Query 021949
Match_columns 305
No_of_seqs 368 out of 1800
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.5E-23 5.3E-28 167.5 14.4 117 5-143 2-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 1.3E-21 2.8E-26 158.1 12.9 124 6-139 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.9 1.2E-21 2.7E-26 156.5 12.5 118 5-143 1-118 (118)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 1E-20 2.2E-25 152.1 15.1 119 6-145 1-121 (121)
5 cd04022 C2A_MCTP_PRT_plant C2 99.9 9.2E-21 2E-25 153.7 14.3 123 6-145 1-127 (127)
6 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.8E-20 3.9E-25 156.5 14.6 127 6-148 1-136 (150)
7 cd08682 C2_Rab11-FIP_classI C2 99.9 1.2E-20 2.6E-25 152.8 13.1 121 7-142 1-126 (126)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 2.5E-20 5.5E-25 152.0 15.1 129 6-144 1-133 (133)
9 cd04046 C2_Calpain C2 domain p 99.8 8.2E-20 1.8E-24 148.1 15.3 119 4-146 2-124 (126)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.2E-20 1.1E-24 149.1 13.6 112 6-139 1-125 (126)
11 cd04015 C2_plant_PLD C2 domain 99.8 1.2E-19 2.7E-24 152.8 15.0 120 4-144 6-158 (158)
12 cd08678 C2_C21orf25-like C2 do 99.8 2E-19 4.2E-24 145.7 15.2 119 7-147 1-123 (126)
13 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.4E-19 3.1E-24 144.6 14.2 115 5-143 1-118 (119)
14 cd04036 C2_cPLA2 C2 domain pre 99.8 1.5E-19 3.1E-24 144.9 14.1 117 7-144 2-118 (119)
15 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.8E-20 2.1E-24 146.7 13.1 118 7-144 2-120 (121)
16 cd08375 C2_Intersectin C2 doma 99.8 2.4E-19 5.2E-24 147.3 14.7 122 3-143 13-135 (136)
17 cd04044 C2A_Tricalbin-like C2 99.8 2.4E-19 5.2E-24 144.1 13.3 121 5-145 2-124 (124)
18 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.7E-19 1E-23 143.7 15.0 119 4-146 3-125 (126)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.1E-19 4.4E-24 144.8 12.8 116 6-142 1-123 (123)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.1E-19 8.9E-24 143.0 14.5 117 6-143 1-121 (121)
21 cd08376 C2B_MCTP_PRT C2 domain 99.8 6E-19 1.3E-23 140.5 14.5 114 6-144 1-115 (116)
22 KOG1030 Predicted Ca2+-depende 99.8 2.1E-19 4.5E-24 149.1 10.6 95 2-108 3-98 (168)
23 cd08381 C2B_PI3K_class_II C2 d 99.8 4.5E-19 9.8E-24 143.0 12.3 99 4-107 12-112 (122)
24 cd08395 C2C_Munc13 C2 domain t 99.8 7.8E-19 1.7E-23 141.0 13.3 110 6-128 1-112 (120)
25 cd04024 C2A_Synaptotagmin-like 99.8 8.8E-19 1.9E-23 141.7 13.5 121 5-143 1-128 (128)
26 cd08382 C2_Smurf-like C2 domai 99.8 9.2E-19 2E-23 141.3 13.1 116 6-142 1-123 (123)
27 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.4E-18 2.9E-23 139.9 13.8 117 6-142 1-120 (121)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.8E-23 139.3 13.3 115 5-143 1-121 (121)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 9.2E-19 2E-23 139.5 11.3 95 3-105 12-107 (118)
30 cd04010 C2B_RasA3 C2 domain se 99.8 1.5E-18 3.2E-23 144.5 12.6 111 6-129 1-123 (148)
31 cd08373 C2A_Ferlin C2 domain f 99.8 3.8E-18 8.3E-23 138.2 14.7 118 11-149 2-121 (127)
32 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.3E-18 5E-23 140.0 12.9 113 3-126 13-127 (128)
33 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.1E-18 4.7E-23 139.6 12.2 100 3-106 13-114 (125)
34 cd04014 C2_PKC_epsilon C2 doma 99.8 6.1E-18 1.3E-22 138.0 14.8 117 4-145 3-130 (132)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 5.2E-18 1.1E-22 140.6 14.0 109 4-129 28-139 (146)
36 cd08680 C2_Kibra C2 domain fou 99.8 2.3E-18 5.1E-23 139.1 11.5 101 3-106 12-113 (124)
37 cd04049 C2_putative_Elicitor-r 99.8 4.6E-18 9.9E-23 137.1 12.6 97 5-108 1-98 (124)
38 cd04029 C2A_SLP-4_5 C2 domain 99.8 5.8E-18 1.3E-22 137.1 13.1 102 3-108 13-116 (125)
39 cd04039 C2_PSD C2 domain prese 99.8 6.3E-18 1.4E-22 133.4 12.0 94 5-108 1-99 (108)
40 cd04040 C2D_Tricalbin-like C2 99.8 9.1E-18 2E-22 133.4 13.1 113 7-139 1-114 (115)
41 cd08685 C2_RGS-like C2 domain 99.8 5.1E-18 1.1E-22 136.3 11.7 98 3-106 10-109 (119)
42 cd04027 C2B_Munc13 C2 domain s 99.8 9.8E-18 2.1E-22 136.0 13.2 112 6-141 2-127 (127)
43 cd04017 C2D_Ferlin C2 domain f 99.8 2E-17 4.3E-22 135.6 15.1 126 6-146 2-134 (135)
44 cd08385 C2A_Synaptotagmin-1-5- 99.8 9.4E-18 2E-22 135.3 12.8 109 3-127 14-123 (124)
45 cd08394 C2A_Munc13 C2 domain f 99.8 1E-17 2.2E-22 134.9 12.4 100 5-128 2-101 (127)
46 cd04041 C2A_fungal C2 domain f 99.8 5.7E-18 1.2E-22 134.2 10.8 97 5-106 1-99 (111)
47 cd08690 C2_Freud-1 C2 domain f 99.8 3E-17 6.5E-22 137.2 15.6 133 6-150 3-143 (155)
48 cd04021 C2_E3_ubiquitin_ligase 99.8 2.4E-17 5.2E-22 133.4 14.6 119 5-141 2-124 (125)
49 cd04043 C2_Munc13_fungal C2 do 99.8 3.7E-17 8E-22 132.1 15.4 121 6-146 2-123 (126)
50 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.4E-17 3.1E-22 134.2 12.9 109 3-127 14-123 (124)
51 cd00275 C2_PLC_like C2 domain 99.8 5.5E-17 1.2E-21 131.1 15.8 122 5-143 2-127 (128)
52 cd04050 C2B_Synaptotagmin-like 99.7 1.3E-17 2.8E-22 130.8 11.6 101 7-128 2-102 (105)
53 cd08388 C2A_Synaptotagmin-4-11 99.7 2.6E-17 5.6E-22 133.8 13.7 99 3-107 14-115 (128)
54 cd08691 C2_NEDL1-like C2 domai 99.7 4.5E-17 9.8E-22 133.8 15.2 121 6-141 2-136 (137)
55 cd04030 C2C_KIAA1228 C2 domain 99.7 2.5E-17 5.5E-22 133.1 13.2 110 3-126 14-126 (127)
56 cd04011 C2B_Ferlin C2 domain s 99.7 2.5E-17 5.3E-22 130.4 12.4 106 5-128 4-110 (111)
57 cd08521 C2A_SLP C2 domain firs 99.7 2.5E-17 5.4E-22 132.3 12.6 100 3-106 12-113 (123)
58 cd04045 C2C_Tricalbin-like C2 99.7 2.4E-17 5.1E-22 132.6 12.3 104 5-130 1-105 (120)
59 cd08688 C2_KIAA0528-like C2 do 99.7 2.8E-17 6.2E-22 130.0 10.9 106 7-128 1-109 (110)
60 cd04031 C2A_RIM1alpha C2 domai 99.7 4.6E-17 9.9E-22 131.2 12.1 99 3-105 14-114 (125)
61 cd04009 C2B_Munc13-like C2 dom 99.7 3.4E-17 7.4E-22 133.9 11.5 102 4-106 15-118 (133)
62 cd08386 C2A_Synaptotagmin-7 C2 99.7 8.7E-17 1.9E-21 129.7 13.0 110 3-127 14-124 (125)
63 cd08389 C2A_Synaptotagmin-14_1 99.7 6E-17 1.3E-21 130.9 12.1 108 3-127 14-123 (124)
64 cd08390 C2A_Synaptotagmin-15-1 99.7 1.7E-16 3.6E-21 127.6 13.5 109 3-127 12-122 (123)
65 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.7E-16 3.6E-21 134.2 12.4 101 3-106 25-126 (162)
66 cd04038 C2_ArfGAP C2 domain pr 99.7 3.2E-16 6.8E-21 130.1 13.8 91 5-108 2-93 (145)
67 cd04018 C2C_Ferlin C2 domain t 99.7 1.8E-16 3.9E-21 132.3 12.1 108 6-128 1-125 (151)
68 PLN03008 Phospholipase D delta 99.7 2.5E-16 5.5E-21 158.7 14.5 125 4-149 13-182 (868)
69 cd08384 C2B_Rabphilin_Doc2 C2 99.7 9.2E-17 2E-21 131.1 9.3 97 3-103 11-108 (133)
70 cd04032 C2_Perforin C2 domain 99.7 2E-16 4.4E-21 128.3 10.7 92 3-105 26-118 (127)
71 cd08407 C2B_Synaptotagmin-13 C 99.7 2.4E-16 5.3E-21 129.6 11.1 97 3-103 13-112 (138)
72 cd08406 C2B_Synaptotagmin-12 C 99.7 2.6E-16 5.6E-21 129.3 11.3 96 4-103 14-110 (136)
73 cd08404 C2B_Synaptotagmin-4 C2 99.7 9.8E-17 2.1E-21 131.6 8.4 97 3-103 13-110 (136)
74 cd04052 C2B_Tricalbin-like C2 99.7 3.3E-16 7.1E-21 124.1 11.1 102 22-145 9-110 (111)
75 cd08675 C2B_RasGAP C2 domain s 99.7 3.5E-16 7.5E-21 128.7 11.4 110 7-130 1-122 (137)
76 cd08408 C2B_Synaptotagmin-14_1 99.7 4E-16 8.7E-21 128.5 11.4 99 3-104 13-112 (138)
77 cd08383 C2A_RasGAP C2 domain ( 99.7 1.1E-15 2.3E-20 121.7 12.7 113 7-143 2-117 (117)
78 cd04026 C2_PKC_alpha_gamma C2 99.7 7.5E-16 1.6E-20 125.4 12.0 108 5-128 13-121 (131)
79 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.3E-15 2.8E-20 122.6 13.2 102 3-108 13-115 (123)
80 cd08402 C2B_Synaptotagmin-1 C2 99.7 6.6E-16 1.4E-20 126.6 11.4 98 3-104 13-111 (136)
81 cd08676 C2A_Munc13-like C2 dom 99.7 6.3E-16 1.4E-20 129.2 11.5 96 3-106 26-144 (153)
82 cd04037 C2E_Ferlin C2 domain f 99.7 3.7E-16 8E-21 126.3 9.6 92 6-106 1-93 (124)
83 cd08405 C2B_Synaptotagmin-7 C2 99.7 6.4E-16 1.4E-20 126.7 10.9 98 3-104 13-111 (136)
84 cd04048 C2A_Copine C2 domain f 99.7 1.9E-15 4.1E-20 121.2 12.9 103 10-127 5-113 (120)
85 cd08403 C2B_Synaptotagmin-3-5- 99.7 9.8E-16 2.1E-20 125.3 11.1 96 3-102 12-108 (134)
86 cd04013 C2_SynGAP_like C2 doma 99.6 4.3E-15 9.3E-20 123.0 14.2 117 5-147 11-142 (146)
87 cd08410 C2B_Synaptotagmin-17 C 99.6 1.7E-15 3.7E-20 124.2 11.7 95 3-101 12-107 (135)
88 cd00276 C2B_Synaptotagmin C2 d 99.6 4.3E-16 9.4E-21 126.8 8.1 97 3-103 12-109 (134)
89 cd08692 C2B_Tac2-N C2 domain s 99.6 2E-15 4.3E-20 123.1 11.5 98 3-104 12-110 (135)
90 cd08686 C2_ABR C2 domain in th 99.6 5.4E-15 1.2E-19 117.6 13.2 84 7-103 1-92 (118)
91 cd08409 C2B_Synaptotagmin-15 C 99.6 2E-15 4.4E-20 124.1 10.9 97 3-104 13-110 (137)
92 cd04047 C2B_Copine C2 domain s 99.6 5.3E-15 1.2E-19 116.6 11.9 97 8-106 3-100 (110)
93 PLN03200 cellulose synthase-in 99.6 2E-15 4.4E-20 164.3 12.0 121 4-146 1979-2102(2102)
94 KOG1028 Ca2+-dependent phospho 99.6 6.7E-15 1.4E-19 141.9 14.3 129 3-147 165-297 (421)
95 KOG0696 Serine/threonine prote 99.6 4.7E-16 1E-20 145.1 4.2 109 4-128 179-288 (683)
96 PF00168 C2: C2 domain; Inter 99.5 1.1E-13 2.4E-18 102.7 10.1 84 7-98 1-85 (85)
97 KOG1011 Neurotransmitter relea 99.4 2E-13 4.3E-18 132.4 8.0 118 5-146 295-426 (1283)
98 PLN02223 phosphoinositide phos 99.4 1.9E-12 4E-17 126.1 14.7 120 5-143 409-536 (537)
99 PLN02270 phospholipase D alpha 99.4 2.6E-12 5.7E-17 129.8 14.4 126 3-148 6-152 (808)
100 PLN02952 phosphoinositide phos 99.4 6E-12 1.3E-16 124.8 14.8 122 4-144 469-597 (599)
101 KOG2059 Ras GTPase-activating 99.4 2.1E-12 4.6E-17 126.6 10.2 128 1-149 1-130 (800)
102 smart00239 C2 Protein kinase C 99.4 8.9E-12 1.9E-16 94.5 11.4 94 6-107 1-95 (101)
103 cd08374 C2F_Ferlin C2 domain s 99.4 4.8E-12 1E-16 103.1 10.1 97 6-106 1-123 (133)
104 COG5038 Ca2+-dependent lipid-b 99.3 6.6E-12 1.4E-16 129.1 11.9 128 3-151 434-564 (1227)
105 KOG0169 Phosphoinositide-speci 99.3 1.2E-11 2.6E-16 123.0 12.4 122 6-145 617-745 (746)
106 cd00030 C2 C2 domain. The C2 d 99.3 1.8E-11 3.9E-16 92.2 10.6 89 7-105 1-90 (102)
107 PLN02230 phosphoinositide phos 99.3 2.4E-11 5.1E-16 120.4 13.9 121 4-143 468-597 (598)
108 PLN02228 Phosphoinositide phos 99.3 5.1E-11 1.1E-15 117.6 15.3 124 5-147 431-564 (567)
109 PLN02222 phosphoinositide phos 99.3 5.9E-11 1.3E-15 117.4 14.8 121 4-143 451-580 (581)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.1E-11 2.3E-16 95.9 7.4 85 7-106 1-88 (109)
111 KOG1028 Ca2+-dependent phospho 99.3 2.3E-11 5E-16 117.4 10.7 97 3-103 296-393 (421)
112 COG5038 Ca2+-dependent lipid-b 99.2 7.9E-11 1.7E-15 121.3 9.7 126 3-148 1038-1165(1227)
113 KOG1264 Phospholipase C [Lipid 99.0 1.6E-09 3.5E-14 107.9 11.7 126 5-149 1065-1194(1267)
114 KOG1328 Synaptic vesicle prote 99.0 1.1E-10 2.4E-15 114.9 1.2 129 7-149 116-306 (1103)
115 KOG1031 Predicted Ca2+-depende 99.0 1.6E-09 3.4E-14 104.7 9.0 130 4-143 2-135 (1169)
116 KOG1328 Synaptic vesicle prote 98.9 3.6E-10 7.8E-15 111.4 2.3 102 3-105 945-1048(1103)
117 PLN02352 phospholipase D epsil 98.9 1.1E-08 2.4E-13 103.6 12.3 120 4-149 9-135 (758)
118 KOG3837 Uncharacterized conser 98.6 1.7E-08 3.8E-13 94.2 3.7 133 5-149 367-508 (523)
119 KOG0905 Phosphoinositide 3-kin 98.6 3.8E-08 8.2E-13 101.6 4.9 112 3-128 1522-1635(1639)
120 KOG2059 Ras GTPase-activating 98.5 1.9E-07 4E-12 92.4 7.4 113 23-148 148-280 (800)
121 cd08683 C2_C2cd3 C2 domain fou 98.5 4.4E-07 9.5E-12 72.6 6.7 99 7-108 1-134 (143)
122 KOG1013 Synaptic vesicle prote 98.4 3.2E-08 6.9E-13 90.3 -0.5 136 3-148 91-233 (362)
123 KOG1011 Neurotransmitter relea 98.3 2E-06 4.4E-11 84.5 9.5 111 5-128 1125-1237(1283)
124 KOG1327 Copine [Signal transdu 98.2 2.7E-06 5.9E-11 82.9 7.5 94 11-106 142-236 (529)
125 KOG1013 Synaptic vesicle prote 98.1 3.6E-06 7.7E-11 77.1 5.7 93 4-100 232-325 (362)
126 KOG1265 Phospholipase C [Lipid 98.0 3.2E-05 7E-10 78.6 9.0 116 5-144 703-823 (1189)
127 KOG1326 Membrane-associated pr 97.9 8.3E-06 1.8E-10 83.7 3.4 92 5-105 613-705 (1105)
128 cd08684 C2A_Tac2-N C2 domain f 97.9 2.7E-05 5.8E-10 58.4 4.9 90 8-106 2-94 (103)
129 PLN02964 phosphatidylserine de 97.8 3E-05 6.6E-10 78.3 6.4 85 5-107 54-140 (644)
130 PF15627 CEP76-C2: CEP76 C2 do 97.7 0.00064 1.4E-08 56.7 12.0 132 4-148 8-154 (156)
131 PF10358 NT-C2: N-terminal C2 97.7 0.0031 6.8E-08 51.6 15.0 129 4-148 6-139 (143)
132 cd08398 C2_PI3K_class_I_alpha 97.4 0.0037 8.1E-08 52.5 12.1 95 4-104 7-106 (158)
133 cd08687 C2_PKN-like C2 domain 97.3 0.002 4.4E-08 48.6 8.7 85 25-143 8-92 (98)
134 KOG2060 Rab3 effector RIM1 and 97.2 0.00043 9.4E-09 64.7 4.9 113 1-129 265-380 (405)
135 PF12416 DUF3668: Cep120 prote 97.2 0.0083 1.8E-07 56.5 13.0 125 7-149 2-137 (340)
136 KOG1924 RhoA GTPase effector D 97.1 0.0044 9.6E-08 62.8 10.4 15 54-68 441-455 (1102)
137 cd08693 C2_PI3K_class_I_beta_d 97.1 0.0037 7.9E-08 53.4 8.7 80 4-87 7-86 (173)
138 cd08380 C2_PI3K_like C2 domain 97.0 0.0045 9.8E-08 51.7 8.5 97 5-104 8-107 (156)
139 PF11618 DUF3250: Protein of u 96.9 0.0057 1.2E-07 48.0 8.1 101 29-144 2-105 (107)
140 cd08399 C2_PI3K_class_I_gamma 96.6 0.028 6E-07 48.2 10.7 79 5-87 10-88 (178)
141 KOG1326 Membrane-associated pr 96.6 0.00066 1.4E-08 70.1 0.4 118 7-143 208-331 (1105)
142 PF14429 DOCK-C2: C2 domain in 96.5 0.052 1.1E-06 46.6 11.7 96 4-103 6-120 (184)
143 cd04012 C2A_PI3K_class_II C2 d 96.4 0.012 2.7E-07 50.0 7.4 98 5-103 8-118 (171)
144 KOG1924 RhoA GTPase effector D 96.4 0.016 3.5E-07 58.9 9.1 8 98-105 453-460 (1102)
145 cd08694 C2_Dock-A C2 domains f 96.4 0.049 1.1E-06 47.2 11.0 58 42-102 52-114 (196)
146 cd08695 C2_Dock-B C2 domains f 96.4 0.051 1.1E-06 46.9 11.0 59 42-103 52-113 (189)
147 cd08397 C2_PI3K_class_III C2 d 96.3 0.015 3.3E-07 48.9 6.9 79 24-104 28-107 (159)
148 KOG1452 Predicted Rho GTPase-a 96.2 0.012 2.5E-07 54.1 6.3 117 3-145 49-168 (442)
149 PF00792 PI3K_C2: Phosphoinosi 95.6 0.058 1.3E-06 44.3 7.4 77 27-104 3-85 (142)
150 smart00142 PI3K_C2 Phosphoinos 94.7 0.18 3.9E-06 38.8 7.4 79 7-87 13-91 (100)
151 PF15625 CC2D2AN-C2: CC2D2A N- 94.2 0.21 4.6E-06 42.3 7.4 73 24-106 35-108 (168)
152 cd08679 C2_DOCK180_related C2 94.1 0.85 1.8E-05 38.9 11.1 54 47-103 56-115 (178)
153 KOG1327 Copine [Signal transdu 93.6 0.2 4.3E-06 49.5 6.9 61 42-107 40-105 (529)
154 PF09849 DUF2076: Uncharacteri 90.9 0.68 1.5E-05 41.7 6.4 19 268-286 141-159 (247)
155 cd08697 C2_Dock-D C2 domains f 90.9 3.5 7.6E-05 35.5 10.5 59 42-103 55-123 (185)
156 cd08696 C2_Dock-C C2 domains f 90.8 0.78 1.7E-05 39.3 6.4 59 42-103 53-118 (179)
157 PF14909 SPATA6: Spermatogenes 90.6 2.2 4.7E-05 35.0 8.5 91 6-106 3-101 (140)
158 KOG3543 Ca2+-dependent activat 89.9 2 4.4E-05 43.3 9.1 80 6-100 342-425 (1218)
159 PF06219 DUF1005: Protein of u 89.7 7.1 0.00015 37.7 12.2 114 25-147 35-170 (460)
160 PF14186 Aida_C2: Cytoskeletal 88.1 1.7 3.6E-05 36.0 6.1 98 5-106 13-114 (147)
161 PTZ00447 apical membrane antig 87.8 6.1 0.00013 37.2 10.2 100 26-145 74-174 (508)
162 KOG1329 Phospholipase D1 [Lipi 87.6 0.83 1.8E-05 47.7 5.0 72 26-107 138-210 (887)
163 PF14924 DUF4497: Protein of u 86.3 0.63 1.4E-05 36.6 2.6 83 62-145 12-105 (112)
164 smart00157 PRP Major prion pro 80.9 5.2 0.00011 34.3 6.0 22 265-286 91-112 (217)
165 PF07162 B9-C2: Ciliary basal 78.4 39 0.00085 28.4 10.9 87 7-100 4-100 (168)
166 PF12734 CYSTM: Cysteine-rich 69.8 12 0.00026 23.4 4.1 16 271-286 19-34 (37)
167 PF12416 DUF3668: Cep120 prote 69.6 79 0.0017 30.0 11.5 94 4-108 191-297 (340)
168 KOG4269 Rac GTPase-activating 68.7 1.9 4.2E-05 45.0 0.6 71 4-87 758-828 (1112)
169 COG4395 Uncharacterized protei 66.5 7.1 0.00015 35.8 3.7 12 267-278 32-43 (281)
170 KOG0694 Serine/threonine prote 61.6 2.8 6.1E-05 42.8 0.2 53 25-89 27-79 (694)
171 KOG2419 Phosphatidylserine dec 56.7 2.9 6.3E-05 42.3 -0.6 36 24-67 303-338 (975)
172 smart00157 PRP Major prion pro 56.3 42 0.0009 28.9 6.2 23 267-289 89-111 (217)
173 PF09849 DUF2076: Uncharacteri 53.8 18 0.00039 32.7 3.9 24 264-287 141-164 (247)
174 COG4395 Uncharacterized protei 51.3 10 0.00022 34.8 1.9 22 259-281 28-49 (281)
175 KOG0904 Phosphatidylinositol 3 50.6 52 0.0011 35.0 7.0 77 5-86 343-421 (1076)
176 KOG0906 Phosphatidylinositol 3 48.8 21 0.00045 36.6 3.8 45 57-102 77-122 (843)
177 cd05137 RasGAP_CLA2_BUD2 CLA2/ 45.8 28 0.00062 33.6 4.2 44 93-146 1-46 (395)
178 KOG0132 RNA polymerase II C-te 41.4 2E+02 0.0043 30.4 9.4 16 91-106 506-521 (894)
179 PF15084 DUF4550: Domain of un 38.1 52 0.0011 25.3 3.8 37 51-87 46-83 (99)
180 PF05818 TraT: Enterobacterial 37.5 24 0.00053 31.1 2.2 24 264-288 109-132 (215)
181 PF12732 YtxH: YtxH-like prote 34.1 37 0.0008 24.3 2.3 16 266-281 4-19 (74)
182 KOG0905 Phosphoinositide 3-kin 34.0 52 0.0011 36.2 4.2 98 5-105 635-750 (1639)
183 PF10409 PTEN_C2: C2 domain of 33.1 2.4E+02 0.0053 22.2 12.7 92 5-105 4-98 (134)
184 PF08151 FerI: FerI (NUC094) d 33.0 81 0.0018 22.8 3.9 29 118-146 13-44 (72)
185 PRK10404 hypothetical protein; 32.6 28 0.00061 26.9 1.6 16 267-282 84-99 (101)
186 COG4575 ElaB Uncharacterized c 31.9 31 0.00067 26.8 1.7 17 266-282 86-102 (104)
187 COG3416 Uncharacterized protei 30.0 31 0.00068 30.2 1.5 16 270-285 144-159 (233)
188 PF05957 DUF883: Bacterial pro 27.0 43 0.00094 25.1 1.8 16 267-282 77-92 (94)
189 PF05660 DUF807: Coxiella burn 25.7 1.1E+02 0.0024 24.5 3.8 30 3-37 38-67 (142)
190 PF06682 DUF1183: Protein of u 24.5 2.2E+02 0.0048 26.7 6.2 21 264-284 251-271 (318)
191 TIGR03511 GldH_lipo gliding mo 24.1 3E+02 0.0065 22.9 6.4 33 56-89 35-69 (156)
192 KOG3063 Membrane coat complex 22.9 3.6E+02 0.0078 24.4 6.8 45 54-104 154-201 (301)
193 PRK13731 conjugal transfer sur 22.6 61 0.0013 29.1 2.1 21 266-287 141-161 (243)
194 PF14109 GldH_lipo: GldH lipop 21.2 4.3E+02 0.0094 21.1 6.8 32 57-89 14-47 (131)
195 PF01060 DUF290: Transthyretin 21.1 1.3E+02 0.0028 21.8 3.3 22 78-99 13-35 (80)
196 PRK10132 hypothetical protein; 20.8 68 0.0015 25.1 1.8 16 267-282 90-105 (108)
197 PRK11280 hypothetical protein; 20.1 86 0.0019 26.6 2.4 15 272-286 93-107 (170)
198 COG3105 Uncharacterized protei 20.0 86 0.0019 25.4 2.2 18 268-285 12-29 (138)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.91 E-value=2.5e-23 Score=167.45 Aligned_cols=117 Identities=18% Similarity=0.377 Sum_probs=98.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
++|+|+|++|++|++.+ ++++||||++++++ .++||+++++++.||+|||+|.|.+.... ..|.|+||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~~~-----~~l~~~V~ 69 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPEGV-----DSIYIEIF 69 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecCCC-----cEEEEEEE
Confidence 68999999999999887 89999999999976 67899999887899999999999996542 47999999
Q ss_pred ecCCC-CCcceeEEEEeCcc-cccccCCCCCCCCCcceEEEEEeecCCC-CCccEEEEEEEE
Q 021949 85 SDGLL-GDKTVGEVIVPIKE-LLDSSSSSSSGDAKSMKFVTYQVRSSSG-KPKGELHFSYKF 143 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~-l~~~~~~~~~~~g~~~~~~~~~l~~~~g-~~~G~l~lsl~~ 143 (305)
|++.+ +|++||++.|+|.+ +.... ....||.|...++ +..|.|+|+|+|
T Consensus 70 d~d~~~~dd~iG~~~i~l~~~~~~g~----------~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 70 DERAFTMDERIAWTHITIPESVFNGE----------TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eCCCCcCCceEEEEEEECchhccCCC----------CccccEeCcCccCCCCceEEEEEEeC
Confidence 99998 78999999999974 44321 2477888876544 468999999986
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.87 E-value=1.3e-21 Score=158.09 Aligned_cols=124 Identities=47% Similarity=0.815 Sum_probs=103.8
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
+|+|+|++|++|++.+.++++||||+|++.+ ..+++|+++++++.||.|||+|.|.+....+......|.|+|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence 5899999999999998889999999999976 25789999876689999999999999776422233689999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEE
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHF 139 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~l 139 (305)
++.+ .|++||++.|+|.+++... ..+ .+....||+|++++++.+|+|+|
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~----~~~-~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGA----SPA-GELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhccc----CCC-CcceeEEEEeECCCCCcCeEEeC
Confidence 9886 7899999999999999654 211 13457899999999999999986
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.87 E-value=1.2e-21 Score=156.51 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=99.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
++|+|+|++|++|++.+.++++||||+|++.+ .+.+|+++++++.||+|||+|.|.+.... ...|.|+||
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~~l~i~v~ 70 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDK----KPILKVAVF 70 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecCCC----CCEEEEEEE
Confidence 57999999999999999889999999999976 57788887665799999999999997642 258999999
Q ss_pred ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
|++..+|++||++.++|.++.... ....||.|.. +++..|+|+|+++|
T Consensus 71 d~~~~~~~~iG~~~~~l~~~~~~~----------~~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 71 DDDKRKPDLIGDTEVDLSPALKEG----------EFDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred eCCCCCCcceEEEEEecHHHhhcC----------CCCCcEEecc-CCcEeeEEEEEEEC
Confidence 998777899999999999987533 1356788875 45789999999986
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=1e-20 Score=152.12 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=101.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|...+.++++||||++++.+ ..+.+|+++++ +.||+|||+|.|.+.... ..|.|+|||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~-----~~l~~~v~D 69 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-----KTVYKSKTIYK-NLNPVWDEKFTLPIEDVT-----QPLYIKVFD 69 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-----EEEEEeeeccC-CCCCccceeEEEEecCCC-----CeEEEEEEe
Confidence 3899999999999988889999999999975 36789999887 899999999999986432 489999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC-CCCccEEEEEEEEec
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS-GKPKGELHFSYKFSE 145 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~-g~~~G~l~lsl~~~~ 145 (305)
++.+ +|++||++.++|.++.... ....|+.|...+ .+..|+|+|.++|.+
T Consensus 70 ~d~~~~~~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 70 YDRGLTDDFMGSAFVDLSTLELNK----------PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCCCCcceEEEEEEHHHcCCCC----------CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9988 8999999999999998533 246789998654 378999999999864
No 5
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=9.2e-21 Score=153.70 Aligned_cols=123 Identities=17% Similarity=0.292 Sum_probs=100.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
+|+|+|++|++|...+..+.+||||+|++.+ .++||+++++ +.||+|||+|.|.+..... ..+..|.|+|||
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d 72 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPK-DLNPVWNEKLVFNVSDPSR-LSNLVLEVYVYN 72 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcC-CCCCccceEEEEEccCHHH-ccCCeEEEEEee
Confidence 5899999999999888888999999999976 5789999887 7999999999999975432 123589999999
Q ss_pred cCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEec
Q 021949 86 DGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSE 145 (305)
Q Consensus 86 ~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~ 145 (305)
++.+ +|+|||++.|+|.++.... +....||.|.++ .++.+|+|.|++.|++
T Consensus 73 ~~~~~~~d~~lG~v~i~l~~l~~~~---------~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 73 DRRSGRRRSFLGRVRISGTSFVPPS---------EAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCcCCCCeeeEEEEcHHHcCCCC---------CccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 8876 6899999999999998322 124678888764 4568999999999864
No 6
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.85 E-value=1.8e-20 Score=156.48 Aligned_cols=127 Identities=15% Similarity=0.286 Sum_probs=103.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|...+.++++||||+|++.+ ++.+|+++++++.||+|||+|+|.+.+... ..|.|+|||
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~----~~l~v~V~d 70 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPFE----DHLILSVED 70 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCccC----CeEEEEEEE
Confidence 3899999999999999899999999999976 688999987657999999999999865321 489999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--------CCccEEEEEEEEeccCC
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--------KPKGELHFSYKFSEPTV 148 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--------~~~G~l~lsl~~~~~~~ 148 (305)
++.+ +|++||++.|+|.++.... +.......||.|.+.++ +.+|+|+|+|.|.+...
