEEEEESSTTSCCCH---HHHHHHHTTT--CCCCEEEEET
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 45678999999997 7664 5678888775 4577776653
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=78.82 E-value=2.6 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.8
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
.+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~~~ 60 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATE---ADLIPLFQNF--GFILDFKHY 60 (101)
T ss_dssp CSSCCEEEEESCCTTCCH---HHHHHHHHTT--SCCSEEEEE
T ss_pred CCCCCEEEEcCCCcccCH---HHHHHHHHhC--CCEEEEEEe
Confidence 445689999999998664 5677777665 456677665
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=78.40 E-value=2.5 Score=31.39 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=27.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQE---SELNEIFGPF--GPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCH---HHHHHHHTTT--SCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 345789999999998664 5678888765 457777766
No 131
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=78.31 E-value=2.1 Score=35.58 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=29.3
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+||.|.|+|.+.++ +.|+++|+.. |.|.++.+++|.
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~~~ 145 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRTL 145 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEECT
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEECC
Confidence 479999999998664 6788889875 558888888764
No 132
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=78.15 E-value=2.1 Score=33.62 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNK---TELERAFGYY--GPLRSVWVARN 108 (150)
T ss_dssp STTSCEEEEESCCSCCSC---HHHHHHHHHH--SCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeeC
Confidence 345689999999998654 4566666654 46788888776
No 133
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.72 E-value=1.6 Score=31.35 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=26.0
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeE-EeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH-QVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v-~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|... |.|.++ .+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~i~~~ 51 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQW---EVLDSLLVQY--GVVESCEQVNTD 51 (96)
T ss_dssp CSCCCEEEEEECSSSCH---HHHHHHHHHH--SCEEEEEEECCS
T ss_pred CCCCEEEEEcCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC
Confidence 34689999999998654 4566666654 456676 45554
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.54 E-value=2 Score=32.07 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=26.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
.+.+||.|.|||.+..+ +.|+++|... |.|.++.+..
T Consensus 8 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~ 44 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLA---AEIQETFSRF--GSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 35689999999998654 5677777664 4566666543
No 135
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.16 E-value=2 Score=31.97 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=29.7
Q ss_pred CCcceEEEEecCCCCCchhHHHHHH---HhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVE---HFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~---~~F~~~~p~~v~~v~i~~d~ 238 (305)
....++|.|.|||.+.++ +.|. ++|... |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~--G~i~~v~i~~~~ 54 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLAD---PEVLKRPEYFGKF--GKIHKVVINNST 54 (111)
T ss_dssp CCCSSCEEEEEECTTTCC---HHHHHSTTTTTTT--SCEEEEEEECCS
T ss_pred ccCCCEEEEECCCCCCCH---HHHHHHHHHhhcc--CCEEEEEEecCC
Confidence 345679999999998664 3556 888775 567888887664
No 136
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=77.13 E-value=1.9 Score=35.48 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~ 64 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWDS 64 (216)
T ss_dssp HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC-
T ss_pred cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeecC
Confidence 3579999999998764 5677788776 457778776653
No 137
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=76.36 E-value=1.5 Score=34.61 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...++|.|.|||.+.++ +.|+++|++.- ++++.+++|-
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~~d~ 81 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIEIGP 81 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECCCSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEEECC
Confidence 34679999999998764 67888998763 4588888774
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=76.27 E-value=2.6 Score=29.79 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=25.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEe
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 234 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i 234 (305)
+.+||.|.|+|.+.++ +.|+++|++. .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 4579999999998764 5788889876 3566655
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.97 E-value=2.2 Score=31.28 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=25.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
+...+||.|.|||.+.++ +.|.++|.+..+ .|.++.+.
