BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021950
         (305 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
           GN=RBP45B PE=1 SV=1
          Length = 405

 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/265 (65%), Positives = 191/265 (72%), Gaps = 26/265 (9%)

Query: 1   MMQPAPGAVPP--PPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWAT 58
           M QP PG + P   PPP A  QY YQQ        PP                PP MW  
Sbjct: 2   MQQPPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPP----------------PPQMWNP 45

Query: 59  QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
           QAAAP       P  Q     EIRTLWIGDLQYWMDE +L  CFAHTGE+V+ KVIRNKQ
Sbjct: 46  QAAAP-------PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQ 98

Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDHTIF 177
           TGQ+EGYGFIEF S A AERVLQTFN  P+P+  +Q FRLNWAS  +G+KRDD+PD+TIF
Sbjct: 99  TGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIF 158

Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
           VGDLAADVTDY+L ETFRA YPS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMN
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218

Query: 238 GVFCSTRPMRIGPATNKKTVSGQQQ 262
           GV CSTRPMRIGPA +KK V+GQ+ 
Sbjct: 219 GVPCSTRPMRIGPAASKKGVTGQRD 243



 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 83  TLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           T+++GDL   + D   L T  A    V   KV+ ++ TG+ +GYGF+ F   +   R + 
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215

Query: 142 TFNGTPMP------------NGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDY 188
             NG P               G    R ++ S  AG   D+ P++T +FVG L A VTD 
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275

Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
            L+  F     S  G  V +    G  K  GFV+F ++S    A+  +NGV      +R+
Sbjct: 276 HLKNVF-----SQYGEIVHVKIPAG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328



 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + + +L   F+  GE+V VK+   K+       GF++F  ++ AE  L+ 
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEALRM 315

Query: 143 FNGTPMPNGEQNFRLNWA 160
            NG  +  G    RL+W 
Sbjct: 316 LNGVQL--GGTTVRLSWG 331


>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
           GN=RBP45 PE=1 SV=1
          Length = 409

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 168/205 (81%), Gaps = 3/205 (1%)

Query: 56  WATQAAAPQAAGVAVP---PQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
           WA Q +  Q   +A     P   G P E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ K
Sbjct: 55  WAQQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAK 114

Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
           VIRNKQTGQ EGYGF+EF S A AE +LQT+NGT MPN EQNFR+NWAS GAGE+RDD+ 
Sbjct: 115 VIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA 174

Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
           +HTIFVGDLAADVTDY+LQETF++ Y S +GAKVV DR+TGR+KGYGFV+F DESEQLRA
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234

Query: 233 MTEMNGVFCSTRPMRIGPATNKKTV 257
           MTEMNGV CSTRPMRIGPA NKK V
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPV 259



 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 53  PAMWATQAAAPQAAGVAVPPQQQGQPG-EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111
           PA        PQ A    P   QG+      T+++G L   + E +L   F+  GE+V V
Sbjct: 252 PAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHV 311

Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT 171
           K++  K+       GF++F +RA AE+ L + NGT +  G Q+ RL+W    + ++ D T
Sbjct: 312 KIVAGKRC------GFVQFGTRASAEQALSSLNGTQL--GGQSIRLSWGRSPSSKQTDQT 363



 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 21/181 (11%)

Query: 82  RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
            T+++GDL   + +  L   F      V   KV+ ++ TG+ +GYGF++F   +   R +
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235

Query: 141 QTFNGT-----PMPNGEQNFR--------LNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
              NG      PM  G    +          + +  A +   D  + TIFVG L   V +
Sbjct: 236 TEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAE 295

Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
             L++ F     S  G  V +  + G  K  GFV+FG  +   +A++ +NG     + +R
Sbjct: 296 EHLRQVF-----SPYGELVHVKIVAG--KRCGFVQFGTRASAEQALSSLNGTQLGGQSIR 348

Query: 248 I 248
           +
Sbjct: 349 L 349


>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
           GN=RBP47B' PE=2 SV=1
          Length = 425

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 151/184 (82%)

Query: 80  EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER 
Sbjct: 22  EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81

Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
           LQT+NGT MP  E  FRLNWASFG+G+K D  PDH+IFVGDLA DVTDY+LQETFR  Y 
Sbjct: 82  LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
           S +GAKVV D  TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI  AT KK V  
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201