T Consensus 71 ~~~~~~dd~lG~v~i~L~~l~~~~------~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 71 RVGPNKDEPLGRAVIPLNDIERRV------DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred ecCCCCCCeEEEEEEEHHHCcccC------CCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 9877 7899999999999987432 11123477899987543 56899999999997543
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.2e-20 Score=152.83 Aligned_cols=121 Identities=21% Similarity=0.405 Sum_probs=97.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh-ccCceEEEEEEEe
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA-QQNRLTLDFKIKS 85 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~-~~~~~~L~v~V~d 85 (305)
++|+|++|++|...+..+++||||+|++.. .+.||+++++ +.||+|||+|.|.+..... +.....|.|+|||
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d 73 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMH 73 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEE
Confidence 579999999999888889999999999965 6789999988 7999999999999976311 0123589999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEEE
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSYK 142 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl~ 142 (305)
++.+ +|++||++.|+|.++.... .. ....||.|.... .+.+|+|+|+|+
T Consensus 74 ~~~~~~d~~iG~~~i~l~~l~~~~----~~----~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 74 RNLLGLDKFLGQVSIPLNDLDEDK----GR----RRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ccccCCCceeEEEEEEHHHhhccC----CC----cccEEEECcCCCCCCccccceEEEEeC
Confidence 9888 6899999999999997322 11 246789987533 356899999874
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.85 E-value=2.5e-20 Score=152.03 Aligned_cols=129 Identities=22% Similarity=0.391 Sum_probs=103.0
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
.|+|+|++|++|...+..++.||||+|++.+.. .....+.+|+++++ +.||.|||+|.|.+.... ..|.|+||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~~~v~ 74 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPRE-----HRLLFEVF 74 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCC-----CEEEEEEE
Confidence 489999999999999888999999999998641 11123679999887 899999999999986532 47999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEe
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFS 144 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~ 144 (305)
|++.+ .|++||++.++|.++.... ..+.......||.|++. .++.+|+|+|+++|.
T Consensus 75 d~~~~~~~~~iG~~~i~l~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 75 DENRLTRDDFLGQVEVPLNNLPTET----PGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ECCCCCCCCeeEEEEEEHHHCCCcC----ccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99988 7899999999999998643 21111235678888864 567899999999984
No 9
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.84 E-value=8.2e-20 Score=148.06 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=99.4
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
+..|+|+|++|++|+..+.++++||||++++.+ .+++|+++++ +.||+|||+|.|.+.... ..|+|+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~i~V 69 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKD-TLSPEFDTQAIFYRKKPR-----SPIKIQV 69 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCC-CCCCcccceEEEEecCCC-----CEEEEEE
Confidence 568999999999999988889999999999875 5789999887 899999999999886532 5899999
Q ss_pred EecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee----cCCCCCccEEEEEEEEecc
Q 021949 84 KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR----SSSGKPKGELHFSYKFSEP 146 (305)
Q Consensus 84 ~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~----~~~g~~~G~l~lsl~~~~~ 146 (305)
||++.++|++||++.+++.++... ...+|.|. +.+++..|+|.|++.+.+.
T Consensus 70 ~d~~~~~d~~lG~~~~~l~~~~~~------------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 70 WNSNLLCDEFLGQATLSADPNDSQ------------TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred EECCCCCCCceEEEEEecccCCCc------------CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 999888899999999999875421 13445553 3578899999999988764
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=5.2e-20 Score=149.11 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=93.8
Q ss_pred eEEEEEEEecC---CCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 6 ALDLNLISAKH---LKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 6 ~L~V~vvsA~d---L~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
.|+|+|++|++ |+..+..+++||||+|++++ ++.||+++++ +.||+|||+|.|.+.... ..|+|+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~-~~nP~WnE~f~f~v~~~~-----~~l~v~ 68 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVED-SSNPRWNEQYTWPVYDPC-----TVLTVG 68 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccC-CCCCcceeEEEEEecCCC-----CEEEEE
Confidence 38999999999 78888889999999999975 6889999988 799999999999996543 389999
Q ss_pred EEecCCC-------CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEE
Q 021949 83 IKSDGLL-------GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHF 139 (305)
Q Consensus 83 V~d~~~~-------~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~l 139 (305)
|||++.+ +|++||++.|+|.++..+. ....||+|+..+ .+..|.|++
T Consensus 69 V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 69 VFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDR----------VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEECCCccccccCCCCceEEEEEEEHHHccCCC----------EEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999875 7999999999999988533 347789988643 456777764
No 11
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.83 E-value=1.2e-19 Score=152.76 Aligned_cols=120 Identities=23% Similarity=0.439 Sum_probs=99.2
Q ss_pred cceEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEecCCCCCCceEEeEecCCC
Q 021949 4 YRALDLNLISAKHLKDVH------------------------------LISKMDVYAVVSISGDHTIKKQKVKSHVDRSG 53 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~------------------------------~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~ 53 (305)
+++|+|+|++|++|.+.+ ..+++||||+|++.+ .+..||+++++
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~- 79 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIEN- 79 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCC-
Confidence 689999999999998876 246689999999976 24679999887
Q ss_pred CCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC-
Q 021949 54 GSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK- 132 (305)
Q Consensus 54 ~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~- 132 (305)
+.||+|||+|.|.+.... ..|.|+|||++.+++++||++.|+|+++.... ....||.|....++
T Consensus 80 ~~nP~WnE~F~~~~~~~~-----~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~----------~~~~w~~L~~~~~~~ 144 (158)
T cd04015 80 SENPVWNESFHIYCAHYA-----SHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE----------PVEGWLPILDSNGKP 144 (158)
T ss_pred CCCCccceEEEEEccCCC-----CEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC----------CcceEEECcCCCCCC
Confidence 699999999999986543 47999999999888899999999999998533 24678999875443
Q ss_pred --CccEEEEEEEEe
Q 021949 133 --PKGELHFSYKFS 144 (305)
Q Consensus 133 --~~G~l~lsl~~~ 144 (305)
..++|+|+++|.
T Consensus 145 ~~~~~~l~v~~~f~ 158 (158)
T cd04015 145 PKPGAKIRVSLQFT 158 (158)
T ss_pred CCCCCEEEEEEEEC
Confidence 468999999984
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.83 E-value=2e-19 Score=145.74 Aligned_cols=119 Identities=24% Similarity=0.400 Sum_probs=98.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|.|+|++|++|.. .++++||||++++... ..+.+|+++++ +.||+|||+|.|.+.... ..|.|+|||+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~----~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~l~~~v~d~ 68 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP----PQKYQSSTQKN-TSNPFWDEHFLFELSPNS-----KELLFEVYDN 68 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC----CcEEEeEEEec-CCCCccCceEEEEeCCCC-----CEEEEEEEEC
Confidence 6899999999987 6689999999999642 25789999887 799999999999996432 4799999999
Q ss_pred CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC---CCCCccEEEEEEEEeccC
Q 021949 87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS---SGKPKGELHFSYKFSEPT 147 (305)
Q Consensus 87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~---~g~~~G~l~lsl~~~~~~ 147 (305)
+.. +|++||++.|+|.++.... . ...||.|... +.+.+|+|+|++.|.+..
T Consensus 69 ~~~~~~~~lG~~~i~l~~l~~~~----~------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 69 GKKSDSKFLGLAIVPFDELRKNP----S------GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCCCCceEEEEEEeHHHhccCC----c------eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 988 7999999999999998644 1 2567888754 356799999999998764
No 13
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.83 E-value=1.4e-19 Score=144.58 Aligned_cols=115 Identities=17% Similarity=0.325 Sum_probs=97.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
+.|+|+|++|++|+..+.++++||||++.+.. .+.+|+++++ +.||.|||+|.|.+.+.. ..|.|+||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~-t~nP~W~e~f~~~~~~~~-----~~l~~~v~ 68 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYK-TLNPEWNKIFTFPIKDIH-----DVLEVTVY 68 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecC-CcCCccCcEEEEEecCcC-----CEEEEEEE
Confidence 57999999999999988889999999999965 4679999887 799999999999986532 48999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEE
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKF 143 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~ 143 (305)
|++.+ .+++||++.++|.++.... ..||.|++. +.+.+|+|.|+++|
T Consensus 69 d~~~~~~~~~iG~~~~~l~~~~~~~------------~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 69 DEDKDKKPEFLGKVAIPLLSIKNGE------------RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred ECCCCCCCceeeEEEEEHHHCCCCC------------ceEEECcccCCCCceeeEEEEEEEe
Confidence 99886 7899999999999986322 458888764 35689999999987
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=1.5e-19 Score=144.95 Aligned_cols=117 Identities=19% Similarity=0.384 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|+|+|++|++|++.+.++++||||++++.+.. ..+.||+++++ +.||+|||+|.|.+.... ...|.|+|||+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~----~~~l~v~v~d~ 73 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS---DEKKRTKTIKN-SINPVWNETFEFRIQSQV----KNVLELTVMDE 73 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC---CccCccceecC-CCCCccceEEEEEeCccc----CCEEEEEEEEC
Confidence 78999999999998888999999999996532 25789999988 799999999999987542 24799999999
Q ss_pred CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949 87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS 144 (305)
Q Consensus 87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~ 144 (305)
+.++|++||++.++|.++..+. ....||.|.. +.+|+|+|+|.+.
T Consensus 74 d~~~~~~iG~~~~~l~~l~~g~----------~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 74 DYVMDDHLGTVLFDVSKLKLGE----------KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred CCCCCcccEEEEEEHHHCCCCC----------cEEEEEECCC---CCCceEEEEEEee
Confidence 8778899999999999987432 3577888864 3589999998874
No 15
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=9.8e-20 Score=146.67 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=96.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|.|+|++|++|... +.||||++.+.+ .+.||+++++ +.||+|||+|.|.+.... ...|.|+|||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~-t~nP~Wne~F~f~~~~~~----~~~L~~~v~d~ 66 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIER-TSNPEWNQVFAFSKDRLQ----GSTLEVSVWDK 66 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCC-CCCCccceEEEEEcCCCc----CCEEEEEEEeC
Confidence 89999999999876 689999999975 5789999887 799999999999986532 25899999999
Q ss_pred CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC-CCCccEEEEEEEEe
Q 021949 87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS-GKPKGELHFSYKFS 144 (305)
Q Consensus 87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~-g~~~G~l~lsl~~~ 144 (305)
+.+++++||++.|+|.++.... ..++ .....||.|.+.. .+.+|+|+|+|+|.
T Consensus 67 d~~~~~~lG~~~i~l~~l~~~~----~~~~-~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 67 DKAKDDFLGGVCFDLSEVPTRV----PPDS-PLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred CCCcCceeeeEEEEhHhCcCCC----CCCC-CCCcceEEccCCCCCccceEEEEEEEec
Confidence 8778999999999999997533 2121 2346789888743 57899999999985
No 16
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=2.4e-19 Score=147.33 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=99.1
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|+|++|++|+..+.++++||||++.+.. .+++|+++++ +.||.|||+|.|.+.... ...|.|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~-t~nP~Wne~f~f~v~~~~----~~~l~i~ 81 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSD-TLNPKWNSSMQFFVKDLE----QDVLCIT 81 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCC-CCCCccCceEEEEecCcc----CCEEEEE
Confidence 4588999999999999988889999999999964 6889999888 899999999999996532 2489999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
|||++.+ .|++||++.|+|.++.... ... +...+.+..+ +++.+|+|+|++.|
T Consensus 82 V~D~d~~~~d~~lG~~~i~l~~l~~~~----~~~-~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 82 VFDRDFFSPDDFLGRTEIRVADILKET----KES-KGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred EEECCCCCCCCeeEEEEEEHHHhcccc----ccC-CCcEEEEecc---ccccceeEEEEEEe
Confidence 9999987 7899999999999998532 111 1122344444 46788999999987
No 17
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=2.4e-19 Score=144.13 Aligned_cols=121 Identities=26% Similarity=0.416 Sum_probs=97.6
Q ss_pred ceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
+.|+|+|++|++|+..+.+ +.+||||++++... ..+.+|+++++ +.||.|||+|.|.+... ...|.|+|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~-~~~P~Wne~~~~~v~~~-----~~~l~~~v 71 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKD-TSNPVWNETKYILVNSL-----TEPLNLTV 71 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecC-CCCCcceEEEEEEeCCC-----CCEEEEEE
Confidence 6899999999999976544 67899999999763 25789999887 89999999999998732 25899999
Q ss_pred EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE 145 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~ 145 (305)
||++.+ +|++||++.++|.++.... . ....++.+. .+++.+|+|+|+++|.+
T Consensus 72 ~d~~~~~~d~~iG~~~~~l~~l~~~~----~-----~~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 72 YDFNDKRKDKLIGTAEFDLSSLLQNP----E-----QENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred EecCCCCCCceeEEEEEEHHHhccCc----c-----ccCcchhhh-cCCccceEEEEEEEeCC
Confidence 999887 7899999999999998644 1 112233333 57888999999999965
No 18
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.82 E-value=4.7e-19 Score=143.68 Aligned_cols=119 Identities=24% Similarity=0.357 Sum_probs=95.9
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
.+.|+|+|++|+||+.. +.+||||+|.+.+ .++.+|++ +. +.||.|||+|.|.+..... ..|+|.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-----~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~----~~l~v~v 68 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE-----VKVARTKV-RE-GPNPVWSEEFVFDDLPPDV----NSFTISL 68 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC-----EeEEEeec-CC-CCCCccCCEEEEecCCCCc----CEEEEEE
Confidence 46899999999999874 4689999999965 35678887 44 6999999999998654322 3688999
Q ss_pred EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEEEEecc
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSYKFSEP 146 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl~~~~~ 146 (305)
||++.. +|++||++.|+|.++.... ....||.|...+ .+..|+|+|+++|.+.
T Consensus 69 ~d~~~~~~d~~iG~v~i~l~~l~~~~----------~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 69 SNKAKRSKDSEIAEVTVQLSKLQNGQ----------ETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EECCCCCCCCeEEEEEEEHhHccCCC----------cccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 999887 7999999999999987533 246788887643 4567999999999875
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=2.1e-19 Score=144.83 Aligned_cols=116 Identities=19% Similarity=0.311 Sum_probs=96.3
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
+|+|+|++|++|...+.++.+||||+|++.+ .+.+|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~----~~~l~~~v~d 69 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKK-SCYPRWNEVFEFELMEGA----DSPLSVEVWD 69 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecC-CCCCccCcEEEEEcCCCC----CCEEEEEEEE
Confidence 4899999999999988888999999999865 5789999887 799999999999997643 2579999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec------CCCCCccEEEEEEE
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS------SSGKPKGELHFSYK 142 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~------~~g~~~G~l~lsl~ 142 (305)
++.+ .+++||++.++|.++.... ....||.|.. ++++..|.|+|.|+
T Consensus 70 ~~~~~~~~~iG~~~~~l~~l~~~~----------~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 70 WDLVSKNDFLGKVVFSIQTLQQAK----------QEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCCCCCCcEeEEEEEEHHHcccCC----------CCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 9887 6899999999999987533 1255777775 35677899998874
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=4.1e-19 Score=143.05 Aligned_cols=117 Identities=17% Similarity=0.296 Sum_probs=96.2
Q ss_pred eEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 6 ALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
.|.|+|++|++|+..+ ..+.+||||+|.+.. ..+.+|+++++ +.||.|||+|.|.+.+.. ..|.|+||
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-----~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~-----~~l~~~v~ 69 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-----EEVFRTKTVEK-SLCPFFGEDFYFEIPRTF-----RHLSFYIY 69 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECC-----ccEEEeeEEEC-CCCCccCCeEEEEcCCCC-----CEEEEEEE
Confidence 3789999999999864 347889999999964 25789999887 899999999999997542 48999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec--CCCCCccEEEEEEEE
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS--SSGKPKGELHFSYKF 143 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~--~~g~~~G~l~lsl~~ 143 (305)
|++.+ +|++||++.++|+++.... ....||.|.. .+++.+|+|+|+++|
T Consensus 70 d~~~~~~~~~iG~~~i~l~~l~~~~----------~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 70 DRDVLRRDSVIGKVAIKKEDLHKYY----------GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred ECCCCCCCceEEEEEEEHHHccCCC----------CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99988 7899999999999987433 2466888775 345679999999875
No 21
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=6e-19 Score=140.52 Aligned_cols=114 Identities=16% Similarity=0.251 Sum_probs=96.8
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|+..+.++..||||++++.+ .+.+|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~----~~~l~v~v~d 69 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSK-TLNPQWLEQFDLHLFDDQ----SQILEIEVWD 69 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC------EeEecccccC-CCCCceeEEEEEEecCCC----CCEEEEEEEE
Confidence 4789999999999988888999999999964 6789999887 899999999999986542 2589999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS 144 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~ 144 (305)
++.+ .|++||++.++|.++.... ....|+.|... +|+|+|.+++.
T Consensus 70 ~~~~~~~~~iG~~~~~l~~l~~~~----------~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 70 KDTGKKDEFIGRCEIDLSALPREQ----------THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCCCCCCeEEEEEEeHHHCCCCC----------ceEEEEEccCC----CcEEEEEEEec
Confidence 9987 7999999999999987533 35788988743 59999998874
No 22
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=149.06 Aligned_cols=95 Identities=25% Similarity=0.428 Sum_probs=86.4
Q ss_pred CccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 2 ASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 2 ~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
+..+.|+|+|+++.+|...++.+++||||++.+++ ++.||+++++ ++||+|||+|+|.|.+.. ..|+|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~-n~NPeWNe~ltf~v~d~~-----~~lkv 70 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYK-NLNPEWNEELTFTVKDPN-----TPLKV 70 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecC-CCCCcccceEEEEecCCC-----ceEEE
Confidence 35688999999999999999879999999999997 7999998887 799999999999998765 59999
Q ss_pred EEEecCCC-CCcceeEEEEeCccccccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~ 108 (305)
+|||++.+ .|||||++.|+|..++...
T Consensus 71 ~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 71 TVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred EEEeCCCCCcccccceeeeccHHHHHHh
Confidence 99999999 8999999999999998643
No 23
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=4.5e-19 Score=143.00 Aligned_cols=99 Identities=25% Similarity=0.232 Sum_probs=83.6
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDFK 82 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v~ 82 (305)
.++|+|+|++|++|...+ .+.+||||+|++.++..+ ..++||+++++ +.||+|||+|.|.+ ....+ ....|+|+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~-~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~ 86 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQK-TTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVS 86 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCcc-CCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEE
Confidence 467999999999999888 889999999999865422 35889999988 79999999999997 43333 23589999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDS 107 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~ 107 (305)
|||++.+ ++++||++.|+|.++...
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 87 VWSHDSLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred EEeCCCCcCCcEEEEEEEeccccccC
Confidence 9999988 789999999999999853
No 24
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=7.8e-19 Score=141.05 Aligned_cols=110 Identities=15% Similarity=0.274 Sum_probs=86.7
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
+|+|+|++|++|+..+ .+++||||+|+|.+.. ....++++|+++++ +.||+|||+|.|.|.... ......|.|+||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V~ 77 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNED-DPESYELHICVK 77 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcC-CCceeEEEEEEE
Confidence 5899999999999876 4899999999985311 11135678999866 899999999999997542 223468999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|++.. .|++||++.|+|.++.... ....|+.|.+
T Consensus 78 D~d~~~~dd~IG~~~l~l~~~~~~~----------~~~~w~~L~~ 112 (120)
T cd08395 78 DYCFARDDRLVGVTVLQLRDIAQAG----------SCACWLPLGR 112 (120)
T ss_pred EecccCCCCEEEEEEEEHHHCcCCC----------cEEEEEECcC
Confidence 99876 6889999999999998543 2467888865
No 25
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=8.8e-19 Score=141.71 Aligned_cols=121 Identities=21% Similarity=0.371 Sum_probs=98.5
Q ss_pred ceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 5 RALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
+.|+|+|++|++|...+. ++.+||||+|.+.. .+.+|+++++ +.||.|||+|.|.+.... ...|.|+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~-t~~P~Wne~f~~~~~~~~----~~~l~i~ 69 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPN-TLNPKWNYWCEFPIFSAQ----NQLLKLI 69 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecC-CcCCccCCcEEEEecCCC----CCEEEEE
Confidence 579999999999998887 78999999999854 6789999887 899999999999997522 2589999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC----CCCccEEEEEEEE
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS----GKPKGELHFSYKF 143 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~----g~~~G~l~lsl~~ 143 (305)
|||++.+ .+++||++.|+|.++.... .. .....||.|...+ .+..|+|+|++++
T Consensus 70 v~d~~~~~~~~~lG~~~i~l~~~~~~~----~~---~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 70 LWDKDRFAGKDYLGEFDIALEEVFADG----KT---GQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEECCCCCCCCcceEEEEEHHHhhccc----cc---CccceeEEccCcccCccccccceEEEEEEC
Confidence 9999888 7899999999999997421 00 1235788887542 3479999999874
No 26
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.80 E-value=9.2e-19 Score=141.29 Aligned_cols=116 Identities=18% Similarity=0.304 Sum_probs=94.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
+|+|+|++|++|...+.++++||||++++.+ ..+++|+++++ +.||.|||+|.|.+... ..|.|+|||
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~kT~v~~~-t~nP~Wne~f~~~~~~~------~~l~i~V~d 68 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-----GQTHSTDVAKK-TLDPKWNEHFDLTVGPS------SIITIQVFD 68 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC-----ccceEccEEcC-CCCCcccceEEEEeCCC------CEEEEEEEE
Confidence 4899999999999988889999999999964 26889999887 79999999999999652 489999999
Q ss_pred cCCC-C--CcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC----CCCCccEEEEEEE
Q 021949 86 DGLL-G--DKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS----SGKPKGELHFSYK 142 (305)
Q Consensus 86 ~~~~-~--d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~----~g~~~G~l~lsl~ 142 (305)
++.+ . |++||++.++|.+++... .. ...||.|++. .+...|+|.++++
T Consensus 69 ~~~~~~~~d~~lG~~~i~l~~l~~~~----~~-----~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 69 QKKFKKKDQGFLGCVRIRANAVLPLK----DT-----GYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCCCCCCCCceEeEEEEEHHHccccC----CC-----ccceeEeecCCCCCCceEeeEEEEEeC
Confidence 9877 2 579999999999998543 11 2347777653 3556888888763
No 27
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.80 E-value=1.4e-18 Score=139.91 Aligned_cols=117 Identities=15% Similarity=0.279 Sum_probs=96.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|.|+|++|++|.+.+.++++||||++.+.+ ..+.||+++++ +.||.|||+|.|.+.... ..|.|+|||
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~-----~~l~v~v~d 69 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN-----EVIIRTATVWK-TLNPFWGEEYTVHLPPGF-----HTVSFYVLD 69 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC-----EeeeeeeeEcC-CCCCcccceEEEeeCCCC-----CEEEEEEEE
Confidence 3899999999999999889999999999965 24579999888 799999999999986532 489999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec--CCCCCccEEEEEEE
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS--SSGKPKGELHFSYK 142 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~--~~g~~~G~l~lsl~ 142 (305)
++.+ .|++||++.+.+.++.... . ....|+.|+. ..++..|+|+|+++
T Consensus 70 ~~~~~~d~~iG~~~~~~~~~~~~~-----~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 70 EDTLSRDDVIGKVSLTREVISAHP-----R----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCCCCCCEEEEEEEcHHHhccCC-----C----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 9988 7899999999999887422 1 1245777754 45567899999876
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.3e-18 Score=139.28 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=95.6
Q ss_pred ceEEEEEEEecCCCCCCC------CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceE
Q 021949 5 RALDLNLISAKHLKDVHL------ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLT 78 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~------~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~ 78 (305)
+.|+|+|++|++|...+. .+.+||||++++.+ .+.+|+++++ +.||+|||+|.|.+.... ...
