Your job contains 1 sequence.
>021950
MMQPAPGAVPPPPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWATQA
AAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG
QIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGD
LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF
CSTRPMRIGPATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNIS
TSSTH
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021950
(305 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 771 1.5e-76 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 765 6.3e-76 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 710 4.3e-70 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 679 8.2e-67 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 678 1.1e-66 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 671 5.8e-66 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 669 9.4e-66 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 666 2.0e-65 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 628 2.1e-61 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 615 5.0e-60 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 459 1.7e-43 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 448 2.5e-42 1
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 396 8.0e-37 1
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 396 8.0e-37 1
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 396 8.0e-37 1
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 395 1.0e-36 1
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 394 1.3e-36 1
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 394 1.3e-36 1
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 391 2.7e-36 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 366 4.9e-33 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 358 8.5e-33 1
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 348 9.8e-32 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 312 6.4e-28 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 291 1.1e-25 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 289 4.5e-25 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 273 2.8e-23 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 265 1.1e-22 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 262 2.7e-22 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 254 2.3e-21 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 251 3.7e-21 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 251 1.0e-20 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 236 7.6e-19 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 229 1.7e-18 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 218 5.8e-18 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 223 7.8e-18 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 220 8.2e-18 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 220 8.7e-18 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 220 1.5e-17 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 215 1.8e-17 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 220 2.3e-17 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 219 8.1e-17 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 213 1.0e-16 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 206 1.1e-16 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 206 1.1e-16 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 208 1.8e-16 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 209 1.8e-16 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 209 1.8e-16 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 207 2.7e-16 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 206 3.1e-16 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 204 7.5e-16 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 204 7.8e-16 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 204 7.8e-16 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 204 7.8e-16 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 204 7.8e-16 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 204 7.8e-16 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 204 7.8e-16 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 205 8.0e-16 1
WB|WBGene00011589 - symbol:T07F10.3 species:6239 "Caenorh... 201 1.1e-15 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 199 2.4e-15 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 196 3.8e-15 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 196 3.9e-15 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 196 4.6e-15 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 196 4.6e-15 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 196 4.7e-15 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 196 4.7e-15 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 196 4.7e-15 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 196 4.7e-15 1
ZFIN|ZDB-GENE-040809-2 - symbol:rbm42 "RNA binding motif ... 196 5.1e-15 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 199 6.5e-15 1
FB|FBgn0037342 - symbol:CG2931 species:7227 "Drosophila m... 190 7.2e-15 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 188 9.0e-15 1
UNIPROTKB|K7EQ03 - symbol:RBM42 "RNA-binding protein 42" ... 194 1.0e-14 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 187 1.1e-14 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 187 1.1e-14 1
UNIPROTKB|F1N7X9 - symbol:RBM42 "RNA-binding protein 42" ... 194 1.1e-14 1
UNIPROTKB|Q0P5L0 - symbol:RBM42 "RNA-binding protein 42" ... 194 1.1e-14 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 190 1.2e-14 1
UNIPROTKB|K7EP90 - symbol:RBM42 "RNA-binding protein 42" ... 194 1.2e-14 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 192 1.3e-14 1
MGI|MGI:1915285 - symbol:Rbm42 "RNA binding motif protein... 194 1.3e-14 1
RGD|1306184 - symbol:Rbm42 "RNA binding motif protein 42"... 194 1.3e-14 1
UNIPROTKB|Q6AXT7 - symbol:Rbm42 "RNA-binding protein 42" ... 194 1.3e-14 1
UNIPROTKB|F1RM56 - symbol:RBM42 "Uncharacterized protein"... 194 1.3e-14 1
UNIPROTKB|Q9BTD8 - symbol:RBM42 "RNA-binding protein 42" ... 194 1.3e-14 1
UNIPROTKB|F1PT81 - symbol:RBM42 "Uncharacterized protein"... 194 1.3e-14 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 196 1.5e-14 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 190 1.5e-14 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 190 1.8e-14 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 190 1.8e-14 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 197 1.8e-14 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 197 1.8e-14 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 185 1.8e-14 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 190 1.8e-14 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 190 1.9e-14 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 190 1.9e-14 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 190 2.0e-14 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 190 2.0e-14 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 190 2.0e-14 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 190 2.0e-14 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 190 2.1e-14 1
WARNING: Descriptions of 712 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 145/183 (79%), Positives = 162/183 (88%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQTGQ+EGYGFIEF S A AERV
Sbjct: 60 EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Query: 140 LQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
LQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIFVGDLAADVTDY+L ETFRA Y
Sbjct: 120 LQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASY 179
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
PS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMNGV CSTRPMRIGPA +KK V+
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
Query: 259 GQQ 261
GQ+
Sbjct: 240 GQR 242
Score = 154 (59.3 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 60/201 (29%), Positives = 92/201 (45%)
Query: 83 TLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
T+++GDL + D L T A V KV+ ++ TG+ +GYGF+ F + R +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 142 TFNGTPM---P---------NGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDY 188
NG P P G R ++ S AG D+ P++T +FVG L A VTD
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+ F ++Y K+ G K GFV+F ++S A+ +NGV +R+
Sbjct: 276 HLKNVF-SQYGEIVHVKIP----AG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
Query: 249 G---PATNKKTVSGQQQYPKG 266
+NK++ Q Y G
Sbjct: 329 SWGRSPSNKQSGDPSQFYYGG 349
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 140/183 (76%), Positives = 160/183 (87%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ KVIRNKQTGQ EGYGF+EF S A AE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MPN EQNFR+NWAS GAGE+RDD+ +HTIFVGDLAADVTDY+LQETF++ Y
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYS 201
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV DR+TGR+KGYGFV+F DESEQLRAMTEMNGV CSTRPMRIGPA NKK V
Sbjct: 202 SVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGT 261
Query: 260 QQQ 262
Q+
Sbjct: 262 PQK 264
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 54/211 (25%), Positives = 92/211 (43%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
T+++GDL + + L F V KV+ ++ TG+ +GYGF++F + R +
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 142 TFNGT-----PM---------PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
NG PM P G + + + A + D + TIFVG L V +
Sbjct: 237 EMNGVLCSTRPMRIGPAANKKPVGTPQ-KATYQNPQATQGESDPNNTTIFVGGLDPTVAE 295
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F S G V + + G K GFV+FG + +A++ +NG + +R
Sbjct: 296 EHLRQVF-----SPYGELVHVKIVAG--KRCGFVQFGTRASAEQALSSLNGTQLGGQSIR 348
Query: 248 IG---PATNKKTVSGQQQYPKGTFLVVGTGF 275
+ ++K+T Q G + G G+
Sbjct: 349 LSWGRSPSSKQTDQTQWGGSGGAYYGYGQGY 379
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 133/184 (72%), Positives = 151/184 (82%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 QQQY 263
QQQY
Sbjct: 202 QQQY 205
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 127/183 (69%), Positives = 148/183 (80%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFIEF+S + AERV
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VTDYML +TF+
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPMRIGPA NK +
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 258 SGQ 260
Q
Sbjct: 238 PMQ 240
Score = 150 (57.9 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 58/206 (28%), Positives = 97/206 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
G T+++GDL + + L+ F + G V KV+ ++ TG+ +GYGF+ F
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210
Query: 138 RVLQTFNGT-----PM---PNGEQN-FRLNWASF----GAGEKRDDTPDHTIFVGDLAAD 184
R + NG PM P +N + A + GA +D + TIFVG L A+
Sbjct: 211 RAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
VTD L+ F ++ K+ G K GFV++ +++ A++ +NG +
Sbjct: 271 VTDDELKSIF-GQFGELLHVKIP----PG--KRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 245 PMRI--GPATNKKTVSGQQQYPKGTF 268
+R+ G + NK+ S Q Q+ G +
Sbjct: 324 SIRLSWGRSPNKQ--SDQAQWNGGGY 347
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 129/183 (70%), Positives = 146/183 (79%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GEIR+LWIGDLQ WMDE YL F TGE A KVIRNKQ G EGYGFIEF++ A AER
Sbjct: 77 GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGE+R + P+HT+FVGDLA DVTD+ML ETF+A
Sbjct: 137 NLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV DR TGR+KGYGFVRF DESEQ+RAMTEMNG +CS+RPMR GPA NKK +
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 258 SGQ 260
+ Q
Sbjct: 257 TMQ 259
Score = 135 (52.6 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 55/204 (26%), Positives = 93/204 (45%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
G T+++GDL + + L F A V KV+ ++ TG+ +GYGF+ F +
Sbjct: 170 GPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI 229
Query: 138 RVLQTFNGT-----PMPNG----EQNFRLNWASFG--AGEKRDDTPDHT-IFVGDLAADV 185
R + NG PM G ++ + AS+ G + P +T IFVG + V
Sbjct: 230 RAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSV 289
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
T+ L+ F ++ G V + G K GFV++ + + +A++ +NG +
Sbjct: 290 TEDDLKSVF-GQF----GELVHVKIPAG--KRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 246 MRIG---PATNKKTVSGQQQYPKG 266
+R+ +NK+T Q QY G
Sbjct: 343 IRLSWGRSPSNKQTQPDQAQYGGG 366
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 129/198 (65%), Positives = 155/198 (78%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 258 S-GQQQYPKGTFLVVGTG 274
+ GQQ + L G G
Sbjct: 297 AYGQQNGSQALTLAGGHG 314
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 121/195 (62%), Positives = 155/195 (79%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA AE V
Sbjct: 106 DVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEV 165
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L ETF R
Sbjct: 166 LQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDR 225
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT K+ +
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAI 285
Query: 258 SGQQQYPKGTFLVVG 272
+ QQQ+ ++ G
Sbjct: 286 ANQQQHSSQAVILAG 300
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 126/192 (65%), Positives = 154/192 (80%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF + A AE+VLQ
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARYPS 200
++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD ML++TF +RYPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG AT KK S
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKP-SAH 262
Query: 261 QQYPKGTFLVVG 272
+QY ++ G
Sbjct: 263 EQYSSQAVILSG 274
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 125/197 (63%), Positives = 149/197 (75%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF S A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
Query: 255 KTVSGQQQ--Y-PKGTF 268
KT QQQ Y P G F
Sbjct: 280 KTNGYQQQGGYMPSGAF 296
Score = 138 (53.6 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 51/197 (25%), Positives = 88/197 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + + L+ F+ V A KV+ + TG+ +GYGF+ F + +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 142 TFNG-------------TPMP-NGEQNFRLNWASFGAGEKRD-DTPDHTIFVGDLAADVT 186
NG TP NG Q + + GA + + DT + TIFVG L + VT
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQ-QGGYMPSGAFTRSEGDTINTTIFVGGLDSSVT 318
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + K+ + KG GFV+F + A+ ++NG + +
Sbjct: 319 DEDLKQPF-SEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Query: 247 RIGPATNKKTVSGQQQY 263
R+ N + +Y
Sbjct: 372 RLSWGRNPANKQPRDKY 388
Score = 120 (47.3 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + + L F+ GE+V+VK+ K G GF++F++R AE L+
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 360
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEK-RDDTPDHTI--FVGDLAADVTDYMLQETFRARYP 199
NGT + G+Q RL+W A ++ RD + + + G + YM+ + YP
Sbjct: 361 LNGTVI--GKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYP 418
Query: 200 S 200
+
Sbjct: 419 A 419
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 123/196 (62%), Positives = 149/196 (76%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSGQQQ--Y-PKGT 267
KT QQQ Y P GT
Sbjct: 278 KTNGYQQQGGYMPNGT 293
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 49/197 (24%), Positives = 85/197 (43%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + + L+ F+ V A KV+ + TG+ +GYGF+ F + +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 142 TFNG-------------TPMP-NGEQNFRLNWASFGAGEKRD-DTPDHTIFVGDLAADVT 186
NG TP NG Q + + G + + D + TIFVG L + VT
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQ-QGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVT 316
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + K+ + KG GFV+F + A+ ++NG + +
Sbjct: 317 DEDLKQPFN-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369
Query: 247 RIGPATNKKTVSGQQQY 263
R+ N + +Y
Sbjct: 370 RLSWGRNPANKQPRDKY 386
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + + L F GE+V+VK+ K G GF++F++R AE L+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 358
