BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021949
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT 66
L++ L+SAK L+D ++ MD Y + T + Q KS+V G+ P WN FT
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQL------TCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 67 FNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELL 105
++ + D + ++ D VGE +P++ +
Sbjct: 66 VSEGTTELKAKIFDKDVGTE----DDAVGEATIPLEPVF 100
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 39 TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVI 98
T+K Q VKS GS P+W F N+ L L ++ + GL+ D VG V
Sbjct: 28 TLKVQNVKSTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLIWDTMVGTVW 82
Query: 99 VPIKEL 104
+P++ +
Sbjct: 83 IPLRTI 88
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 39 TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVI 98
T+K Q V+S GS P+W F N+ L L ++ + GL+ D VG V
Sbjct: 37 TLKVQNVESTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLIWDTMVGTVW 91
Query: 99 VPIKEL 104
+P++ +
Sbjct: 92 IPLRTI 97
>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3F5Q|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3GZ4|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
pdb|3GZ4|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
Length = 262
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 30 AVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----QSLAQQ---NRLTLDFK 82
A V + G + K ++V SH++ G P W T Q LAQ+ N LD
Sbjct: 39 ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSEDCQQLAQRIAVNYPRLDGV 98
Query: 83 IKSDGLLGDKTVGEVIVPIKE 103
+ + GLLGD + P+ E
Sbjct: 99 LHNAGLLGD------VCPMSE 113
>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
pdb|3F1L|B Chain B, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
Length = 252
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 30 AVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----QSLAQQ---NRLTLDFK 82
A V + G + K ++V SH++ G P W T Q LAQ+ N LD
Sbjct: 37 ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGV 96
Query: 83 IKSDGLLGDKTVGEVIVPIKE 103
+ + GLLGD + P+ E
Sbjct: 97 LHNAGLLGD------VCPMSE 111
>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3F5S|B Chain B, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3GY0|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301 Complexed With Nadp
Length = 255
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 30 AVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----QSLAQQ---NRLTLDFK 82
A V + G + K ++V SH++ G P W T Q LAQ+ N LD
Sbjct: 35 ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGV 94
Query: 83 IKSDGLLGDKTVGEVIVPIKE 103
+ + GLLGD + P+ E
Sbjct: 95 LHNAGLLGD------VCPMSE 109
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 14 AKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNP 57
A+HL+DV ++ +V++SG HT+ +S DRSG P
Sbjct: 139 AQHLRDVFYRMGLNDKEIVALSGAHTLG----RSRPDRSGWGKP 178
>pdb|3F1K|A Chain A, Crystal Structure Of Ycik From E. Coli, An Oxidoreductase,
Complexed With Nadp+ At 2.6a Resolution
Length = 252
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 30 AVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----QSLAQQ---NRLTLDFK 82
A V + G + K ++V SH++ G P W T Q LAQ+ N LD
Sbjct: 37 ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGV 96
Query: 83 IKSDGLLGD 91
+ + GLLGD
Sbjct: 97 LHNAGLLGD 105
>pdb|3E9Q|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase From
Shigella Flexneri
pdb|3E9Q|B Chain B, Crystal Structure Of The Short Chain Dehydrogenase From
Shigella Flexneri
Length = 273
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 30 AVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----QSLAQQ---NRLTLDFK 82
A V + G + K ++V SH++ G P W T Q LAQ+ N LD
Sbjct: 58 ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGV 117
Query: 83 IKSDGLLGD 91
+ + GLLGD
Sbjct: 118 LHNAGLLGD 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,170,154
Number of Sequences: 62578
Number of extensions: 180015
Number of successful extensions: 261
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 9
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)