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~-t~~P~W~e~f~~~v~~~~----~~~ 69 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKE-NLNPKWNEVYEAVVDEVP----GQE 69 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCC-CCCCcccceEEEEeCCCC----CCE
Confidence 579999999999998764 26799999999975 6889999887 899999999999986532 258
Q ss_pred EEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 79 LDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 79 L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
|+|+|||++..+|++||++.++|.++.... ....||.|.. ..+|+|+|+++|
T Consensus 70 l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~----------~~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 70 LEIELFDEDPDKDDFLGRLSIDLGSVEKKG----------FIDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred EEEEEEecCCCCCCcEEEEEEEHHHhcccC----------ccceEEECcC---CCCceEEEEEeC
Confidence 999999998778899999999999998533 2367888864 367999999875
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.79 E-value=9.2e-19 Score=139.46 Aligned_cols=95 Identities=13% Similarity=0.278 Sum_probs=81.4
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|.|+|++|++|+ ..+.+||||++++..+.. ..+++|+|+++ +.||+|||+|.|.|....+. +.+|.|.
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k--~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~--~~tL~~~ 83 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEG--QKEAQTALKKL-ALHTQWEEELVFPLPEEESL--DGTLTLT 83 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC--ccEEEcceecC-CCCCccccEEEEeCCHHHhC--CcEEEEE
Confidence 3578999999999998 346799999999975322 36889999888 89999999999999877654 4689999
Q ss_pred EEecCCC-CCcceeEEEEeCcccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~ 105 (305)
|||.+.+ ++++||++.++|+++.
T Consensus 84 V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 84 LRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred EEeCCCCCCCceEEEEEEcccccc
Confidence 9999998 8999999999999874
No 30
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=1.5e-18 Score=144.46 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccc-----------hhcc
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQS-----------LAQQ 74 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~-----------~~~~ 74 (305)
+|.|+|++|++|.. ..+..||||+|.+.+...+ ..+++|+++++ +.||+|||+|.|.+... ..+.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k-~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKK-QDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCccc-CcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccc
Confidence 48999999999987 4588999999999864321 35788999887 89999999999999521 1111
Q ss_pred CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949 75 NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS 129 (305)
Q Consensus 75 ~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~ 129 (305)
....|.|+|||++.+ +|+|||++.|+|.++.... . ....||.|...
T Consensus 77 ~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~-----~----~~~~W~~L~~~ 123 (148)
T cd04010 77 EKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA-----G----SHQAWYFLQPR 123 (148)
T ss_pred cEEEEEEEEEcCCCCCCCceeEEEEEecccccccC-----C----cCcceeecCCc
Confidence 235899999999887 8899999999999988531 1 23668888764
No 31
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=3.8e-18 Score=138.24 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=98.2
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-
Q 021949 11 LISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL- 89 (305)
Q Consensus 11 vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~- 89 (305)
|++|++|.+ .+++.||||+|++.+ .+.+|+++++ +.||+|||+|.|.+.... .....|.|+|||++.+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~ 70 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVG 70 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCC
Confidence 789999998 678999999999965 5789999988 799999999999996542 1235899999999887
Q ss_pred CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC-CccEEEEEEEEeccCCC
Q 021949 90 GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK-PKGELHFSYKFSEPTVG 149 (305)
Q Consensus 90 ~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~-~~G~l~lsl~~~~~~~~ 149 (305)
.|++||++.++|.++.... ....|+.|.+.+++ .+|+|+|+++|.+...+
T Consensus 71 ~d~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEG----------LLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred CCceEEEEEEEhhHcccCC----------ceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 7899999999999998533 24778999876555 58999999999987653
No 32
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.78 E-value=2.3e-18 Score=140.01 Aligned_cols=113 Identities=20% Similarity=0.322 Sum_probs=91.3
Q ss_pred ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..++|.|+|++|++|...+.. +..||||++++..+..+ ..++||+++++ +.||+|||+|.|.|....+ ....|.|
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~-~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v 88 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH-NSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQV 88 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc-cceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEE
Confidence 357899999999999988764 88999999999865432 35789999887 8999999999999876544 3368999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEe
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV 126 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l 126 (305)
.|||.+.+ ++++||++.|+|.++.... .. +....||.|
T Consensus 89 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~---~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLKRRVFLGEVLIPLADWDFED----TD---SQRFLWYPL 127 (128)
T ss_pred EEEeCCCCcCcceEEEEEEEcCCcccCC----CC---ccccceEEC
Confidence 99999887 7899999999999996432 11 234678876
No 33
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=2.1e-18 Score=139.59 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=84.2
Q ss_pred ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..+.|+|+|++|+||...+.. +.+||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+....+ ....|.|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~-~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~ 88 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSN-RGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNL 88 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCc-cccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEE
Confidence 346899999999999988865 78999999999765422 35679999988 7999999999999876544 3358999
Q ss_pred EEEecCCC-CCcceeEEEEeCccccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
+|||.+.+ ++++||++.|+|.++..
T Consensus 89 ~V~d~~~~~~~~~iG~~~i~L~~~~~ 114 (125)
T cd08393 89 SVWHRDSLGRNSFLGEVEVDLGSWDW 114 (125)
T ss_pred EEEeCCCCCCCcEeEEEEEecCcccc
Confidence 99999887 78999999999999964
No 34
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.78 E-value=6.1e-18 Score=137.99 Aligned_cols=117 Identities=16% Similarity=0.317 Sum_probs=95.6
Q ss_pred cceEEEEEEEecCCCCCCCC----------CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc
Q 021949 4 YRALDLNLISAKHLKDVHLI----------SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ 73 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~----------gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~ 73 (305)
.+.|+|+|++|++|+..+.. +.+||||++++.+ .+..+|+++++ +.||.|||+|.|.+...
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-----~~~~kT~~~~~-t~~P~Wne~f~~~v~~~--- 73 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-----THIGKTSTKPK-TNSPVWNEEFTTEVHNG--- 73 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-----EEEeEEeEcCC-CCCCCcceeEEEEcCCC---
Confidence 57899999999999887752 5789999999975 24578998777 89999999999999632
Q ss_pred cCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949 74 QNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE 145 (305)
Q Consensus 74 ~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~ 145 (305)
..|.|+|||++.+ .+++||++.|+|.++.... + .....|+.|. +.|+|+|++++..
T Consensus 74 ---~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~---~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 74 ---RNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-----S---GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred ---CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-----C---CcccEEEEcc-----CCcEEEEEEEEec
Confidence 4899999998877 7899999999999998531 1 1246788885 5799999999864
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=5.2e-18 Score=140.64 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=88.0
Q ss_pred cceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 4 YRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
.+.|+|+|++|++|...+ ..+..||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+.. .+..|.|+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~-~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~ 100 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKC-IAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVI 100 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCcc-ccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEE
Confidence 468999999999998754 4578999999999865422 35889999987 8999999999999972 23689999
Q ss_pred EE-ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949 83 IK-SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS 129 (305)
Q Consensus 83 V~-d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~ 129 (305)
|| |++.+ ++++||++.|+|+++.... ....||.|...
T Consensus 101 V~~d~~~~~~~~~iG~~~i~L~~l~~~~----------~~~~Wy~L~~~ 139 (146)
T cd04028 101 VWGDYGRMDKKVFMGVAQILLDDLDLSN----------LVIGWYKLFPT 139 (146)
T ss_pred EEeCCCCCCCCceEEEEEEEcccccCCC----------CceeEEecCCc
Confidence 99 56666 7899999999999985322 23679999864
No 36
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=2.3e-18 Score=139.15 Aligned_cols=101 Identities=12% Similarity=0.179 Sum_probs=86.2
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|+|++|+||...+..+..||||++++..+..+...++||+++++ +.||+|||+|.|.|....+. ...|.|.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~--~~~L~~~ 88 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLY--QKTLQVD 88 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhh--cCEEEEE
Confidence 35789999999999998876778999999999876543235889999888 89999999999999776653 3699999
Q ss_pred EEecCCC-CCcceeEEEEeCccccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
||+.+.+ ++++||++.|+|.++..
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccC
Confidence 9999877 78999999999999954
No 37
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.77 E-value=4.6e-18 Score=137.15 Aligned_cols=97 Identities=31% Similarity=0.497 Sum_probs=82.9
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
++|+|+|++|++|++.+.++++||||+|++.. .+++|+++++++.||+|||+|.|.+..... .....|.|+||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~ 73 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIM 73 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEE
Confidence 57999999999999988889999999999965 577888887668999999999999977532 11258999999
Q ss_pred ecCCC-CCcceeEEEEeCccccccc
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~ 108 (305)
|++.+ +|++||++.|+|.+++...
T Consensus 74 d~~~~~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 74 DKDNFSDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred ECccCCCCCeEEEEEEEhHHhhhCC
Confidence 99887 7899999999999998644
No 38
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=5.8e-18 Score=137.11 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=84.0
Q ss_pred ccceEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHL-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..++|.|+|++|++|...+. .+.+||||+|++..+..+ ..++||+++++ +.||+|||+|.|.|....+ .+..|.|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~-~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSR-QSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcc-ccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence 45789999999999987654 478999999999754321 35789999887 8999999999999976544 2358999
Q ss_pred EEEecCCC-CCcceeEEEEeCccccccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~ 108 (305)
+|||++.+ ++++||++.|+|.++....
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~ 116 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDS 116 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccC
Confidence 99999887 7889999999999997533
No 39
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=6.3e-18 Score=133.45 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=80.1
Q ss_pred ceEEEEEEEecCCCCCCCC----CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949 5 RALDLNLISAKHLKDVHLI----SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD 80 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~----gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~ 80 (305)
+.|.|+|++|++|+..+.. +.+||||+|++.. +++||+++++ +.||+|||+|.|.+..... ...|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~-t~nPvWne~f~f~v~~~~~---~~~L~ 70 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRH-TLNPVFNERLAFEVYPHEK---NFDIQ 70 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecC-CCCCcccceEEEEEeCccC---CCEEE
Confidence 5799999999999987643 3489999999954 6789999988 7999999999999865432 25899
Q ss_pred EEEEecCCC-CCcceeEEEEeCccccccc
Q 021949 81 FKIKSDGLL-GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~ 108 (305)
|+|||++.+ +|++||++.++|.+|+...
T Consensus 71 ~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 71 FKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 999999988 8999999999999998654
No 40
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.76 E-value=9.1e-18 Score=133.39 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=95.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|+|+|++|++|...+..+++||||+|.+.+ ....+|+++++ +.+|+|||+|.|.+.... ...|.|+|||+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~----~~~l~~~v~d~ 70 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKK-TLNPVWNESFEVPVPSRV----RAVLKVEVYDW 70 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecC-CCCCcccccEEEEeccCC----CCEEEEEEEeC
Confidence 689999999999988888999999999965 25689999877 899999999999987542 25899999999
Q ss_pred CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEE
Q 021949 87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHF 139 (305)
Q Consensus 87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~l 139 (305)
+.. .+++||++.++|.++.... ....|+.|...++...|+|.+
T Consensus 71 ~~~~~~~~iG~~~~~l~~l~~~~----------~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 71 DRGGKDDLLGSAYIDLSDLEPEE----------TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCCCCCCceEEEEEEHHHcCCCC----------cEEEEEECcCCCCccCceEEc
Confidence 887 7899999999999987533 357889998777778888764
No 41
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=5.1e-18 Score=136.29 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=82.0
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|...+ .+..||||++++..+..+ ..+.||+++++ +.||+|||+|.|.+...... ..|.|+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~-~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~---~~l~v~ 83 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEV-RFRQKTSTVPD-SANPLFHETFSFDVNERDYQ---KRLLVT 83 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCC-cceEeCccccC-CCCCccccEEEEEcChHHhC---CEEEEE
Confidence 3578999999999999887 788999999999875432 35779999887 89999999999998765432 368899
Q ss_pred EEecCCC--CCcceeEEEEeCccccc
Q 021949 83 IKSDGLL--GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 83 V~d~~~~--~d~~IG~~~vpL~~l~~ 106 (305)
|||++.. ++++||++.|+|.++..
T Consensus 84 V~~~~~~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 84 VWNKLSKSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred EECCCCCcCCCEEEEEEEecHHHhcc
Confidence 9998876 47899999999999974
No 42
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.76 E-value=9.8e-18 Score=136.04 Aligned_cols=112 Identities=17% Similarity=0.302 Sum_probs=91.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|...+.+++.||||+|.+.. .+.+|+++++ +.||.|||+|.|.+.... ..|.|+|||
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~-t~~P~Wne~f~f~~~~~~-----~~l~i~v~d 69 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQ-NLNPVWNEKFHFECHNSS-----DRIKVRVWD 69 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecC-CCCCccceEEEEEecCCC-----CEEEEEEEE
Confidence 5899999999999998889999999999854 5789999887 899999999999885432 479999999
Q ss_pred cCCC------------CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEE
Q 021949 86 DGLL------------GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSY 141 (305)
Q Consensus 86 ~~~~------------~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl 141 (305)
++.. .+++||++.++|.++.. . ...||.|.+. ..+.+|+|.|++
T Consensus 70 ~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~-~-----------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 70 EDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG-E-----------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred CCCCcccccceeccccCCCcceEEEEEhHHccC-C-----------CCeEEECccCCCCCcEeEEEEEEC
Confidence 8742 58899999999998752 2 2467888764 345799999875
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=2e-17 Score=135.60 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=97.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccc-----hhccCceEEE
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQS-----LAQQNRLTLD 80 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~-----~~~~~~~~L~ 80 (305)
.|+|+|++|++|...+.+++.||||+|.+.+ .+.+|+++++ +.||+|||+|.|.+... ....+...|.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~ 74 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVV 74 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEE
Confidence 5899999999999988889999999999975 6889999887 89999999999985321 1111224799
Q ss_pred EEEEecCCC-CCcceeEEEE-eCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949 81 FKIKSDGLL-GDKTVGEVIV-PIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP 146 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~v-pL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~ 146 (305)
|+|||++.+ +|++||++.+ ++..+.... . ......|+.|.+ .++.+|+|.|++++.+.
T Consensus 75 v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~------~-~~~~~~W~~L~~-~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 75 VELFDQDSVGKDEFLGRSVAKPLVKLDLEE------D-FPPKLQWFPIYK-GGQSAGELLAAFELIEV 134 (135)
T ss_pred EEEEeCcCCCCCccceEEEeeeeeecccCC------C-CCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence 999999887 7899999987 443333211 1 123567888874 56789999999998764
No 44
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=9.4e-18 Score=135.25 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=89.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|+|++|++|...+..+..||||++.+.++. ..+.+|+++++ +.||+|||+|.|.+....+. ...|.|+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~---~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~--~~~l~~~ 87 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK---KKKFETKVHRK-TLNPVFNETFTFKVPYSELG--NKTLVFS 87 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC---CCceecccCcC-CCCCceeeeEEEeCCHHHhC--CCEEEEE
Confidence 357899999999999988888899999999997643 35789999887 79999999999998754332 2589999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
|||++.+ .+++||++.|+|.++.... ....|+.|.
T Consensus 88 V~d~d~~~~~~~lG~~~i~l~~~~~~~----------~~~~W~~l~ 123 (124)
T cd08385 88 VYDFDRFSKHDLIGEVRVPLLTVDLGH----------VTEEWRDLE 123 (124)
T ss_pred EEeCCCCCCCceeEEEEEecCcccCCC----------CcceEEEcc
Confidence 9999887 7899999999999986432 246677763
No 45
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=1e-17 Score=134.90 Aligned_cols=100 Identities=23% Similarity=0.285 Sum_probs=82.9
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
+.|.|+|++|++|...+ ..||||+|.+++ .+.+|+++++ .||+|||+|.|.+.+.. ..|.|+||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~------~k~kT~v~~~--~nP~WnE~F~F~~~~~~-----~~L~v~V~ 65 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN------VKSTTIAVRG--SQPCWEQDFMFEINRLD-----LGLVIELW 65 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC------EEeEeeECCC--CCCceeeEEEEEEcCCC-----CEEEEEEE
Confidence 57999999999998755 458999999976 6889999875 59999999999996532 36999999
Q ss_pred ecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 85 SDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 85 d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|++.+.|+|||++.|+|.++.... . .....||+|..
T Consensus 66 dkd~~~DD~lG~v~i~L~~v~~~~----~----~~~~~Wy~L~~ 101 (127)
T cd08394 66 NKGLIWDTLVGTVWIPLSTIRQSN----E----EGPGEWLTLDS 101 (127)
T ss_pred eCCCcCCCceEEEEEEhHHcccCC----C----CCCCccEecCh
Confidence 999889999999999999998644 1 22366888875
No 46
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=5.7e-18 Score=134.18 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=82.2
Q ss_pred ceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
++|+|+|++|++|...+.+ +++||||+|++.... ..+.+|+++++ +.||+|||+|.|.+....+. ....|.|+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~-~~~~l~~~V 75 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG---KPLYSTRIIRK-DLNPVWEETWFVLVTPDEVK-AGERLSCRL 75 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC---CccEeeeeECC-CCCCccceeEEEEeCchhcc-CCCEEEEEE
Confidence 5799999999999998887 899999999996532 35789999988 79999999999988654221 125899999
Q ss_pred EecCCC-CCcceeEEEEeCccccc
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
||++.+ .|++||++.++|.+|..
T Consensus 76 ~d~d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 76 WDSDRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred EeCCCCCCCCcceEEEEEHHHHhc
Confidence 999988 78999999999999984
No 47
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.76 E-value=3e-17 Score=137.23 Aligned_cols=133 Identities=18% Similarity=0.279 Sum_probs=102.5
Q ss_pred eEEEEEEEecCCC--CCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh----ccCceEE
Q 021949 6 ALDLNLISAKHLK--DVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA----QQNRLTL 79 (305)
Q Consensus 6 ~L~V~vvsA~dL~--~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~----~~~~~~L 79 (305)
.++|+|++|++++ .....+.+||||++++.-.. ....+.||+++++ +.||+|||+|.|.|..... ...+..|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~-~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPN-EEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCC-CCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4678888888854 44445689999999973221 1247999999988 8999999999999965421 1224579
Q ss_pred EEEEEecCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCCC
Q 021949 80 DFKIKSDGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGK 150 (305)
Q Consensus 80 ~v~V~d~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~~ 150 (305)
+|+|||.+.+ .|++||++.|+|..+.... ....|+.|.+......|.|+|++++++...++
T Consensus 81 ~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~----------~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 81 KFEVYHKGGFLRSDKLLGTAQVKLEPLETKC----------EIHESVDLMDGRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred EEEEEeCCCcccCCCeeEEEEEEcccccccC----------cceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence 9999999875 6999999999999997533 13568898876667889999999999887643
No 48
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.76 E-value=2.4e-17 Score=133.44 Aligned_cols=119 Identities=29% Similarity=0.397 Sum_probs=94.9
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..|+|+|++|+ |...+.++++||||+|++.+ ..+.+|+++++ +.||.|||+|.|.+... ..|.|+||
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-----~~~~kT~v~~~-t~~P~Wne~f~~~~~~~------~~l~~~V~ 68 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-----QPPKKTEVSKK-TSNPKWNEHFTVLVTPQ------STLEFKVW 68 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-----cccEEeeeeCC-CCCCccccEEEEEeCCC------CEEEEEEE
Confidence 46999999999 55555578999999999975 24789999877 89999999999998643 48999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC---CCCccEEEEEE
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS---GKPKGELHFSY 141 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~---g~~~G~l~lsl 141 (305)
|++.+ .|++||++.++|.++.... .+.- +....|+.+.+++ ++..|+|++++
T Consensus 69 d~~~~~~~~~iG~~~i~l~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 69 SHHTLKADVLLGEASLDLSDILKNH----NGKL-ENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred eCCCCCCCcEEEEEEEEHHHhHhhc----CCCc-cceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99988 7899999999999998644 2211 1235688888644 47799999876
No 49
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=3.7e-17 Score=132.06 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=97.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|+..+..+++||||++.+.... ..+.||+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~----~~~L~i~v~d 73 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK---RRIAKTRTIYD-TLNPRWDEEFELEVPAGE----PLWISATVWD 73 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC---eeeecccEecC-CCCCcccceEEEEcCCCC----CCEEEEEEEE
Confidence 589999999999998888999999999976431 25789999887 799999999999997642 2589999999
Q ss_pred cCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEecc
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEP 146 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~ 146 (305)
++.+ .+++||++.++|.++.... .+ .....|+.|.. .|+|+|.+.+.-.
T Consensus 74 ~d~~~~~~~iG~~~i~l~~~~~~~----~~---~~~~~w~~l~~-----~g~i~l~~~~~~~ 123 (126)
T cd04043 74 RSFVGKHDLCGRASLKLDPKRFGD----DG---LPREIWLDLDT-----QGRLLLRVSMEGE 123 (126)
T ss_pred CCCCCCCceEEEEEEecCHHHcCC----CC---CCceEEEEcCC-----CCeEEEEEEEeee
Confidence 9887 7899999999999875321 11 12467888863 6899999888654
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.4e-17 Score=134.22 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=90.2
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|.|+|++|++|...+..+..||||++.+.... ..+.+|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~ 87 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR---SNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVL 87 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC---CCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEE
Confidence 357899999999999998888999999999996432 35789999887 8999999999999876543 23589999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
|||++.+ +|++||++.|+|.++.... ....||.|.
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~~----------~~~~W~~l~ 123 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLSE----------KLDLWRKIQ 123 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCCC----------CcceEEECc
Confidence 9999888 7899999999999997433 236688775
No 51
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.75 E-value=5.5e-17 Score=131.05 Aligned_cols=122 Identities=23% Similarity=0.331 Sum_probs=98.0
Q ss_pred ceEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 5 RALDLNLISAKHLKDVH--LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~--~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..|+|+|++|++|+..+ ..+..||||++++.........+.+|+++++++.||+|||+|.|.+..... ..|.|+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~----~~l~~~ 77 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL----AFLRFV 77 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe----EEEEEE
Confidence 36999999999999877 578899999999975432124689999987755699999999999874432 479999
Q ss_pred EEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC--CCccEEEEEEEE
Q 021949 83 IKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG--KPKGELHFSYKF 143 (305)
Q Consensus 83 V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g--~~~G~l~lsl~~ 143 (305)
|||++..++++||++.++|.+|.. . ..+++|+++++ ...|+|.+.+++
T Consensus 78 V~d~~~~~~~~iG~~~~~l~~l~~-g------------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 78 VYDEDSGDDDFLGQACLPLDSLRQ-G------------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEeCCCCCCcEeEEEEEEhHHhcC-c------------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999987788999999999999863 2 45688888766 457888888876
No 52
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=1.3e-17 Score=130.82 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=85.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|.|+|++|++|+..+..+.+||||+|++.+ ++++|+++++ +.||.|||+|.|.+..... ..|.|+|||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~----~~l~v~v~d~ 70 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKER-TNNPVWEEGFTFLVRNPEN----QELEIEVKDD 70 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC------EEEeCccccC-CCCCcccceEEEEeCCCCC----CEEEEEEEEC
Confidence 899999999999988888999999999976 6889999877 8999999999999976432 4799999998
Q ss_pred CCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 87 GLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 87 ~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
+. +++||++.|+|.++.... . .....||.|..
T Consensus 71 ~~--~~~iG~~~i~l~~l~~~~----~----~~~~~w~~L~~ 102 (105)
T cd04050 71 KT--GKSLGSLTLPLSELLKEP----D----LTLDQPFPLDN 102 (105)
T ss_pred CC--CCccEEEEEEHHHhhccc----c----ceeeeeEecCC
Confidence 86 889999999999998532 1 23477888864
No 53
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=2.6e-17 Score=133.85 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=82.3
Q ss_pred ccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEE-EeccchhccCceEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKF-TFNQSLAQQNRLTLD 80 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f-~v~~~~~~~~~~~L~ 80 (305)
...+|+|+|++|++|+..+.. +..||||+|++..+. ..+.||+++++ +.||+|||+|.| .+..... .+..|+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~---~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~ 87 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLH 87 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc---CceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEE
Confidence 357899999999999988775 889999999997543 35789999888 899999999999 4554332 235799
Q ss_pred EEEEecCCC-CCcceeEEEEeCcccccc
Q 021949 81 FKIKSDGLL-GDKTVGEVIVPIKELLDS 107 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~ 107 (305)
|+|||++.+ +|++||++.|+|.++...