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEK-RDDTPDHTI--FVGDLAADVTDYMLQETFRARYP 199
NGT + G+Q RL+W A ++ RD + + + G + YM+ + YP
Sbjct: 359 LNGTVI--GKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYP 416
Query: 200 S 200
+
Sbjct: 417 A 417
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 93/189 (49%), Positives = 133/189 (70%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+TLW+G+L+ WMDE ++ ++ GE V VKVIR++Q+G GY F+EF S A + L
Sbjct: 47 KTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNA-GYCFVEFPSSEAATKAL 105
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAG--EKRDDT-PDHTIFVGDLAADVTDYMLQETFRAR 197
NG+P+PN ++ F+LNWAS G G ++RD+ P+++IFVGDL +V +++L F+AR
Sbjct: 106 G-LNGSPVPNSQRVFKLNWAS-GGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQAR 163
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+PS K AK++ D +TG+++GYGFVRF DES+Q RA+ EM GV+C RPMRI AT KT
Sbjct: 164 FPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTAT-PKTR 222
Query: 258 SGQQQYPKG 266
S QQ +G
Sbjct: 223 SHQQYGNQG 231
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 87/181 (48%), Positives = 125/181 (69%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQ 141
TLW+G+L+ W+DE ++ + GE V VK+IR+K +G+ GY F++F S A A + L
Sbjct: 66 TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL- 124
Query: 142 TFNGTPMPNGEQNFRLNWASFG--AGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARY 198
+ NGTPMPN + F+LNWA+ G A RDD P+++IFVGDL +V +Y+L F++R+
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
PS K AK++ D ++G ++GYGFVRF DE++Q RA++EM GV+C RPMRI AT K
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKGP 244
Query: 259 G 259
G
Sbjct: 245 G 245
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 87/189 (46%), Positives = 124/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK---- 254
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 87/189 (46%), Positives = 124/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK---- 254
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 87/189 (46%), Positives = 124/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK---- 254
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 86/189 (45%), Positives = 123/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNK---- 254
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 86/189 (45%), Positives = 124/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE+V +VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL ADV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIG---PATNK- 254
S +G KVV+D+ G +KGYGFV+F DE EQ RA+TE G V ++P+R+ P N+
Sbjct: 122 SCRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKANRM 180
Query: 255 KTVSGQQQY 263
K Q Y
Sbjct: 181 KPTEYNQMY 189
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 87/189 (46%), Positives = 123/189 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK---- 254
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 87/189 (46%), Positives = 122/189 (64%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK---- 254
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 255 KTVSGQQQY 263
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 366 (133.9 bits), Expect = 4.9e-33, P = 4.9e-33
Identities = 77/182 (42%), Positives = 107/182 (58%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VS 258
S
Sbjct: 265 AS 266
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 73/174 (41%), Positives = 106/174 (60%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 143 FNGTPMPNGEQNFRLNWASFGA-GEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P+P F+LNWAS G EK +++IFVGDL+ +V ++ + F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 72/176 (40%), Positives = 109/176 (61%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 142 TFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++P
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFP 124
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNK 254
S KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK
Sbjct: 125 SCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/175 (41%), Positives = 106/175 (60%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
LW+G L+ +M E ++ F GE V+++RNK TG+ GY F+ FIS A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 143 FNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG P+P N FRLN AS + + + + +++VGDL++DV DY L + F +++ S
Sbjct: 68 LNGKPIPGTNPIVRFRLNSAS-NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTS 126
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 254
K AKV++D L G +KGYGFVRFG E EQ A+ +MNG + T+P++I A K
Sbjct: 127 IKTAKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---N 253
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+ N
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 254 KKTVSGQQQ 262
KK S + Q
Sbjct: 177 KKKESSENQ 185
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 289 (106.8 bits), Expect = 4.5e-25, P = 4.5e-25
Identities = 69/183 (37%), Positives = 102/183 (55%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVL 140
R L++G L + E L F TG V++VK+I +K + YGF+EF AER +
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAM 149
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
QT NG + E R+NWA ++DT +H IFVGDL+ +V D +L + F A +
Sbjct: 150 QTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-FG 206
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S A+V+ D TGR++GYGFV F + ++ +A+T M+G + +R +R A K S
Sbjct: 207 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSI 266
Query: 260 QQQ 262
QQ
Sbjct: 267 SQQ 269
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 273 (101.2 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 69/184 (37%), Positives = 100/184 (54%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G L + E L F TG V VK+I +K YGF+E+ A+R +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN-YGFVEYDDPGAADRAMQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGA-GEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
T NG + E R+NWA A ++DT +H IFVGDL+ +V D +L + F +
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSV-FG 200
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS- 258
S A+V+ D TGR++GYGFV F D S+ +A++ M+G + +R +R A K S
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 259 GQQQ 262
QQQ
Sbjct: 261 AQQQ 264
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 265 (98.3 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 65/191 (34%), Positives = 108/191 (56%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L FA TG V + K+IR +++ YGF+ + R A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + +G+ R+DT H IFVGDL+ +VTD ML F YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSSHFNIFVGDLSPEVTDAMLFTCFSV-YPT 164
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
A+V+ D+ TGR++G+GFV F ++ + A+ E+ G + +R +R AT K SG+
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT-KGATSGE 223
Query: 261 QQYPKGTFLVV 271
+ + VV
Sbjct: 224 DKQSSDSKSVV 234
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/104 (25%), Positives = 53/104 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + L TCF+ +V+ +++TG+ G+GF+ F ++ A+ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
G + G + R NWA+ GA D + V +L + V++
Sbjct: 201 TGKWL--GSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSE 242
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 262 (97.3 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 63/182 (34%), Positives = 103/182 (56%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L F TG V + K+IR ++ YGF+ + R A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDATLYQSFSV-FSS 169
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT K SG
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT-KGATSGD 228
Query: 261 QQ 262
+
Sbjct: 229 DK 230
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 254 (94.5 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 64/193 (33%), Positives = 105/193 (54%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R+++ G++ + E L FA TG + + K+IR ++ YGF+ + R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
T NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F A
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 201 T---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT T
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATF 234
Query: 258 SGQQQYPKGTFLV 270
+ G +V
Sbjct: 235 GEDKHSSDGKSVV 247
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 251 (93.4 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 66/187 (35%), Positives = 99/187 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E RTL++G+L + E ++ T F G V KVI + G + Y F+EF A +
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQA 100
Query: 140 LQTFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
LQT N + + E ++NWA G + + DT H +FVGDL+++V + L+E F+
Sbjct: 101 LQTMNKRLLLDREM--KVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP- 157
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ AKV+ D T ++KGYGFV + E RA+ +MNG + R +R AT K
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP-- 215
Query: 258 SGQQQYP 264
G Q+ P
Sbjct: 216 -GDQEKP 221
Score = 154 (59.3 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 48/170 (28%), Positives = 86/170 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL +D L F G+V KVIR+ T + +GYGF+ + R AER ++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 144 NGTPMPNGEQNFRLNWASFGAG---------EKRDD------TPDHT-IFVGDLAADVTD 187
NG + G + R NWA+ G EK D + D+T ++VG++A+ +T+
Sbjct: 197 NGQWL--GRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTE 253
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
+++ F A + ++ + +GY FV+F ++ +A+ +MN
Sbjct: 254 DEIRQGF-ASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMN 296
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 251 (93.4 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 59/153 (38%), Positives = 88/153 (57%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------T 175
+GY F++F S A L NG +PN + +LNWA+ + + +
Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDLA +VT+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++E
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 236 MNGVFCSTRPMRIGPATNKKT-VSGQQQYPKGT 267
M GVF + R +++GP + ++ VSG Y + +
Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSS 257
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 236 (88.1 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 60/154 (38%), Positives = 88/154 (57%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPN-------GEQN------FRLNWASFGAGEKRD- 169
GY F+EF ++ A+ L + N TP+PN + N FRLNWAS GA +
Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSI 186
Query: 170 -DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
TP+ ++FVGDL+ T+ L F+ R+ S K +V+ D LTG ++ +GFVRFGDE E
Sbjct: 187 PSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDE 246
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+ RA+ EM+G + R +R+ AT + + Q Q
Sbjct: 247 RRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQ 280
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 229 (85.7 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 54/174 (31%), Positives = 96/174 (55%)
Query: 84 LWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+W+GDL W +E+ N + VK++R++ Y F+ F + + +Q
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 143 FNGTPMPNGEQNFRLNWA---SFGAGEKRDDTP-DHTIFVGDLAADVTDYMLQETFRARY 198
NG +P+ + F+LN++ S G+ ++ ++ +++IF+GDLA +V+D L F +Y
Sbjct: 145 -NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 199 PST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
P+ K AKV+ D T ++KG+GFV+F RA+ EM G ++ +R+G A
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLA 257
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 60/196 (30%), Positives = 101/196 (51%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE L++G+L Y + + L+ F G VV V+++ +K T + G+GF+ S A+
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEK--------RD------DTPDHTIFVGDLAAD 184
+Q FN + + G + ++N+ G + RD D+P H ++ G+L +
Sbjct: 173 AMQMFNSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSP-HKVYAGNLGWN 229
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T L++ F + P GAKV+ +R TGR++G+GF+ F A+ MNGV R
Sbjct: 230 LTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 245 PMRIGPATN--KKTVS 258
+R+ A+ K TVS
Sbjct: 289 ALRLNLASEREKPTVS 304
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 223 (83.6 bits), Expect = 7.8e-18, P = 7.8e-18
Identities = 56/173 (32%), Positives = 84/173 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G+L + E L F G + +K++ +K + Y F+E+ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHDANIALQ 133
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
T NG + N ++NWA DDT +FVGDL +V D L+ F+ +PS
Sbjct: 134 TLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFKD-FPSY 188
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
V+ D TG ++GYGFV F + + AM M G + RP+RI A +
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 220 (82.5 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 55/176 (31%), Positives = 91/176 (51%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 138 (53.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 159 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 217 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 262
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 220 (82.5 bits), Expect = 8.7e-18, P = 8.7e-18
Identities = 55/176 (31%), Positives = 91/176 (51%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 138 (53.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 159 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 217 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 262
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 220 (82.5 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 60/190 (31%), Positives = 93/190 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++ +L + + +L T F G V+ K+I G + Y F+EF A LQ
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQ 96
Query: 142 TFNGTPMPNGEQNFRLNWA--SFGAGEKRD--DTPDHT-IFVGDLAADVTDYMLQETFRA 196
+ NG + E+ + WA GE R +T H +FVGDL +++ L+E F
Sbjct: 97 SHNGRELL--EKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF-V 153
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ AK++ D T + KGYGFV + + RA+ EMNG + R +R AT K
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
Query: 257 VSGQQQYPKG 266
G++ +G
Sbjct: 214 EDGERGGDRG 223
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 215 (80.7 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 54/173 (31%), Positives = 93/173 (53%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++G+L + E + F+ G + K+I + TG + Y F+EF A L
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGN-DPYCFVEFYENRHAAAALA 66
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + ++ ++NWAS + +K+D + +FVGDL+ +++ ++ F A +
Sbjct: 67 AMNGRKILG--KDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAF-APFGKI 123
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGF+ F ++ + A+ +MNG + R +R AT K
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
Score = 158 (60.7 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 53/200 (26%), Positives = 91/200 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G++ +V+++ TG+ +GYGFI FI++ AE +Q
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 144 NGTPMPNGEQNFRLNWASF----------GAGEKR--------DDTPDH-TIFVGDLAAD 184
NG + G + R NWA+ GA K +P + T++ G +A+
Sbjct: 159 NGQWL--GGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASG 216
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
++D ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 217 LSDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFDSHEGAAHAIVSVNGTCIEGH 269
Query: 245 PMRIGPATNKKTVSGQQQYP 264
++ + QQ P
Sbjct: 270 TVKCYWGKETADMRSMQQMP 289
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 220 (82.5 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 59/187 (31%), Positives = 96/187 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ L++G+L E + F+ G V +K++ +K Y FIE+ + A+ L