T Consensus 5 s~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~-~v~~v~i~ 42 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKR---EEILEEIAKVTE-GVLDVIVY 42 (109)
T ss_dssp CCCSEEEEEECCCTTSCH---HHHHHHHHHHST-TEEEEECC
T ss_pred ccCCCEEEEeCCCCcCCH---HHHHHHHHHhcC-CceEEEEE
Confidence 345789999999997653 455666655422 26666665
No 140
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.86 E-value=4.6 Score=30.24 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=20.3
Q ss_pred CCcCCCCCccc------HHHHHHHHHHHHHHhhcc
Q 021948 275 GFLGLWGKTVD------AIDFYTSKIETLKKEVSG 303 (305)
Q Consensus 275 ~~~~~~g~kvD------ai~yy~~~l~~l~~~i~~ 303 (305)
+.|++||..++ .|+.+.++++.+..++.+
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~ 82 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAK 82 (112)
T ss_dssp EECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778887654 477777777777777654
No 141
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.57 E-value=3.1 Score=31.22 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=25.8
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhcccc---CCCcceeEE
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVN---HPDHYLTHQ 233 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~---~p~~v~~v~ 233 (305)
...+|.|+|+|++.++ +.|+-||++- .-|.|.++.
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 3469999999998764 6889999883 335566554
No 142
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=75.55 E-value=2.3 Score=32.48 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=32.6
Q ss_pred cceEEEEecCCC--CCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 196 DQFTVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 196 ~~~Tvlv~~IP~--~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
.+++|.+.|+-. +.++.+.+.|++.|++. |.|.++.|++|-.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 467999999944 45566788899999875 6788999888753
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=75.51 E-value=3.7 Score=29.67 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCcceEEEEecCCC-CCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 194 RPDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~-~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
.+..++|.|.|||. +.++ +.|+++|+.. |.|.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~---~~L~~~F~~~--G~v~~v~i~ 56 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINIK 56 (97)
T ss_dssp CCTTCEEEEESCCSSCCCH---HHHHHHHGGG--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEe
Confidence 45678999999997 7664 5677788765 457676664
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=75.14 E-value=4.9 Score=31.20 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 345689999999998664 5677788665 45777777765
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=74.98 E-value=2.6 Score=33.24 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=27.6
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 68 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~v~~~~i~~~ 105 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRD 105 (158)
T ss_dssp CBCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeec
Confidence 34689999999998654 4566677654 45777877776
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=74.58 E-value=3.3 Score=33.78 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=28.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
....||.|.|||.+.++ +.|+++|.+. |.|.++.+.+|-
T Consensus 86 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~ 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYDR 124 (177)
T ss_dssp TTCEEEEEECCCSCCCH---HHHHHHHHHT--SCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 45689999999998664 4567777664 456777777653
No 147
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.06 E-value=2.7 Score=31.81 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
..++|.|.|||.+.++ +.|.++|...
T Consensus 24 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 49 (124)
T 1wel_A 24 AGFCVYLKGLPFEAEN---KHVIDFFKKL 49 (124)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHSCSS
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 4589999999998764 5788899775
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=73.98 E-value=4.2 Score=29.93 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=25.5
Q ss_pred cceEEEEecCCCC-CchhHHHHHHHhccccCCCcceeEEeE
Q 021948 196 DQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 196 ~~~Tvlv~~IP~~-~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
..+||.|.|||.+ .++ +.|+++|+.. |.|.++.+.