T Consensus 88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 88 FAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred EEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 999999877 899999999999999653
No 54
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.75 E-value=4.5e-17 Score=133.83 Aligned_cols=121 Identities=19% Similarity=0.337 Sum_probs=94.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-------CCceEEeEecCCCCCCCee-eceEEEEeccchhccCce
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-------KKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-------~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~ 77 (305)
.+.|++++|++|+ .++++++||||++++...... ..++++|+++++ +.||+| ||+|.|.+... .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~~------~ 73 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLPT------D 73 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCCC------C
Confidence 5789999999998 678899999999999753210 024789999987 899999 99999998543 3
Q ss_pred EEEEEEEecCCC----CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEE
Q 021949 78 TLDFKIKSDGLL----GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSY 141 (305)
Q Consensus 78 ~L~v~V~d~~~~----~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl 141 (305)
.|+|+|||++.. .|++||++.|+|.+|+... .. .....||+|.+. .+..+|+|.|.+
T Consensus 74 ~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~----~~---~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 74 VLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERH----AI---GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEEecCCCCCccCCceEEEEEEEHHHhcccc----cC---CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 799999997543 2799999999999998644 21 135678888864 456788888876
No 55
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.75 E-value=2.5e-17 Score=133.12 Aligned_cols=110 Identities=20% Similarity=0.275 Sum_probs=89.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|+|++|++|...+.++..||||+|.+..... ...++||+++++ +.||+|||+|.|.+....+. ...|.|.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~--~~~l~i~ 89 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKS-KSTRRKTSVKKD-NLNPVFDETFEFPVSLEELK--RRTLDVA 89 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCC-CCceEecccccC-CCCCEECeEEEEecCHHHhc--CCEEEEE
Confidence 3578999999999999998889999999999975432 246889999988 79999999999998765432 2589999
Q ss_pred EEecCCC---CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEe
Q 021949 83 IKSDGLL---GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQV 126 (305)
Q Consensus 83 V~d~~~~---~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l 126 (305)
|||++.+ +|++||++.|+|.++.... ....||.|
T Consensus 90 v~~~~~~~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFLSREKKLLGQVLIDLSDLDLSK----------GFTQWYDL 126 (127)
T ss_pred EEECCcccCCCCceEEEEEEecccccccC----------CccceEEC
Confidence 9999864 6899999999999986433 23667766
No 56
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=2.5e-17 Score=130.43 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=86.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..|+|+|++|++|. .+..||||++++.+ ++++|+++++ +.||.|||+|.|.+.....+..+..|.|+||
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 46999999999998 46799999999986 5778999877 7999999999999755433223358999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|++.+ +|++||++.|+|.++.... .. .+...|+.|.+
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~----~~---~~~~~w~~L~~ 110 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQP----DH---AFLRKWLLLTD 110 (111)
T ss_pred cCcccccCCccEEEEECCccccCCC----CC---cceEEEEEeeC
Confidence 99887 7899999999999998543 11 24577888875
No 57
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.74 E-value=2.5e-17 Score=132.33 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=83.3
Q ss_pred ccceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..+.|+|+|++|++|+..+ ..+..||||+|.+.++... ..+.+|+++++ +.||+|||+|.|.+....+. ...|.|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~--~~~l~i 87 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSK-QSKRKTSVKKN-TTNPVFNETLKYHISKSQLE--TRTLQL 87 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCc-CceeeccccCC-CCCCcccceEEEeCCHHHhC--CCEEEE
Confidence 3578999999999999887 6789999999998654321 35789999877 89999999999998765432 358999
Q ss_pred EEEecCCC-CCcceeEEEEeCccccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
+|||++.+ ++++||++.++|.++..
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccc
Confidence 99999877 78999999999999964
No 58
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=2.4e-17 Score=132.59 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=88.3
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
+.|+|+|++|++|++.+.++++||||+|++.+ ..+.+|+++++ +.||.|||+|.|.+.... ..|.|+||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~-----~~L~v~v~ 69 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-----IVKGRTVTISN-TLNPVWDEVLYVPVTSPN-----QKITLEVM 69 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-----EEeeceeEECC-CcCCccCceEEEEecCCC-----CEEEEEEE
Confidence 57999999999999998889999999999965 35788988877 899999999999886542 48999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS 130 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~ 130 (305)
|++.+ .|++||++.++|.++.... ...||.+.+.+
T Consensus 70 d~~~~~~d~~IG~~~~~l~~l~~~~-----------~~~~~~~~~~~ 105 (120)
T cd04045 70 DYEKVGKDRSLGSVEINVSDLIKKN-----------EDGKYVEYDDE 105 (120)
T ss_pred ECCCCCCCCeeeEEEEeHHHhhCCC-----------CCceEEecCCC
Confidence 99888 7889999999999998533 36688887643
No 59
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=2.8e-17 Score=129.95 Aligned_cols=106 Identities=16% Similarity=0.294 Sum_probs=86.4
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCee-eceEEEEeccchhccCceEEEEEEE
Q 021949 7 LDLNLISAKHLKDVHL-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
|+|+|++|++|+..+. .+.+||||++++.+ .+.||+++++ +.||.| ||+|.|.+....+. +..|+|+||
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~--~~~l~i~V~ 71 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQ--DEPLQIRVM 71 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecC-CCCCcccCcEEEEEcChHHcC--CCeEEEEEE
Confidence 6899999999998774 57899999999975 6889999987 799999 99999999765432 248999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|++.+ ++++||++.++|.++.... +.. ....||.|.+
T Consensus 72 d~d~~~~~~~iG~~~~~l~~l~~~~------~~~-~~~~w~~l~~ 109 (110)
T cd08688 72 DHDTYSANDAIGKVYIDLNPLLLKD------SVS-QISGWFPIYD 109 (110)
T ss_pred eCCCCCCCCceEEEEEeHHHhcccC------Ccc-ccCCeEEccc
Confidence 99988 7899999999999998632 111 2366888764
No 60
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=4.6e-17 Score=131.16 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=81.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEecc-chhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQ-SLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~-~~~~~~~~~L~v 81 (305)
..+.|.|+|++|++|...+.++..||||+|++.+... ...+.||+++++ +.||+|||+|.|.+.. ..+ ....|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~ 89 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRS-EKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCC-ccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEE
Confidence 3578999999999999988888999999999976432 136789999887 8999999999998643 222 2358999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~ 105 (305)
+|||++.+ ++++||++.++|.+..
T Consensus 90 ~V~d~~~~~~~~~iG~~~i~l~~~~ 114 (125)
T cd04031 90 TVWDYDRDGENDFLGEVVIDLADAL 114 (125)
T ss_pred EEEeCCCCCCCcEeeEEEEeccccc
Confidence 99999887 7899999999999943
No 61
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.73 E-value=3.4e-17 Score=133.87 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=85.2
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
...|+|+|++|++|+..+.+++.||||+|.+..... ....++||+++++ +.||+|||+|.|.+...........|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 468999999999999988889999999999975431 0136889999888 79999999999998764333334689999
Q ss_pred EEecCCC-CCcceeEEEEeCccccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
|||++.+ +|++||++.|+|++|..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999888 69999999999999984
No 62
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=8.7e-17 Score=129.70 Aligned_cols=110 Identities=18% Similarity=0.272 Sum_probs=87.4
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
...+|+|+|++|++|+..+.+++.||||++.+..+. ..+.+|+++++ +.||+|||+|.|.+..... .....|+|+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~---~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~-l~~~~l~~~ 88 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK---KHKLETKVKRK-NLNPHWNETFLFEGFPYEK-LQQRVLYLQ 88 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC---CcceeeeeecC-CCCCccceeEEEcccCHHH-hCCCEEEEE
Confidence 457899999999999998888899999999996432 35789999887 8999999999998533221 122479999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
|||++.+ ++++||++.|+|.++.... ....|+.|.
T Consensus 89 v~d~d~~~~~~~iG~~~i~l~~l~~~~----------~~~~W~~l~ 124 (125)
T cd08386 89 VLDYDRFSRNDPIGEVSLPLNKVDLTE----------EQTFWKDLK 124 (125)
T ss_pred EEeCCCCcCCcEeeEEEEecccccCCC----------CcceEEecC
Confidence 9999877 7899999999999987533 236677664
No 63
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=6e-17 Score=130.93 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=87.9
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v 81 (305)
....|+|+|++|+||...+..+..|+||++.+.... ..+.||+++++ .||+|||+|.|. +....+ .+..|.|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l--~~~~L~~ 86 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG--PNPVFNETFTFSRVEPEEL--NNMALRF 86 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC--CCCcccCEEEECCCCHHHh--ccCEEEE
Confidence 457899999999999988877889999998886643 36889998764 899999999998 665443 3468999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
+|||++.+ ++++||++.|+|+++.... ....||.|.
T Consensus 87 ~V~~~~~~~~~~~lG~~~i~L~~l~~~~----------~~~~w~~L~ 123 (124)
T cd08389 87 RLYGVERMRKERLIGEKVVPLSQLNLEG----------ETTVWLTLE 123 (124)
T ss_pred EEEECCCcccCceEEEEEEeccccCCCC----------CceEEEeCC
Confidence 99999888 7999999999999996432 346777764
No 64
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=1.7e-16 Score=127.62 Aligned_cols=109 Identities=22% Similarity=0.303 Sum_probs=88.6
Q ss_pred ccceEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVH-LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~-~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..+.|.|+|++|++|+..+ .++..||||++++..+. ..+.+|+++++ +.||+|||+|.|.+...... ...|.|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~---~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~--~~~l~i 85 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE---RRSLQSKVKRK-TQNPNFDETFVFQVSFKELQ--RRTLRL 85 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC---CCceEeeeEcC-CCCCccceEEEEEcCHHHhc--ccEEEE
Confidence 4578999999999999887 57889999999986543 35678999887 89999999999998765432 248999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
+|||.+.. ++++||++.|+|.++.... ....|+.|.
T Consensus 86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~----------~~~~w~~L~ 122 (123)
T cd08390 86 SVYDVDRFSRHCIIGHVLFPLKDLDLVK----------GGVVWRDLE 122 (123)
T ss_pred EEEECCcCCCCcEEEEEEEeccceecCC----------CceEEEeCC
Confidence 99999887 7899999999999998533 235677764
No 65
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=1.7e-16 Score=134.21 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=83.2
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|...+.++..||||+|++..+... ..++||+++++ +.||.|||+|.|.+.... +.....|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~-~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~-~l~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSK-KSKQKTPVVKK-SVNPVWNHTFVYDGVSPE-DLSQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCC-CcceeCCccCC-CCCCCCCCEEEEecCCHH-HhCCCEEEEE
Confidence 45789999999999999888899999999998643321 46889999988 799999999999853221 1123589999
Q ss_pred EEecCCC-CCcceeEEEEeCccccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
|||++.+ +|++||++.+.|.++..
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCcccc
Confidence 9999988 69999999999999875
No 66
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.70 E-value=3.2e-16 Score=130.07 Aligned_cols=91 Identities=21% Similarity=0.450 Sum_probs=81.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
+.|+|+|++|++|...+. +++||||++++.+ ++.+|+++++ +.||+|||+|.|.+.... ..|+|+||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~-t~nP~WnE~f~f~i~~~~-----~~l~~~V~ 68 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKK-NLNPVWNEELTLSVPNPM-----APLKLEVF 68 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcC-CCCCeecccEEEEecCCC-----CEEEEEEE
Confidence 689999999999998776 8899999999965 6899999888 899999999999997652 58999999
Q ss_pred ecCCC-CCcceeEEEEeCccccccc
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~ 108 (305)
|++.+ .|++||++.++|.+++...
T Consensus 69 D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 69 DKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred ECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 99988 7899999999999997643
No 67
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.8e-16 Score=132.29 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=85.4
Q ss_pred eEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch
Q 021949 6 ALDLNLISAKHLKDVHLIS--------------KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL 71 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~g--------------k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~ 71 (305)
+|+|+|++|+||...+.++ .+||||+|.+.+ .+.||+++++ +.||+|||+|.|.+....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~-t~nPvWNE~f~f~v~~p~ 73 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKN-SYNPEWNEQIVFPEMFPP 73 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcC-CCCCCcceEEEEEeeCCC
Confidence 4899999999999877443 689999999986 5679999988 799999999999975433
Q ss_pred hccCceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCC--cceEEEEEeec
Q 021949 72 AQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAK--SMKFVTYQVRS 128 (305)
Q Consensus 72 ~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~--~~~~~~~~l~~ 128 (305)
. ...|.|+|||++.. +|++||++.|+|.+|.... .++. .....|+.+..
T Consensus 74 ~---~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-----~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 74 L---CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG-----DEGFLPTFGPSFVNLYG 125 (151)
T ss_pred c---CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC-----ccccCCccCceEEEeec
Confidence 2 14899999999988 8999999999999997533 1110 12347888864
No 68
>PLN03008 Phospholipase D delta
Probab=99.69 E-value=2.5e-16 Score=158.67 Aligned_cols=125 Identities=19% Similarity=0.422 Sum_probs=103.5
Q ss_pred cceEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEecCCCCC
Q 021949 4 YRALDLNLISAKHLKDVHL------------------------------------------ISKMDVYAVVSISGDHTIK 41 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~------------------------------------------~gk~dpYv~v~l~~~~~~~ 41 (305)
+++|+|+|.+|++|.+.++ ++++||||+|.+..
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~----- 87 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ----- 87 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-----
Confidence 6889999999999875211 24679999999965
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceE
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKF 121 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~ 121 (305)
.++.||+|+++ +.||+|||+|.|.|.... ..|+|+|||++.+++++||++.|+|++|.... ...
T Consensus 88 ~rv~RTrVi~n-~~NPvWNE~F~f~vah~~-----s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge----------~vd 151 (868)
T PLN03008 88 ATLARTRVLKN-SQEPLWDEKFNISIAHPF-----AYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE----------RIS 151 (868)
T ss_pred cceeeEEeCCC-CCCCCcceeEEEEecCCC-----ceEEEEEEcCCccCCceeEEEEEEHHHcCCCC----------ceE
Confidence 35779999987 789999999999997643 48999999999998899999999999998533 347
Q ss_pred EEEEeecCCCC---CccEEEEEEEEeccCCC
Q 021949 122 VTYQVRSSSGK---PKGELHFSYKFSEPTVG 149 (305)
Q Consensus 122 ~~~~l~~~~g~---~~G~l~lsl~~~~~~~~ 149 (305)
.|+.|.+.+++ ..++|+|+++|.+...+
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEEcccc
Confidence 89999986654 46899999999997653
No 69
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=9.2e-17 Score=131.08 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=81.8
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|.|+|++|++|...+.++..||||+|.+.++..+ ..+.+|+++++ +.||+|||+|.|.+..... ....|.|+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~ 86 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGK-KSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEIT 86 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCc-cCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEE
Confidence 35789999999999999888889999999999764322 35789999887 8999999999999876543 23589999
Q ss_pred EEecCCC-CCcceeEEEEeCcc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~ 103 (305)
|||++.. .|++||++.|+|.+
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC
Confidence 9999877 78999999999975
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=2e-16 Score=128.28 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=78.0
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|.. +.+++.||||+|++.+ .+.||+++++ +.||+|||+|.|.+.... ....|+|+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~------~~~kT~vi~~-t~nPvWNE~F~f~~~~~~---~~~~L~v~ 94 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG------QEKRTEVIWN-NNNPRWNATFDFGSVELS---PGGKLRFE 94 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC------ccccCceecC-CCCCcCCCEEEEecccCC---CCCEEEEE
Confidence 35789999999999984 6678899999999965 4889999988 799999999999753321 12589999
Q ss_pred EEecCCC-CCcceeEEEEeCcccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~ 105 (305)
|||++.+ .|++||++.++|....
T Consensus 95 V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 95 VWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999988 8999999999998765
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=2.4e-16 Score=129.61 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=81.0
Q ss_pred ccceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949 3 SYRALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD 80 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~ 80 (305)
..++|.|+|++|++|...+. .+.+||||+|++..+..+ ..+.||+++++ +.||+|||+|.|.|....+ .+..|.
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k-~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~ 88 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK-LKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVE 88 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc-cceeccceeeC-CCCCccccEEEEECCHHHh--CccEEE
Confidence 35789999999999998763 345899999999875432 46889999887 8999999999999987654 346899
Q ss_pred EEEEecCCC-CCcceeEEEEeCcc
Q 021949 81 FKIKSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~vpL~~ 103 (305)
|+|||++.+ ++++||++.+.+..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC
Confidence 999999988 79999999999864
No 72
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=2.6e-16 Score=129.26 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=80.6
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
..+|.|+|++|++|...+..+.+||||+|++..+..+ ..+.||+++++ +.||+|||+|.|.|....+ .+..|.|+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~-~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~V 89 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK-ISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVTV 89 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc-ccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEEE
Confidence 4689999999999998887789999999999764322 34778999887 8999999999999977654 346899999
Q ss_pred EecCCC-CCcceeEEEEeCcc
Q 021949 84 KSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~ 103 (305)
||++.+ ++++||++.|....
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 999877 88999999997653
No 73
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.68 E-value=9.8e-17 Score=131.58 Aligned_cols=97 Identities=19% Similarity=0.352 Sum_probs=81.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
...+|.|+|++|++|...+.++.+||||+|.+..... ...+.+|+++++ +.||.|||+|.|.+..... ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~-~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKK-RISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCc-eeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 3568999999999999998889999999999965421 124778998877 8999999999999875543 33589999
Q ss_pred EEecCCC-CCcceeEEEEeCcc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~ 103 (305)
|||++.+ ++++||++.+++.+
T Consensus 89 v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 89 VLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EEECCCCCCCccEEEEEECCcC
Confidence 9999988 78999999999988
No 74
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.3e-16 Score=124.08 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeC
Q 021949 22 LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPI 101 (305)
Q Consensus 22 ~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL 101 (305)
++|++||||+|.+.+ ....+|+++++ +.||.|||+|.|.+.+.. ...|.|+|||++.++|++||++.|+|
T Consensus 9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~~d~~iG~~~v~L 78 (111)
T cd04052 9 KTGLLSPYAELYLNG-----KLVYTTRVKKK-TNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDRHDPVLGSVSISL 78 (111)
T ss_pred cCCCCCceEEEEECC-----EEEEEEeeecc-CCCCccCCceEEEecCcC----CCEEEEEEEECCCCCCCeEEEEEecH
Confidence 468899999999975 25678998777 799999999999986542 25799999999888889999999999
Q ss_pred cccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949 102 KELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE 145 (305)
Q Consensus 102 ~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~ 145 (305)
.++.... . ....||.|.. +.+|+|+|+++|.+
T Consensus 79 ~~l~~~~----~-----~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 79 NDLIDAT----S-----VGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred HHHHhhh----h-----ccceeEECCC---CCCCEEEEEEEEec
Confidence 9997533 1 2357888863 57899999999986
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.68 E-value=3.5e-16 Score=128.70 Aligned_cols=110 Identities=17% Similarity=0.339 Sum_probs=88.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh-----------ccC
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA-----------QQN 75 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~-----------~~~ 75 (305)
|+|+|++|++|... .+++.||||+|++.... ...+.+|+++++ +.||.|||+|.|.+..... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~--~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSS--KTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCC--cCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccc
Confidence 68999999999988 77899999999998431 136889999887 8999999999999876521 112
Q ss_pred ceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCC
Q 021949 76 RLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSS 130 (305)
Q Consensus 76 ~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~ 130 (305)
...|.|+|||++.+ +++|||++.|+|.++.... ....||.|...+
T Consensus 77 ~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~----------~~~~W~~L~~~~ 122 (137)
T cd08675 77 KSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG----------SHQAWYFLQPRE 122 (137)
T ss_pred ccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC----------cccceEecCCcC
Confidence 35899999999988 8999999999999987433 246788888643
No 76
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=4e-16 Score=128.47 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=82.7
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|.|+|++|++|...+..+..||||++.+..+..+...++||+++++ +.||+|||+|.|.|....+ .+..|.|+
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~~ 89 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMFS 89 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEEE
Confidence 45789999999999999888889999999999764322234679999887 8999999999999976544 34689999
Q ss_pred EEecCCC-CCcceeEEEEeCccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKEL 104 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l 104 (305)
|||.+.+ ++++||++.|.+...
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCC
Confidence 9999877 889999999987754
No 77
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=1.1e-15 Score=121.69 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=84.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|+|+|++|++|+.. +.+||||++++.+ ..+.+|+++++ .||+|||+|.|.+..... ....|.|.+||.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-----~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~ 69 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-----VEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDK 69 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-----EEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEec
Confidence 88999999999876 7899999999975 24678998765 899999999999976432 225788999998
Q ss_pred CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEE
Q 021949 87 GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKF 143 (305)
Q Consensus 87 ~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~ 143 (305)
+.. .+.++|.+. |.++.... ....||.|... ..+..|+|+|+++|
T Consensus 70 ~~~~~~~~~g~v~--l~~~~~~~----------~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 70 RSKDRDIVIGKVA--LSKLDLGQ----------GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred ccCCCeeEEEEEE--ecCcCCCC----------cceeEEECccCCCCCCcCceEEEEEEC
Confidence 766 455566654 44544322 24678888753 34578999999976
No 78
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.67 E-value=7.5e-16 Score=125.37 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=89.4
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
++|.|+|++|++|...+..+..||||+|.+.+...+ ..+.+|+++++ +.||.|||+|.|.+..... ...|.|+||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~-~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~---~~~l~v~v~ 87 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKN-ETKQKTKTIKK-TLNPVWNETFTFDLKPADK---DRRLSIEVW 87 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCC-CceecceeecC-CCCCCccceEEEeCCchhc---CCEEEEEEE
Confidence 679999999999998877788999999999753321 36889999887 7999999999999865431 248999999
Q ss_pred ecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 85 SDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|++.+ .+++||++.++|.++.... ...||.|.+
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~~~-----------~~~w~~L~~ 121 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIKMP-----------VDGWYKLLN 121 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCcCc-----------cCceEECcC
Confidence 99877 7899999999999998422 367898876
No 79
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=1.3e-15 Score=122.62 Aligned_cols=102 Identities=23% Similarity=0.357 Sum_probs=82.9
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v 81 (305)
..++|+|+|++|++|.+.+.++..||||++.+..... ...+.+|+++++ +.||.|||+|.|. +..... .+..|.|
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~ 88 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGAS-KATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRL 88 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCC-CCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEE
Confidence 3578999999999999888888999999999864322 246889999887 7999999999996 432221 2358999
Q ss_pred EEEecCCCCCcceeEEEEeCccccccc
Q 021949 82 KIKSDGLLGDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 82 ~V~d~~~~~d~~IG~~~vpL~~l~~~~ 108 (305)
+|||++.+++++||++.++|.+|..+.
T Consensus 89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 89 LVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 999998778889999999999998543
No 80
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=6.6e-16 Score=126.63 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=80.8
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|...+.+++.||||+|.+..... ...+++|+++++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~ 88 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCc-ccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 4578999999999999988889999999999964321 135678988777 8999999999999865443 23589999
Q ss_pred EEecCCC-CCcceeEEEEeCccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKEL 104 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l 104 (305)
|||++.+ +|++||++.|++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 9999988 789999999998763
No 81
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=6.3e-16 Score=129.23 Aligned_cols=96 Identities=24% Similarity=0.318 Sum_probs=79.6
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-----------------------CCceEEeEecCCCCCCCee
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-----------------------KKQKVKSHVDRSGGSNPTW 59 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-----------------------~~~~~kT~v~k~~~~nP~W 59 (305)
....|+|+|++|++|...+.++++||||+|.+...... .....+|+++++ +.||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCcc
Confidence 46789999999999999998899999999998643110 013578999887 899999
Q ss_pred eceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccccc
Q 021949 60 NFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLD 106 (305)
Q Consensus 60 ne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~ 106 (305)
||+|.|.+.... ...|.|+|||++ +++||++.|+|.++..
T Consensus 105 nE~F~f~v~~~~----~~~L~i~V~D~d---d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDVS----NDQLHLDIWDHD---DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccCC----CCEEEEEEEecC---CCeEEEEEEEHHHhCC
Confidence 999999996532 258999999987 8899999999999983
No 82
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=3.7e-16 Score=126.31 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=78.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.|+|+|++|++|...+.+++.||||+|++.+. ..+.||+++++ +.||+|||+|.|.+.... ...|.|+|||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~----~~~L~~~V~d 71 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK----KINDRDNYIPN-TLNPVFGKMFELEATLPG----NSILKISVMD 71 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe----eccceeeEEEC-CCCCccceEEEEEecCCC----CCEEEEEEEE
Confidence 48999999999999998899999999999763 24467888777 899999999999875432 2589999999
Q ss_pred cCCC-CCcceeEEEEeCccccc
Q 021949 86 DGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
++.+ .|++||++.|+|++...
T Consensus 72 ~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 72 YDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCCCceeEEEEEeeccccc
Confidence 9988 89999999999998774
No 83
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=6.4e-16 Score=126.68 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=80.9
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|...+.+++.||||+|.+..... ...+.+|+++++ +.||.|||+|.|.+...... ...|.|+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~-~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~--~~~l~~~ 88 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDK-RVEKKKTVIKKR-TLNPVFNESFIFNIPLERLR--ETTLIIT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCC-ccccccCcceeC-CCCCcccceEEEeCCHHHhC--CCEEEEE
Confidence 3578999999999999888889999999999853221 135778999887 79999999999998654322 2589999
Q ss_pred EEecCCC-CCcceeEEEEeCccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKEL 104 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l 104 (305)
|||++.+ .|++||++.|++.+.
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC
Confidence 9999888 789999999999875
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=1.9e-15 Score=121.24 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=82.8
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCC
Q 021949 10 NLISAKHLKDVHLISKMDVYAVVSISGDH-TIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGL 88 (305)
Q Consensus 10 ~vvsA~dL~~~~~~gk~dpYv~v~l~~~~-~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~ 88 (305)
..++|++|...+.++++||||+|++.+.. ..+..+.+|+++++ +.||+|||+|.|.+..... ..|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~----~~l~~~V~d~d~ 79 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEV----QKLRFEVYDVDS 79 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEee----eEEEEEEEEecC
Confidence 45899999999989999999999998753 12235789999988 8999999999998653322 479999999986
Q ss_pred ----C-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee
Q 021949 89 ----L-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR 127 (305)
Q Consensus 89 ----~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~ 127 (305)
+ +|++||++.++|.+|+... ....++.|.