Sbjct: 79 KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN-YAFIEYDTNEVADMAL 137
Query: 141 QTFNGTPMPNGEQNFRLNWA----SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
T NG + + E ++NWA + + P IFVGDL+ +V D L+ F +
Sbjct: 138 NTLNGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAF-S 194
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ S K A V+ D T R++GYGFV FG++S+ A+ MNG + R +R A++K+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQ 254
Query: 257 VSGQQQY 263
QQ Y
Sbjct: 255 QQ-QQHY 260
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 219 (82.2 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 58/146 (39%), Positives = 83/146 (56%)
Query: 124 GYGFIEFISRAGAERVL----QTFNGTPMP------NGEQN----FRLNWASFGAGEKRD 169
GY F+EF S A+ L Q MP N N FRLNWAS GA
Sbjct: 189 GYCFVEFESFEDAQHALSLNGQLLPDIAMPSQSNFPNNPDNQKKYFRLNWAS-GATLSAP 247
Query: 170 --DTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDE 226
TP++++FVGDL+A T+ L F+ +P S K +V+ D ++G+++ +GFVRF +E
Sbjct: 248 IVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEE 307
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPAT 252
SE+ RA+ EMNG + + RP+R+ AT
Sbjct: 308 SERQRALIEMNGAWFAGRPLRVALAT 333
Score = 90 (36.7 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQT-------GQIE-GYGFIEFIS 132
RTLW+GDL W+DE + + + + V VK+I+ K G GY F+EF S
Sbjct: 138 RTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFVEFES 197
Query: 133 RAGAERVLQTFNGTPMPN 150
A+ L + NG +P+
Sbjct: 198 FEDAQHAL-SLNGQLLPD 214
Score = 77 (32.2 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
G++ D + T+FVG L++DV++ L F+ + + K+ G K GFV++
Sbjct: 512 GQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKIP----PG--KNCGFVKYS 564
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIG----PATNKKTVSGQQQ 262
+ E A+ M G +R+ +NKK QQQ
Sbjct: 565 NREEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQ 606
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 213 (80.0 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 37/99 (37%), Positives = 66/99 (66%)
Query: 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+++ D+ D ++++GDLA DVTD L F+ RYPS + A+V++D TG ++GYGFV+F
Sbjct: 106 QQQSDS-DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFAS 164
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
+ E+ +A+ +MNG + + +P+++ T+K+ S P
Sbjct: 165 DVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIP 203
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 124 (48.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 157 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 214
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
T+ ++++TF + + +V D KGY FVR
Sbjct: 215 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVR 244
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 117
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 38/157 (24%), Positives = 77/157 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 153 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 210
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
T+ ++++TF + + +V D KGY F+R
Sbjct: 211 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFIR 240
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 208 (78.3 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 150 (57.9 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 44/173 (25%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ DD +P + T++ G + + +
Sbjct: 157 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGL 214
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 215 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 260
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 209 (78.6 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 57/207 (27%), Positives = 97/207 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PATNK-KTVSGQQQYPKGTFLVVGTGF 275
+T + T + +G F G GF
Sbjct: 345 FSTPRDNTNNNNNNNRRGGF---GGGF 368
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 209 (78.6 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 57/207 (27%), Positives = 97/207 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PATNK-KTVSGQQQYPKGTFLVVGTGF 275
+T + T + +G F G GF
Sbjct: 345 FSTPRDNTNNNNNNNRRGGF---GGGF 368
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 207 (77.9 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F G + K+I + T + Y F+EF A L
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLA 65
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 66 AMNGRKIMGKE--VKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAF-APFGRI 122
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 43/173 (24%), Positives = 80/173 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + K D+ +P + T++ G + +
Sbjct: 158 GGQWL--GGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGL 215
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 216 TEQLMRQTF-SPFGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVSVNG 261
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 206 (77.6 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 144 (55.7 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 42/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 157 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 214
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY F+RF A+ +NG
Sbjct: 215 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 260
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 204 (76.9 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 204 (76.9 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 205 (77.2 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 57/174 (32%), Positives = 89/174 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E L F+ G V + K+IR + G + Y FIE+ + A L
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIR--EPGN-DPYAFIEYSNYQAATTALT 63
Query: 142 TFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N E+ ++NWA S G K D + H IFVGDL+ ++ L+E F A +
Sbjct: 64 AMNKRLFL--EKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF-APFGE 120
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++V D T ++KGY FV F ++E A+ MNG + +R +R +T K
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 56/157 (35%), Positives = 84/157 (53%)
Query: 82 RTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
RTLWIGD+ W +ET L+ F G KV R +++GY FIEFI+ A + L
Sbjct: 68 RTLWIGDVPTDWTEET-LSQVFTECGHA-PYKVKRVYVKDELKGYCFIEFITFDEARQTL 125
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG +P G ++ R N F A + + + + V + D+ D L F +Y S
Sbjct: 126 YDLNGNRIP-GFKDIRFNLC-F-ANDSYNPNSEFNLHVSSVPDDMADAELYRIFD-KYQS 181
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
+GAK+ + G +KG GFVRFG++++Q A+ EM+
Sbjct: 182 CRGAKM-FRFVDGSSKGSGFVRFGNQTDQQMALVEMH 217
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 199 (75.1 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 55/178 (30%), Positives = 91/178 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 75 NMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 196 (74.1 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 196 (74.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 196 (74.1 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 5 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 64
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 65 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 122
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 123 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 182 RQIRTNWATRK 192
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 175 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 232
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 233 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 196 (74.1 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNK 254
R +R AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 196 (74.1 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D IF GDL +V D +L F +RYPS AKVV D+ TG+TKGYGFV F D ++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDY 357
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 358 VRAMREMNGRYVGSRPIKL 376
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 47/168 (27%), Positives = 91/168 (54%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ G+ R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPL-YGKP-IRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTFSS-FGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 50/175 (28%), Positives = 89/175 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G +V+ KV + +GQ +GYGF+++ + A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYP 199
NG + N +Q + F ++RD T + T ++V +LA TD L+ F Y
Sbjct: 185 NGMLL-NDKQVYV---GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYG 239
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A V+ D G++KG+GFV F + + RA+ +NG + +G A K
Sbjct: 240 KITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/171 (23%), Positives = 80/171 (46%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-----G- 151
L F G++ + V+++ + G+ +G+GF+ F + A R +++ NG + G
Sbjct: 231 LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 152 -------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
E R+ + E D ++V +L ++D L+E F + + + +
Sbjct: 290 AQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEKLKEIF-SPFGTVTSS 347
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KV+ D G +KG GFV F E AM++++G ++P+ + A K+
Sbjct: 348 KVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 190 (71.9 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 47/129 (36%), Positives = 72/129 (55%)
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQN-FRLN----WASFGAGEKRDDTPDHTIFVGDLAA 183
E I A A LQ+F T ++ R+ W + DD D IF GDL
Sbjct: 150 EAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDD--DFRIFCGDLGN 207
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
DV D +L TF ++PS + A+VV D+ TG++KG+GFV F + ++ +RAM EM+G + +
Sbjct: 208 DVNDEVLTRTFN-KFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGS 266
Query: 244 RPMRIGPAT 252
RP+++ +T
Sbjct: 267 RPIKLRKST 275
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 188 (71.2 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 54/176 (30%), Positives = 91/176 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y +D L F G V +VI N+ T Q G+GF+ + AE+ ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTP---DHT--IFVGDLAADVTDYMLQETFRARY 198
N + NG + +N A+ G + + P D I+VG+L DV L+ F + +
Sbjct: 175 NSFEV-NGRR-LTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEH 230
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV+ +E+E A+ ++G R +++ A +
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 194 (73.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 323 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 381
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 382 VRAMREMNGKYVGSRPIKL 400
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/174 (29%), Positives = 82/174 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+ G+L Y +D L V+V+ N+ TGQ G+ F+ + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPD--HTIFVGDLAADVTDYMLQETFRARYPST 201
+GT + ++N+A K P+ H +FVG+L+ VT L FR
Sbjct: 147 DGTEYLG--RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-ECGDV 203
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
GA+VV D TGR++GYGFV + ++E A+ ++G R +R+ A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 54/175 (30%), Positives = 90/175 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y ++ L F G V +VI N++T Q G+GF+ S AE ++ F
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 144 NGTPMPNGEQNFRLNWAS-FGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYP 199
N + NG +N A+ G+ +R P ++VG+L DV + L++ F + +
Sbjct: 212 NRYDL-NGRL-LTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHG 268
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV D E A++ ++G R +R+ A +
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 194 (73.4 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 355 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 413
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 414 VRAMREMNGKYVGSRPIKL 432
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 46/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 191 GMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQ 240
Score = 100 (40.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 307 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
Score = 94 (38.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 215 NGQKPPAATEPITVKFAN 232
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 374 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 432
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 433 VRAMREMNGKYVGSRPIKL 451
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 381 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 439
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 440 VRAMREMNGKYVGSRPIKL 458
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 196 (74.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/177 (27%), Positives = 93/177 (52%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G + +L++GDL + + ++ L F +VV+V+V R+ T GYG++ + + AE+
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
+Q N + + NG+ R+ ++S + +R + +FV +L V + L E F
Sbjct: 103 AMQKLNYSYL-NGKM-IRITYSSRDSSARRSGVGN--LFVKNLDKSVDNKTLHEAFSG-C 157
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+ KV D + G+++GYGFV+F E A+ ++NG + + + +GP K+
Sbjct: 158 GTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKE 213
Score = 138 (53.6 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 51/187 (27%), Positives = 82/187 (43%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + L T F G + + V+R+ G+ +GF+ F + A R ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 144 NGTPMPN-----G----------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDY 188
NG + G E + R S G K D ++V +L VTD
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGL---NLYVKNLDDTVTDE 342
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+E F A + + KV+ D +G +KG GFV F SE R + EMNG +P+ +
Sbjct: 343 KLRELF-AEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Query: 249 GPATNKK 255
A K+
Sbjct: 401 ALAQRKE 407
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 190 (71.9 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 55 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 112
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 113 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 167
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 168 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 217
Score = 98 (39.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 261 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 320 DEAAMAIASLNGYRLGDRVLQVSFKTNK 347
Score = 89 (36.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 192 NGQK-PSG 198
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 98 (39.6 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 98 (39.6 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 197 (74.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 197 (74.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 42/146 (28%), Positives = 79/146 (54%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNG 188
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 98 (39.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 98 (39.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 98 (39.6 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 98 (39.6 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 73 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 130
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 131 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 185
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 186 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 235
Score = 98 (39.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 292 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 350
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 351 DEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 89 (36.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 210 NGQK-PSG 216