T Consensus 26 ~~~~l~V~nl~~~~~t~---~~l~~~F~~~--G~v~~v~i~ 61 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKK---SDVETIFSKY--GRVAGCSVH 61 (110)
T ss_dssp CSSEEEECSCCCSSCCH---HHHHHHHGGG--SCCSEEEEE
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEe
Confidence 3579999999998 664 5677788765 346666653
No 149
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=73.57 E-value=2.3 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=24.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhcccc----C----CC-cceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN----H----PD-HYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~----~----p~-~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|+++|++. . |+ .|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITE---EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCCH---HHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 34689999999998653 3445555443 1 11 4667776654
No 150
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=73.45 E-value=2.4 Score=34.59 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=27.9
Q ss_pred cceEEEEecCCC-CCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~-~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+++||.|.|||. +.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEEeCC
Confidence 457999999999 7664 5677777765 447777777664
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=73.34 E-value=4.9 Score=31.57 Aligned_cols=38 Identities=5% Similarity=0.093 Sum_probs=28.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~ 130 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRILRG 130 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEEEC
Confidence 35689999999998664 5677788765 45778888776
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=73.18 E-value=3.8 Score=33.02 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEeec
Confidence 44589999999998664 5677888765 56788888776
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=73.17 E-value=2.6 Score=35.54 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCC-CCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~-~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+.++||.|.|||. +.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 31 ~~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~~~~ 71 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 71 (229)
T ss_dssp CCCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence 34578999999999 7654 4566777665 457788887764
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.94 E-value=5.2 Score=28.42 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=24.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeE
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH 232 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v 232 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEE
Confidence 34579999999998764 5678888775 446665
No 155
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.13 E-value=4.8 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.6
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
....+||.|.|||.+.++ +.|+++|+.. .++.+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~-----~~~~~~~~ 47 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTE---ETLKESFDGS-----VRARIVTD 47 (102)
T ss_dssp SCCCSSEEEECCCTTCCH---HHHHHTSTTC-----SEEEEEEC
T ss_pred CCCCCEEEEeCCCCccCH---HHHHHHhcCC-----eEEEEEec
Confidence 345789999999998764 5688888743 24555554
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=72.06 E-value=5 Score=31.34 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=29.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 87 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 125 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILRDK 125 (168)
T ss_dssp TTTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEECT
T ss_pred CCCCCEEEeCCCCCCCH---HHHHHhhhcC--CcEEEEEEEEcC
Confidence 45689999999998664 5678888765 457777777654
No 157
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.10 E-value=3.2 Score=36.13 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=28.4
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
...+||.|.|||.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL 77 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 45789999999998764 5677888775 457888887764
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=70.69 E-value=5 Score=32.89 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=28.7
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..++|.|.|||.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 4579999999998664 5677888765 56788888776
No 159
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=70.36 E-value=4.7 Score=34.37 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..++|.|.|||.+.++ +.|+++|..+.+..|.++.|.+|
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEec
Confidence 4579999999998764 56777887653226888888776
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.70 E-value=3.5 Score=30.69 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=25.8
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|||.+.++ +.|+++|++. |.|. +.++.|
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~--G~i~-~~~~~~ 42 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRF--GPLV-VDWPHK 42 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTT--CCCC-EECTTS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCEE-EEEeec
Confidence 34689999999998764 5678888776 3444 444443
No 161
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=69.06 E-value=5.8 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=29.5
Q ss_pred CcceEEEEecCCC--CCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~--~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+++|.|.|+.. +.++.+.+.|++.|++. |.|.++.+++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~ 48 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEI 48 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecC
Confidence 4567999999964 34444577888888876 56889988876
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=68.00 E-value=5.1 Score=33.38 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=28.4