Query: 260 QQQY 263
           QQQY
Sbjct: 202 QQQY 205



 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 36/209 (17%)

Query: 74  QQGQPGEIRTLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQTGQIEGYGFIEFIS 132
           Q+   G   ++++GDL   + +  L   F  H   V   KV+ +  TG+ +GYGF++F  
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167

Query: 133 RAGAERVLQTFNG-------------TPMPN-GEQNFRLNWASF--------------GA 164
            +   R +   NG             TP  N G Q   +  A +                
Sbjct: 168 ESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYV 227

Query: 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
                D    TI V +L  +VT+  L++ F      ++  +V+  ++   TKGYG+V+F 
Sbjct: 228 APPESDVTCTTISVANLDQNVTEEELKKAF------SQLGEVIYVKIPA-TKGYGYVQFK 280

Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATN 253
                  A+  M G     + +RI  + N
Sbjct: 281 TRPSAEEAVQRMQGQVIGQQAVRISWSKN 309


>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
           GN=RBP45C PE=2 SV=1
          Length = 415

 Score =  274 bits (700), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 154/215 (71%), Gaps = 6/215 (2%)

Query: 52  PPAMWATQAAAPQAAGVAVPPQQQ-----GQPGEIRTLWIGDLQYWMDETYLNTCFAHTG 106
           PPA W  Q+A                   G  GEIR+LWIGDLQ WMDE YL   F  TG
Sbjct: 45  PPAGWNQQSAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTG 104

Query: 107 EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGE 166
           E  A KVIRNKQ G  EGYGFIEF++ A AER LQT+NG PMP+ EQ FRLNWA  GAGE
Sbjct: 105 EATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGE 164

Query: 167 KRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
           +R  + P+HT+FVGDLA DVTD+ML ETF+A Y S KGAKVV DR TGR+KGYGFVRF D
Sbjct: 165 RRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224

Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
           ESEQ+RAMTEMNG +CS+RPMR GPA NKK ++ Q
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ 259



 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 75  QGQPGEIR----TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
           QG  GE      T+++G +   + E  L + F   GE+V VK+   K+ G      F+++
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQY 320

Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160
            +RA AE+ L   NGT +  G Q+ RL+W 
Sbjct: 321 ANRACAEQALSVLNGTQL--GGQSIRLSWG 348


>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
           GN=RBP45A PE=2 SV=1
          Length = 387

 Score =  274 bits (700), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 150/191 (78%), Gaps = 2/191 (1%)

Query: 69  AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
            +  Q  G   ++++LWIGDLQ WMDE Y+ + FA +GE  + KVIRNK TGQ EGYGFI
Sbjct: 47  GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106

Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVT 186
           EF+S + AERVLQT+NG PMP+ EQ FRLNWA  GAGEKR  T  PDHTIFVGDLA +VT
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166

Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
           DYML +TF+  Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPM
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226

Query: 247 RIGPATNKKTV 257
           RIGPA NK  +
Sbjct: 227 RIGPAANKNAL 237



 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 21/204 (10%)

Query: 79  GEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
           G   T+++GDL   + +  L+  F +  G V   KV+ ++ TG+ +GYGF+ F       
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210

Query: 138 RVLQTFNG-----TPM---PNGEQNF-----RLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
           R +   NG      PM   P   +N       +   + GA    +D  + TIFVG L A+
Sbjct: 211 RAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270

Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
           VTD  L+  F  ++      K+   +        GFV++ +++    A++ +NG     +
Sbjct: 271 VTDDELKSIF-GQFGELLHVKIPPGKRC------GFVQYANKASAEHALSVLNGTQLGGQ 323

Query: 245 PMRIGPATNKKTVSGQQQYPKGTF 268
            +R+    +    S Q Q+  G +
Sbjct: 324 SIRLSWGRSPNKQSDQAQWNGGGY 347


>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
           GN=RBP47B PE=2 SV=1
          Length = 435

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 2/200 (1%)

Query: 75  QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRA 134
           +G   +++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160

Query: 135 GAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQE 192
            AE VLQ ++G+ MPN +Q FR+NWASF  GEKR  ++ PD ++FVGDL+ DVTD +L E
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220

Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
           TF  RYPS K AKVVID  TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280

Query: 253 NKKTVSGQQQYPKGTFLVVG 272
            K+ ++ QQQ+     ++ G
Sbjct: 281 PKRAIANQQQHSSQAVILAG 300



 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 42/212 (19%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           ++++GDL   + +  L+  F+     V + KV+ +  TG+ +GYGF+ F       R L 
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262