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~----------~~~~~~~l~ 113 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSP----------GQKLTLPLK 113 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCC----------CcEEEEEcc
Confidence 5 8899999999999998533 135677774
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=9.8e-16 Score=125.28 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=79.7
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|...+.++++||||+|.+.....+ ..+.+|+++++ +.||+|||+|.|.+...... ...|.|+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~--~~~l~~~ 87 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRR-LKKKKTSVKKN-TLNPTYNEALVFDVPPENVD--NVSLIIA 87 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcc-cceecCCcccC-CCCCcccceEEEECCHHHhC--CCEEEEE
Confidence 45789999999999999998899999999998643211 35778988766 89999999999998655432 2479999
Q ss_pred EEecCCC-CCcceeEEEEeCc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIK 102 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~ 102 (305)
|||++.+ ++++||++.|++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEECCCCCCCceeEEEEECCC
Confidence 9999988 7899999999876
No 86
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=4.3e-15 Score=123.03 Aligned_cols=117 Identities=13% Similarity=0.238 Sum_probs=92.5
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..|.|.|++|++|... -++||+|.+++ ....||+++.+ +.||.|+|+|.|...... ..|.|.||
T Consensus 11 ~sL~v~V~EAk~Lp~~-----~~~Y~~i~Ld~-----~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~-----~~l~v~v~ 74 (146)
T cd04013 11 NSLKLWIIEAKGLPPK-----KRYYCELCLDK-----TLYARTTSKLK-TDTLFWGEHFEFSNLPPV-----SVITVNLY 74 (146)
T ss_pred EEEEEEEEEccCCCCc-----CCceEEEEECC-----EEEEEEEEEcC-CCCCcceeeEEecCCCcc-----cEEEEEEE
Confidence 5689999999999764 37999999987 35679999877 799999999999764432 47889997
Q ss_pred ecC-CC----CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC----------CccEEEEEEEEeccC
Q 021949 85 SDG-LL----GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK----------PKGELHFSYKFSEPT 147 (305)
Q Consensus 85 d~~-~~----~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~----------~~G~l~lsl~~~~~~ 147 (305)
+.+ .. ++++||.+.|++.+|.... ....||+|...+++ ..++|+|+++|.+..
T Consensus 75 k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~----------~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 75 RESDKKKKKDKSQLIGTVNIPVTDVSSRQ----------FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred EccCccccccCCcEEEEEEEEHHHhcCCC----------cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 543 22 5789999999999998533 34789999985443 347999999998754
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.64 E-value=1.7e-15 Score=124.23 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=77.8
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|+|++|++|...+.++..||||++.+.... +...+++|+++++ +.||+|||+|.|.+....+. +..|.|+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~-~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~--~~~l~~~ 87 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL-KLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELE--NVSLVFT 87 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC-cccceEcCccccC-CCCCccceeEEEeCCHHHhC--CCEEEEE
Confidence 457899999999999998888999999999985421 1135688999887 89999999999999655442 2479999
Q ss_pred EEecCCC-CCcceeEEEEeC
Q 021949 83 IKSDGLL-GDKTVGEVIVPI 101 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL 101 (305)
|||++.. ++++||++.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 9999877 899999998754
No 88
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.64 E-value=4.3e-16 Score=126.79 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=81.6
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|++|+..+..+..||||++++..... ...+.+|+++++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK-KLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe-EeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEE
Confidence 4578999999999999988888999999999976431 124678999877 7999999999999876543 23589999
Q ss_pred EEecCCC-CCcceeEEEEeCcc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~ 103 (305)
|||.+.+ .+++||++.|+|.+
T Consensus 88 v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 88 VVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EEecCCCCCCceeEEEEECCCC
Confidence 9999886 78999999999999
No 89
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.64 E-value=2e-15 Score=123.13 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=80.4
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|.|+|++|++|+..+..+..||||+|++.....+ ..++||++.++...||.|||+|.|+|.... .+..|.|+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~-~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v~ 87 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL-LYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLIK 87 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc-ceeecCccEECCCCCceecceEEEeCCchh---heeEEEEE
Confidence 45789999999999998654456799999999865443 578999998873357999999999998653 23789999
Q ss_pred EEecCCC-CCcceeEEEEeCccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKEL 104 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l 104 (305)
|||++.. ++++||++.+.+++.
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEeCCCCcCCceEEEEEECCccC
Confidence 9999877 899999999998764
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=5.4e-15 Score=117.58 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=67.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|+|+|++|++|+ +..||||++.+...... ..+.||+++++ +.||+|||+|.|.+... ..|.|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~-~~~~KTk~i~~-TlnPvWnE~F~i~l~~s------~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYF-VKKAKTRVCRD-TTEPNWNEEFEIELEGS------QTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCcccc-ceeeeeeeecC-CCCCccceEEEEEeCCC------CEEEEEEEEc
Confidence 689999999996 34899999998764321 25799999988 89999999999999632 4899999998
Q ss_pred C-------CC-CCcceeEEEEeCcc
Q 021949 87 G-------LL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 87 ~-------~~-~d~~IG~~~vpL~~ 103 (305)
+ .. .|++||++.|.|+-
T Consensus 68 ~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 68 CYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccccccCcccEEEEEEEEECH
Confidence 3 33 68999887777644
No 91
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=2e-15 Score=124.10 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=80.1
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..++|+|+|++|+||...+ ++.+|+||+|++...... ..++||+++++ +.||+|||+|.|.|....+. ...|.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~-~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~--~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV-VKTKKTEVVDG-AASPSFNESFSFKVTSRQLD--TASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE-eeeeecccEeC-CCCCcccceEEEECCHHHhC--ccEEEEE
Confidence 3478999999999999888 788999999999864321 24778999776 89999999999999766543 3689999
Q ss_pred EEecCCC-CCcceeEEEEeCccc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKEL 104 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l 104 (305)
||+.+.. ++++||++.|.....
T Consensus 88 V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 88 VMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EEeCCCCCCcceEEEEEECCccc
Confidence 9999877 789999999986544
No 92
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.62 E-value=5.3e-15 Score=116.62 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=77.5
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecC
Q 021949 8 DLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDG 87 (305)
Q Consensus 8 ~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~ 87 (305)
.+..++|++|+..+.++++||||+|++.++......+++|+++++ +.||+|| +|.|.+......+....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 455679999999999999999999998764322245799999988 7999999 67777643322111358999999999
Q ss_pred CC-CCcceeEEEEeCccccc
Q 021949 88 LL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 88 ~~-~d~~IG~~~vpL~~l~~ 106 (305)
.+ +|++||++.++|.+|..
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhc
Confidence 88 78999999999999984
No 93
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.62 E-value=2e-15 Score=164.33 Aligned_cols=121 Identities=16% Similarity=0.358 Sum_probs=101.0
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
.+.|.|+|++|+||+ ..++++||||++.+++. .+.||+++++ +.||+|||+|.|.++.... +..|+|+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~---~~~l~iev 2047 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSH-SSSPEWKEGFTWAFDSPPK---GQKLHISC 2047 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCC-CCCCCcccceeeeecCCCC---CCceEEEE
Confidence 378999999999998 55789999999999962 4779999998 7999999999998876542 24799999
Q ss_pred EecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccE---EEEEEEEecc
Q 021949 84 KSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGE---LHFSYKFSEP 146 (305)
Q Consensus 84 ~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~---l~lsl~~~~~ 146 (305)
||++.++++.+|.+.|+|.+++.+. ....||.|.. +++..|+ |+|+|+|..+
T Consensus 2048 ~d~d~f~kd~~G~~~i~l~~vv~~~----------~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2048 KSKNTFGKSSLGKVTIQIDRVVMEG----------TYSGEYSLNP-ESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred EecCccCCCCCceEEEEHHHHhcCc----------eeeeeeecCc-ccccCCCcceEEEEEEecCC
Confidence 9999997779999999999999644 2477899984 4555666 9999998753
No 94
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.7e-15 Score=141.86 Aligned_cols=129 Identities=24% Similarity=0.280 Sum_probs=105.8
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
....|.|+|+.|++|...+..+.+||||++++..+. ..+.+|+|+++ ++||.|||+|.|.|....+. ...|.|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk---~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~--~~~L~l~ 238 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK---KGKFKTRVHRK-TLNPVFNETFRFEVPYEELS--NRVLHLS 238 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC---CCcceeeeeec-CcCCccccceEeecCHHHhc--cCEEEEE
Confidence 356799999999999988855789999999999875 57999999988 89999999999998766443 3699999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC---CCCCccEEEEEEEEeccC
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS---SGKPKGELHFSYKFSEPT 147 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~---~g~~~G~l~lsl~~~~~~ 147 (305)
|||.+.| +|++||++.|+|.++.... ....|+.+... .....|+|.|+++|.+..
T Consensus 239 V~~~drfsr~~~iGev~~~l~~~~~~~----------~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 239 VYDFDRFSRHDFIGEVILPLGEVDLLS----------TTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred EEecCCcccccEEEEEEecCccccccc----------cceeeeccccccCCcccccceEEEEEEeecCC
Confidence 9999998 8999999999999987533 13556666653 222338999999999873
No 95
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.7e-16 Score=145.10 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=93.7
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
...|+|+|.+|++|...+.+|.+||||.+.+..++.. ..++||++++. ++||+|||+|+|.+..... +..|.|+|
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~-~sKqKTkTik~-~LNP~wNEtftf~Lkp~Dk---drRlsiEv 253 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKN-ESKQKTKTIKA-TLNPVWNETFTFKLKPSDK---DRRLSIEV 253 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcc-hhhhhhhhhhh-hcCccccceeEEecccccc---cceeEEEE
Confidence 3568999999999999999999999999999876543 57899999998 8999999999999987653 46899999
Q ss_pred EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
|||+.. +++|+|...+.++||.... ...||.|..
T Consensus 254 WDWDrTsRNDFMGslSFgisEl~K~p-----------~~GWyKlLs 288 (683)
T KOG0696|consen 254 WDWDRTSRNDFMGSLSFGISELQKAP-----------VDGWYKLLS 288 (683)
T ss_pred ecccccccccccceecccHHHHhhcc-----------hhhHHHHhh
Confidence 999877 8999999999999998644 245777765
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.52 E-value=1.1e-13 Score=102.70 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=72.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|+|+|++|++|...+..++.|+||++++.... ..+.+|+++++ +.+|.|||+|.|.+..... ..|.|+|||+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~ 72 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE---STKYKTKVKKN-TSNPVWNEEFEFPLDDPDL----DSLSFEVWDK 72 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT---CEEEEECCBSS-BSSEEEEEEEEEEESHGCG----TEEEEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee---eeeeeeeeeec-cccceeeeeeeeeeecccc----cceEEEEEEC
Confidence 78999999999988777899999999999753 24699999888 6999999999999866554 3599999999
Q ss_pred CCC-CCcceeEEE
Q 021949 87 GLL-GDKTVGEVI 98 (305)
Q Consensus 87 ~~~-~d~~IG~~~ 98 (305)
+.. .|++||++.
T Consensus 73 ~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 73 DSFGKDELIGEVK 85 (85)
T ss_dssp TSSSSEEEEEEEE
T ss_pred CCCCCCCEEEEEC
Confidence 988 599999974
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2e-13 Score=132.45 Aligned_cols=118 Identities=17% Similarity=0.302 Sum_probs=97.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
-++.++|+.|.+|...+..|++||||++.++. .+.||+++.. .+||+|||+|+|++.++. ..|+|.||
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~-~lnpvw~ekfhfechnst-----drikvrvw 362 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQ-ELNPVWNEKFHFECHNST-----DRIKVRVW 362 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhh-ccchhhhhheeeeecCCC-----ceeEEEEe
Confidence 35889999999999999999999999999986 6788888877 799999999999998875 48999999
Q ss_pred ecCC---------C---CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEecc
Q 021949 85 SDGL---------L---GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEP 146 (305)
Q Consensus 85 d~~~---------~---~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~ 146 (305)
|++. + .|+|+|+..|.+++|.. . ..+||.|.+. .....|.|+|.|.+.=+
T Consensus 363 ded~dlksklrqkl~resddflgqtvievrtlsg-e-----------mdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 363 DEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSG-E-----------MDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred cCcccHHHHHHHHhhhcccccccceeEEEEeccc-c-----------hhhhcchhhccchhhccceEEEEEEEEEc
Confidence 9864 1 58899999999888763 2 3678888764 34478888777766544
No 98
>PLN02223 phosphoinositide phospholipase C
Probab=99.44 E-value=1.9e-12 Score=126.13 Aligned_cols=120 Identities=21% Similarity=0.365 Sum_probs=90.7
Q ss_pred ceEEEEEEEecCCC-C----CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEE
Q 021949 5 RALDLNLISAKHLK-D----VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTL 79 (305)
Q Consensus 5 ~~L~V~vvsA~dL~-~----~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L 79 (305)
.+|.|+|++++.|. + .+.....||||+|.|.+-+.+ ..+++|+|. +++.||.|||+|.|.|...++ ..|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~-nNg~nPvWne~F~F~i~~PEL----AlL 482 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVK-NNEWKPTWGEEFTFPLTYPDL----ALI 482 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeC-CCCcCceecceeEEEEEccCc----eEE
Confidence 57999999999863 1 123456899999999875443 356678765 558999999999999877654 579
Q ss_pred EEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949 80 DFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF 143 (305)
Q Consensus 80 ~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~ 143 (305)
.|+|+|++.. .|+|||+..+|+.+|.. + .++.+|++..|+. .-+|.+.+.|
T Consensus 483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~-G------------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 483 SFEVYDYEVSTADAFCGQTCLPVSELIE-G------------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEEEecCCCCCCcEEEEEecchHHhcC-C------------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9999999877 78999999999999984 2 4566888877764 3344444443
No 99
>PLN02270 phospholipase D alpha
Probab=99.41 E-value=2.6e-12 Score=129.78 Aligned_cols=126 Identities=16% Similarity=0.291 Sum_probs=104.5
Q ss_pred ccceEEEEEEEecCCCCCC-----------------C-CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEE
Q 021949 3 SYRALDLNLISAKHLKDVH-----------------L-ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIK 64 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~-----------------~-~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~ 64 (305)
-+++|+|+|++|++|++.+ . .+.+|+||+|.+.+ .+..||+++++...||.|||+|.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceE
Confidence 3689999999999998621 0 13579999999987 47899999987557999999999
Q ss_pred EEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC---ccEEEEEE
Q 021949 65 FTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP---KGELHFSY 141 (305)
Q Consensus 65 f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~---~G~l~lsl 141 (305)
+.+.... ..|+|.|+|.+.++..+||.+.||+.+|+... .-..||.+...++++ .-+|+|++
T Consensus 81 i~~ah~~-----~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~----------~i~~~~~~~~~~~~p~~~~~~~~~~~ 145 (808)
T PLN02270 81 IYCAHMA-----SNIIFTVKDDNPIGATLIGRAYIPVEEILDGE----------EVDRWVEILDNDKNPIHGGSKIHVKL 145 (808)
T ss_pred EeeccCc-----ceEEEEEecCCccCceEEEEEEEEHHHhcCCC----------ccccEEeccCCCCCcCCCCCEEEEEE
Confidence 9997765 58999999999999899999999999998643 236789999887764 24899999
Q ss_pred EEeccCC
Q 021949 142 KFSEPTV 148 (305)
Q Consensus 142 ~~~~~~~ 148 (305)
+|.+...
T Consensus 146 ~f~~~~~ 152 (808)
T PLN02270 146 QYFEVTK 152 (808)
T ss_pred EEEEccc
Confidence 9998654
No 100
>PLN02952 phosphoinositide phospholipase C
Probab=99.39 E-value=6e-12 Score=124.83 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=95.0
Q ss_pred cceEEEEEEEecCCCC------CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949 4 YRALDLNLISAKHLKD------VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~------~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~ 77 (305)
..+|.|+|+++.+|.. .+.+...|+||+|.+.+-+.. ..+.+|+++++ +.||.|||+|.|.+...++ .
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D-~~~~kTkvi~n-N~nPvWnE~F~F~i~~PEL----A 542 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPAD-NAKKKTKIIED-NWYPAWNEEFSFPLTVPEL----A 542 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCC-CcceeeeeccC-CCCcccCCeeEEEEEcCCc----c
Confidence 3679999999988742 122344699999999875443 46779999988 5999999999999876554 4
Q ss_pred EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS 144 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~ 144 (305)
.|.|+|||++.. .|+|||++.|||..|.. + .++++|++..|+..+.++|-|+|.
T Consensus 543 llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~-G------------yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 543 LLRIEVREYDMSEKDDFGGQTCLPVSELRP-G------------IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEEEEecCCCCCCCeEEEEEcchhHhcC-C------------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 789999999877 78999999999999984 2 347789888888766666666653
No 101
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.37 E-value=2.1e-12 Score=126.64 Aligned_cols=128 Identities=16% Similarity=0.274 Sum_probs=107.8
Q ss_pred CCccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949 1 MASYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD 80 (305)
Q Consensus 1 m~~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~ 80 (305)
|+-...|.|+|.+|++|...+..+..|+||+|.++.+ ...||.++.+ ++.|.|.|+|.|+|+... ..|.
T Consensus 1 ~~~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E-----~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-----~~l~ 69 (800)
T KOG2059|consen 1 VRVEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE-----EVCRTATVEK-SLCPFFGEEFYFEIPRTF-----RYLS 69 (800)
T ss_pred CccccceeEEEeecccCCCCCCCCCcCcceEEeecch-----hhhhhhhhhh-hcCCccccceEEecCcce-----eeEE
Confidence 4455779999999999999988899999999999985 6889999988 899999999999998765 5899
Q ss_pred EEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee--cCCCCCccEEEEEEEEeccCCC
Q 021949 81 FKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR--SSSGKPKGELHFSYKFSEPTVG 149 (305)
Q Consensus 81 v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~--~~~g~~~G~l~lsl~~~~~~~~ 149 (305)
|-|||++..+|+.||.+.|.=++|.... + ...|+.|+ +++.+.+|+|+|++++.+...+
T Consensus 70 fYv~D~d~~~D~~IGKvai~re~l~~~~-----~-----~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 70 FYVWDRDLKRDDIIGKVAIKREDLHMYP-----G-----KDTWFSLQPVDPDSEVQGKVHLELALTEAIQS 130 (800)
T ss_pred EEEeccccccccccceeeeeHHHHhhCC-----C-----CccceeccccCCChhhceeEEEEEEeccccCC
Confidence 9999999338999999999988887433 2 23455554 5788899999999999987654
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.37 E-value=8.9e-12 Score=94.45 Aligned_cols=94 Identities=30% Similarity=0.495 Sum_probs=78.8
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
+|.|+|+++++|.........++||++++.... ....+|+++++ +.||.|||+|.|.+.... ...|.|+||+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~l~i~v~~ 72 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAELEIEVYD 72 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecC-CCCCcccceEEEEecCcc----cCEEEEEEEe
Confidence 478999999999887766678999999998632 25789998877 579999999999997653 2589999999
Q ss_pred cCCC-CCcceeEEEEeCcccccc
Q 021949 86 DGLL-GDKTVGEVIVPIKELLDS 107 (305)
Q Consensus 86 ~~~~-~d~~IG~~~vpL~~l~~~ 107 (305)
++.. .+.+||.+.++|.++...
T Consensus 73 ~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 73 KDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred cCCccCCceeEEEEEEHHHcccC
Confidence 9877 689999999999998753
No 103
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=4.8e-12 Score=103.14 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=78.4
Q ss_pred eEEEEEEEecCCCC--CCCCCC--CCcEEEEEEecCCCCCCceEEeEecCCCCCC--CeeeceEEEEeccchh-------
Q 021949 6 ALDLNLISAKHLKD--VHLISK--MDVYAVVSISGDHTIKKQKVKSHVDRSGGSN--PTWNFPIKFTFNQSLA------- 72 (305)
Q Consensus 6 ~L~V~vvsA~dL~~--~~~~gk--~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~n--P~Wne~f~f~v~~~~~------- 72 (305)
.|+|.|.+|+++.. .+..++ +|+||++++.... ..+++|.|+.+ ++| |.||+.|.|++.....
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~---~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~ 76 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE---EDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVI 76 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCc---ccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEE
Confidence 48999999999554 334564 9999999998752 47899999988 788 9999999998766211
Q ss_pred ------------ccCceEEEEEEEecCCC-CCcceeEEEEeCccccc
Q 021949 73 ------------QQNRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 73 ------------~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~ 106 (305)
......|+|+|||.+.+ .|++||++.++|..+..
T Consensus 77 ~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 77 KKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred eeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 12346899999999998 79999999999999875
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.34 E-value=6.6e-12 Score=129.12 Aligned_cols=128 Identities=22% Similarity=0.307 Sum_probs=104.1
Q ss_pred ccceEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949 3 SYRALDLNLISAKHLKDVH--LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD 80 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~--~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~ 80 (305)
+.++|+|+|.+|++|+..+ ..++.|||+++.+.. ...-||++.++ +.||+|||+|-+.|.... ..|.
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~-----r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~-----d~L~ 502 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD-----RVIGKTRVKKN-TLNPVWNETFYILLNSFT-----DPLN 502 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEecc-----ccCCccceeec-cCCccccceEEEEecccC-----Ccee
Confidence 4689999999999999887 458899999999776 35669999887 899999999999886543 4899
Q ss_pred EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCCCC
Q 021949 81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVGKT 151 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~~~ 151 (305)
|+|||.+.+ .|+++|++.++|..|..+. . .....+++++ +.+..|.|+++++|.+...++.
T Consensus 503 LslyD~n~~~sd~vvG~~~l~L~~L~~~~----~-----~~ne~~e~~~-~~k~vGrL~yDl~ffp~~e~k~ 564 (1227)
T COG5038 503 LSLYDFNSFKSDKVVGSTQLDLALLHQNP----V-----KKNELYEFLR-NTKNVGRLTYDLRFFPVIEDKK 564 (1227)
T ss_pred EEEEeccccCCcceeeeEEechHHhhhcc----c-----cccceeeeec-cCccceEEEEeeeeecccCCcc
Confidence 999997766 8999999999999998644 1 2233556654 5678999999999998765443
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-11 Score=122.96 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=97.3
Q ss_pred eEEEEEEEecCCCC-CCC--C-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 6 ALDLNLISAKHLKD-VHL--I-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 6 ~L~V~vvsA~dL~~-~~~--~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
+|.|+|++++++.. ... + ...||||.|.|.+-+.. ..+.+|+++++++.||.|+|+|.|.|...++ ..|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF 691 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRF 691 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEE
Confidence 79999999995533 221 2 45899999999875543 5789999888889999999999999987765 57999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC--CccEEEEEEEEec
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK--PKGELHFSYKFSE 145 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~--~~G~l~lsl~~~~ 145 (305)
+|+|.+.. .|+|+|+..+|+.+|.. + .+.++|.+..|+ ..-+|.|.|++.+
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~-G------------yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQ-G------------YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhC-c------------eeeeeecCCCCccccceeEEEEEEEec
Confidence 99999988 69999999999999984 3 345677776665 4677888888765
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.32 E-value=1.8e-11 Score=92.17 Aligned_cols=89 Identities=35% Similarity=0.531 Sum_probs=76.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
|.|+|++|++|.........++||++++.. ....+|++++. +.||.||+.|.|.+... ....|.|+||++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~ 70 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDK 70 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEec
Confidence 579999999998866667899999999986 26788988877 68999999999999763 125899999999
Q ss_pred CCC-CCcceeEEEEeCcccc
Q 021949 87 GLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 87 ~~~-~d~~IG~~~vpL~~l~ 105 (305)
+.. .+++||++.+++.++.
T Consensus 71 ~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 71 DRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCCCCceeEEEEEeHHHhh
Confidence 877 5899999999999987
No 107
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.31 E-value=2.4e-11 Score=120.45 Aligned_cols=121 Identities=16% Similarity=0.263 Sum_probs=92.0
Q ss_pred cceEEEEEEEecCCC----C--CCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949 4 YRALDLNLISAKHLK----D--VHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~----~--~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~ 77 (305)
..+|.|+|+++.++. . .+.++..|+||+|.|.+.+.+ ..+.+|+|..+ +.||.|||+|.|.+...++ .
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D-~~~~kT~v~~n-~~nP~Wneef~F~l~vPEL----A 541 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVD-EVMEKTKIEYD-TWTPIWNKEFIFPLAVPEL----A 541 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCC-CcccceeccCC-CCCCccCCeeEEEEEcCce----e
Confidence 367999999999763 1 122345799999999875433 35678887665 7999999999999876654 5
Q ss_pred EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF 143 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~ 143 (305)
.|.|+|+|++.. +|+|||+..|||.+|.. + .+.++|++..|.. .-+|.+.++|
T Consensus 542 llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~-G------------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 542 LLRVEVHEHDINEKDDFGGQTCLPVSEIRQ-G------------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEEEECCCCCCCCEEEEEEcchHHhhC-c------------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 899999999886 89999999999999984 2 3456888776653 4456666655
No 108
>PLN02228 Phosphoinositide phospholipase C
Probab=99.30 E-value=5.1e-11 Score=117.58 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=96.5
Q ss_pred ceEEEEEEEecCCCC----C--CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCee-eceEEEEeccchhccCce
Q 021949 5 RALDLNLISAKHLKD----V--HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~----~--~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~ 77 (305)
.+|+|+|++++.|.. . +.....|+||+|.+.+.+.. ..+++|+++++ +.||.| ||+|.|.+...++ .
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL----A 504 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-TVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL----A 504 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-CCcceeeccCC-CCCceECCCeEEEEEEcCce----e
Confidence 469999999998721 1 12345899999999875433 35789999877 589999 9999999876554 5
Q ss_pred EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEeccC
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSEPT 147 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~~~ 147 (305)
.|.|.|+|++.. .|+|||+..|||..|.. + .+.++|++..|+. ..+|.+.+.+.+..
T Consensus 505 ~lRf~V~D~d~~~~d~figq~~lPv~~Lr~-G------------YR~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 505 LLWFKVQDYDNDTQNDFAGQTCLPLPELKS-G------------VRAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEEEEEeCCCCCCCCEEEEEEcchhHhhC-C------------eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 899999998866 78999999999999973 3 4567888877764 56788888887653
No 109
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.28 E-value=5.9e-11 Score=117.43 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=91.9
Q ss_pred cceEEEEEEEecCCC----CC--CCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCce
Q 021949 4 YRALDLNLISAKHLK----DV--HLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~----~~--~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~ 77 (305)
..+|.|+|+++.++. .. +.+...|+||+|.|.+-+.. ..+.+|+++++ +.||.|||+|.|.+...++ .
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----A 524 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----A 524 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCC-CCCcccCCeeEEEEEcCce----e
Confidence 357999999998742 21 22356799999999864433 36779999988 4899999999998876554 5
Q ss_pred EEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEE
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKF 143 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~ 143 (305)
.|.|+|+|++.. .|+|||+..|||..|.. + .+.++|++..|.. .-+|.+.++|
T Consensus 525 llRf~V~d~D~~~~ddfigq~~lPv~~Lr~-G------------yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 525 LLRLEVHEYDMSEKDDFGGQTCLPVWELSQ-G------------IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEEEECCCCCCCcEEEEEEcchhhhhC-c------------cceEEccCCCcCCCCCeeEEEEEEe
Confidence 899999998876 78999999999999984 2 3466888776653 4466666665
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.28 E-value=1.1e-11 Score=95.92 Aligned_cols=85 Identities=12% Similarity=0.306 Sum_probs=72.4
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 7 LDLNLISAKHLKDVH---LISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 7 L~V~vvsA~dL~~~~---~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
|.|+|.+++||.... ++++.|+||++.++. ..+.||++ ++|+.|||+|.|+|+.. .+|.|.|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~----srnd~WnE~F~i~Vdk~------nEiel~V 65 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP----SRNDRWNEDFEIPVEKN------NEEEVIV 65 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC----CCCCcccceEEEEecCC------cEEEEEE
Confidence 689999999999877 568889999999987 46888887 47999999999999542 4899999
Q ss_pred EecCCCCCcceeEEEEeCccccc
Q 021949 84 KSDGLLGDKTVGEVIVPIKELLD 106 (305)
Q Consensus 84 ~d~~~~~d~~IG~~~vpL~~l~~ 106 (305)
||+.......||...|.|.+|..