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 61 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 118
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 119 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 173
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 174 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 223
Score = 98 (39.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 294 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 352
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 353 DEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 89 (36.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 198 NGQK-PSG 204
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 177 (67.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 47/167 (28%), Positives = 87/167 (52%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL ++E+ L F+ G V++++V R+ T GY ++ F A AER + T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 93 MNFEAL-HGKP-MRIMWSQRDPAMRRSGAGN--IFIKNLDKVIDNKSIYDTF-SLFGNIL 147
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV ID G +KGYGFV F E A+ ++NG+ + + + +G
Sbjct: 148 SCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 193
Score = 134 (52.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 54/193 (27%), Positives = 87/193 (45%)
Query: 87 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ----- 141
GD ++ ET L FA G + + +V+ + G+ +G+GF+ F + AE +Q
Sbjct: 221 GD--HYNKET-LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDS 275
Query: 142 TFNGTPMP--------NGEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
T GT + E++ L E+ ++V +L V D L++
Sbjct: 276 TIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKK 335
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F + Y + AKV+ D GR+KG+GFV F E A+TEMN ++P+ + A
Sbjct: 336 QFES-YGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 393
Query: 253 NKKTVSGQ--QQY 263
K+ Q QY
Sbjct: 394 RKEDRRAQLASQY 406
Score = 41 (19.5 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 244 RPMRIGPATNKKTVSGQQQYPKGTFLVVG 272
RP GP + QQ P+G +V+G
Sbjct: 538 RPAPTGPKAPPQPYQAYQQRPQG--IVIG 564
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 188 (71.2 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 100 (40.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 265 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 324 LNGYRLGDRVLQVSFKTNK 342
Score = 93 (37.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 187 (70.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 47/162 (29%), Positives = 86/162 (53%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 75 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 127
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
R+ ++V++D+ TG ++G F+RF SE A+T NG
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 94 (38.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 190 (71.9 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 47/177 (26%), Positives = 92/177 (51%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F H G V+ +VI + T + GYG+++F +++ AE+
Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAG-----EKRDDTPDH---TIFVGDLAADVTDYMLQ 191
+Q G + N ++ S AG +K DTP T+F+G+L+ + +
Sbjct: 226 IQEMQGKEIDGRPINCDMS-TSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
E F A++ ++ T + KG+G+V+F + + +A+ + G + RP+R+
Sbjct: 285 ELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
Score = 128 (50.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 166 EKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
+K ++T + TIFVG L+ + D L++ F GA+V+ +R T R++GYG+V F
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++S +A+ EM G RP+ +T+K
Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 189 (71.6 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 100 (40.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 279 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 338 LNGYRLGDRVLQVSFKTNK 356
Score = 93 (37.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 189 (71.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 146 (56.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 186 (70.5 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 41/146 (28%), Positives = 79/146 (54%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L ++T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRNMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 92 (37.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 187 (70.9 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 47/162 (29%), Positives = 86/162 (53%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 42 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 101
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 102 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 154
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
R+ ++V++D+ TG ++G F+RF SE A+T NG
Sbjct: 155 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 94 (38.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 195 NGHKPPGSSEPITVKFAA 212
Score = 90 (36.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 273 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 331
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 332 LNGYRLGDKILQVSFKTNK 350
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 191 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 240
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 241
Score = 93 (37.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 216 NGQKPPGATEPITVKFAN 233
Score = 92 (37.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 308 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 367 LNGYRLGDRVLQVFK-TNK 384
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 241
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 190 (71.9 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F G +V +VI + Q+G+ +GYG+++F + A+
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Query: 140 LQTFNGTPMPNGEQ-NFRLN---------WASFGAGEKRDDT--PDHTIFVGDLAADVTD 187
+ NGT +G N L+ +A AG D P T+FVG+L+ + T+
Sbjct: 321 VAA-NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATE 379
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L F + ++ D +GR KG+G+V F D + + EMNG F + RP R
Sbjct: 380 DDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCR 437
Query: 248 IGPATNKKTVSGQQ 261
+ +T +T G +
Sbjct: 438 LDFST-PRTGGGSR 450
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+D T+FVG L+ +V D L + F Y + GA+V++D +GR+KGYG+V F +
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFE-EYGTIVGARVIMDGQSGRSKGYGYVDF-ETP 314
Query: 228 EQLRAMTEMNG 238
E +A NG
Sbjct: 315 EAAKAAVAANG 325
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 187 (70.9 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 47/170 (27%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N + Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 98 (39.6 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 185 (70.2 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRSMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 92 (37.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + F
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 187 (70.9 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 119 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 251 ATNK 254
AT K
Sbjct: 178 ATRK 181
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 42/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 164 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 221
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY F+RF A+ +NG
Sbjct: 222 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 267
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 187 (70.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 187 (70.9 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 43/173 (24%), Positives = 84/173 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P++ T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 187 (70.9 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWAS---------FGAGEKR---DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ + + K+ D+ +P + T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 191 (72.3 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 53/182 (29%), Positives = 97/182 (53%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + ++ L F G+VV+V+V R+ T + GYG++ + + A R L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ ++ ++ + IF+ +L + L ETF A P
Sbjct: 106 LNFMAL-NGRA-IRVMYSVRDPSLRKSGVGN--IFIKNLDKSIDHKALHETFSAFGPILS 161
Query: 203 GAKVVIDRLTGRTKGYGFVRFG-DESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSG 259
KV +D +G++KGYGFV++ DE+ Q A+ ++NG+ + + + +GP +K + SG
Sbjct: 162 -CKVAVDP-SGQSKGYGFVQYDTDEAAQ-GAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 260 QQ 261
++
Sbjct: 219 EK 220
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 49/184 (26%), Positives = 84/184 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + + LN F G + ++R+ + G+ +G+GF+ F + A R +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 144 NGTPMPN-----------GEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQ 191
NG + E+ L E D + ++V +L VTD L+
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
E F A + + KV+ D +G ++G GFV F E RA+TEMNG T+P+ + A
Sbjct: 345 EHF-APFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 252 TNKK 255
K+
Sbjct: 403 QRKE 406
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 184 (69.8 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 94 (38.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 184 (69.8 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 94 (38.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 184 (69.8 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 39 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 96
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 97 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 151
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 152 GLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 94 (38.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 176 NGHKPPGSSEPITVKFAA 193
Score = 90 (36.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 254 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 312
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 313 LNGYRLGDKILQVSFKTNK 331
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 190 (71.9 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 52/183 (28%), Positives = 98/183 (53%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G++++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D +GR++G+GFV +G+ E +A+TEMNG + R + +G A +
Sbjct: 214 FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 258 SGQ 260
G+
Sbjct: 273 QGE 275
Score = 181 (68.8 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 50/169 (29%), Positives = 83/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGD 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R GYGFV F + RA+ MNG+ + R + +G
Sbjct: 125 ILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Score = 151 (58.2 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 52/189 (27%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEV-NGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + KV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
R + P ++++GDL DVT+ ML E F P +V D T R+ GY ++ F +
Sbjct: 5 RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63
Query: 228 EQLRAMTEMNGVFCSTRPMRI 248
+ RA+ MN RP+RI
Sbjct: 64 DAERALDTMNFEVIKGRPIRI 84
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 184 (69.8 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 45 MSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQS-- 102
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A D D +++ L +T ++E F RY ++V++D+ +
Sbjct: 103 KTIKVSYAR----PSSDSIKDANLYISGLPKTMTQKDVEEMF-GRYGRIINSRVLVDQAS 157
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF +E A+ ++NG
Sbjct: 158 GLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 86 (35.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ +G G FI F RA AE ++
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 182 NGQKPPGAAEQMTVKFAA 199
Score = 86 (35.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 145 GTPMPNGEQNFRLNWASFG--AGEKRDDTPDHT-----IFVGDLAADVTDYMLQETFRAR 197
G P+ + Q FR + S +G + P ++ IF+ +L D + +L + F
Sbjct: 222 GGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMF-GP 280
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + KV+ D T + KG+GFV E A+ +NG + +++ T+K
Sbjct: 281 FGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSK 337
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 187 (70.9 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 79 GEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
GE +T L I L M + + + F GE+ + K++R+K TGQ GYGF+ ++ A
Sbjct: 38 GESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R + +FNG + N + ++++A D ++V + +T + L+ FR
Sbjct: 98 RAVSSFNGLRLQN--KTIKVSYAR----PSNDQIKGSNLYVSGIPKSMTLHELESIFRP- 150
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ ++++ D +TG +KG GFVRF + E A+ +NG
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 105 (42.0 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
AS A DT + +FV +L++D D +L + F +++ + K++ D LT + KGY
Sbjct: 360 ASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLF-SQFGAIVNVKILRD-LTQQCKGYA 417
Query: 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
FV + +E AM +NG + + +++
Sbjct: 418 FVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 82 (33.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ + M L + F G+++ +++ + TG +G GF+ F + A+ ++T
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 144 NGTPMPNG 151
NG+ +P+G
Sbjct: 190 NGS-IPSG 196
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 188 (71.2 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 52/183 (28%), Positives = 97/183 (53%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A +
Sbjct: 214 FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 258 SGQ 260
G+
Sbjct: 273 QGE 275
Score = 180 (68.4 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 49/169 (28%), Positives = 84/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R GYGFV F + RA+ MNG+ + R + +G
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 54/189 (28%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 183 (69.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV V V +++ T + YGFIE+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+N AS +K+ +F+G+L DV + +L +TF A
Sbjct: 86 LNMIKL-HGKP-IRVNKAS---QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
K++ D TG ++G+GF+ + A+ M G + S R + + A K T G++
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDT-KGERH 199
Query: 263 YPKGTFLVVGT 273
L+ T
Sbjct: 200 GTPAERLLAAT 210
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/169 (30%), Positives = 87/169 (51%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R++ T + GY + F AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + G+ R+ W+ ++ + IFV +L + L +TF A + +
Sbjct: 70 DTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDRSIDSKTLYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D G +KGYGFV F + E RA+ +MNG+F + R + +G
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVG 171
Score = 168 (64.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 48/177 (27%), Positives = 90/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEEAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ +L D+ D LQ+ F +R
Sbjct: 156 EKMNGMFL-NDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-SR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 117 (46.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++V +L + D L++ F + + + AKV ++ GR+KG+GFV F E +A+TE
Sbjct: 306 LYVKNLDDGIDDERLRKEF-SPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTE 362
Query: 236 MNGVFCSTRPMRIGPATNKK 255
MNG +T+P+ + A K+
Sbjct: 363 MNGRIVATKPLYVALAQRKE 382
Score = 95 (38.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I +L MD+ L F+ G ++VKV+ + ++G+ +G+GF+ F A +