Query: 142 TFNGTPMPNGEQNFRLNWA---------------------------SFGAGEKRD-DTPD 173
             NG    N  +  R+  A                           S G G + D ++ +
Sbjct: 263 EMNGAYCSN--RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320

Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
            TIFVG +  DV D  L++ F +++      K+ +       KG GFV+F D      A+
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAI 373

Query: 234 TEMNGVFCSTRPMRI--GPATNK--KTVSGQQ 261
             +NG       +R+  G + NK  +  SGQQ
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQ 405


>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
           GN=RBP47 PE=1 SV=1
          Length = 428

 Score =  270 bits (691), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 2/203 (0%)

Query: 71  PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
           P Q Q    + +T+WIGDLQ WMDE+YL++CF+  GEV++VK+IRNKQTGQ E YGF+EF
Sbjct: 73  PTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132

Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYM 189
            + A AE+VLQ++NGT MPN EQ FRLNWA F  GEKR +T  D +IFVGDLA+DVTD M
Sbjct: 133 NTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTM 192

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L++TF +RYPS KGAKVV+D  TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG
Sbjct: 193 LRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252

Query: 250 PATNKKTVSGQQQYPKGTFLVVG 272
            AT KK  S  +QY     ++ G
Sbjct: 253 VATPKKP-SAHEQYSSQAVILSG 274



 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 38/220 (17%)

Query: 73  QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFI 131
           +++ + G   ++++GDL   + +T L   FA     +   KV+ +  TG  +GYGF+ F 
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227

Query: 132 SRAGAERVLQTFNG-------------TPM-PNGEQNFRL-------NWASFGA---GEK 167
             +   R +   NG             TP  P+  + +          +AS GA   G +
Sbjct: 228 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQ 287

Query: 168 RD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
            D D+ + TIFVG L ++VTD  L+++F     +  G  V +    G  KG GFV+F D 
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSF-----NQFGEVVSVKIPAG--KGCGFVQFSDR 340

Query: 227 SEQLRAMTEMNGVFCSTRPMRI----GPATNK-KTVSGQQ 261
           S    A+ +++G     + +R+     PA  + +T SG Q
Sbjct: 341 SSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQ 380



 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 67  GVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYG 126
           G A    Q        T+++G L   + +  L   F   GEVV+VK+   K      G G
Sbjct: 280 GAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------GCG 333

Query: 127 FIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160
           F++F  R+ A+  +Q  +G  +  G+Q  RL+W 
Sbjct: 334 FVQFSDRSSAQEAIQKLSGAII--GKQAVRLSWG 365


>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
           GN=RBP47A PE=2 SV=1
          Length = 445

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 155/198 (78%), Gaps = 3/198 (1%)

Query: 80  EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           +++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE  
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176

Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
           LQ+F+G  MPN EQ FRLNWASF  GEKR  ++ PD +IFVGDLA DV+D +L ETF  R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
           YPS KGAKVVID  TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+  
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296

Query: 258 S-GQQQYPKGTFLVVGTG 274
           + GQQ   +   L  G G
Sbjct: 297 AYGQQNGSQALTLAGGHG 314



 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 33/222 (14%)

Query: 66  AGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEG 124
           A  +   ++  + G   ++++GDL   + +  L   FA     V   KV+ +  TG+ +G
Sbjct: 197 ASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKG 256

Query: 125 YGFIEFISRAGAERVLQTFNG-------------TP-------MPNGEQNFRLNWASFGA 164
           YGF+ F       R +   NG             TP         NG Q   L     G 
Sbjct: 257 YGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGN 316

Query: 165 GEKRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
           G   D ++ + TIFVG L ADVT+  L + F     S  G  V +    G  KG GFV+F
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPF-----SDFGEVVSVKIPVG--KGCGFVQF 369

Query: 224 GDESEQLRAMTEMNGVFCSTRPMRI--GPATNK--KTVSGQQ 261
            +      A+  +NG       +R+  G + NK  ++ SG Q
Sbjct: 370 ANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQ 411


>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
           GN=RBP47C' PE=2 SV=1
          Length = 434

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 148/197 (75%), Gaps = 7/197 (3%)