Q ss_pred CcceEEEEecCC-CCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVP-PDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP-~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
+...||.|.|+| .+.++ +.|.++|... |.|.++.+.+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~i~~~ 40 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVKFMKS 40 (205)
T ss_dssp CCCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEEECTT
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 345799999999 56654 4677788764 67888888775
No 163
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=67.89 E-value=6.8 Score=33.66 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+||.|.|||.+.++ +.|.++|+.. |.|.++.+.++
T Consensus 20 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITE---EDFKRLFERY--GEPSEVFINRD 57 (261)
T ss_dssp CGGGEEEEESCCTTCCH---HHHHHHTGGG--CCCSEEEEETT
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 45689999999998764 5678888776 45777777654
No 164
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=67.83 E-value=5.3 Score=34.52 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.9
Q ss_pred CcceEEEEecCCCCCc-hhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~-~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
...+||.|.|||.+.+ +.|++.|.++|... |.|.++.+.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v~~~~ 47 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDILVSR 47 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEEEEcC
Confidence 4568999999999854 55666677888765 5677777665
No 165
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.78 E-value=3.4 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHHHHHhhcc
Q 021948 283 TVDAIDFYTSKIETLKKEVSG 303 (305)
Q Consensus 283 kvDai~yy~~~l~~l~~~i~~ 303 (305)
|-|-|.|+.+++..|.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 458899999999999999975
No 166
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.11 E-value=6.1 Score=28.38 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
....++|.|.|||.+.++ +.|+++|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp SCCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 345789999999998764 5688888764
No 167
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=65.77 E-value=7.1 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=27.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 123 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRILVD 123 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 34579999999998654 5677788765 45777777665
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=65.44 E-value=8.5 Score=30.90 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=28.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeec
Confidence 45689999999997654 5677777765 45777777766
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=65.18 E-value=5.3 Score=31.36 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=27.7
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 93 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEec
Confidence 3679999999998654 5677777764 55777877776
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=68.62 E-value=1.3 Score=33.11 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.5
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCccee
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT 231 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~ 231 (305)
...++|.|.|||.+.++ +.|+++|+.. |.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQI--GIIKT 36 (116)
Confidence 45679999999997653 4567777765 34545
No 171
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=63.59 E-value=5 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=25.1
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
+..++|.|.|||.+.++ +.|+++|++..+ .|..+.+.
T Consensus 26 ~~~~~l~VgnLp~~~te---~dL~~~F~~~G~-~v~~v~i~ 62 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSW---QDLKDLARENSL-ETTFSSVN 62 (111)
T ss_dssp CCCEEEEEECSSCCCCH---HHHHHHHHHHTC-CCSEEECS
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHhCC-eeEEEEEE
Confidence 45689999999998664 456667766532 45566553
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=61.17 E-value=8.3 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.3
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..+|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d~ 139 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE 139 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeeccC
Confidence 468999999998764 5677788765 567888887764
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=60.73 E-value=5.4 Score=31.14 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=26.5
Q ss_pred ceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 197 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 197 ~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
..+|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|
T Consensus 87 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 122 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRP---KEFEEFFSQW--GTIIDAQLMLD 122 (167)
T ss_dssp CEEEEEEEECTTCCH---HHHHHHHHTT--SCCSEEECCCS
T ss_pred CCeEEECCCCCCCCH---HHHHHHHHhC--ccEEEEEEEEc
Confidence 579999999998654 4577777764 45777777665
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=57.92 E-value=9.1 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
+..+||.|.|||.+.++ +.|.++|+.. |.|.++.+..+-
T Consensus 205 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~i~~v~~~~~~ 243 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNE---LMLSMLFNQF--PGFKEVRLVPGR 243 (282)
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHhc--CCeEEEEEecCC
Confidence 45689999999997653 5677777664 567787776543
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=57.20 E-value=12 Score=32.13 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.+..++|.|.|+|.+.++ +.|.++|+.. |.|.++.+.+|-
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 131 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYSE 131 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeeC
Confidence 455679999999998764 5677788765 447777776653
No 176
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.88 E-value=10 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=19.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
...++|.|.|||.+.++ +.|+++|++.