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKA 247
Query: 140 LQTFNGTPMPNGEQ 153
+ NG + NG+Q
Sbjct: 248 VDEMNGKDL-NGKQ 260
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 188 (71.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 51/186 (27%), Positives = 95/186 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+ GDL + E +L F H VV+V+V R++ + GY +I F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSL-GYAYINFSNPNDAYRAMEA 108
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ ++ R+ ++ + + IF+ +L A + + L ETF + + +
Sbjct: 109 LNYTPL--FDRPIRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSS-FGTIL 163
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV +D +TGR+KGYGFV+F E A+ ++NG+ + + + +G ++ + +
Sbjct: 164 SCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDEN 222
Query: 263 YPKGTF 268
P F
Sbjct: 223 TPTPRF 228
Score = 132 (51.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 43/185 (23%), Positives = 84/185 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + E L F G V++ V+ Q+G +GF+ F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 144 NGTPMPNG-------------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
NG + + E+ R + + + + +++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERIN-RFEKSQGANLYLKNLDDSVDDEKL 348
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+E F + Y + +KV+++ G ++G+GFV + + E LRA++EMNG +P+ I
Sbjct: 349 KEMF-SEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 251 ATNKK 255
A K+
Sbjct: 407 AQRKE 411
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 189 (71.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNG 195
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 189 (71.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNG 195
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 183 (69.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 46/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F +++ +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQFGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N S Q
Sbjct: 192 GVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQ 241
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 43/130 (33%), Positives = 68/130 (52%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 125
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 126 ITTDDIRAAF-APFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 184
Query: 245 PMRIGPATNK 254
+R AT K
Sbjct: 185 QIRTNWATRK 194
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 44/173 (25%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 144 NGTPMPNGEQNFRLNWASF-----------GAGEKRDD------TPDH-TIFVGDLAADV 185
G + G + R NWA+ A + R D +P + T++ G + + +
Sbjct: 177 GGQWL--GGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T++++++TF S G + I R+ KGY F+RF A+ +NG
Sbjct: 235 TEHLMRQTF-----SPFGQIMEI-RVFPE-KGYSFIRFSSHESAAHAIVSVNG 280
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 184 (69.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 54/197 (27%), Positives = 95/197 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L + L M + + + F GEV + K+IR+K TGQ GYGF+ ++ + AE+ +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
NG + N + +++ A + ++V L ++T L+ F + Y
Sbjct: 172 NGLRLQN--KTIKVSIAR----PSSESIKGANLYVSGLPKNMTQSDLESLF-SPYGKIIT 224
Query: 204 AKVVIDRLTGR-----TKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPAT 252
++++ D +TG +KG GF+RF E RA+ E+NG ST P+ + P++
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSS 284
Query: 253 NKKTVSGQQQY--PKGT 267
NK ++ Y P+ T
Sbjct: 285 NKNSMQPLAAYIAPQNT 301
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 183 (69.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 99 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 156
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 157 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 211
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S P+ + A N + Q
Sbjct: 212 GGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQ 261
Score = 98 (39.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 318 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 376
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 377 DEAAMAIASLNGYRLGDRVLQVSFKTNK 404
Score = 89 (36.4 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 236 NGQK-PSG 242
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 178 (67.7 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D +F GDL +V+D +L + FR +YPS + AKVV + T ++KGYGFV F D +
Sbjct: 199 DENDFRVFCGDLGNEVSDELLAKAFR-KYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDY 257
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EM+G + RP+++
Sbjct: 258 VRAMREMDGKYVGNRPIKL 276
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 68
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 69 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 127
Query: 245 PMR 247
+R
Sbjct: 128 QIR 130
Score = 94 (38.1 bits), Expect = 0.00082, P = 0.00082
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 144 NGTPMPNGEQNFRLN 158
G + G + R N
Sbjct: 120 GGQWL--GGRQIRTN 132
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 184 (69.8 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 44/186 (23%), Positives = 91/186 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K Q +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 263 YPKGTF 268
K +
Sbjct: 213 ETKAHY 218
Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 40/174 (22%), Positives = 86/174 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G++++ K+ + + G+ +G+GF+ F A+ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKR-DDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + NG++ + S + + ++T H ++V ++ ++ TD QE F A++
Sbjct: 187 NGMLL-NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF-AKFGP 244
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A + D G+ KG+GFV + + ++A+ +N + + +G A K
Sbjct: 245 IVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Score = 136 (52.9 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 48/174 (27%), Positives = 83/174 (47%)
Query: 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153
DE + FA G +V+ + ++ G+++G+GF+ + A + ++ N + + NGE+
Sbjct: 232 DEQF-QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEK 288
Query: 154 ---------NFRLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N R++ + A EK +FV +L V D L+E F A Y +
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGT 347
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
AKV+ G++KG+GFV F E +A+TE N + +P+ + A K
Sbjct: 348 ITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 47/147 (31%), Positives = 78/147 (53%)
Query: 115 RNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH 174
+++ TGQ +GYGF+EF+S A+ ++ N + G+ R+N AS A K D +
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN 58
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
IF+G+L ++ + +L +TF A + K++ D TG +KGY F+ F A+
Sbjct: 59 -IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQ 261
MNG + RP+ + A KK G++
Sbjct: 118 AMNGQYLCNRPITVSYAF-KKDSKGER 143
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 50/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 49/177 (27%), Positives = 86/177 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y KV+ D G++KG+GFV F + +A+ EMNG + + M +G A K
Sbjct: 214 YGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 52/189 (27%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ F R E K+D + ++V +L +
Sbjct: 248 VDEMNGKDM-NGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 50/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 52/189 (27%), Positives = 93/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++++V+ + + G+ G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV++D GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 89/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y + +V+ D G+++G+GFV F + RA+ EMNG + + + +G A K
Sbjct: 214 YGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 183 (69.5 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 161 (61.7 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 183 (69.5 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 53/189 (28%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + G+ G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+ F R E K+D + ++V +L +
Sbjct: 248 VDDMNGKDL-NGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + S AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 46/177 (25%), Positives = 87/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWF-GQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y + KV+ D G+++G+GFV F + +A+ +MNG + + + +G A K
Sbjct: 214 YGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 50/173 (28%), Positives = 87/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++++V+ + +G+ +G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGE----------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+Q + G + K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLD 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F + AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF-CK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y +V+ D +G++KG+GFV F + RA+ EMNG + + + +G A K
Sbjct: 214 YGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 47/177 (26%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 47/177 (26%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 183 (69.5 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 113 (44.8 bits), Expect = 0.00068, P = 0.00068
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 182 (69.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 50/175 (28%), Positives = 89/175 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G++++++V R+ T + GY +I F A AE L
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + IF+ ++ + + L +TF A + +
Sbjct: 70 DTMNYEVIKG--RPIRIMWSQRDPGLRKSGVGN--IFIKNMDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ MNG+ + R + +G ++K
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK 177
Score = 163 (62.4 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 54/189 (28%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D L F G+ ++V V+ +++ G+ G+GF+ F++ A R
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEL-NGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F A Y + AKV+ D G ++G+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DEKLRKEF-APYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 160 (61.4 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 47/183 (25%), Positives = 90/183 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I ++ +D L F+ G +++ KV+ + + G +GYGF+ F ++ A R +
Sbjct: 98 VGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
+T NG + N + F ++ S E + T +++ + D+ L+ F
Sbjct: 156 ETMNGMLL-NDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIF-TE 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T V+ D GR++G+GFV F + + RA+TEMNG + R + +G A +
Sbjct: 214 FGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Query: 258 SGQ 260
G+
Sbjct: 273 QGE 275
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 176 (67.0 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 39/146 (26%), Positives = 77/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GE+ + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + + ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SPFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 92 (37.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 177 (67.4 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 49/176 (27%), Positives = 87/176 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++IG L T N F GE+ ++R++ TGQ G+GFI F + ++V++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 144 NGTPMPNGEQ-NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
T + NG+Q + G + D IFVG + + VT+ L++ F A+Y +
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF-AKYGNVV 136
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+V+ D T R++G+GFV F E +++ N + + + I A KK+++
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLN 192
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 183 (69.5 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 51/171 (29%), Positives = 89/171 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
++ +L++GDL ++E LN F+ G + ++ V R+ T + GY ++ F + AE
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R L T N T + +G+ R+ W S+ KR T IFV +L V + ML +TF +
Sbjct: 242 RALDTLNYT-LVHGKP-CRIMW-SYRDPTKRK-TNVGNIFVKNLEKGVDNAMLYDTFSS- 296
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
+ + KV ++ G +KGYG+V F +A+ ++NG +P+ +
Sbjct: 297 FGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/163 (22%), Positives = 80/163 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L+ +D L F+ G +++ KV K G +GYG++ F + AE+ +
Sbjct: 273 VGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAI 330
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
+ NGT + G+ +N F + +R ++ +F + +T +LQ+ R+
Sbjct: 331 EKVNGT-LILGKP---INVERFVSKVERYKV-ENKVFFRNADESITIEILQQELSNRFGE 385
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ ++ + G++KG G V F ++ + + +TE + ST
Sbjct: 386 IESC-ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIIST 427
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 181 (68.8 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G +R + IF+ +L + + L +TF + + S
Sbjct: 70 DTMN-FEMIKG-QPIRIMWSHRDPGLRRSGMGN--IFIKNLENSIDNKALYDTF-STFGS 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
+KVV + R G+GFV F +A+ MNG+ + R + +G
Sbjct: 125 ILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVG 171
Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 52/184 (28%), Positives = 88/184 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L+ MDE L F+ G+ +VKV+R+ GQ G+GFI F A++ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 144 NGTPMPN-----GEQNFRLNWAS-----FGA--GEKRDDTPDHTIFVGDLAADVTDYMLQ 191
NG + G R + F E+++ ++V +L + D L+
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
E F + Y AKV+ + + +KG+GFV F E +A+TEMNG T+P+ + A
Sbjct: 312 EVF-STYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 252 TNKK 255
K+
Sbjct: 369 QRKE 372
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D+ +F GDL +V D +L + F AR+P+ AKV+ D+ TG+TKGYGFV F + ++ A
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 233 MTEMNGVFCSTRPMRIGPATNKK 255
+ EMNG + RP+++ ++ K+
Sbjct: 195 LKEMNGKYVGNRPIKLRKSSWKE 217
Score = 108 (43.1 bits), Expect = 0.00051, P = 0.00051
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+ GDL +++ L+ FA KVIR+K+TG+ +GYGF+ F++ A L+
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 144 NGTPMPN 150
NG + N
Sbjct: 199 NGKYVGN 205
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 51/173 (29%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 161 (61.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 177 (67.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 51/179 (28%), Positives = 91/179 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E+ L G VV+V + +++ T +G+GF+EF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ ++N AS A EK D + IFVG+L +V + +L +TF A +
Sbjct: 74 LNMIKL-YGKP-IKVNKAS--AHEKNMDVGAN-IFVGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D +G +KG+ F+ F A+ MNG F R + + A K+ G++
Sbjct: 129 VPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAF-KRDSKGER 186
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 177 (67.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 51/179 (28%), Positives = 91/179 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E+ L G VV+V + +++ T +G+GF+EF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ ++N AS A EK D + IFVG+L +V + +L +TF A +
Sbjct: 74 LNMIKL-YGKP-IKVNKAS--AHEKNMDVGAN-IFVGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D +G +KG+ F+ F A+ MNG F R + + A K+ G++
Sbjct: 129 VPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAF-KRDSKGER 186
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 177 (67.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 46/164 (28%), Positives = 86/164 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151
M + L + F GE+ + K++R+K T GQ GYGF+ +I AE+ + T NG +