Query: 79  GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
           GE +T+W+GDLQ WMDE YLN+ F  A   E+V++KVIRNK  G  EGYGF+EF S   A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159

Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
           ++VLQ FNG PMPN +Q FRLNWASF  GEKR  ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219

Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
             +YPS K AKVV+D  TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279

Query: 255 KTVSGQQQ---YPKGTF 268
           KT   QQQ    P G F
Sbjct: 280 KTNGYQQQGGYMPSGAF 296



 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           ++++GDL   + +  L+  F+     V A KV+ +  TG+ +GYGF+ F       + + 
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259

Query: 142 TFNG-------------TPMP-NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
             NG             TP   NG Q       S        DT + TIFVG L + VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319

Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
             L++ F     S  G  V +    G  KG GFV+F +      A+ ++NG     + +R
Sbjct: 320 EDLKQPF-----SEFGEIVSVKIPVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 372

Query: 248 IGPATN 253
           +    N
Sbjct: 373 LSWGRN 378


>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
           GN=RBP47C PE=2 SV=1
          Length = 432

 Score =  247 bits (631), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 148/197 (75%), Gaps = 7/197 (3%)

Query: 79  GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
           GE +T+W+GDL +WMDE YLN+ FA   E  +V+VKVIRNK  G  EGYGF+EF S   A
Sbjct: 98  GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157

Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
           ++VL+ FNGT MPN +Q FRLNWASF  GEKR  ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217

Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
             +YPS K AKVV+D  TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277

Query: 255 KTVSGQQQ---YPKGTF 268
           KT   QQQ    P GT 
Sbjct: 278 KTNGYQQQGGYMPNGTL 294



 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           ++++GDL   + +  L+  F+     V A KV+ +  TG+ +GYGF+ F       + + 
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257

Query: 142 TFNG-------------TPMP-NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
             NG             TP   NG Q       +        D  + TIFVG L + VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317

Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
             L++ F     +  G  V +    G  KG GFV+F +      A+ ++NG     + +R
Sbjct: 318 EDLKQPF-----NEFGEIVSVKIPVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 370

Query: 248 I 248
           +
Sbjct: 371 L 371



 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + +  L   F   GE+V+VK+   K      G GF++F++R  AE  L+ 
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 358

Query: 143 FNGTPMPNGEQNFRLNWA 160
            NGT +  G+Q  RL+W 
Sbjct: 359 LNGTVI--GKQTVRLSWG 374


>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
           GN=TRNAU1AP PE=1 SV=1
          Length = 287

 Score =  157 bits (397), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 7/178 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L 
Sbjct: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63

Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
             NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YP
Sbjct: 64  KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
           S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178


>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
           GN=TRNAU1AP PE=2 SV=1
          Length = 287

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L 
Sbjct: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63

Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
             NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YP
Sbjct: 64  KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKT 256
           S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G     ++P+R+  A  K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178


>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
           GN=Trnau1ap PE=1 SV=1
          Length = 287

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L 
Sbjct: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63

Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
             NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YP
Sbjct: 64  KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
           S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178


>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
           GN=TRNAU1AP PE=2 SV=1
          Length = 287

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L 
Sbjct: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63

Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
             NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YP
Sbjct: 64  KINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
           S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178


>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
           GN=Trnau1ap PE=1 SV=2
          Length = 287

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 7/178 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L 
Sbjct: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63

Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
             NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YP
Sbjct: 64  KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121

Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
           S +G KVV+D  TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178


>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=csx1 PE=1 SV=1
          Length = 632

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 105/181 (58%), Gaps = 5/181 (2%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
           TLW+GDL+ WMD T++   +A   E V VKV+R+K +    +  Y F++F S A AER L
Sbjct: 86  TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145

Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRD---DTPDHTIFVGDLAADVTDYMLQETFRAR 197
             +N T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TFR+ 
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
           YPS   AK+++D +TG ++ YGFVRF  E EQ  A+  M G  C  RP+RI  A+ K   
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265

Query: 258 S 258
           S
Sbjct: 266 S 266



 Score = 40.0 bits (92), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + E  L  CF   G ++ +K+   K      G GF+++  ++ AE+ + T
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEKAINT 351

Query: 143 FNGTPMPNGEQNFRLNW 159
             G  +  G  + RL W
Sbjct: 352 MQGALV--GTSHIRLAW 366



 Score = 37.7 bits (86), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 30/203 (14%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
           ++++GDL    +++ L   F        + K+I +  TG    YGF+ F S    +  L 
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242