T Consensus 17 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 43 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARV---SDLKRALREL 43 (97)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHHT
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhc
Confidence 34689999999998664 4566667665
No 177
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=56.85 E-value=12 Score=27.07 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
..+..++|.|++.+.++ +.|.++|.+. |.|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~te---~~L~~lF~q~--G~V~~~~l~~ 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDG---PTLRTLCMQH--GPLVSFHPYL 41 (89)
T ss_dssp CCCCEEEEECCCTTCCC---HHHHHHHHHH--SCEEEEEEET
T ss_pred CccceEEEeCCCccCCH---HHHHHHHHhh--CCEEEEEEcC
Confidence 45679999999998764 4556666555 4477777644
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=56.24 E-value=10 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=16.9
Q ss_pred cceEEEEecCCCCCc-hhHHHHHHHh
Q 021948 196 DQFTVLVRNVPPDPD-ESVTQLVEHF 220 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~-~~l~~~l~~~ 220 (305)
.++||.|.|||.+.+ +.|++.++++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~ 28 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQ 28 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHH
Confidence 357999999999865 3344444443
No 179
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.13 E-value=7.8 Score=27.28 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=20.2
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
....+||.|.|||.+.++ +.|+++|+..
T Consensus 5 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 32 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTA---DDLRQLFGDR 32 (93)
T ss_dssp CCCCCCEEEECCCTTCCH---HHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 345689999999998664 4566666654
No 180
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=55.31 E-value=8.8 Score=36.11 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...||.|.|||.+.++ +.|.++|..+ |.|.+|.|+.|
T Consensus 101 ~~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d 137 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYS 137 (437)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeecc
Confidence 3479999999998664 5677778765 56778888776
No 181
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=54.53 E-value=11 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=21.3
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
....+||.|.|||.+.++ +.|.++|+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 345789999999998764 5677777664
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=53.79 E-value=9.7 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.2
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCC-cceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~-~v~~v~i~~ 236 (305)
+..+||.|.|+|.+.++ +.|.++|+.. | .|.++.+..
T Consensus 118 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCCCEEEECCCCTTCCH---HHHHHHHHHT--TSCCCEEEESS
T ss_pred CCccEEEEeCCCCCCCH---HHHHHHHHHc--CCCceEEEEEe
Confidence 45789999999998653 4566677665 4 566776644
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=51.71 E-value=15 Score=28.83 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=25.4
Q ss_pred eEEEEecC----CCCCchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 198 FTVLVRNV----PPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 198 ~Tvlv~~I----P~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
..|.|.|+ |....+ ..|++||... |.|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 47999999 887664 5677777765 4566666665543
No 184
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.81 E-value=12 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=19.2
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
+..+||.|.|||.+.++ +.|.++|...
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~ 49 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARF 49 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 35689999999998654 4555666554
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=49.29 E-value=9.4 Score=31.72 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=25.0
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcc--eeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHY--LTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v--~~v~i~~d 237 (305)
+..+||.|.|+|.+.++ +.|+++|++. |.| .++.+..|
T Consensus 121 ~p~~~l~v~NLp~~~t~---~~L~~~F~~~--G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTE---ENFFEICDEL--GVKRPTSVKVFSG 160 (205)
T ss_dssp CCCSEEEEEEECTTCCH---HHHHHHHHHH--TCCCCSEEEECSC
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHHhc--CCcceEEEEEEcC
Confidence 45679999999998653 4556666554 234 56666555
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=48.72 E-value=17 Score=31.07 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...+|.|.|+|...++ +.|.++|... |.|.++.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeC
Confidence 3569999999998654 5677788765 46778888777
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=48.14 E-value=16 Score=30.43 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCC-cceeEEeEc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~-~v~~v~i~~ 236 (305)
+..+||.|.|+|.+.++ +.|.++|+.. | .|.++.+..