Sbjct: 77 MTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT- 135
Query: 152 EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
+ ++++A + RD ++V L +T L++ F ++Y +++++D++
Sbjct: 136 -KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQV 189
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATN 253
TG ++G GF+RF E A+ +NG +T P+ + A N
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 175 (66.7 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMN-FEMLKG-QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D R G+GFV F +A+ MNG+ + R + +G
Sbjct: 125 ILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 137 (53.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 49/185 (26%), Positives = 90/185 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV ++ + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 NTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++ +GFV F E +A+ MNG S R + G A +K V
Sbjct: 214 FGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA--QKRV 270
Query: 258 SGQQQ 262
Q +
Sbjct: 271 ERQNE 275
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 173 (66.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 108 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 163
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 164 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 219
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 220 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 253
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 176 (67.0 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 51/173 (29%), Positives = 90/173 (52%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 71 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K
Sbjct: 126 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRK 176
Score = 167 (63.8 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 49/177 (27%), Positives = 91/177 (51%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 154
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 155 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 212
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A K
Sbjct: 213 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 143 (55.4 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 246
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 247 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 305
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 306 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 247 RIGPA 251
I A
Sbjct: 363 SIALA 367
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 175 (66.7 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 43/147 (29%), Positives = 75/147 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L F G + +++R+ +TG GY F++F S ++R ++ NG + N
Sbjct: 136 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN-- 193
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A G GE DT ++V +L +TD L F +Y S ++ D+LT
Sbjct: 194 KRLKVSYARPG-GESIKDT---NLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLT 248
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV 239
GR +G FVR+ E A++ +N V
Sbjct: 249 GRPRGVAFVRYNKREEAQEAISALNNV 275
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 43/139 (30%), Positives = 71/139 (51%)
Query: 85 WIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144
++G+L + E + F+ G K+I + T + Y F+EF A L N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A + A
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDA 116
Query: 205 KVVIDRLTGRTKGYGFVRF 223
+VV D TG++KGYGFV F
Sbjct: 117 RVVKDMATGKSKGYGFVSF 135
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 176 (67.0 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 51/173 (29%), Positives = 90/173 (52%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 129 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 183
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K
Sbjct: 184 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRK 234
Score = 167 (63.8 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 49/177 (27%), Positives = 91/177 (51%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 212
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 213 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 270
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A K
Sbjct: 271 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
Score = 143 (55.4 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 246 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 304
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 305 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 363
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 364 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
Query: 247 RIGPA 251
I A
Sbjct: 421 SIALA 425
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/167 (26%), Positives = 84/167 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E+ L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 MNFDVI-NGRP-VRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ +NG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVG 162
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 51/173 (29%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY + F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ +R + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRRSGVGN--VFIKNLNKTIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KG+GFV F E RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Score = 163 (62.4 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 54/195 (27%), Positives = 95/195 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ LN F G+V++VKV+ + + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDD------------TPDHTI-------FVGD 180
+ NG + NG+ + G +K+ D T D I +V +
Sbjct: 248 VDEMNGKEL-NGKHIY------VGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D LQ+ F + + + KV+ + GR+KG+GFV F E +A++EMNG
Sbjct: 301 LDDGIDDERLQKEF-SPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
Score = 153 (58.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 47/177 (26%), Positives = 86/177 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +G+GF+ F + AER +
Sbjct: 98 VGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGHGFVHFETEEAAERAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F + S E T + T +++ + + D L F R
Sbjct: 156 EKMNGMLL-NDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLF-GR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ KV+ D G++KG+GFV F + +A+ EMNG + + + +GPA K
Sbjct: 214 FGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK 269
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 73 MN-FDVVKGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 127
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K
Sbjct: 128 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G+ ++VKV+ + TG+ G+GF+ + A +
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKA 248
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NGT + NG+ F R E KR + I ++ +L +
Sbjct: 249 VEEMNGTEL-NGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 307
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 DEKLRKEF-SPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 365 YVALAQRKE 373
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 99 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 156
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 157 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFD-K 214
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T KV+ D TG+++G+GFV + + +A+ EMNG + + + +G A K
Sbjct: 215 YGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL D+T+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 69 ALDTMNFDVVKGKPIRI 85
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 49/169 (28%), Positives = 84/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R G+GFV F +A+T MNG+ + R + +G
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDRKVFVG 171
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRLNWASFGAGE----KRDDTPDH---TIFVGDLAADVTD 187
+ NG + G R+ S K+D + ++V +L + D
Sbjct: 248 VMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 135 (52.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 34/119 (28%), Positives = 62/119 (52%)
Query: 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218
+A +++ + D +FVG+L +V L + F + + + +V+ D++TGR++G+
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGF 134
Query: 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRI--GPATNKKTVSGQQQYPKGTFLVVGTGF 275
GFV SE A + NG RP+R+ GP K+ G + P+ +F G+G+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE-DGFSRGPRSSFGSSGSGY 192
Score = 119 (46.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 35/122 (28%), Positives = 58/122 (47%)
Query: 138 RVLQTFNGTPMPNGEQNF----RLNWAS----FGAGEKRDDTPDHTIFVGDLAADVTDYM 189
R L+ G P P E F R ++ S +G G + ++VG+L+ V D
Sbjct: 160 RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMA 219
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+ F + + A+V+ DR +GR+KG+GFV + E A+ ++G R +R+
Sbjct: 220 LESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Query: 250 PA 251
A
Sbjct: 279 EA 280
Score = 104 (41.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L + +D L F G V V+VI +K TG+ G+GF+ S + E Q F
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 144 NG 145
NG
Sbjct: 153 NG 154
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 176 (67.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 46/189 (24%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+
Sbjct: 165 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLA 224
Query: 140 L----QTFNGTPM-PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ Q + A+ + +R ++VG L ++T+ ML+ F
Sbjct: 225 IGLTGQRVLGVPIIVQASQAEKNRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIF 284
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ +G ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 285 EP-FGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTER 343
Query: 255 KTVSGQQQY 263
S +
Sbjct: 344 SDASSASSF 352
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 48/177 (27%), Positives = 89/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T KV+ D TG++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 YGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
Score = 163 (62.4 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 53/189 (28%), Positives = 93/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A +
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + NG+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKDI-NGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 48/175 (27%), Positives = 89/175 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ + + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPVRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G ++G+GFV F + RA+ MNG+ + R + +G ++K
Sbjct: 125 ILSCKVVCDE-NG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRK 177
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 53/189 (28%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWASFGAGE----KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG + RL S + K++ + ++V +L +
Sbjct: 248 VADMNGKEI-NGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DERLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 169 (64.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IFVGDL DVT+ ML++ F +YP+ AKV+ D++ G+++G+GFV F S+
Sbjct: 196 DPNDFRIFVGDLGNDVTEEMLRQAF-LKYPTFLKAKVIFDKV-GKSRGFGFVSFSSSSDY 253
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+ A MNG + RP+++
Sbjct: 254 ISAFNTMNGKYIGNRPIKL 272
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 176 (67.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 50/185 (27%), Positives = 91/185 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E +L F G V ++V R+ T + Y ++ + + A AER L T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ G+ R+ W+ ++ + +F+ +L + L +TF A + +
Sbjct: 71 LNNTPI-RGKA-CRIMWSQRDPSLRKSGVGN--VFIKNLDKGIDHKALYDTFSA-FGNIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D +KG+GFV + + +A+ ++NG+ + + + +GP + K GQ
Sbjct: 126 SCKVVTDD-GNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKE-RGQPT 183
Query: 263 YPKGT 267
K T
Sbjct: 184 EVKFT 188
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/201 (23%), Positives = 94/201 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + +G+GF+ + ++ A++ +
Sbjct: 97 VGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG M NG++ F + S + + +F +L+ DV L+E + +Y
Sbjct: 156 AKVNGM-MINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ-QYGE 213
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSG 259
++ D G++KG+GF F + +E + + E NG +P+ G A +K +
Sbjct: 214 ITNITIMADD-KGKSKGFGFANF-ESAEAAKNVVENENGKIFHGKPIYAGRA--QKKIER 269
Query: 260 QQQYPKGTFLVVGTGFCLQIK 280
+ + K TF G L IK
Sbjct: 270 EAEL-KHTFETKYQGVNLYIK 289
Score = 129 (50.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 37/154 (24%), Positives = 74/154 (48%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT-----FNGTPMPNGEQNFRLNWA 160
GE+ + ++ + + G+ +G+GF F S A+ V++ F+G P+ G ++
Sbjct: 212 GEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIERE 270
Query: 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
+ +++ ++ + + L+E F +++ + A V+ D +KG+GF
Sbjct: 271 AELKHTFETKYQGVNLYIKNIDDSIDNDKLREVF-SQFGTITSAIVMKDDKATTSKGFGF 329
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
V + E RA+TEMNG T+P+ + A K
Sbjct: 330 VCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 39/146 (26%), Positives = 75/146 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSFAR----PSSETIKDANLYISGLPRTMTQKDVEDMFLP-FGHIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+ NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 90 (36.7 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 87 (35.7 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVSFKTSK 323
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 176 (67.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 158 (60.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 150 (57.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 171 (65.3 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 42/171 (24%), Positives = 88/171 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ ++ A++ + T NG +
Sbjct: 49 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT-- 106
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 107 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKDMEQLF-SQYGRIITSRILVDQVT 161
Query: 213 -GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF +E A+ +NG + P+ + A N +GQ
Sbjct: 162 AGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 176 (67.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 54/157 (34%), Positives = 78/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N+Q G+ +GY FIEF S A+
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKE 538
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 539 ALNSCNKMEIEGRTIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFEG-- 594
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 595 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 628
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMN-FEMLKG-QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D R G+GFV F +A+ MNG+ + R + +G
Sbjct: 125 ILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 49/188 (26%), Positives = 88/188 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G +GF+ F A++
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 DKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 152 (58.6 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 45/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 48/169 (28%), Positives = 83/169 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R G+GFV F A++ MNG+ + R + +G
Sbjct: 125 ILSCKVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDRKVFVG 171
Score = 164 (62.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P+H +FVG+L DV D L + F + YPS KVV DR G+T+G+GFV F D + L
Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFL 84