Query: 142 TFNGTPMPNGEQNFRL----NWASFGAGEKRDDTP------------------DHTIFVG 179
              G           +    + AS  A       P                  + T+FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302

Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
            LA+++++  LQ  F+   P  +   + I       KG GFV++ ++S   +A+  M G 
Sbjct: 303 GLASNLSEKDLQVCFQ---PFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGA 355

Query: 240 FCSTRPMRIGPATNKKTVSGQQQ 262
              T  +R+    N   VS   Q
Sbjct: 356 LVGTSHIRLAWGHNTLPVSALSQ 378


>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPBC23E6.01c PE=1 SV=2
          Length = 473

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 3/175 (1%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           TLW+G+L+ W+ E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + +
Sbjct: 94  TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152

Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
            N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212

Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
            K AK++ D  T  ++GYGFVRF DE++Q  A+ EM G  C  RP+R+G AT K 
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS 267



 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L  ++ E  L   F + GE+V VK+   K      G GF++F++R  AE  +  
Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQFVNRQSAEIAINQ 357

Query: 143 FNGTPMPNGEQNFRLNW 159
             G P+  G    RL+W
Sbjct: 358 LQGYPL--GNSRIRLSW 372



 Score = 39.3 bits (90), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
           M + E     N +++G+    +     T+++G+L   VT+  +Q+ +     + K  K++
Sbjct: 67  MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125

Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
            +R TG   GY FV F    E   AM+  N
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMSMNN 155


>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
           GN=trnau1apl PE=2 SV=1
          Length = 316

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 7/178 (3%)

Query: 81  IRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           + +LW+GDL  +MDE ++   F+  GE    VK+I ++ TG   GY F+E    A  +R 
Sbjct: 5   MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64

Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
           +Q  NG  +P     + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  +
Sbjct: 65  VQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKK 122

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNK 254
           +PS KGAKVV D   G ++GYGFV+F DE+EQ +A+ E  N      +P+RI  A NK
Sbjct: 123 FPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179


>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
           GN=trnau1ap PE=2 SV=1
          Length = 314

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)

Query: 81  IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           + +LW+G+L+ +MDE ++   FA  GE VV +++IR+K TG+  GYGF+E       ER 
Sbjct: 1   MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60

Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
           L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   
Sbjct: 61  LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---N 253
           + S    K+V+D   G +K  GFV F  E EQ RA+ ++ G      + +R+  A+   N
Sbjct: 118 FSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176

Query: 254 KKTVSGQQQ 262
           KK  S + Q
Sbjct: 177 KKKESSENQ 185


>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=NAM8 PE=1 SV=2
          Length = 523

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 25/202 (12%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFIS 132
           L++GDL    D+  +   +A  GE  + V+++ N                +GY F++F S
Sbjct: 56  LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115

Query: 133 RAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKR------DDTPDHTIFVGDLAADV 185
              A   L   NG  +PN   +  +LNWA+                 + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174

Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
           T+  L E F  RY ST  AK+V D++TG +KGYGFV+F +  EQ  A++EM GVF + R 
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234

Query: 246 MRIGPATNKKTVSGQQQYPKGT 267
           +++GP       SGQQQ+  G 
Sbjct: 235 IKVGP------TSGQQQHVSGN 250



 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T++IG L   + E  L   F   G +V VK+   K  G      F++++ R  AE  +  
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG------FVQYVDRLSAEAAIAG 367

Query: 143 FNGTPMPNGEQNFRLNWA 160
             G P+ N     RL+W 
Sbjct: 368 MQGFPIANSR--VRLSWG 383


>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
          Length = 672

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 110/239 (46%), Gaps = 70/239 (29%)

Query: 82  RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ----------------------- 118
           RTLW+GDL    DE  +   ++   + V VK+IR K+                       
Sbjct: 34  RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93

Query: 119 -------TGQIE-----------------------GYGFIEFISRAGAERVLQTFNGTPM 148
                  T Q++                       GY F+EF ++  A+  L + N TP+
Sbjct: 94  QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152

Query: 149 PNG-------------EQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQET 193
           PN              ++ FRLNWAS GA  +     TP+ ++FVGDL+   T+  L   
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSIPSTPEFSLFVGDLSPTATEADLLSL 211

Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
           F+ R+ S K  +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G +   R +R+  AT
Sbjct: 212 FQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYAT 270


>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=PUB1 PE=1 SV=4
          Length = 453

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%)

Query: 76  GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
           G+    R L++G+L   + E  L   F   G +  +K++ +K    +  Y F+E+     
Sbjct: 69  GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNV-NYAFVEYHQSHD 127

Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
           A   LQT NG  + N     ++NWA        DDT    +FVGDL  +V D  L+  F+
Sbjct: 128 ANIALQTLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFK 183

Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
             +PS     V+ D  TG ++GYGFV F  + +   AM  M G   + RP+RI  A  + 
Sbjct: 184 -DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242



 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 74  QQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISR 133
           QQ    +   L++GDL   +D+  L   F      ++  V+ + QTG   GYGF+ F S+
Sbjct: 154 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 213

Query: 134 AGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD 169
             A+  + +  G  + NG    R+NWA+     KRD
Sbjct: 214 DDAQNAMDSMQGQDL-NGRP-LRINWAA-----KRD 242


>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
          Length = 424

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + E  L   F   G VV   + +++ TGQ +GYGF+EF+S   A+  ++ 
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
            N     G P+       R+N AS  A  K  D     IF+G+L  ++ + +L +TF A 
Sbjct: 74  MNMIKLYGKPI-------RVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAF 123

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
               +  K++ D  TG +KGY F+ F        A+  MNG +   RP+ +  A  K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182


>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
           SV=1
          Length = 424

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + E  L   F   G VV   + +++ TGQ +GYGF+EF+S   A+  ++ 
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
            N     G P+       R+N AS  A  K  D     IF+G+L  ++ + +L +TF A 
Sbjct: 74  MNMIKLYGKPI-------RVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAF 123

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
               +  K++ D  TG +KGY F+ F        A+  MNG +   RP+ +  A  K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182


>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
          Length = 424

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           T+++G L   + E  L   F   G VV   + +++ TGQ +GYGF+EF+S   A+  ++ 
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
            N     G P+       R+N AS  A  K  D     IF+G+L  ++ + +L +TF A 
Sbjct: 74  MNMIKLYGKPI-------RVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAF 123

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
               +  K++ D  TG +KGY F+ F        A+  MNG +   RP+ +  A  K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182


>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
          Length = 375

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)

Query: 73  QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS 132
           +  GQP   RTL++G+L   + E  +   F+  G   + K+I    +   + Y F+EF  
Sbjct: 3   EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYE 57

Query: 133 RAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
              A   L   NG  +   E   ++NWA+  + +K+D +    +FVGDL+ ++T   ++ 
Sbjct: 58  HRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 115

Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
            F A +     A+VV D  TG++KGYGFV F ++ +   A+  M G +   R +R   AT
Sbjct: 116 AF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174

Query: 253 NK 254
            K
Sbjct: 175 RK 176



 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 27/188 (14%)

Query: 70  VPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIE 129
            P  Q+        +++GDL   +    + + FA  G++   +V+++  TG+ +GYGF+ 
Sbjct: 85  TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144

Query: 130 FISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDDT 171
           F ++  AE  +    G  +  G +  R NWA+                  F     +   
Sbjct: 145 FYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202

Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
            + T++ G +A+ +TD ++++TF     S  G  + I       KGY FVRF        
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEIRVFP--EKGYSFVRFSTHESAAH 255

Query: 232 AMTEMNGV 239
           A+  +NG 
Sbjct: 256 AIVSVNGT 263


>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
          Length = 402

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
           +T D  IF GDL  +V D +L   F +RYPS   AKVV D+ TG+TKGYGFV F D ++ 
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDY 357

Query: 230 LRAMTEMNGVFCSTRPMRI 248
           +RAM EMNG +  +RP+++
Sbjct: 358 VRAMREMNGRYVGSRPIKL 376



 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KV+R+K+TG+ +GYGF+ F       R ++  
Sbjct: 305 IFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREM 364

Query: 144 NG 145
           NG
Sbjct: 365 NG 366


>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
           SV=1
          Length = 233

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 36  QPSPYMMMMPPQPQAQPPAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDE 95
           Q      ++  +   +    W ++       GV    Q   +P E   L++G+L Y +D 
Sbjct: 10  QEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVE-GGQGFSEPPEEAKLFVGNLPYDVDS 68