T Consensus 149 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp CSCSEEEEECCCTTCCH---HHHHHHHHTT--SCCEEEEEECS
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHHc--CCCeeEEEEEE
Confidence 34689999999998654 5677777765 5 577777644
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=47.41 E-value=21 Score=30.66 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCCC-chhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 195 PDQFTVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~-~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
...++|.|.|+|.+. ++ +.|.++|+.. |.|.++.+.+|
T Consensus 182 ~~~~~l~v~nlp~~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 220 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDV---DALCRALSAV--HSPTFCQLACG 220 (284)
T ss_dssp TSCSEEEEECCCTTCCCH---HHHHHHTCSS--SCCSEEEEEEC
T ss_pred CCccEEEEecCCcccCCH---HHHHHHhhCC--CCeEEEEEEEC
Confidence 456799999999984 53 6788888775 45777777776
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=45.93 E-value=19 Score=30.97 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCcceEEEEecCCCCCc------hhHHHHHHHhccccCCCcceeEEeEc
Q 021948 194 RPDQFTVLVRNVPPDPD------ESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~------~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
....+||.|.|||.+.+ +...+.|.++|++. |.|+++.++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 34578999999998642 12357788888876 6688888775
No 190
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.90 E-value=14 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.437 Sum_probs=17.2
Q ss_pred cceEEEEecCCCCCc-hhHHHHHHHh
Q 021948 196 DQFTVLVRNVPPDPD-ESVTQLVEHF 220 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~-~~l~~~l~~~ 220 (305)
..++|.|.|||.+.+ +.|++.+.+|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~ 41 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL 41 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 568999999999865 3344444443
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=45.74 E-value=17 Score=26.75 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred CcceEEEEecC--CCCCc-----hhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 195 PDQFTVLVRNV--PPDPD-----ESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~I--P~~~~-----~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
..++.|.+.|+ |.+.. +.+.+.|++.|++. |.|.++.+++|-.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 34679999998 54432 24667788888765 6788998887753
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=45.59 E-value=14 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred cceEEEEecCCCC-CchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP~~-~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
..++|.|.|+|.+ .++ +.|.++|+.. |.|.++.+.+|-
T Consensus 209 ~~~~l~v~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~~~ 247 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDE---NLLRESFEGF--GSIEKINIPAGQ 247 (292)
T ss_dssp TTTEEEEEEECTTTCCH---HHHHHHHGGG--SCEEEEECCSCC
T ss_pred CCceEEEECCCcccCCH---HHHHHHHhcc--CCeeEEEEEecC
Confidence 4579999999998 764 5677788765 567778777664
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=42.17 E-value=13 Score=29.72 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=17.0
Q ss_pred cceEEEEecCCCCCchhHHHHHHHhccc
Q 021948 196 DQFTVLVRNVPPDPDESVTQLVEHFFLV 223 (305)
Q Consensus 196 ~~~Tvlv~~IP~~~~~~l~~~l~~~F~~ 223 (305)
.++||.|.|||.+.++ +.|.++|+.
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~ 27 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNA 27 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHH
Confidence 4689999999998653 344555544
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=40.59 E-value=20 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCcceEEEEecCCCCCc-hhHHHHHHHhccc
Q 021948 194 RPDQFTVLVRNVPPDPD-ESVTQLVEHFFLV 223 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~-~~l~~~l~~~F~~ 223 (305)
....+||.|.|||.+.+ +.|++.+.+++..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~ 40 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAK 40 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 34578999999999854 5577777777643
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.35 E-value=54 Score=23.79 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCCCc--------hhHHHHHHHhccccCCCcceeEEe
Q 021948 195 PDQFTVLVRNVPPDPD--------ESVTQLVEHFFLVNHPDHYLTHQV 234 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~--------~~l~~~l~~~F~~~~p~~v~~v~i 234 (305)
..++||.|.|+....+ +.+++.|+++|.+. |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 4578999999944211 23568899999876 56778755
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.28 E-value=54 Score=24.87 Aligned_cols=36 Identities=3% Similarity=-0.135 Sum_probs=25.5
Q ss_pred cceEE--EEecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 196 DQFTV--LVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 196 ~~~Tv--lv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
.+.++ .|.|+|...++ +.|.++|+.. |.|.++.+..