Query: 231 RAMTEMNGVFCSTRPMRIGPATN 253
+A E NG + +RP+++ AT+
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATS 107
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 165 (63.1 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 22 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 80
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 81 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 139
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 140 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 196
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 197 YVALAQRKE 205
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 151 (58.2 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 45/177 (25%), Positives = 89/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/177 (25%), Positives = 89/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 175 (66.7 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 152 (58.6 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 149 (57.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 45/177 (25%), Positives = 88/177 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 175 (66.7 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 153 (58.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 47/188 (25%), Positives = 92/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 147 (56.8 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 44/177 (24%), Positives = 89/177 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ T KV+ D +G++KG+GFV + + +A+ EMNG + + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 170 (64.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 52/179 (29%), Positives = 90/179 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T++IG+L + ++ + G +V V + +++ T +GYGF+EF S AE +
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
NG + G+ R+N AS A +++ +FVG+L VT+ +L +TF +R+ +
Sbjct: 74 MNGIRL-YGKP-IRVNKAS--ADKQKSVEIGAELFVGNLDPMVTEQVLYDTF-SRFGNLV 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
V + +KGYGFV F D A+ MNG + + + + A KK G++
Sbjct: 129 NLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAY-KKDGKGER 186
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 157 (60.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 43/186 (23%), Positives = 87/186 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L ++E L F+ G+V +++V R+ + + GY ++ + E+ ++
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ W+ +R D IF+ +L + + L +TF A +
Sbjct: 113 LNYNPIEG--RPCRIMWSQRDPSARRSG--DGNIFIKNLHPAIDNKALHDTFSA-FGKIL 167
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G++K +GFV + A+ +NG+ + R + +G +KK + +
Sbjct: 168 SCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 263 YPKGTF 268
K F
Sbjct: 227 EMKANF 232
Score = 135 (52.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 47/180 (26%), Positives = 86/180 (47%)
Query: 88 DLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147
DL Y +E++ F+ G++ ++ + Q G+ +G+GF+ F A + ++ N
Sbjct: 241 DLNY-SEESF-EKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 148 MPNGEQNF---------RLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ NG++ + RL + A EK +FV +L + L+E F
Sbjct: 298 I-NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEF 356
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + + AKV++D G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 357 KP-FGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Score = 124 (48.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/175 (21%), Positives = 87/175 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G++++ KV + + GQ + +GF+ + + AE ++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + E + + K ++ + I+V ++ + ++ ++ F P
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFS---PFG 257
Query: 202 KGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
K + +++ G++KG+GFV F D ++A+ E+N + + + +G A K+
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312
Score = 41 (19.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 250 PATNKKTVSGQQQYPKGTFLVVGTG 274
P +K + G++ YPK +V TG
Sbjct: 549 PQDQQKRILGEELYPK----IVATG 569
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 170 (64.9 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 93 (37.8 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G G R IFV +L+ + + +L + F + + KV+ D T + KG+GFV
Sbjct: 273 GVGPVRGCGGGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVT 331
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+ E A+ +NG R +++ T+K+
Sbjct: 332 MTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 170 (64.9 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 91 (37.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 170 (64.9 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 91 (37.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 170 (64.9 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 91 (37.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 287 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 345
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 346 LNGYRLGERVLQVSFKTSKQ 365
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 162
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 173 (66.0 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 47/189 (24%), Positives = 90/189 (47%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RT+++ L + L F G V ++++++ +G+ +G G++EF + +Q
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ 233
Query: 142 TFN----GTP----MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
G P + E+N + + +G K P H ++VG++ + + LQ
Sbjct: 234 LTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHS-APFHRLYVGNIHFSIDENDLQSV 292
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F + + ++ D TGR++GYGFV+F D ++ A+ +MNG R +R+G +
Sbjct: 293 FEP-FGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGND 350
Query: 254 KKTVSGQQQ 262
K T Q+
Sbjct: 351 KFTPENTQR 359
>UNIPROTKB|Q86SG3 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 EMBL:AC006338 UniGene:Hs.522868
UniGene:Hs.70936 MIM:400003 MIM:415000 Orphanet:1646
HOVERGEN:HBG048860 GermOnline:ENSG00000188120 EMBL:AF248482
EMBL:AF248483 EMBL:BC047480 EMBL:BC047617 IPI:IPI00160336
IPI:IPI00401506 RefSeq:NP_001005375.1 RefSeq:NP_065153.1
ProteinModelPortal:Q86SG3 SMR:Q86SG3 STRING:Q86SG3
PhosphoSite:Q86SG3 DMDM:44887840 PRIDE:Q86SG3
Ensembl:ENST00000440066 Ensembl:ENST00000449750 GeneID:57135
KEGG:hsa:57135 UCSC:uc004fvm.3 UCSC:uc004fvn.3 CTD:57135
GeneCards:GC0YP026979 HGNC:HGNC:15966 neXtProt:NX_Q86SG3
PharmGKB:PA27152 InParanoid:Q86SG3 ChiTaRS:DAZ4 GenomeRNAi:57135
NextBio:63055 ArrayExpress:Q86SG3 Bgee:Q86SG3 CleanEx:HS_DAZ4
Genevestigator:Q86SG3 Uniprot:Q86SG3
Length = 579
Score = 120 (47.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 100 QIHFHGKKLKLG 111
Score = 120 (47.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 265 QIHFHGKKLKLG 276
Score = 109 (43.4 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
+ + +++GPA K+ + + P+
Sbjct: 263 GSQ--IHFHGKKLKLGPAIRKQKLCARHVQPR 292
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P H +FVG+L D D +L+E F ++YPS V IDR T + KG+GFV FG + L
Sbjct: 53 PKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYL 111
Query: 231 RAMTEMNGVFCSTRPMRIGPATN---KKT 256
A EMNG + P+++ A + KKT
Sbjct: 112 HAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P H +FVG+L D D +L+E F ++YPS V IDR T + KG+GFV FG + L
Sbjct: 53 PKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYL 111
Query: 231 RAMTEMNGVFCSTRPMRIGPATN---KKT 256
A EMNG + P+++ A + KKT
Sbjct: 112 HAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 120 (47.3 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 265 QIHFHGKKLKLG 276
Score = 120 (47.3 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 100 QIHFHGKKLKLG 111
Score = 120 (47.3 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 430 QIHFHGKKLKLG 441
Score = 109 (43.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 427
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
+ + +++GPA K+ + + P+
Sbjct: 428 GSQ--IHFHGKKLKLGPAIRKQKLCARHVQPR 457
Score = 109 (43.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
+ + +++GPA K+ + + P+
Sbjct: 263 GSQ--IHFHGKKLKLGPAIRKQKLCARHVQPR 292
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + Y +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R GYGFV F RA+ MNG+ + R + +G
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG 171
Score = 151 (58.2 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 51/189 (26%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWAS-----FGA--GEKRDDTPDHTIFVGDLAADVT 186
+ NG + NG + R+ S F E+ + ++V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 169 (64.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 51/178 (28%), Positives = 88/178 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L++ F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T+ KV+ D TG++KG+GFVR+ +A+ E++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKK 277
Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQPDDHLRKSGVGN--IFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D G +KGY +V F + RA+ MNGV + R + +G
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Score = 137 (53.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER-VLQ----TFNGTP 147
+D+ L F+ G +VKVIR+ TG+ +G+GF+ + + A++ VL+ + +G
Sbjct: 210 IDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKV 268
Query: 148 MPNGEQNFRLNWAS-----FGAGEKRDDT--PDHTIFVGDLAADVTDYMLQETFRARYPS 200
+ G ++ + F + +D T P I++ +L + D L+E F + + S
Sbjct: 269 LCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEF-SLFGS 327
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRPMRIGPATNK 254
AKV+++ G+ KG+G V F E +A+ EMNG V T + +G A ++
Sbjct: 328 ISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQARHR 381
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 167 (63.8 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 39/146 (26%), Positives = 74/146 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ +++ A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSVAR----PSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGRIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+ NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 90 (36.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 84 (34.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVFFKTSK 323
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 170 (64.9 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + L + F GEV KVIR+ QT + +GYGF+ F ++ AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 144 NGTPMPNGEQNFRLNWASF-GAGEKRDDTP----------DHT-IFVGDLAADVTDYMLQ 191
NG + G++ R NWA+ + E RD D+T ++VG+++ TD L+
Sbjct: 287 NGKWI--GKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ F ST G + R+ +T+ Y FVR+ + +A+ EMNG
Sbjct: 345 DLF-----STYGDIAEV-RIF-KTQRYAFVRYEKKECATKAIMEMNG 384
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 157 LNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215
L+ AS E R DT H +FVGDL+ DV++ +L+ TF ++ AKV+ D T ++
Sbjct: 207 LHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKS 265
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
KGYGFV F ++ A+ MNG + R +R A K +
Sbjct: 266 KGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNS 306
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 538
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 539 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 594
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 595 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 628
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 484 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 539
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 540 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 595
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 596 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 629
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 485 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 540
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 541 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 596
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 597 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 630
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 488 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 543
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 544 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 599
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 600 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 633
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 398 GESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKE 453
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 454 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 509
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 510 -SIR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 543
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 51/198 (25%), Positives = 90/198 (45%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RTL +L Y + + L F + V ++++ + G+ +G +IEF + A AE+
Sbjct: 313 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV--SKDGKSKGIAYIEFKTEADAEKT 367
Query: 140 LQTFNGTPMP-NGE----QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
L+ GT + GE Q+ R S +GE + T+ + +L+ T+ LQE F
Sbjct: 368 LEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESK------TLVLSNLSYSATEETLQEVF 421
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+T KV ++ G++KGY F+ F + A+ N R +R+ +
Sbjct: 422 EK---ATH-IKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 476
Query: 255 KTVSGQQQYPKGTFLVVG 272
+ + + Q P T V G
Sbjct: 477 GSPNARSQ-PSKTLFVKG 493
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 403 GESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKE 458
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 514
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 515 -SIR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 548
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 51/198 (25%), Positives = 90/198 (45%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RTL +L Y + + L F + V ++++ + G+ +G +IEF + A AE+
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV--SKDGKSKGIAYIEFKTEADAEKT 372
Query: 140 LQTFNGTPMP-NGE----QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
L+ GT + GE Q+ R S +GE + T+ + +L+ T+ LQE F
Sbjct: 373 LEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESK------TLVLSNLSYSATEETLQEVF 426
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+T KV ++ G++KGY F+ F + A+ N R +R+ +
Sbjct: 427 EK---ATH-IKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 481
Query: 255 KTVSGQQQYPKGTFLVVG 272
+ + + Q P T V G
Sbjct: 482 GSPNARSQ-PSKTLFVKG 498
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 403 GESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKE 458
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 514
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 515 -SIR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 548
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 51/198 (25%), Positives = 90/198 (45%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RTL +L Y + + L F + V ++++ + G+ +G +IEF + A AE+
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV--SKDGKSKGIAYIEFKTEADAEKT 372
Query: 140 LQTFNGTPMP-NGE----QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
L+ GT + GE Q+ R S +GE + T+ + +L+ T+ LQE F
Sbjct: 373 LEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESK------TLVLSNLSYSATEETLQEVF 426
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+T KV ++ G++KGY F+ F + A+ N R +R+ +
Sbjct: 427 EK---ATH-IKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 481
Query: 255 KTVSGQQQYPKGTFLVVG 272
+ + + Q P T V G
Sbjct: 482 GSPNARSQ-PSKTLFVKG 498
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 168 (64.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 50/178 (28%), Positives = 88/178 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV ++ D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-C 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D G +KGY +V F + RA+ MNGV + R + +G