T Consensus 66 yDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 66 YDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EeCCCCeecceeeehhhHHHHHH
Confidence 99865555679999999999975
No 111
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.3e-11 Score=117.45 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=83.9
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|.|++|++|+..+..+..|+||++++.... +...++||.+.++ +.||+|||+|.|.|....+. +..|.|+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~--~~~l~l~ 371 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLA--EVSLELT 371 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC-ceeeeeeeecccC-CCCCcccccEEEeCCHHHhh--eeEEEEE
Confidence 458899999999999999888999999999988765 4467899998777 89999999999999876653 3689999
Q ss_pred EEecCCC-CCcceeEEEEeCcc
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKE 103 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~ 103 (305)
|||++.+ .+++||++.+-...
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999998 77899999887664
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.17 E-value=7.9e-11 Score=121.34 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=101.3
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..+.|+|.+.++.+|+..+..+.+||||++.+.. ...++|+++|+ ++||+|||+|.++|.+... ..|.|.
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~-----k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~----D~~~i~ 1107 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE-----KSVYKTKVVKK-TLNPVWNEEFTIEVLNRVK----DVLTIN 1107 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecc-----eecccccchhc-cCCCCccccceEeeecccc----ceEEEE
Confidence 3678999999999999999999999999999987 36899999998 8999999999999976543 378999
Q ss_pred EEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC-CCCCccEEEEEEEEeccCC
Q 021949 83 IKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS-SGKPKGELHFSYKFSEPTV 148 (305)
Q Consensus 83 V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~-~g~~~G~l~lsl~~~~~~~ 148 (305)
|+||+.. ++++||.+.++|..|..+. . ....+.|..+ .....|++++.+.|..+..
T Consensus 1108 v~Dwd~~~knd~lg~~~idL~~l~~~~------~----~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038 1108 VNDWDSGEKNDLLGTAEIDLSKLEPGG------T----TNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred EeecccCCCccccccccccHhhcCcCC------c----cceeeeccCcceEecccEeecceecchhhh
Confidence 9999887 8899999999999998644 1 1222333322 2356788888888887755
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.04 E-value=1.6e-09 Score=107.93 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=96.2
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeee-ceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWN-FPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wn-e~f~f~v~~~~~~~~~~~L~v~V 83 (305)
-+|.|.|+.||.|.+.+ .+-..|||+|.|.+...+ ..+++|+++.++++||+|| |+|+|+|.+... ..|.|.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~D-t~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V 1138 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYD-TNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVV 1138 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccC-CCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEE
Confidence 46889999999998554 234569999999887665 4566666666669999999 999999987765 6899999
Q ss_pred EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC--CCCCccEEEEEEEEeccCCC
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS--SGKPKGELHFSYKFSEPTVG 149 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~--~g~~~G~l~lsl~~~~~~~~ 149 (305)
++++.+ ...||+++..|+..|.. + .++..|+.. +.-.-.+|.|.|++.+....
T Consensus 1139 ~eeDmfs~~~FiaqA~yPv~~ik~-G------------fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1139 YEEDMFSDPNFLAQATYPVKAIKS-G------------FRSVPLKNGYSEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred ecccccCCcceeeeeecchhhhhc-c------------ceeeecccCchhhhhhhhheeeeEeccccCc
Confidence 999999 45699999999999874 2 345566653 12245667788888776553
No 114
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-10 Score=114.85 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=95.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-------------------------CCceEEeEecCCCCCCCeeec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI-------------------------KKQKVKSHVDRSGGSNPTWNF 61 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~-------------------------~~~~~kT~v~k~~~~nP~Wne 61 (305)
|.|.+.+|+||.+++..|.+|||+.+.+.....+ .+-.+-|.|.+. |+||.|+|
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~-TLnPkW~E 194 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK-TLNPKWSE 194 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc-cCCcchhh
Confidence 4566788999999988899999999877432110 012244666655 99999999
Q ss_pred eEEEEeccchhccCceEEEEEEEecCC---------------------------------C----CCcceeEEEEeCccc
Q 021949 62 PIKFTFNQSLAQQNRLTLDFKIKSDGL---------------------------------L----GDKTVGEVIVPIKEL 104 (305)
Q Consensus 62 ~f~f~v~~~~~~~~~~~L~v~V~d~~~---------------------------------~----~d~~IG~~~vpL~~l 104 (305)
+|.|+|.+-. +..+++.|||++. . .|||+|.+.|+|.||
T Consensus 195 kF~F~IeDv~----tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 195 KFQFTIEDVQ----TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred heeeehhccc----cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999997653 2489999999864 1 378999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCC
Q 021949 105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVG 149 (305)
Q Consensus 105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~ 149 (305)
-..+ - .+|..++.|....++.|.++|.+++..+...
T Consensus 271 P~~G------l---d~WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 271 PPDG------L---DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred Ccch------H---HHHhccCcccccccccceEEEEEEEeeeccc
Confidence 8644 1 1344445555567899999999999876543
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=104.69 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=103.3
Q ss_pred cceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeece-EEEEeccchhccCceEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFP-IKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~-f~f~v~~~~~~~~~~~L~v 81 (305)
-++|.|+|..+|+|...+.. ...|.||++.+.+ ..+||.|-.+ ++||.||.. |+|+|++.++++ ..|.|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~k-slnp~wnsdwfkfevddadlqd--eplqi 72 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQD--EPLQI 72 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc------cceehhhhhh-hcCCcccccceEEecChhhhcc--CCeeE
Confidence 36799999999999988765 4579999999987 7899999887 799999954 899999887765 58999
Q ss_pred EEEecCCC-CCcceeEEEEeCccccccc-CCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSS-SSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~-~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
.+.|++.. .++-||.+.|+|+.|.... ..+..+.| .....|+.+.+.--..+|+|++-+++
T Consensus 73 ~lld~dtysandaigkv~i~idpl~~e~aaqavhgkg-tvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 73 RLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKG-TVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred EEecccccccccccceeeeccChHHHHhHHhhhcCCc-eEEeeeeecceecccccceeEEEEEE
Confidence 99999988 7889999999999885432 11222333 24477999987555578999888775
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.92 E-value=3.6e-10 Score=111.35 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=87.0
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
+..+|.|.|+.|+|+...+.+|.+||||+|.+..... --...++|+|++. ++||+|+|+|.|.|+.+....+...|.|
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence 4578899999999999999999999999999986321 1135789999888 8999999999999987765445678999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccc
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~ 105 (305)
+|+|++-+ .+||-|++.+-|.++.
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCC
Confidence 99999988 8999999999999885
No 117
>PLN02352 phospholipase D epsilon
Probab=98.91 E-value=1.1e-08 Score=103.56 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=91.3
Q ss_pred cceEEEEEEEecCCCCC----CCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceE
Q 021949 4 YRALDLNLISAKHLKDV----HLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLT 78 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~----~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~ 78 (305)
+++|+|||.+|+-+... ... ...|+||+|.+.+ .+..|| ++ ..||.|||+|.+.+..... ..
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----~~v~rt---~~-~~~p~w~e~f~i~~ah~~~----~~ 75 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-----KKVAKT---SH-EYDRVWNQTFQILCAHPLD----ST 75 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-----cEEecC---CC-CCCCccccceeEEeeeecC----Cc
Confidence 68999999999854332 111 1229999999987 467788 34 5699999999999976541 36
Q ss_pred EEEEEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC-c-cEEEEEEEEeccCCC
Q 021949 79 LDFKIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP-K-GELHFSYKFSEPTVG 149 (305)
Q Consensus 79 L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~-~-G~l~lsl~~~~~~~~ 149 (305)
|+|.|+| +..+||.+.||+.+|+... +....|+++...++++ . .+|+|+++|.+...+
T Consensus 76 ~~f~vk~----~~~~ig~~~~p~~~~~~g~---------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 76 ITITLKT----KCSILGRFHIQAHQIVTEA---------SFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred EEEEEec----CCeEEEEEEEEHHHhhCCC---------cccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 8999988 4679999999999998643 1247799999877764 3 489999999987653
No 118
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.65 E-value=1.7e-08 Score=94.25 Aligned_cols=133 Identities=16% Similarity=0.241 Sum_probs=99.5
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch---h----ccCce
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL---A----QQNRL 77 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~---~----~~~~~ 77 (305)
..|+++|+++.++...+---..|-|+.+.+.-.. +...+.+|.|+++ +.+|.|+|.|.+.+.... . ...+.
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 4577888888887654422235678888765332 2257899999998 899999999999986611 1 11246
Q ss_pred EEEEEEEecCCC--CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCCC
Q 021949 78 TLDFKIKSDGLL--GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTVG 149 (305)
Q Consensus 78 ~L~v~V~d~~~~--~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~~ 149 (305)
.++|+||++..| +|+|+|.+.|.|..|.+.- ++ ...|.|.+......|+|.++|+++....+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~c---------ei-~e~~~l~DGRK~vGGkLevKvRiR~Pi~~ 508 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMC---------EI-CEYLPLKDGRKAVGGKLEVKVRIRQPIGD 508 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhccc---------ch-hhceeccccccccCCeeEEEEEEecccch
Confidence 799999999877 7999999999999887533 22 55678877656678999999999987654
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.60 E-value=3.8e-08 Score=101.56 Aligned_cols=112 Identities=23% Similarity=0.255 Sum_probs=89.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEE-eccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFT-FNQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~-v~~~~~~~~~~~L~v 81 (305)
.+++|.|.|..+++|....-....||||++++..+..+ ..|+||+|+++ ++||+|||.+... ++...+.. .+|.+
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k-~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~q--ReLQ~ 1597 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRK-TSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQ--RELQV 1597 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchH-hhhhhhccccc-cCCCchhhheeecCCchhhhhh--heeee
Confidence 35789999999999965444567899999999988765 57899999998 8999999999887 44444432 58999
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
.||....+ .+.|+|.+.|+|.++.... ....||.|-.
T Consensus 1598 sVls~~~~~en~~lg~v~i~L~~~~l~k----------E~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1598 SVLSNGGLLENVFLGGVNIPLLKVDLLK----------ESVGWYNLGA 1635 (1639)
T ss_pred eeecccceeeeeeeeeeecchhhcchhh----------hhcceeeccc
Confidence 99998887 7889999999999986533 1357888753
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.53 E-value=1.9e-07 Score=92.44 Aligned_cols=113 Identities=23% Similarity=0.383 Sum_probs=82.0
Q ss_pred CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch-----------hccCceEEEEEEEecC-CC-
Q 021949 23 ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL-----------AQQNRLTLDFKIKSDG-LL- 89 (305)
Q Consensus 23 ~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~-----------~~~~~~~L~v~V~d~~-~~- 89 (305)
++.+|||+++...+..- ....+|++.+. +.+|.|||.|.|.+...+ .+.....|+|++|++. ..
T Consensus 148 ~~~~dp~~~v~~~g~~~--~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~ 224 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSK--LKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVI 224 (800)
T ss_pred CCCCCcceEEeecccch--hhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhh
Confidence 35699999999876331 23478988888 899999999999987651 1112478999999954 34
Q ss_pred CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC-------CCCCccEEEEEEEEeccCC
Q 021949 90 GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS-------SGKPKGELHFSYKFSEPTV 148 (305)
Q Consensus 90 ~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~-------~g~~~G~l~lsl~~~~~~~ 148 (305)
++.|+|+++|++..+.... + ...||.|+.. ++..-|.+++.+++.+.-.
T Consensus 225 ~~~FlGevrv~v~~~~~~s-----~-----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 225 NDVFLGEVRVPVDVLRQKS-----S-----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred hhhhceeEEeehhhhhhcc-----C-----ccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 6899999999999987322 1 2446666642 2335789999999988643
No 121
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.47 E-value=4.4e-07 Score=72.65 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEEEEecCCCCC---------CCC----CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEec-----
Q 021949 7 LDLNLISAKHLKDV---------HLI----SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFN----- 68 (305)
Q Consensus 7 L~V~vvsA~dL~~~---------~~~----gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~----- 68 (305)
|.|.|++|.+|+.. ++. --.|.||++.+..-+. ....+|+++.+ +..|+||..++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~--~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~ 77 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE--KELRRTRTVAR-SFCPEFNHHVEFPCNLVVQR 77 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC--Cceeeccchhh-hcCCCccceEEEecccEEEc
Confidence 57889999988631 111 1268999999765322 37888999887 899999999999886
Q ss_pred ---c---chhccCceEEEEEEEecCCC-----------CCcceeEEEEeCccccccc
Q 021949 69 ---Q---SLAQQNRLTLDFKIKSDGLL-----------GDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 69 ---~---~~~~~~~~~L~v~V~d~~~~-----------~d~~IG~~~vpL~~l~~~~ 108 (305)
+ ........+|.|+||+++.- +|-+||.+.|||.+|+...
T Consensus 78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 1 11112346899999997532 4558999999999999755
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3.2e-08 Score=90.26 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=96.7
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe-ccchhccCceEEEE
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF-NQSLAQQNRLTLDF 81 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v-~~~~~~~~~~~L~v 81 (305)
+.+.+.++|.+|++|+..+..+..|+|+.+.+.....+ ..+.+|++..+ +.|++|||+..... ..+...+ ..+.+
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~k-l~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~--K~~Rk 166 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGK-LNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHL--KVLRK 166 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhh-hhhhhHHhhcc-CcCcceeccceecccccchhhh--hhhhe
Confidence 56789999999999999999999999999998764333 34688888777 89999999876542 2333322 36778
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEee--c---CCCCCccEEEEEEEEeccCC
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVR--S---SSGKPKGELHFSYKFSEPTV 148 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~--~---~~g~~~G~l~lsl~~~~~~~ 148 (305)
.|+|++.+ .++++|+.+|.|..|.......++ .+....+- + ..-+.+|+|.+++.|.....
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~------~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFN------ICLEKSLPSERADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhh------hhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence 88888887 789999999999998653311111 11222222 1 12367899999999876543
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2e-06 Score=84.50 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=87.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT-IKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~-~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
.++.|+|+.|.||+... .+...|||+|.|.+... ..++++.|+...+ +..|.+||+|.|.+.++. .....+|.|.|
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEG-GPEHYELQFCV 1201 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCC-CCceEEEEEee
Confidence 46889999999999753 56778999999876433 2356777887554 899999999999997654 33458999999
Q ss_pred EecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeec
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRS 128 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~ 128 (305)
.|.... .|+.||.+.+.|+++...+ -...|++|-+
T Consensus 1202 KDYCFAReDRvvGl~VlqL~~va~kG----------S~a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVADKG----------SCACWVPLGR 1237 (1283)
T ss_pred hhheeecccceeeeeeeehhhHhhcC----------ceeEeeeccc
Confidence 998876 6889999999999998654 1467888865
No 124
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.23 E-value=2.7e-06 Score=82.90 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=76.2
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-
Q 021949 11 LISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL- 89 (305)
Q Consensus 11 vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~- 89 (305)
.++|+.|.++++++++|+|..+.-..++..+...++|.+.++ +++|.|. .|.+.+...+..+.+..+.|+|||.+..
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC
Confidence 466788999999999999999887655555578899999988 8999998 5666665554444457899999999988
Q ss_pred CCcceeEEEEeCccccc
Q 021949 90 GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 90 ~d~~IG~~~vpL~~l~~ 106 (305)
++++||++...+.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 66999999999999863
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=3.6e-06 Score=77.06 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=77.6
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
..-|.|++++|.+|...+..+-+||||.+++..+. ..+-++||.+.|+ +.+|+||+.|.|.+....+ ....+.|.|
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv-~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsv 307 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDV-GKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSV 307 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCc-chhhcccCcchhc-cCCccccccccccCCccch--hcceEEEee
Confidence 35589999999999998888999999999998543 3367899999887 8999999999999988776 336899999
Q ss_pred EecCCC-CCcceeEEEEe
Q 021949 84 KSDGLL-GDKTVGEVIVP 100 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vp 100 (305)
||.+.- ..+++|-+..-
T Consensus 308 gd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 308 GDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred cccCCCcCccCCCccccc
Confidence 999877 78888875543
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.96 E-value=3.2e-05 Score=78.55 Aligned_cols=116 Identities=21% Similarity=0.331 Sum_probs=84.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEecCCCCCCCeeece-EEEE-eccchhccCceEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVDRSGGSNPTWNFP-IKFT-FNQSLAQQNRLTLDF 81 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~k~~~~nP~Wne~-f~f~-v~~~~~~~~~~~L~v 81 (305)
.+|.|+||++.-|.+.. ...||.|.+-+-+.+. ++++||+++..++.||+|+|. |.|. |--..+ ..|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL----A~lRi 774 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL----ASLRI 774 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch----hheee
Confidence 57899999999887654 6699999988755533 378999999999999999865 7775 322222 58999
Q ss_pred EEEecCCCCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCc--cEEEEEEEEe
Q 021949 82 KIKSDGLLGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPK--GELHFSYKFS 144 (305)
Q Consensus 82 ~V~d~~~~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~--G~l~lsl~~~ 144 (305)
.|++++ .+|||+=.+||..|..+ .+.+.||..++.+- -.|.|.|.+.
T Consensus 775 avyeEg---gK~ig~RIlpvd~l~~G-------------Yrhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 775 AVYEEG---GKFIGQRILPVDGLNAG-------------YRHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred eeeccC---CceeeeeccchhcccCc-------------ceeEEecCCCCCccccceeEEEEEee
Confidence 999984 67999999999988742 33456776655543 3455555554
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.88 E-value=8.3e-06 Score=83.68 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=75.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..++|.|++|-+|...+..++.|||+++.++... ..-++.-+.+ ++||+|++-|++.+..... ..|+|+||
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~----~~d~~~yip~-tlnPVfgkmfel~~~lp~e----k~l~v~vy 683 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR----TLDRAHYIPN-TLNPVFGKMFELECLLPFE----KDLIVEVY 683 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccch----hhhhhhcCcC-CCCcHHHHHHHhhcccchh----hcceeEEE
Confidence 3467999999999999999999999999998732 3455566666 8999999988877644332 47899999
Q ss_pred ecCCC-CCcceeEEEEeCcccc
Q 021949 85 SDGLL-GDKTVGEVIVPIKELL 105 (305)
Q Consensus 85 d~~~~-~d~~IG~~~vpL~~l~ 105 (305)
|++.+ .|+.||+.+|+|+.-.
T Consensus 684 d~D~~~~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 684 DHDLEAQDEKIGETTIDLENRW 705 (1105)
T ss_pred Eeecccccchhhceehhhhhcc
Confidence 99998 7999999999988754
No 128
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.86 E-value=2.7e-05 Score=58.37 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=65.0
Q ss_pred EEEEEEecCCCCCCCCCC-CCcEEE--EEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 8 DLNLISAKHLKDVHLISK-MDVYAV--VSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 8 ~V~vvsA~dL~~~~~~gk-~dpYv~--v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
-|||+.|+||...+..+. ...|++ +.+.. ...+||.+. .+..||+|+|+|.|.+....+ .+..|.|.|+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k-----pv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~ 73 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK-----PVHFKSSAK-EGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQ 73 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCC-----Cccccchhh-cCCCChhHHHHHHHHHHHhhc--cceEEEEEee
Confidence 589999999987654332 334554 33332 256777764 458999999999999866544 4578999998
Q ss_pred ecCCCCCcceeEEEEeCccccc
Q 021949 85 SDGLLGDKTVGEVIVPIKELLD 106 (305)
Q Consensus 85 d~~~~~d~~IG~~~vpL~~l~~ 106 (305)
+ ..-+.+.||+|.+.|+++-.
T Consensus 74 ~-~~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 74 T-QTPRKRTIGECSLSLRTLST 94 (103)
T ss_pred c-cCCccceeeEEEeecccCCH
Confidence 8 23377899999999998764
No 129
>PLN02964 phosphatidylserine decarboxylase
Probab=97.83 E-value=3e-05 Score=78.27 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=66.4
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEE-EEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAV-VSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~-v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
+.+.|+|++|+ +.+ .|+|.+ ++++. +++||.+.++ +.||+||+.-.|.|..... ...+|.|
T Consensus 54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~------~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~----~~~~~~~ 115 (644)
T PLN02964 54 GIALLTLVGAE----MKF---KDKWLACVSFGE------QTFRTETSDS-TDKPVWNSEKKLLLEKNGP----HLARISV 115 (644)
T ss_pred CeEEEEeehhh----hcc---CCcEEEEEEecc------eeeeeccccc-cCCcccchhhceEeccCCc----ceEEEEE
Confidence 56778888886 221 365554 55543 8999999888 8999999999999877654 3569999
Q ss_pred EecCCC-CCcceeEEEEeCcccccc
Q 021949 84 KSDGLL-GDKTVGEVIVPIKELLDS 107 (305)
Q Consensus 84 ~d~~~~-~d~~IG~~~vpL~~l~~~ 107 (305)
||++.+ .+++++.|.++|.++..+
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred EecCCCCHHHhhhheeecHhhccHH
Confidence 999998 789999999988777654
No 130
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.75 E-value=0.00064 Score=56.72 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=91.6
Q ss_pred cceEEEEEEEecCCCCCCCC--CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhcc-------
Q 021949 4 YRALDLNLISAKHLKDVHLI--SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQ------- 74 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~--gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~------- 74 (305)
.+-|.|+|+.++-...--.. +..+..+.+.+.-. .++++|+.+.. +.+|.|+|.|.|++.......
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~----~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR----GQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec----CceEecCCccc-ccCCCCCCcEEEEecccccccccchhHh
Confidence 46689999988854321110 34555555555532 38999999887 799999999999997664111
Q ss_pred --CceEEEEEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCC---CccEEEEEEEEeccCC
Q 021949 75 --NRLTLDFKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGK---PKGELHFSYKFSEPTV 148 (305)
Q Consensus 75 --~~~~L~v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~---~~G~l~lsl~~~~~~~ 148 (305)
-...|+|.|...+.. ...++|+-.++-+.++... .+. .....+|...... +.|.|+|++.+.+...
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~----~~~----~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG----NGS----TSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccC----CCc----cceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 123577777776655 5589999999999998755 221 2455666654333 7899999999998764
No 131
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.66 E-value=0.0031 Score=51.58 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=79.6
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch----hccCceEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL----AQQNRLTL 79 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~----~~~~~~~L 79 (305)
...+.|+|.+..++...+ ...+|++.. ++.. ....+|.........-.|||+|.|.+.-.. .....-.|
T Consensus 6 kf~~~l~i~~l~~~p~~~----~~v~v~wkr-~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSSN----GKVFVKWKR-GDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred eEEEEEEEEEeECcCCCC----CEEEEEEEE-CCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 346788889988877521 233444433 3221 013455554444568999999988753221 11233567
Q ss_pred EEEEEecCCCCC-cceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEeccCC
Q 021949 80 DFKIKSDGLLGD-KTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSEPTV 148 (305)
Q Consensus 80 ~v~V~d~~~~~d-~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~~~~ 148 (305)
+|.|+.....+. ..||.+.|+|.++.... . +.....+.|... .+...+|+|+|.+.....
T Consensus 79 ~~~v~~~~~~~~k~~lG~~~inLaey~~~~----~----~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 79 KFSVFEVDGSGKKKVLGKVSINLAEYANED----E----EPITVRLLLKKC-KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEEEecCCCccceEEEEEEEHHHhhCcC----C----CcEEEEEeCccC-CCCCcEEEEEEEEEECcc
Confidence 888887743323 58999999999998632 1 124556666653 456788999999887654
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.40 E-value=0.0037 Score=52.55 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
.+.|+|+|++++++... ...+.||.+.+-.....-.....|+-+. ..++.|||-++|+|.-..+- +...|.|.|
T Consensus 7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti 80 (158)
T cd08398 7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSI 80 (158)
T ss_pred CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEE
Confidence 46789999999988643 2368888887764321001122333322 25799999999987544432 347899999
Q ss_pred EecCCC-----CCcceeEEEEeCccc
Q 021949 84 KSDGLL-----GDKTVGEVIVPIKEL 104 (305)
Q Consensus 84 ~d~~~~-----~d~~IG~~~vpL~~l 104 (305)
|+.... ....||.+.++|-+.
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEECC
Confidence 986532 124699999987774
No 133
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.34 E-value=0.002 Score=48.60 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccc
Q 021949 25 KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104 (305)
Q Consensus 25 k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l 104 (305)
..+..+++.+++ +.+..|.-... .+-.|+++|+|+++.+ .+|+|.||-+|. ..+.|...+.|++.
T Consensus 8 ~~eV~avLklDn-----~~VgqT~Wk~~--s~q~WDQ~Fti~LdRs------RELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 8 CSEVSAVLKLDN-----TVVGQTQWKPK--SNQAWDQSFTLELERS------RELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred ccceEEEEEEcC-----eEEeecccccc--ccccccceeEEEeecc------cEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 368899999987 46677765443 5889999999999765 489999987653 35788888888885
Q ss_pred ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
.... . . .-.+.|.|..+++|
T Consensus 73 ~~~~------------~--~-----~lepqg~l~~ev~f 92 (98)
T cd08687 73 RHEV------------Q--L-----DMEPQLCLVAELTF 92 (98)
T ss_pred cccc------------e--e-----ccccccEEEEEEEe
Confidence 4311 1 1 23467888888877
No 134
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00043 Score=64.66 Aligned_cols=113 Identities=22% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCccceEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEE
Q 021949 1 MASYRALDLNLISAKHLKDVHLI-SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTL 79 (305)
Q Consensus 1 m~~~~~L~V~vvsA~dL~~~~~~-gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L 79 (305)
|...+.|+|.|++|++|....-. ...++||+|++...... ..+.+|+..++ +..|.+-..+.|.-.... ..|
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c-~ak~ktk~A~k-T~~plyqq~l~f~~sp~~-----k~L 337 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFC-IAKKKTKSARK-TLDPLYQQQLSFDQSPPG-----KYL 337 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCce-ecccccccccc-cCchhhhhhhhhccCCCc-----cEE
Confidence 45678999999999999754322 35789999998754332 35778888777 677766666677654433 589
Q ss_pred EEEEEec-CCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecC
Q 021949 80 DFKIKSD-GLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSS 129 (305)
Q Consensus 80 ~v~V~d~-~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~ 129 (305)
.+.||.. ..+ .+.|+|.+.|-|.||.... .+-..||+|.-.