T Consensus 22 ps~vl~l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp CCSEEEEEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcEEEEEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 34454 47999987664 5688888775 5688887754
No 197
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.45 E-value=17 Score=27.41 Aligned_cols=37 Identities=3% Similarity=-0.156 Sum_probs=24.7
Q ss_pred CcceEEEE--ecCCCCCchhHHHHHHHhccccCCCcceeEEeEc
Q 021948 195 PDQFTVLV--RNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 236 (305)
Q Consensus 195 ~~~~Tvlv--~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~ 236 (305)
...+++.| -|+|.+.++ +.|+++|++. |.|.++.+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te---~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSR---NQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCCH---HHHHHHHHHH--SCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCCH---HHHHHHHHhc--CCeEEEEEeC
Confidence 34579999 559987654 4566666655 4577777654
No 198
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=37.25 E-value=28 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=20.9
Q ss_pred CCcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 194 RPDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
.....||.|.|||.+.++ +.|.++|...
T Consensus 42 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~ 69 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE---KDLKYIFGRY 69 (143)
T ss_dssp CSCCSEEEEEEECTTCCH---HHHHHHHGGG
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 345679999999998664 4567777665
No 199
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=36.02 E-value=43 Score=25.81 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
-.|.|.|+|...++ +.|.++|++. |.|.+|.+..+
T Consensus 29 L~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 29 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcC
Confidence 36669999987664 5678888775 56888877654
No 200
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.47 E-value=43 Score=24.91 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.1
Q ss_pred eEEEEecCCCC--CchhHHHHHHHhccccCC
Q 021948 198 FTVLVRNVPPD--PDESVTQLVEHFFLVNHP 226 (305)
Q Consensus 198 ~Tvlv~~IP~~--~~~~l~~~l~~~F~~~~p 226 (305)
.|+.++|+|.+ ..+.+++.+++.|...-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~ 36 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDK 36 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCc
Confidence 49999999886 345678899999988655
No 201
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=33.19 E-value=34 Score=27.58 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.3
Q ss_pred eEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeEcc
Q 021948 198 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 237 (305)
Q Consensus 198 ~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~~d 237 (305)
.+|.|.|+|.+.++ +.|+++|+.. |.|.++.+..+
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~~k 81 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 81 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEEES
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 46789999987664 4567777665 66888887543
No 202
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.89 E-value=38 Score=18.20 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=12.8
Q ss_pred ccHHHH----HHHHHHHHHHhhcc
Q 021948 284 VDAIDF----YTSKIETLKKEVSG 303 (305)
Q Consensus 284 vDai~y----y~~~l~~l~~~i~~ 303 (305)
+||.++ +++++..|..+|..
T Consensus 2 idalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHH
Confidence 466654 46677777777754
No 203
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=28.65 E-value=69 Score=18.34 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=15.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHH
Q 021948 1 MATLGDIGVAATINILSAFAFL 22 (305)
Q Consensus 1 ~~~~~~~~t~l~~~~~i~~~~l 22 (305)
|+|.+.+..+|.++++-++..+
T Consensus 2 ~Isd~Qi~iAL~~Al~~~iLA~ 23 (31)
T 1jb0_M 2 ALTDTQVYVALVIALLPAVLAF 23 (31)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887777665543
No 204
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.89 E-value=68 Score=19.92 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcC
Q 021948 19 FAFLSAFAILRIQ 31 (305)
Q Consensus 19 ~~~l~lF~~lR~~ 31 (305)
++.++.|.++|++
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4556677888875
No 205
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.05 E-value=76 Score=19.68 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcC
Q 021948 19 FAFLSAFAILRIQ 31 (305)
Q Consensus 19 ~~~l~lF~~lR~~ 31 (305)
++.++.|.++|++
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4556677788875
No 206
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=24.97 E-value=49 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=21.2
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhcccc
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 224 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~ 224 (305)
...++|.|.|+|.+.++ +.|.++|+..