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-- 150
+D+ L F G +VKVIR+ +G+ +G+GF+ + + A++ + +G +
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268
Query: 151 ---GEQN--------FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
G R + EK P I++ +L + D L+E F + +
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEK-SRPPGVPIYIKNLDETINDEKLKEEFSS-FG 326
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
S AKV+++ G+ KG+G V F E +A+ EMNG ++P+ +
Sbjct: 327 SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 167 (63.8 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 53/157 (33%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 137 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKE 192
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ + T+ L+E+F
Sbjct: 193 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEETTEETLKESFDG-- 248
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 249 -SIR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 282
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 53/206 (25%), Positives = 92/206 (44%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RTL +L Y + + L F + V ++++ + G+ +G +IEF + A AE+
Sbjct: 45 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV--SKDGKSKGIAYIEFKTEADAEKT 99
Query: 140 LQTFNGTPMPN--------GE----QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
L+ GT + GE Q+FR S +GE + T+ + +LA T+
Sbjct: 100 LEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK------TLVLSNLAYSATE 153
Query: 188 YMLQETF-RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
LQE F +A + KV ++ G++KGY F+ F + A+ N R +
Sbjct: 154 ETLQEVFEKATF-----IKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 207
Query: 247 RIGPATNKKTVSGQQQYPKGTFLVVG 272
R+ + + + + Q P T V G
Sbjct: 208 RLELQGPRGSPNARSQ-PSKTLFVKG 232
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 167 (63.8 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 91 (37.1 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 167 (63.8 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 41/170 (24%), Positives = 85/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG + P+ + A N +GQ
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 91 (37.1 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 167 (63.8 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 44/179 (24%), Positives = 87/179 (48%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIE--------GYGFIEFISRAGAERVLQTFN 144
M + L + F+ GEV + K+IR+K G GYGF+ +++ + AER + T N
Sbjct: 67 MSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLN 126
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + + + ++++A D D +++ L +T +++ F +Y +
Sbjct: 127 GLRLQS--KTIKVSYAR----PSSDGIKDANLYISGLPKTMTQKNVEDMF-TQYGRIINS 179
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQQ 261
++++D+ +G ++G F+RF SE A+ ++NG S + P+ + A N Q
Sbjct: 180 RILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQ 238
Score = 84 (34.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L D + +L + F + + KV+ D T + KG+GFV + E A++
Sbjct: 288 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISS 346
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ ++K
Sbjct: 347 LNGYRLGDKVLQVSFKSSK 365
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +++ ++ +G G FI F R+ AE ++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 144 NGTPMPNG 151
NG+ P+G
Sbjct: 212 NGSK-PSG 218
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 171 (65.3 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 51/188 (27%), Positives = 89/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F A Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-APYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 47/169 (27%), Positives = 82/169 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + +F+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--VFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D R G+GFV F A+ MNG+ + R + +G
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVG 171
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 172 (65.6 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/157 (34%), Positives = 77/157 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N Q G+ +GY FIEF S A+
Sbjct: 493 GESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKE 548
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 549 ALNSCNKREIEGRAIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFDG-- 604
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 605 -SIR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 638
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 120 (47.3 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 265 QIHFHGKKLKLG 276
Score = 120 (47.3 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 100 QIHFHGKKLKLG 111
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 430 QIHFHGKKLKLG 441
Score = 109 (43.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 427
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
+ + +++GPA K+ + + P+
Sbjct: 428 GSQ--IHFHGKKLKLGPAIRKQKLCARHVQPR 457
Score = 109 (43.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
+ + +++GPA K+ + + P+
Sbjct: 263 GSQ--IHFHGKKLKLGPAIRKQKLCARHVQPR 292
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 48/183 (26%), Positives = 94/183 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L FA + +V++ ++ +G+ YG+ F+SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + NG+ R+ W+ +R+ + +FV +L VT+ +LQ+ F+ ++ +
Sbjct: 85 KNNSLL-NGKM-IRVMWSVRAPDARRNGVGN--VFVKNLPESVTNAVLQDMFK-KFGNIV 139
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT--VSGQ 260
KV G+++GYGFV+F E A+ +N + + + +G KKT V +
Sbjct: 140 SCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM-KKTDRVKPE 197
Query: 261 QQY 263
++Y
Sbjct: 198 EKY 200
Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
Identities = 47/197 (23%), Positives = 87/197 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ +L + E L FA G++V++ + +++ GY F+ F + A R +T
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 144 NGTPMPNGEQNFRLNWASFGAG----------EKRDD----TPDHTIFVGDLAADVTDYM 189
NGT G + + A A EK ++ I+V ++ VT+
Sbjct: 262 NGTKF--GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L++ F ++ + K++ D G++KG+GFV F E + A+ +G +P+ +
Sbjct: 320 LRKHF-SQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
Query: 250 PATNKKTVSGQQQYPKG 266
A K+ Q Q G
Sbjct: 378 IAQKKEDRKMQLQVQFG 394
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 166 (63.5 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 50/178 (28%), Positives = 87/178 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGE--KRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E RD +FV + D+ D L+E F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 149 (57.5 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 51/166 (30%), Positives = 78/166 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + S
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSA-FGSILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D G +KGY +V F + RA+ MNGV + R + +G
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Score = 139 (54.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 43/169 (25%), Positives = 80/169 (47%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-- 150
MD+ L F+ G +VKVIR+ +G+ +G+GF+ + + A++ + +G +
Sbjct: 210 MDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268
Query: 151 ---GEQN--------FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
G R + EK P I++ +L + D L+E F + +
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEK-SRPPGVPIYIKNLDETIDDEKLKEEFSS-FG 326
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
S AKV+++ G+ KG+G + F E +A+ EMNG ++P+++
Sbjct: 327 SISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQV 373
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 169 (64.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 52/158 (32%), Positives = 75/158 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N G+ +GY FIEF S A+
Sbjct: 340 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKE 395
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 396 ALNSCNKMEIEGRTIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFEG-- 451
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236
S + A++V DR TG +KG+GFV F E + A M
Sbjct: 452 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 487
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 170 (64.9 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 48/167 (28%), Positives = 83/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+IGDL + E L F+ G V++++V R+ + GY ++ F A AER L T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 118 MNFEVI-HGRP-MRIMWSQRDPAARR--AGNGNIFIKNLDRVIDNKSVYDTF-SLFGNIL 172
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G +KGYGFV F E A+ ++NG+ S + + +G
Sbjct: 173 SCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG 218
Score = 140 (54.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 46/187 (24%), Positives = 89/187 (47%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
+D+ L+ F+ GE+ + V+ + Q G+ +G+GF+ F + A + ++ N + + +
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTD 307
Query: 153 QNF---RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVTDYMLQETFRARY 198
R S + E K++ + ++V ++ D+ D L++ F + +
Sbjct: 308 CKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS-F 366
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+ AKV++D GR+KG+GFV F E A+T+MN +P+ + A K+
Sbjct: 367 GTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425
Query: 259 GQ--QQY 263
Q QY
Sbjct: 426 AQLASQY 432
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 42/171 (24%), Positives = 83/171 (48%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL----QTFNGTPMPNGEQ 153
L F+ G+V V++I ++ + + +G ++EF+ + + Q G P+
Sbjct: 12 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 71
Query: 154 NFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
N A+ A ++ ++VG L ++T+ ML+ F + + ++++D T
Sbjct: 72 QAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSET 130
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263
GR+KGYGF+ F D +A+ ++NG + RPM++G T + S +
Sbjct: 131 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 181
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 160 (61.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 47/176 (26%), Positives = 82/176 (46%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL----QTFNGTPM-PNGE 152
L F+ G+V V++I ++ + + +G ++EF + Q G P+
Sbjct: 12 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 71
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI--DR 210
Q + A+ ++ + ++VG L ++T+ ML+ F P K +V+ D
Sbjct: 72 QAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFE---PFGKIDNIVLMKDS 128
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKG 266
TGR+KGYGF+ F D RA+ ++NG + RPMR+G T + +P G
Sbjct: 129 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDG 184
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 53/157 (33%), Positives = 76/157 (48%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N G+ +GY FIEF S A+
Sbjct: 486 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKE 541
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 542 ALNSCNKMEIEGRTIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFEG-- 597
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 598 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 631
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 53/157 (33%), Positives = 76/157 (48%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE +TL + +L Y E L F + +KV +N G+ +GY FIEF S A+
Sbjct: 487 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKE 542
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L + N + L G+ R P T+FV L+ D T+ L+E+F
Sbjct: 543 ALNSCNKMEIEGRTIRLELQGPR-GSPNARSQ-PSKTLFVKGLSEDTTEETLKESFEG-- 598
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
S + A++V DR TG +KG+GFV F E E +A E
Sbjct: 599 -SVR-ARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 632
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 41/116 (35%), Positives = 66/116 (56%)
Query: 150 NGEQNFRLNWASFGAGEK-RDDT-----PDHT-IFVGDLAADVTDYMLQETFRARYPSTK 202
NG++ + + + G G+K DDT P H +FVG+LA + TD L + F +R+ S +
Sbjct: 240 NGDERKKTVYRT-GGGKKWADDTLVEWDPTHLRLFVGNLAGETTDESLLKAF-SRWKSVQ 297
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+KV+ D+ T ++KGYGFV F D + +A EMNG + + P+ A + V+
Sbjct: 298 KSKVIRDKRTNKSKGYGFVSFSDPDDFFQAAKEMNGKYIQSHPVTCRKANTEIKVT 353
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 169 (64.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 46/186 (24%), Positives = 88/186 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G R+ W+ ++ T +F+ +L + + L +TF A + +
Sbjct: 122 LNYT-LIKGRP-CRIMWSQRDPALRK--TGQGNVFIKNLDVAIDNKALHDTFAA-FGNIL 176
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + + +A+ +NG+ + + + +G KK +
Sbjct: 177 SCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 263 YPKGTF 268
K F
Sbjct: 236 EMKANF 241
Score = 141 (54.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 40/173 (23%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + + K D+ + I+V ++ +VTD + F +Y
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KYGDV 268
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + D+ TG+++G+GFV F + +A+ E+N + + +G A K
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK 321
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 50/178 (28%), Positives = 88/178 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSG 221
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + + +G A K
Sbjct: 222 -YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKK 277
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KVV D G +KGY +V F + RA+ MNGV + R + +G
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Score = 136 (52.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 44/169 (26%), Positives = 81/169 (47%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL-----QTFNGTP 147
MD+ L F+ G +VKVIR+ +G+ +G+GF+ + + A++ + ++ NG
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKV 268
Query: 148 MPNGEQN--------FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
+ G R + EK P I++ +L + D L+E F + +
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEK-SRPPGVPIYIKNLDETIDDEKLKEEFSS-FG 326
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
S AKV+++ G+ KG+G V F + +A+ EMNG ++P+ +
Sbjct: 327 SISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHV 373
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/184 (24%), Positives = 87/184 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G +IEF+
Sbjct: 147 DARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLA 206
Query: 140 L----QTFNGTPM-PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ Q + A+ ++ ++VG L ++T+ ML+ F
Sbjct: 207 IGLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 266
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 267 EP-FGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTER 325
Query: 255 KTVS 258
S
Sbjct: 326 TDAS 329
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ RT++ L + L F+ G+V V++I ++ + + +G ++EF+ +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 140 L----QTFNGTPMPNGEQNFRLNWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ Q G P+ N A+ A ++ ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + ++++D TGR+KGYGF+ F D +A+ ++NG + RPM++G T +
Sbjct: 271 EP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Query: 255 KTVSGQQQY 263
S +
Sbjct: 330 TDASSASSF 338
WARNING: HSPs involving 562 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 305 213 0.00084 112 3 11 22 0.50 32
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 812
No. of states in DFA: 606 (64 KB)
Total size of DFA: 177 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.59u 0.18s 18.77t Elapsed: 00:00:01
Total cpu time: 18.64u 0.18s 18.82t Elapsed: 00:00:02
Start: Tue May 21 00:36:49 2013 End: Tue May 21 00:36:51 2013
WARNINGS ISSUED: 2