T Consensus 338 q~tv~gdygRmd~k~fmg~aqi~l~eL~ls~---------~~~igwyKlfgs 380 (405)
T KOG2060|consen 338 QGTVWGDYGRMDHKSFMGVAQIMLDELNLSS---------SPVIGWYKLFGS 380 (405)
T ss_pred EEEEeccccccchHHHhhHHHHHhhhhcccc---------ccceeeeeccCC
Confidence 9999964 344 6779999999999986432 134778988864
No 135
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.17 E-value=0.0083 Score=56.49 Aligned_cols=125 Identities=14% Similarity=0.242 Sum_probs=93.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchh---ccCceEEEEEE
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLA---QQNRLTLDFKI 83 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~---~~~~~~L~v~V 83 (305)
+.|.|+++++..... +....+..++++ ....|..+.. +.+|.||.++.++++...+ ...+..|+|++
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng------~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c 71 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG------ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQC 71 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC------ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEE
Confidence 678999999887652 355677788877 5777877666 7899999999999876543 23457899999
Q ss_pred EecCCC--CCcceeEEEEeCccc---ccccCCCCCCCCCcceEEEEEeecCCCC---CccEEEEEEEEeccCCC
Q 021949 84 KSDGLL--GDKTVGEVIVPIKEL---LDSSSSSSSGDAKSMKFVTYQVRSSSGK---PKGELHFSYKFSEPTVG 149 (305)
Q Consensus 84 ~d~~~~--~d~~IG~~~vpL~~l---~~~~~~~~~~~g~~~~~~~~~l~~~~g~---~~G~l~lsl~~~~~~~~ 149 (305)
|..+.. ..+.||.+.++|+.+ ..+. ......||+|...+.+ .+-+|.|++.+..+...
T Consensus 72 ~a~~~~~~~re~iGyv~LdLRsa~~~~~~~--------~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~ 137 (340)
T PF12416_consen 72 FAVDGSTGKRESIGYVVLDLRSAVVPQEKN--------QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP 137 (340)
T ss_pred EEecCCCCcceeccEEEEEccccccccccc--------cccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence 988733 677899999999998 3221 1246789999875222 46789999999887653
No 136
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.06 E-value=0.0044 Score=62.82 Aligned_cols=15 Identities=13% Similarity=0.722 Sum_probs=7.7
Q ss_pred CCCCeeeceEEEEec
Q 021949 54 GSNPTWNFPIKFTFN 68 (305)
Q Consensus 54 ~~nP~Wne~f~f~v~ 68 (305)
+.+|.|.-.|+|+|+
T Consensus 441 ~~DPdf~yr~~l~id 455 (1102)
T KOG1924|consen 441 GMDPDFKYRFRLDID 455 (1102)
T ss_pred CCCCCcchhhcccCc
Confidence 455555555555443
No 137
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.05 E-value=0.0037 Score=53.39 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=51.6
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
...++|+|+++.+|... ....+.||.+.|-.....-.....|+...- ..++.|||.++|+|.-..+- +...|.|.|
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLP-r~ArLciti 82 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLP-RMARLCFAI 82 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCC-hhHeEEEEE
Confidence 45789999999988741 234678888776542211012334544332 46799999999987544332 347899999
Q ss_pred EecC
Q 021949 84 KSDG 87 (305)
Q Consensus 84 ~d~~ 87 (305)
|+..
T Consensus 83 ~~~~ 86 (173)
T cd08693 83 YEVS 86 (173)
T ss_pred EEec
Confidence 9854
No 138
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.98 E-value=0.0045 Score=51.72 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=62.4
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..++|+|....++.. +.....+.||.+.+-...........|..... ..++.|||.++|++.-..+- +...|.|.||
T Consensus 8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP-~~arL~itl~ 84 (156)
T cd08380 8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLP-REARLCLSIY 84 (156)
T ss_pred CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCC-hhheEEEEEE
Confidence 467888888777654 11234678888876543211122334444332 36899999999986544332 3478999999
Q ss_pred ecCCC---CCcceeEEEEeCccc
Q 021949 85 SDGLL---GDKTVGEVIVPIKEL 104 (305)
Q Consensus 85 d~~~~---~d~~IG~~~vpL~~l 104 (305)
+.+.. .+..||++.++|-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 86544 246899999987764
No 139
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.93 E-value=0.0057 Score=48.00 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=55.8
Q ss_pred EEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhc---cCceEEEEEEEecCCCCCcceeEEEEeCcccc
Q 021949 29 YAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQ---QNRLTLDFKIKSDGLLGDKTVGEVIVPIKELL 105 (305)
Q Consensus 29 Yv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~---~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~ 105 (305)
||.+.+-. -..+.|.+++ +.+|.+|.+..|.|..+..- .....|.|+++.......+.||.++|+|.+++
T Consensus 2 Fct~dFyd-----fEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYD-----FETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT--------EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHH
T ss_pred EEEEEeec-----eeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhh
Confidence 45555443 3678898887 58999999988887655421 12357899998866445678999999999999
Q ss_pred cccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEe
Q 021949 106 DSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFS 144 (305)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~ 144 (305)
.+. + . ....+..+...+++.-|+|++.+++.
T Consensus 75 ~~~-----~--~-~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESN-----G--E-RIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp H-------S-----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred cCC-----C--c-eEEEEEEEeccCCCeEEEEEEEEEec
Confidence 543 1 1 13556677777788999999999875
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.62 E-value=0.028 Score=48.19 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=48.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIK 84 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~ 84 (305)
..++|+|++.. +.+.+.......||.+.|-.... .....+|....- +.++.|||-++|+|.-..+- +...|.|.||
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~-~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQ-VLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP-KGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCe-ecccceeeccCC-CCCccccccEECccccccCC-hhhEEEEEEE
Confidence 56888988886 33333233455777776554211 112334554444 56799999998887554443 3478999999
Q ss_pred ecC
Q 021949 85 SDG 87 (305)
Q Consensus 85 d~~ 87 (305)
+..
T Consensus 86 ~~~ 88 (178)
T cd08399 86 CGK 88 (178)
T ss_pred EEe
Confidence 863
No 141
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.56 E-value=0.00066 Score=70.15 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=81.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEecc-----chhccCceEEEE
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQ-----SLAQQNRLTLDF 81 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~-----~~~~~~~~~L~v 81 (305)
+++.|..|+.|-..+..+.+|+|+.+.+.+ +.++|.++.. ++||+||.++.|.--+ .....+--.+.|
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~------qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG------QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc------ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 344456677777777778899999999887 6788988877 9999999998885211 111222246789
Q ss_pred EEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEE
Q 021949 82 KIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKF 143 (305)
Q Consensus 82 ~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~ 143 (305)
+|+|.+.. .++|+|+......-... . ....|+++.+ ++...|.+.++..+
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~----------p~lkw~p~~r-g~~l~gd~l~a~el 331 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-C----------PALKWVPTMR-GAFLDGDVLIAAEL 331 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-C----------CccceEEeec-ccccccchhHHHHH
Confidence 99998766 78999987776555442 1 1366777764 34556666655543
No 142
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.49 E-value=0.052 Score=46.63 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=51.0
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC---------------CCceEEeEecCCCCCCCeeeceEEEEec
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTI---------------KKQKVKSHVDRSGGSNPTWNFPIKFTFN 68 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~---------------~~~~~kT~v~k~~~~nP~Wne~f~f~v~ 68 (305)
...|-|++.+++-=+. ......+..|+|++..++.. ......|.|... +.+|.|+|+|++.|+
T Consensus 6 rN~LYv~~~s~~f~k~-~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh-~k~P~f~deiKi~LP 83 (184)
T PF14429_consen 6 RNDLYVYPKSGNFSKS-KKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYH-NKNPQFNDEIKIQLP 83 (184)
T ss_dssp -EEEEEEEEEEE-SSS-SSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT--SS-EEEEEEEEEE-
T ss_pred eeeEEEEeCEEEECCC-CCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEec-CCCCCccEEEEEEcC
Confidence 4567777777642111 11223456666666533211 134566666655 689999999999997
Q ss_pred cchhccCceEEEEEEEecCCC--C--CcceeEEEEeCcc
Q 021949 69 QSLAQQNRLTLDFKIKSDGLL--G--DKTVGEVIVPIKE 103 (305)
Q Consensus 69 ~~~~~~~~~~L~v~V~d~~~~--~--d~~IG~~~vpL~~ 103 (305)
.... .+..|.|++++...- . +..+|.+.++|-+
T Consensus 84 ~~l~--~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 84 PDLF--PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp CCCC--TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred chhc--ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 7643 336888998886543 2 2689999999988
No 143
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.44 E-value=0.012 Score=50.02 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecC---CCCCCCeeeceEEEEeccchhccCceEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDR---SGGSNPTWNFPIKFTFNQSLAQQNRLTLDF 81 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k---~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v 81 (305)
..+.|+|.++.++.........|.||.+.|-.....-.....|+... .-..+..|||.++|++.-..+ .+...|.|
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~i 86 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLVL 86 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEEE
Confidence 46889999999887654333578899988764321111222333211 112357799999998754443 34578999
Q ss_pred EEEecCCCC----------CcceeEEEEeCcc
Q 021949 82 KIKSDGLLG----------DKTVGEVIVPIKE 103 (305)
Q Consensus 82 ~V~d~~~~~----------d~~IG~~~vpL~~ 103 (305)
.||+..... +..||.+.++|-+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999865432 3466666666544
No 144
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.43 E-value=0.016 Score=58.95 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.3
Q ss_pred EEeCcccc
Q 021949 98 IVPIKELL 105 (305)
Q Consensus 98 ~vpL~~l~ 105 (305)
.|++.+|+
T Consensus 453 ~id~~~li 460 (1102)
T KOG1924|consen 453 DIDLTELI 460 (1102)
T ss_pred cCcHHHHH
Confidence 34444443
No 145
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.42 E-value=0.049 Score=47.21 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=43.4
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC--CC---cceeEEEEeCc
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL--GD---KTVGEVIVPIK 102 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~--~d---~~IG~~~vpL~ 102 (305)
....+|.|... ..+|.|+|++++.|+.... ....|.|++++.... +| +.+|-+.++|-
T Consensus 52 ~se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46788888655 5799999999999977654 336788888876433 23 57999999875
No 146
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.40 E-value=0.051 Score=46.91 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=44.0
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC--C-CcceeEEEEeCcc
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL--G-DKTVGEVIVPIKE 103 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~--~-d~~IG~~~vpL~~ 103 (305)
...++|.|... +.+|.|+|++++.|+..... ...|.|++++.... . .+.+|-+.++|-+
T Consensus 52 ~se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~--~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYH-NNSPRWNETIKLPIPIDKFR--GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEc-CCCCCCceeEEEecChhhCC--CeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 35788888776 68999999999999876543 36788888775433 2 3679999998743
No 147
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.25 E-value=0.015 Score=48.93 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=52.5
Q ss_pred CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-CCcceeEEEEeCc
Q 021949 24 SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIK 102 (305)
Q Consensus 24 gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~ 102 (305)
...+.||.+.+-...........|....- +....|||-++|+|.-..+- ++..|.|.||+.... ....||.++++|-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 35788999887653211112334444333 46788999999987655443 347899999997654 4568999999866
Q ss_pred cc
Q 021949 103 EL 104 (305)
Q Consensus 103 ~l 104 (305)
+.
T Consensus 106 d~ 107 (159)
T cd08397 106 NK 107 (159)
T ss_pred CC
Confidence 63
No 148
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.20 E-value=0.012 Score=54.11 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=74.5
Q ss_pred ccceEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEE
Q 021949 3 SYRALDLNLISAKHLKDVHL--ISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLD 80 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~--~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~ 80 (305)
..+.|.|.++..++|+-... .-..+-||++..+. ..+.||.|.. ++..=.|.|+|+++|-.. ..|+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-----qh~aRt~vrs-~~~~f~w~e~F~~Dvv~~------~vl~ 116 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-----QHPARTRVRS-SGPGFAWAEDFKHDVVNI------EVLH 116 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecc-----cCcccccccc-CCCCccchhhceeecccc------eeee
Confidence 46788999999999975432 23467899999875 2466676643 367778999999988654 3789
Q ss_pred EEEEecCCC-CCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949 81 FKIKSDGLL-GDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE 145 (305)
Q Consensus 81 v~V~d~~~~-~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~ 145 (305)
+.||.|..- +++++=.-.+.+..+.... .+ +...+. -+++|.+.|.+.+.+
T Consensus 117 ~lvySW~pq~RHKLC~~g~l~~~~v~rqs-----pd----~~~Al~-----lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 117 YLVYSWPPQRRHKLCHLGLLEAFVVDRQS-----PD----RVVALY-----LEPRGQPPLRLPLAD 168 (442)
T ss_pred EEEeecCchhhccccccchhhhhhhhhcC-----Cc----ceeeee-----cccCCCCceecccCC
Confidence 999999766 6665433334444443222 11 122222 245677777766654
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.57 E-value=0.058 Score=44.30 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=47.0
Q ss_pred CcEEEEEEecCCCCCC-ceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-CC----cceeEEEEe
Q 021949 27 DVYAVVSISGDHTIKK-QKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-GD----KTVGEVIVP 100 (305)
Q Consensus 27 dpYv~v~l~~~~~~~~-~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-~d----~~IG~~~vp 100 (305)
+.||.+.|-.....-. ....|........++.|||.++|+|.-..+- +...|.|.||..+.. .+ ..||++.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 3566666653221111 1235554443126999999999987554443 347899999987655 33 689999998
Q ss_pred Cccc
Q 021949 101 IKEL 104 (305)
Q Consensus 101 L~~l 104 (305)
|-+.
T Consensus 82 lFd~ 85 (142)
T PF00792_consen 82 LFDY 85 (142)
T ss_dssp SB-T
T ss_pred eECC
Confidence 7775
No 150
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.69 E-value=0.18 Score=38.84 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=46.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEec
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSD 86 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~ 86 (305)
+.+++...+++.........+.||.+.+-...........|..+. ...++.|||-++|++.-..+- +...|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLP-REARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCC-hhhEEEEEEEEe
Confidence 566677766665433222247899987764321111123444333 245689999999886544432 347899999985
Q ss_pred C
Q 021949 87 G 87 (305)
Q Consensus 87 ~ 87 (305)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 3
No 151
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.19 E-value=0.21 Score=42.33 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=54.9
Q ss_pred CCCCcEEEEEEecCCCCCCceEEeEecCC-CCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCc
Q 021949 24 SKMDVYAVVSISGDHTIKKQKVKSHVDRS-GGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIK 102 (305)
Q Consensus 24 gk~dpYv~v~l~~~~~~~~~~~kT~v~k~-~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~ 102 (305)
.+..-|++|.+.+ +.+.+|+...- ....-.+||.|.+.|..-. ..|.|+||......+++|+++.|+|-
T Consensus 35 ~~~~~~ikl~~N~-----k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~~~~~~~~la~v~vpvP 104 (168)
T PF15625_consen 35 QKTRYYIKLFFND-----KEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEKSGLSDRLLAEVFVPVP 104 (168)
T ss_pred hheeEEEEEEECC-----EEEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEccCccceEEEEEEeeCC
Confidence 3467899999886 46677765433 2445667888998886543 48999999988888999999999987
Q ss_pred cccc
Q 021949 103 ELLD 106 (305)
Q Consensus 103 ~l~~ 106 (305)
....
T Consensus 105 ~~~~ 108 (168)
T PF15625_consen 105 GSTV 108 (168)
T ss_pred CCcc
Confidence 7654
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.10 E-value=0.85 Score=38.89 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred eEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC------CCcceeEEEEeCcc
Q 021949 47 SHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL------GDKTVGEVIVPIKE 103 (305)
Q Consensus 47 T~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~------~d~~IG~~~vpL~~ 103 (305)
|.++..+ .+|.|+|+|++.|+.... ....|.|++++.... ....+|-+.++|-+
T Consensus 56 ~sv~~~~-k~p~f~deiKi~LP~~l~--~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYH-KNPVFNDEIKIQLPADLT--PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcC-CCCCCceeEEEecCCccC--CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344442 799999999999965532 236888999886532 35689999999877
No 153
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=93.60 E-value=0.2 Score=49.54 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=45.2
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCC----C-CCcceeEEEEeCcccccc
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGL----L-GDKTVGEVIVPIKELLDS 107 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~----~-~d~~IG~~~vpL~~l~~~ 107 (305)
....+|.++++ .+||.|.++|.+....+.. ..|.|++++.+. + ..+|+|++...|.++...
T Consensus 40 ~e~~rte~i~~-~~~p~f~~~~~l~y~fE~v----Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 40 EEVGRTEVIRN-VLNPFFTKKFLLQYRFEKV----QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccccceeeeec-cCCccceeeechhheeeee----eeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 34568999988 7999999988776544433 367788877543 2 578999999999998753
No 154
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=90.87 E-value=0.68 Score=41.71 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHhhhhc
Q 021949 268 GTGLLGGMLGGLLIGDIVS 286 (305)
Q Consensus 268 ~~g~~~g~~~g~~~~~~~~ 286 (305)
++..++|+.||+||+++|+
T Consensus 141 A~~TAAGVAGG~lL~n~i~ 159 (247)
T PF09849_consen 141 AAQTAAGVAGGMLLANGIE 159 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555666555544
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.87 E-value=3.5 Score=35.53 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=43.1
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC----------CCcceeEEEEeCcc
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL----------GDKTVGEVIVPIKE 103 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~----------~d~~IG~~~vpL~~ 103 (305)
.....|.|.-. +.+|.|+|++++.|+.... ....|.|+.++.... .+..+|-+.+||-+
T Consensus 55 ~~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~--~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHH-NQNPEFYDEIKIELPTQLH--EKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEc-CCCCccceeEEEecCCcCC--CCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45677778766 5899999999999876643 235788888875421 13569999999865
No 156
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=90.84 E-value=0.78 Score=39.34 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=42.6
Q ss_pred CceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC-------CCcceeEEEEeCcc
Q 021949 42 KQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-------GDKTVGEVIVPIKE 103 (305)
Q Consensus 42 ~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-------~d~~IG~~~vpL~~ 103 (305)
.....|.|.-. +.+|.|+|+|++.|+.... ....|.|++++.+.. .++.+|-+.+||-+
T Consensus 53 ~~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~--~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 53 LTEAYTAVTYH-NKSPDFYDEIKIKLPADLT--DNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred ceeEEEEEEEe-CCCCcccceEEEEcCCCCC--CCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45677777766 6899999999999976543 235788888874332 13569988888754
No 157
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=90.64 E-value=2.2 Score=35.00 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=64.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccch--------hccCce
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSL--------AQQNRL 77 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~--------~~~~~~ 77 (305)
.|+|+-+.|-+.-.. .+-|.|+.|++.+ +.++|+.... ..--.++|+|+|+-.-.. ......
T Consensus 3 eL~i~aVTCPGv~L~---~~~~vyL~v~~lg------~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e 72 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLC---DKGDVYLSVCILG------QYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDE 72 (140)
T ss_pred EEEEEEEecCCeEeC---CCCCEEEEEEEcc------cEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcC
Confidence 467777777665433 4679999999988 6888887665 344456899998631111 112345
Q ss_pred EEEEEEEecCCCCCcceeEEEEeCccccc
Q 021949 78 TLDFKIKSDGLLGDKTVGEVIVPIKELLD 106 (305)
Q Consensus 78 ~L~v~V~d~~~~~d~~IG~~~vpL~~l~~ 106 (305)
.+.||++.+..-..+.|+...-.++|++-
T Consensus 73 ~~~iELiQl~~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 73 TVYIELIQLVPPAGEILAYYEENTRDFLF 101 (140)
T ss_pred cEEEEEEEEeCCCCcEEEEEeccccceEc
Confidence 78899988766557789999999999875
No 158
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=89.89 E-value=2 Score=43.28 Aligned_cols=80 Identities=23% Similarity=0.422 Sum_probs=56.8
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEe
Q 021949 6 ALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKS 85 (305)
Q Consensus 6 ~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d 85 (305)
.++|.|++..+|+.+..+ .=+||++.+.+ .+..|.-.. ...|.|...=.|...... ..++|.+|.
T Consensus 342 smevvvmevqglksvapn--rivyctmeveg------eklqtdqae--askp~wgtqgdfstthpl-----pvvkvklft 406 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN--RIVYCTMEVEG------EKLQTDQAE--ASKPKWGTQGDFSTTHPL-----PVVKVKLFT 406 (1218)
T ss_pred eeeEEEeeeccccccCCC--eeEEEEEEecc------cccccchhh--hcCCCCCcCCCcccCCCC-----ceeEEEEEe
Confidence 478889999999876522 23799999887 355565433 468999977677655443 467888887
Q ss_pred cCCC----CCcceeEEEEe
Q 021949 86 DGLL----GDKTVGEVIVP 100 (305)
Q Consensus 86 ~~~~----~d~~IG~~~vp 100 (305)
+... .|+.+|++.+-
T Consensus 407 estgvlaledkelgrvil~ 425 (1218)
T KOG3543|consen 407 ESTGVLALEDKELGRVILQ 425 (1218)
T ss_pred ecceeEEeechhhCeEEEe
Confidence 7532 78899998774
No 159
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=89.66 E-value=7.1 Score=37.67 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCCcEEEEEEecCCCCCCceEEeEecCCCCCCC-ee-eceEEEEeccchhcc---------CceEEEEEEEecCC-----
Q 021949 25 KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNP-TW-NFPIKFTFNQSLAQQ---------NRLTLDFKIKSDGL----- 88 (305)
Q Consensus 25 k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP-~W-ne~f~f~v~~~~~~~---------~~~~L~v~V~d~~~----- 88 (305)
...+||+|+|.+-+. ++..-..+...+.++ .- +-.-.|.|++..++. ....|+|.||.-+.
T Consensus 35 sspCfC~IrL~~fP~---Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCG 111 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPS---QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCG 111 (460)
T ss_pred CCCeEEEEecCCCCc---cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccc
Confidence 357899999987542 222222222212221 11 222456665544321 12579999998543
Q ss_pred --CCCcceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCC----CCccEEEEEEEEeccC
Q 021949 89 --LGDKTVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSG----KPKGELHFSYKFSEPT 147 (305)
Q Consensus 89 --~~d~~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g----~~~G~l~lsl~~~~~~ 147 (305)
...++||.++|+|.--.. . +....+..-|+.+-+... +...+|||.++.++..
T Consensus 112 v~~~~klLG~v~vpldl~~a-e-----~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 112 VGNSGKLLGKVRVPLDLKWA-E-----GKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred ccccceEEEEEEEEeccccc-c-----CCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 256899999999873222 1 121123345666665321 2467899999987754
No 160
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=88.06 E-value=1.7 Score=36.02 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-CceEEeEecCCC-CCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIK-KQKVKSHVDRSG-GSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~-~~~~kT~v~k~~-~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
..|.|+|.+.. |++.. .-.|||+.|++....... ...+.|.+.... +..-.||...++...-+.+.. ...|.||
T Consensus 13 t~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-Gaai~fE 88 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK-GAAIFFE 88 (147)
T ss_dssp -EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T-T-EEEEE
T ss_pred ceEEEEEEEEE-ECChH--HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC-ceEEEEE
Confidence 34677776655 76654 336899999987544322 245667765221 233445655555443333333 4678899
Q ss_pred EEecCCC--CCcceeEEEEeCccccc
Q 021949 83 IKSDGLL--GDKTVGEVIVPIKELLD 106 (305)
Q Consensus 83 V~d~~~~--~d~~IG~~~vpL~~l~~ 106 (305)
++|+... +-...+++.+.++++..
T Consensus 89 ~kH~K~kk~k~S~kcw~fme~dei~~ 114 (147)
T PF14186_consen 89 FKHYKPKKKKTSTKCWAFMELDEIKP 114 (147)
T ss_dssp EEEEETTTTCEEEEEEEEEEGGG--S
T ss_pred EEeeeccceeeeeeEEEEEEhhhccC
Confidence 9987655 33457899999988874
No 161
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=87.80 E-value=6.1 Score=37.25 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCCCCCceEEeEecCCCCCCC-eeeceEEEEeccchhccCceEEEEEEEecCCCCCcceeEEEEeCccc
Q 021949 26 MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNP-TWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLGDKTVGEVIVPIKEL 104 (305)
Q Consensus 26 ~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP-~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l 104 (305)
-..|++++.+. ...+|..+..+-.+- .-.+...+.+... +.+|+|.||.....+..-||.+.+.+++-
T Consensus 74 khiyIef~~Gr------~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-----DnTLkI~lfKKkLvkk~hIgdI~InIn~d 142 (508)
T PTZ00447 74 KHIYIIFSTDK------YDFTTDEIPTNKKNRIHIDQRVDIKIRQC-----DETLRVDLFTTKLTKKVHIGQIKIDINAS 142 (508)
T ss_pred eeEEEEEEcCc------eEEEccccccCcCceEEEeeeeeeeeeec-----CceEEEEEEeccccceeEEEEEEecccHH
Confidence 45678887765 566664443321111 2234444444332 25899999998877888999999998764
Q ss_pred ccccCCCCCCCCCcceEEEEEeecCCCCCccEEEEEEEEec
Q 021949 105 LDSSSSSSSGDAKSMKFVTYQVRSSSGKPKGELHFSYKFSE 145 (305)
Q Consensus 105 ~~~~~~~~~~~g~~~~~~~~~l~~~~g~~~G~l~lsl~~~~ 145 (305)
+-.. . -....||-++ ++|...+.|.||+-=..
T Consensus 143 IIdk----~----FPKnkWy~c~-kDGq~~cRIqLSFhKL~ 174 (508)
T PTZ00447 143 VISK----S----FPKNEWFVCF-KDGQEICKVQMSFYKIQ 174 (508)
T ss_pred HHhc----c----CCccceEEEe-cCCceeeeEEEEehhhh
Confidence 3222 1 1357799885 57888888888875433
No 162
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=87.65 E-value=0.83 Score=47.72 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=55.3
Q ss_pred CCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCCC-CcceeEEEEeCccc
Q 021949 26 MDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLLG-DKTVGEVIVPIKEL 104 (305)
Q Consensus 26 ~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~~-d~~IG~~~vpL~~l 104 (305)
++.|+.+.+.. ....+|....+.-.+|.|++.|.+.+.... ..+++.+.+.+..+ .+++|.+.+++..+
T Consensus 138 ~e~Ylt~~l~~-----~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~~~~G~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 138 LENYLTVVLHK-----ARYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGARVPGWSKRWGRVKISFLQY 207 (887)
T ss_pred ccchheeeech-----hhhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCCccccceeEEEEeccchhhh
Confidence 47888888876 355667666653478999988877665544 47888988888776 88999999999999
Q ss_pred ccc
Q 021949 105 LDS 107 (305)
Q Consensus 105 ~~~ 107 (305)
..+
T Consensus 208 ~~~ 210 (887)
T KOG1329|consen 208 CSG 210 (887)
T ss_pred hcc
Confidence 863
No 163
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=86.31 E-value=0.63 Score=36.64 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=50.5
Q ss_pred eEEEEeccchhc--cCceEEEEEEEecCC---C-CCcceeEEEEeCcccccccCCCC-----CCCCCcceEEEEEeecCC
Q 021949 62 PIKFTFNQSLAQ--QNRLTLDFKIKSDGL---L-GDKTVGEVIVPIKELLDSSSSSS-----SGDAKSMKFVTYQVRSSS 130 (305)
Q Consensus 62 ~f~f~v~~~~~~--~~~~~L~v~V~d~~~---~-~d~~IG~~~vpL~~l~~~~~~~~-----~~~g~~~~~~~~~l~~~~ 130 (305)
+.-|.++...+. ..+..|++.+++... . ...+||.+.|+|.++..+-.... .... ......|.|++..