T Consensus 97 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~ 123 (175)
T 1fje_B 97 RAARTLLAKNLSFNITE---DELKEVFEDA 123 (175)
T ss_dssp GGGGEEEEESCCSSCCH---HHHHHHCTTC
T ss_pred ccCCEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 45689999999998664 5678888764
No 207
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=23.21 E-value=29 Score=19.40 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=10.4
Q ss_pred CCCCCccccCCcCC
Q 021948 266 PARKPSTKTGFLGL 279 (305)
Q Consensus 266 ~~~rP~~r~~~~~~ 279 (305)
+..||-||.++.|+
T Consensus 10 pndrpghrtccigl 23 (33)
T 2ll1_A 10 PNDRPGHRTCCIGL 23 (33)
T ss_dssp TTCBTTBCSBCTTE
T ss_pred CCCCCCceeeEEee
Confidence 35689999887664
No 208
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=22.18 E-value=58 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHHHHHhhcccC
Q 021948 283 TVDAIDFYTSKIETLKKEVSGFS 305 (305)
Q Consensus 283 kvDai~yy~~~l~~l~~~i~~~~ 305 (305)
+.|-+.-+++.|++|+.|++++|
T Consensus 25 RfdEV~~L~~NL~EL~~E~~~~~ 47 (48)
T 3v1a_A 25 RMDEVRTLQENLHQLMHEYFQQS 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHhhc
Confidence 44778889999999999999876
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.45 E-value=1.2e+02 Score=21.89 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCcceEEEEecCCC----C-CchhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 194 RPDQFTVLVRNVPP----D-PDESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 194 ~~~~~Tvlv~~IP~----~-~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.|..=||+|.-.|. + .++.|...+.+.|.++ |.|.++.++.|-
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 45666999999884 1 3566777788888775 467777777655
No 210
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.14 E-value=1.4e+02 Score=20.67 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=22.9
Q ss_pred CcceEEEEecCCCCCchhHHHHHHHhccccCCCcceeEEeE
Q 021948 195 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 235 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~~~~~l~~~l~~~F~~~~p~~v~~v~i~ 235 (305)
...+||.|.|+ +.+ .+.|+++|+.. |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t---~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT---PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC---HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC---HHHHHHHHhhC--CCEEEEEec
Confidence 35679999995 433 35677888765 457777664
No 211
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=21.09 E-value=49 Score=21.09 Aligned_cols=18 Identities=6% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhccc
Q 021948 287 IDFYTSKIETLKKEVSGF 304 (305)
Q Consensus 287 i~yy~~~l~~l~~~i~~~ 304 (305)
..+|.+++.+++.|++++
T Consensus 27 EqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 27 EKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 348999999999998765
No 212
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=20.96 E-value=1.2e+02 Score=22.35 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=29.6
Q ss_pred cceEEEEecCC--CCC-----chhHHHHHHHhccccCCCcceeEEeEccc
Q 021948 196 DQFTVLVRNVP--PDP-----DESVTQLVEHFFLVNHPDHYLTHQVVNNA 238 (305)
Q Consensus 196 ~~~Tvlv~~IP--~~~-----~~~l~~~l~~~F~~~~p~~v~~v~i~~d~ 238 (305)
.++.|.+.|+= .+. .+.+++.|.+.|++. |.|.++.+.++.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 45789999983 331 246778888888765 668888887764
No 213
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.49 E-value=90 Score=23.67 Aligned_cols=40 Identities=10% Similarity=-0.065 Sum_probs=28.2
Q ss_pred CcceEEEEecCCCC-CchhHHHHHHHhccccCCCcceeEEeEcccc
Q 021948 195 PDQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVNNAN 239 (305)
Q Consensus 195 ~~~~Tvlv~~IP~~-~~~~l~~~l~~~F~~~~p~~v~~v~i~~d~~ 239 (305)
+...-|.|.|+|.+ .. ++.|++.|++. |.|..|.+.+|-.
T Consensus 16 ~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTCS
T ss_pred cCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCCC
Confidence 45568999999998 55 46778888774 3566666655544
Done!