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s-~~~k~~f~L~~~~ 90 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSS-KTIKGTFPLFDEN 90 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCc-hhhcceeEeecCC
Confidence 455555544432 123456776665432 2 55789999999998763210000 0000 1234578999988
Q ss_pred CCCccEEEEEEEEec
Q 021949 131 GKPKGELHFSYKFSE 145 (305)
Q Consensus 131 g~~~G~l~lsl~~~~ 145 (305)
++..|+|.|.+++.-
T Consensus 91 ~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 91 GNPVGEISLYIRLSC 105 (112)
T ss_pred CceeeeEEEEEEEec
Confidence 889999999999864
No 164
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=80.93 E-value=5.2 Score=34.31 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=15.9
Q ss_pred CcchhhhHHHHHHHHHHhhhhc
Q 021949 265 LGFGTGLLGGMLGGLLIGDIVS 286 (305)
Q Consensus 265 ~g~~~g~~~g~~~g~~~~~~~~ 286 (305)
...++|+++|+++|-+|+.+|+
T Consensus 91 ~aAgagAv~g~~~GY~lG~~m~ 112 (217)
T smart00157 91 GAAAAGAVVGGLGGYMLGSAMS 112 (217)
T ss_pred HhhhcchhhhhccccccccccC
Confidence 3456677778888888888765
No 165
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=78.44 E-value=39 Score=28.37 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=53.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC----CCCc-eEEeEecCCC----CCCCeeeceEEEEeccchhccCce
Q 021949 7 LDLNLISAKHLKDVHLISKMDVYAVVSISGDHT----IKKQ-KVKSHVDRSG----GSNPTWNFPIKFTFNQSLAQQNRL 77 (305)
Q Consensus 7 L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~----~~~~-~~kT~v~k~~----~~nP~Wne~f~f~v~~~~~~~~~~ 77 (305)
+.-.|.+|++.. ..+.||+..+.-... .-.. .-.|.+.+.. +..-.||..|++.+...... .--
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~-gwP 76 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQ-GWP 76 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCC-CCc
Confidence 344678887654 346788877653211 0022 4566665432 35688999888877554332 125
Q ss_pred EEEEEEEecCCC-CCcceeEEEEe
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIVP 100 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~vp 100 (305)
.|.|+||..|.. ++++.|-..+.
T Consensus 77 ~L~l~V~~~D~~gr~~~~GYG~~~ 100 (168)
T PF07162_consen 77 QLVLQVYSLDSWGRDRVEGYGFCH 100 (168)
T ss_pred eEEEEEEEEcccCCeEEeEEeEEE
Confidence 899999999888 67777754443
No 166
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=69.82 E-value=12 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhhhhc
Q 021949 271 LLGGMLGGLLIGDIVS 286 (305)
Q Consensus 271 ~~~g~~~g~~~~~~~~ 286 (305)
.+.|+|++|+...+++
T Consensus 19 ~l~gClaaLcCCc~ld 34 (37)
T PF12734_consen 19 CLAGCLAALCCCCLLD 34 (37)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7778888888776654
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=69.58 E-value=79 Score=29.97 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=56.4
Q ss_pred cceEEEEEEEecCCCCCC---CC---CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeee--ceEEEEeccchhc--
Q 021949 4 YRALDLNLISAKHLKDVH---LI---SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWN--FPIKFTFNQSLAQ-- 73 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~---~~---gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wn--e~f~f~v~~~~~~-- 73 (305)
.-.|.|+|..|++|...- +- +....|...+|-+ ....|..-+. ..+|.+. +...|.|..+...
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG------n~Vt~~~F~~-l~~~~f~~er~s~vRirSS~~~L~ 263 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG------NDVTTEPFKS-LSSPSFPPERASGVRIRSSLRVLR 263 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC------cEeEeeeccc-cCCCCcCeeeeeEEeecccHHHHH
Confidence 356888999999886541 11 2245677777766 2334444344 5667663 3333555433211
Q ss_pred ---cCceEEEEEEEecCCCCCcceeEEEEeCccccccc
Q 021949 74 ---QNRLTLDFKIKSDGLLGDKTVGEVIVPIKELLDSS 108 (305)
Q Consensus 74 ---~~~~~L~v~V~d~~~~~d~~IG~~~vpL~~l~~~~ 108 (305)
.....|.|.+++ ++..||.+.|+|..++...
T Consensus 264 ~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 264 RYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred HHHhhCCCeEEEEee----CCcEEEEEEEEhhhccCCC
Confidence 112456677666 4678999999999998654
No 168
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=68.72 E-value=1.9 Score=45.04 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=49.9
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEE
Q 021949 4 YRALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 4 ~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
++.+.+.+.+|..|+.. .+.||...++.-. ....+.+|+++++ +..|.||++|+++|-... .+.|+.
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~-~~~s~~st~~iad-T~~~~~npe~hv~~~~sq------S~r~~~ 824 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFG-YFVSKASTRVIAD-TAEPQWNPEKHVPVIESQ------SSRLEK 824 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhc-cccccccceeeec-ccCCCCChhcccchhhcc------ccchhh
Confidence 56788888999888753 4677776654222 1247889999998 899999999998885542 344555
Q ss_pred EecC
Q 021949 84 KSDG 87 (305)
Q Consensus 84 ~d~~ 87 (305)
++++
T Consensus 825 ~ek~ 828 (1112)
T KOG4269|consen 825 TEKS 828 (1112)
T ss_pred hccc
Confidence 5543
No 169
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.54 E-value=7.1 Score=35.76 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=4.8
Q ss_pred chhhhHHHHHHH
Q 021949 267 FGTGLLGGMLGG 278 (305)
Q Consensus 267 ~~~g~~~g~~~g 278 (305)
+++||++||++|
T Consensus 32 ~~g~l~ggl~~g 43 (281)
T COG4395 32 MLGGLAGGLLMG 43 (281)
T ss_pred hhhHHHHHHHHh
Confidence 333444444433
No 170
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.58 E-value=2.8 Score=42.76 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=35.6
Q ss_pred CCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEEEEecCCC
Q 021949 25 KMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL 89 (305)
Q Consensus 25 k~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~ 89 (305)
..++|+.|.+.-. +...+.+.+. +..|.|+++|.++|... ..+.|.|+++...
T Consensus 27 al~~y~~v~vk~~-----~~~~~~~~~~-~~~~~~~~~F~~~v~~~------~~~~i~v~~~~~~ 79 (694)
T KOG0694|consen 27 ALQPYLAVELKVK-----QGAENMTKVE-LRIPELRETFHVEVVAG------GAKNIIVLLKSPD 79 (694)
T ss_pred hhhhhheecccee-----ecccccCCCC-CCCchhhhheeeeeecC------CceEEEEEecCCc
Confidence 3678888887642 2222333333 78999999999997654 3678888887543
No 171
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=56.74 E-value=2.9 Score=42.32 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=29.1
Q ss_pred CCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEe
Q 021949 24 SKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTF 67 (305)
Q Consensus 24 gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v 67 (305)
-+++++++++++. +.++|+..+. +.+|+|||. .|++
T Consensus 303 f~~~~~~itsf~~------~~frt~~~~~-~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 303 FKDKWLAITSFGE------QTFRTEISDD-TEKPIYNED-ERED 338 (975)
T ss_pred cCCCchheeecch------hhhhhhhhcc-ccccccccc-cccc
Confidence 3578999999875 6889998887 799999997 4444
No 172
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=56.33 E-value=42 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.3
Q ss_pred chhhhHHHHHHHHHHhhhhcccc
Q 021949 267 FGTGLLGGMLGGLLIGDIVSDAA 289 (305)
Q Consensus 267 ~~~g~~~g~~~g~~~~~~~~~~~ 289 (305)
+...+++|+++|++++-++..+.
T Consensus 89 ~~~aAgagAv~g~~~GY~lG~~m 111 (217)
T smart00157 89 VAGAAAAGAVVGGLGGYMLGSAM 111 (217)
T ss_pred HHHhhhcchhhhhcccccccccc
Confidence 56667778888888888887754
No 173
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=53.76 E-value=18 Score=32.68 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.8
Q ss_pred CCcchhhhHHHHHHHHHHhhhhcc
Q 021949 264 GLGFGTGLLGGMLGGLLIGDIVSD 287 (305)
Q Consensus 264 g~g~~~g~~~g~~~g~~~~~~~~~ 287 (305)
.+..++|++||+|.+-+|..|++.
T Consensus 141 A~~TAAGVAGG~lL~n~i~~lF~~ 164 (247)
T PF09849_consen 141 AAQTAAGVAGGMLLANGIESLFGG 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999998888877754
No 174
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.31 E-value=10 Score=34.81 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=13.0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHH
Q 021949 259 KKSNGGLGFGTGLLGGMLGGLLI 281 (305)
Q Consensus 259 ~~~~~g~g~~~g~~~g~~~g~~~ 281 (305)
..++++.||.+||++| |.++++
T Consensus 28 ~~~~~~g~l~ggl~~g-l~~~~~ 49 (281)
T COG4395 28 FFSGMLGGLAGGLLMG-LSGMFF 49 (281)
T ss_pred hhhhhhhHHHHHHHHh-HHHHHH
Confidence 4455666677777777 444443
No 175
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=50.61 E-value=52 Score=34.99 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=39.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCC--cEEEEEEecCCCCCCceEEeEecCCCCCCCeeeceEEEEeccchhccCceEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMD--VYAVVSISGDHTIKKQKVKSHVDRSGGSNPTWNFPIKFTFNQSLAQQNRLTLDFK 82 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~d--pYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~Wne~f~f~v~~~~~~~~~~~L~v~ 82 (305)
+.++|+++....+ ++..+.| .+|.+.+-...-.-.+..+|.- .++..++.||+.+.|+|.-.++- +...|-|.
T Consensus 343 ~~frI~l~~is~~---n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~-v~~~~~~~Wn~~leFDI~i~DLP-r~ArLc~~ 417 (1076)
T KOG0904|consen 343 RPFRIKLVGISKV---NLPETVDLKVFVEAGLYHGTEVLCKTRSTSE-VPGCSFPLWNEWLEFDIYIKDLP-RMARLCLA 417 (1076)
T ss_pred CceEEEEeecccc---CCCcccceEEEEEEEEEECCeehhcccccCC-CCCccchhccceeEeeeecCCCC-hhhhheee
Confidence 4577888876654 2323434 4555444322100011122322 23367899999988876433221 23456666
Q ss_pred EEec
Q 021949 83 IKSD 86 (305)
Q Consensus 83 V~d~ 86 (305)
|+.-
T Consensus 418 i~~v 421 (1076)
T KOG0904|consen 418 IYAV 421 (1076)
T ss_pred eeEe
Confidence 6553
No 176
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.79 E-value=21 Score=36.58 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=32.8
Q ss_pred CeeeceEEEEeccchhccCceEEEEEEEecCCC-CCcceeEEEEeCc
Q 021949 57 PTWNFPIKFTFNQSLAQQNRLTLDFKIKSDGLL-GDKTVGEVIVPIK 102 (305)
Q Consensus 57 P~Wne~f~f~v~~~~~~~~~~~L~v~V~d~~~~-~d~~IG~~~vpL~ 102 (305)
-.|||=++|.+.-..+.. +..|.|.+|+.+.- ...|+|..++.|.
T Consensus 77 ~~wnewLtlpvky~dLt~-~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTR-NAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred cchhhhhccccccccccc-cceEEEEEEecCCCceeeeccceEEEee
Confidence 459998888876655543 37899999996544 5678888777653
No 177
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=45.76 E-value=28 Score=33.64 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=30.6
Q ss_pred ceeEEEEeCcccccccCCCCCCCCCcceEEEEEeecCCCCC--ccEEEEEEEEecc
Q 021949 93 TVGEVIVPIKELLDSSSSSSSGDAKSMKFVTYQVRSSSGKP--KGELHFSYKFSEP 146 (305)
Q Consensus 93 ~IG~~~vpL~~l~~~~~~~~~~~g~~~~~~~~~l~~~~g~~--~G~l~lsl~~~~~ 146 (305)
+||++.|++++++... . ....||++.+...+. .|.| |++++.+.
T Consensus 1 ~~G~v~i~~~~~~~~~----~-----~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRG----L-----DKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCC----C-----CceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 4899999999976533 1 246899999854443 4556 67777765
No 178
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=41.41 E-value=2e+02 Score=30.37 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=10.9
Q ss_pred CcceeEEEEeCccccc
Q 021949 91 DKTVGEVIVPIKELLD 106 (305)
Q Consensus 91 d~~IG~~~vpL~~l~~ 106 (305)
|..+|...|+.+.|..
T Consensus 506 D~~lGVt~IP~~kLt~ 521 (894)
T KOG0132|consen 506 DVELGVTYIPWEKLTD 521 (894)
T ss_pred hcccCeeEeehHhcCH
Confidence 3457888888777754
No 179
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=38.10 E-value=52 Score=25.34 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=26.1
Q ss_pred CCCCCCCeeeceEEEEeccchhc-cCceEEEEEEEecC
Q 021949 51 RSGGSNPTWNFPIKFTFNQSLAQ-QNRLTLDFKIKSDG 87 (305)
Q Consensus 51 k~~~~nP~Wne~f~f~v~~~~~~-~~~~~L~v~V~d~~ 87 (305)
.++..=..|.++|.+.|..+.+. .....|+|.|||.+
T Consensus 46 ~gd~~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 46 EGDQVWVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred cCCEEEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 34344588899999998766542 24468999999864
No 180
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=37.53 E-value=24 Score=31.09 Aligned_cols=24 Identities=33% Similarity=0.810 Sum_probs=12.0
Q ss_pred CCcchhhhHHHHHHHHHHhhhhccc
Q 021949 264 GLGFGTGLLGGMLGGLLIGDIVSDA 288 (305)
Q Consensus 264 g~g~~~g~~~g~~~g~~~~~~~~~~ 288 (305)
|+.+|+||+||+++ ++++.|+.|.
T Consensus 109 g~~~G~GlaGalig-~~ada~v~D~ 132 (215)
T PF05818_consen 109 GAAIGAGLAGALIG-MIADAMVEDV 132 (215)
T ss_pred chhhhhhHHHhHHH-HHHhhhcccc
Confidence 33455566555444 4445555543
No 181
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=34.12 E-value=37 Score=24.31 Aligned_cols=16 Identities=44% Similarity=0.735 Sum_probs=7.7
Q ss_pred cchhhhHHHHHHHHHH
Q 021949 266 GFGTGLLGGMLGGLLI 281 (305)
Q Consensus 266 g~~~g~~~g~~~g~~~ 281 (305)
|+.+|++.|++.|+|+
T Consensus 4 g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555553
No 182
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.98 E-value=52 Score=36.24 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=55.7
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC---CCCceEEeEecCCCCCCCe--eeceEEEEeccchhccCceEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHT---IKKQKVKSHVDRSGGSNPT--WNFPIKFTFNQSLAQQNRLTL 79 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~---~~~~~~kT~v~k~~~~nP~--Wne~f~f~v~~~~~~~~~~~L 79 (305)
..|.++|..+..+...-...-.|-|..+++..... +..++.|| +++++.-|. |++-+.|++.-.. -.+...|
T Consensus 635 ~~L~ftv~a~H~ip~~W~s~yedfyl~~~l~hg~k~l~~p~~t~k~--~~~~~~F~ri~~d~~i~Fp~~i~~-lPREt~L 711 (1639)
T KOG0905|consen 635 DFLQFTVYAAHRIPENWVSQYEDFYLSCSLSHGTKDLDKPNQTPKT--ITSKHFFPRIPWDLYIKFPRQICQ-LPRETRL 711 (1639)
T ss_pred cceeeeeecccCCChHhhhhhhhheEEEeeecCceecccccccccc--ccccccccccchhhhhcchHHHhh-CChhheE
Confidence 45788888888886543334567888888764211 11223333 333345554 8877788764221 2234578
Q ss_pred EEEEEecCCC--C-----------CcceeEEEEeCcccc
Q 021949 80 DFKIKSDGLL--G-----------DKTVGEVIVPIKELL 105 (305)
Q Consensus 80 ~v~V~d~~~~--~-----------d~~IG~~~vpL~~l~ 105 (305)
+|.++-.-.. + -..+|+|.+||-+..
T Consensus 712 ~~tL~G~~~~s~gan~d~n~err~~~~LGw~slpLfdf~ 750 (1639)
T KOG0905|consen 712 TVTLFGIVRASAGANADQNKERRVPEALGWCSLPLFDFR 750 (1639)
T ss_pred EEEEeeeecCCCCCCchhcccccchhhhheeeccccchh
Confidence 8888753211 1 145777777766654
No 183
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=33.10 E-value=2.4e+02 Score=22.17 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=49.0
Q ss_pred ceEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCCceEEeEecCCCCCCCee-eceEEEEeccchhccCceEEEEEE
Q 021949 5 RALDLNLISAKHLKDVHLISKMDVYAVVSISGDHTIKKQKVKSHVDRSGGSNPTW-NFPIKFTFNQSLAQQNRLTLDFKI 83 (305)
Q Consensus 5 ~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~~~~~~~~~kT~v~k~~~~nP~W-ne~f~f~v~~~~~~~~~~~L~v~V 83 (305)
..|.|+-+.-..+...+..+..+||++|.-... ....|..... ..-.. ...+.|.+.....-. .-+.|++
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~-----~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~--GDV~i~~ 74 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGK-----KVFSTSKSYE--DPKSYEQDSVIIELPKNLPLR--GDVLIKF 74 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTE-----EEEETCCTCC--CCCEEETTCEEEEEEEEEEEE--SEEEEEE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCc-----cEEEecccee--ccccccceeEEEEeCCCCeEe--CCEEEEE
Confidence 456666666667766554566799999986541 2223322111 11111 133445444221111 3578888
Q ss_pred EecCC--CCCcceeEEEEeCcccc
Q 021949 84 KSDGL--LGDKTVGEVIVPIKELL 105 (305)
Q Consensus 84 ~d~~~--~~d~~IG~~~vpL~~l~ 105 (305)
|+.+. ..++.+.++++.-.-+.
T Consensus 75 ~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 75 YHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp EECETTECCCEEEEEEEEEGGGSB
T ss_pred EeCCCcccccCeEEEEEEeeeeee
Confidence 88773 36677888877655444
No 184
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=32.99 E-value=81 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=22.9
Q ss_pred cceEEEEEeecCC---CCCccEEEEEEEEecc
Q 021949 118 SMKFVTYQVRSSS---GKPKGELHFSYKFSEP 146 (305)
Q Consensus 118 ~~~~~~~~l~~~~---g~~~G~l~lsl~~~~~ 146 (305)
.+...|..|.+++ ...+|.|+++|.+..+
T Consensus 13 ~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 13 QFYRKWALLTDPDDTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred eeEeceEEecCCCCCccCCceEEEEEEEEEcC
Confidence 4567788888753 4579999999999876
No 185
>PRK10404 hypothetical protein; Provisional
Probab=32.61 E-value=28 Score=26.88 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=10.4
Q ss_pred chhhhHHHHHHHHHHh
Q 021949 267 FGTGLLGGMLGGLLIG 282 (305)
Q Consensus 267 ~~~g~~~g~~~g~~~~ 282 (305)
+|.+++.|+|.|+|++
T Consensus 84 vGiaagvGlllG~Ll~ 99 (101)
T PRK10404 84 IGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555556777777764
No 186
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=31 Score=26.77 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=11.4
Q ss_pred cchhhhHHHHHHHHHHh
Q 021949 266 GFGTGLLGGMLGGLLIG 282 (305)
Q Consensus 266 g~~~g~~~g~~~g~~~~ 282 (305)
++|.+++.|+|.|+|++
T Consensus 86 ~VGvaAaVGlllGlLls 102 (104)
T COG4575 86 GVGVAAAVGLLLGLLLS 102 (104)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35556666777787775
No 187
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.00 E-value=31 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHhhhh
Q 021949 270 GLLGGMLGGLLIGDIV 285 (305)
Q Consensus 270 g~~~g~~~g~~~~~~~ 285 (305)
.-++|+.|||++++++
T Consensus 144 qTAAGVAGGMlL~n~L 159 (233)
T COG3416 144 QTAAGVAGGMLLANGL 159 (233)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 3344445555554443
No 188
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.02 E-value=43 Score=25.10 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=9.7
Q ss_pred chhhhHHHHHHHHHHh
Q 021949 267 FGTGLLGGMLGGLLIG 282 (305)
Q Consensus 267 ~~~g~~~g~~~g~~~~ 282 (305)
+|.+++.|+|.|+|++
T Consensus 77 vgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555556667776654
No 189
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=25.68 E-value=1.1e+02 Score=24.51 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=21.5
Q ss_pred ccceEEEEEEEecCCCCCCCCCCCCcEEEEEEecC
Q 021949 3 SYRALDLNLISAKHLKDVHLISKMDVYAVVSISGD 37 (305)
Q Consensus 3 ~~~~L~V~vvsA~dL~~~~~~gk~dpYv~v~l~~~ 37 (305)
+.++..|++++++++++.. -+.|.+++..+
T Consensus 38 aTGeytItfls~r~vqetQ-----p~~vhi~v~d~ 67 (142)
T PF05660_consen 38 ATGEYTITFLSARNVQETQ-----PAVVHISVMDD 67 (142)
T ss_pred ccCceEEEEEeccchhhcC-----CceEEEEEEec
Confidence 4567789999999998653 35566777654
No 190
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=24.48 E-value=2.2e+02 Score=26.75 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=11.9
Q ss_pred CCcchhhhHHHHHHHHHHhhh
Q 021949 264 GLGFGTGLLGGMLGGLLIGDI 284 (305)
Q Consensus 264 g~g~~~g~~~g~~~g~~~~~~ 284 (305)
+-|+=-||++|.|+|-|++.-
T Consensus 251 gPGFWTGla~Gg~aGYl~G~r 271 (318)
T PF06682_consen 251 GPGFWTGLAAGGAAGYLFGRR 271 (318)
T ss_pred CCCchHHHHHHHHHHhhhccC
Confidence 334445666666666666543
No 191
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=24.12 E-value=3e+02 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=17.7
Q ss_pred CCeee--ceEEEEeccchhccCceEEEEEEEecCCC
Q 021949 56 NPTWN--FPIKFTFNQSLAQQNRLTLDFKIKSDGLL 89 (305)
Q Consensus 56 nP~Wn--e~f~f~v~~~~~~~~~~~L~v~V~d~~~~ 89 (305)
+-.|. +++.|++...+.. ....|.|.|++....
T Consensus 35 ~~~W~k~d~l~F~~~~~d~~-~~y~l~l~lR~n~~Y 69 (156)
T TIGR03511 35 HGGWQKSDTLDFEIPITDYT-ASYRLFLLIRNDNRY 69 (156)
T ss_pred ccCcCCCCcEEEEEeecCCC-CcEEEEEEEEcCCCC
Confidence 34574 4455554433321 346777888776654
No 192
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.90 E-value=3.6e+02 Score=24.37 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCCCeeeceEEEEeccchhccCceEEEEEE-EecCCC--CCcceeEEEEeCccc
Q 021949 54 GSNPTWNFPIKFTFNQSLAQQNRLTLDFKI-KSDGLL--GDKTVGEVIVPIKEL 104 (305)
Q Consensus 54 ~~nP~Wne~f~f~v~~~~~~~~~~~L~v~V-~d~~~~--~d~~IG~~~vpL~~l 104 (305)
+.-|.-|..++.+|.-.. +|+|+. |+++.. +|..||...+-|-.+
T Consensus 154 ~~~P~~nn~IkmeVGIed------CLHIEFEYnKskYhLkdvIvGkIYFlLvRi 201 (301)
T KOG3063|consen 154 STYPEINNSIKMEVGIED------CLHIEFEYNKSKYHLKDVIVGKIYFLLVRI 201 (301)
T ss_pred ccCCCCCCceeEeechhh------ceEEEEEecccccchhheEEeeEEEEEEEE
Confidence 455667767777775443 566664 344433 788899876655444
No 193
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=22.64 E-value=61 Score=29.10 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=10.8
Q ss_pred cchhhhHHHHHHHHHHhhhhcc
Q 021949 266 GFGTGLLGGMLGGLLIGDIVSD 287 (305)
Q Consensus 266 g~~~g~~~g~~~g~~~~~~~~~ 287 (305)
.+|+||++|++| ++.+.|+.|
T Consensus 141 ~~G~Glagglig-~~ada~veD 161 (243)
T PRK13731 141 TLGVGLAAGLVG-MAADAMVED 161 (243)
T ss_pred hHHHHHHHHHHH-HHhhhhhhe
Confidence 455666665444 344445554
No 194
>PF14109 GldH_lipo: GldH lipoprotein
Probab=21.22 E-value=4.3e+02 Score=21.11 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=15.8
Q ss_pred Ceee--ceEEEEeccchhccCceEEEEEEEecCCC
Q 021949 57 PTWN--FPIKFTFNQSLAQQNRLTLDFKIKSDGLL 89 (305)
Q Consensus 57 P~Wn--e~f~f~v~~~~~~~~~~~L~v~V~d~~~~ 89 (305)
-.|+ +++.|.+...... ....|.|.|++.+..
T Consensus 14 ~~W~~~d~~~F~~~~~dt~-~~Y~l~l~lR~~~~Y 47 (131)
T PF14109_consen 14 GGWEKNDTLSFDFPIQDTT-GPYNLYLNLRNNNDY 47 (131)
T ss_pred cccCCCCcEEEEccccccC-CeeEEEEEEEcCCCC
Confidence 3564 3455555333211 235666677666554
No 195
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=21.11 E-value=1.3e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.9
Q ss_pred EEEEEEEecCCC-CCcceeEEEE
Q 021949 78 TLDFKIKSDGLL-GDKTVGEVIV 99 (305)
Q Consensus 78 ~L~v~V~d~~~~-~d~~IG~~~v 99 (305)
..+|++|+++.+ .|++|+++..
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEE
Confidence 467999999975 7889988766
No 196
>PRK10132 hypothetical protein; Provisional
Probab=20.82 E-value=68 Score=25.09 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=9.9
Q ss_pred chhhhHHHHHHHHHHh
Q 021949 267 FGTGLLGGMLGGLLIG 282 (305)
Q Consensus 267 ~~~g~~~g~~~g~~~~ 282 (305)
+|.+++.|+|.|+|++
T Consensus 90 vgiaagvG~llG~Ll~ 105 (108)
T PRK10132 90 VGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555777777764
No 197
>PRK11280 hypothetical protein; Provisional
Probab=20.14 E-value=86 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhhc
Q 021949 272 LGGMLGGLLIGDIVS 286 (305)
Q Consensus 272 ~~g~~~g~~~~~~~~ 286 (305)
++|+++|.+++..++
T Consensus 93 ~~Ga~~G~~~G~~i~ 107 (170)
T PRK11280 93 VAGALGGGYAGNQIQ 107 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445544443
No 198
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=86 Score=25.37 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHhhhh
Q 021949 268 GTGLLGGMLGGLLIGDIV 285 (305)
Q Consensus 268 ~~g~~~g~~~g~~~~~~~ 285 (305)
+.||+.|++.|+++..+.
T Consensus 12 ~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 12 LIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 567777777777776543
Done!