Query: 96  TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155
             L   F   G V   +VI N++T +  G+GF+   +   AE+ ++  NG  M +G Q  
Sbjct: 69  EKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDM-DGRQLT 127

Query: 156 RLNWASFGAGEKR---DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
               A  G+ E+    D  P   ++VG+L  DV    L++ F + +     A+VV DR T
Sbjct: 128 VNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRET 186

Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
           GR++G+GFV    ESE   A+  ++G     R +R+  A  +
Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228


>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
          Length = 480

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
           D  D  IF GDL  +V D +L   F +R+PS   AKV+ D+ TG+TKGYGFV F D S+ 
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435

Query: 230 LRAMTEMNGVFCSTRPMRI 248
           +RAM EMNG +  +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454



 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KVIR+K+TG+ +GYGF+ F   +   R ++  
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442

Query: 144 NG 145
           NG
Sbjct: 443 NG 444


>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
           PE=1 SV=1
          Length = 629

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           +L++GDL + + ++ L   F   G VV V+V R+  T +  GYG++ F +   A R +Q 
Sbjct: 37  SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96

Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
            N  P+    +  R+ ++      +R    +  IF+ +L   +    L +TF + + +  
Sbjct: 97  LNYIPLYG--KPIRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTF-SSFGNIV 151

Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
             KV +D  +G++KGYGFV++ +E    +A+ ++NG+  + + + +GP
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198



 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 17/186 (9%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            +++ +L     +  L   F   G++ +  V+++ + G+ +G+GF+ F +   A R +++
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVES 274

Query: 143 FNGTPMPNGE-------------QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
            NG    + E                R+ +      E  D      ++V +L   ++D  
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEK 333

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L+E F + + +   +KV+ D   G +KG GFV F    E   AM++++G    ++P+ + 
Sbjct: 334 LKEIF-SPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391

Query: 250 PATNKK 255
            A  K+
Sbjct: 392 IAQRKE 397


>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
          Length = 474

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
           D  D  IF GDL  +V D +L   F +R+PS   AKV+ D+ TG+TKGYGFV F D S+ 
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429

Query: 230 LRAMTEMNGVFCSTRPMRI 248
           +RAM EMNG +  +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448



 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KVIR+K+TG+ +GYGF+ F   +   R ++  
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 436

Query: 144 NG 145
           NG
Sbjct: 437 NG 438


>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
          Length = 474

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
           D  D  IF GDL  +V D +L   F +R+PS   AKV+ D+ TG+TKGYGFV F D S+ 
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429

Query: 230 LRAMTEMNGVFCSTRPMRI 248
           +RAM EMNG +  +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448



 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KVIR+K+TG+ +GYGF+ F   +   R ++  
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 436

Query: 144 NG 145
           NG
Sbjct: 437 NG 438


>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
           glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
           0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
          Length = 579

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 12/220 (5%)

Query: 58  TQAAAPQAAGVAVPPQQQGQPGEIRT------LWIGDLQYWMDETYLNTCFAHTGEVVAV 111
           T+  A Q   +++  +Q+G   E ++      L++GDL   + E +L   F+  G V ++
Sbjct: 5   TEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSI 64

Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT 171
           +V R+  T    GY ++ F     A+  ++  N TP+    +  R+ W+      ++   
Sbjct: 65  RVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKG--KLCRIMWSQRDPSLRKKGA 122

Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
            +  IF+ +L  D+ +  L +TF   + +   +KV  D  TG++KG+G+V F ++     
Sbjct: 123 GN--IFIKNLHPDIDNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASE 178

Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKGTFLVV 271
           A+  +NG+  + + + +GP  +KK    + +  K  F  V
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNV 218



 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 17/191 (8%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            ++I ++     +       A  G+  +V V+     G+ +G+GF+ F++   A + ++ 
Sbjct: 217 NVYIKNINTETTDKEFEELVAKFGKTDSV-VLERTPEGENKGFGFVNFVNHEDAVKCVEE 275

Query: 143 FNGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
            N T                  +Q  +  + +    EK        +F+ +L   + D  
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRM-EKMAKYQGINLFIKNLDDSIDDKK 334

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L+E F A Y +   AKV+     G++KG+GFV F    E  +A+TE N    + +P+ + 
Sbjct: 335 LEEEF-APYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392

Query: 250 PATNKKTVSGQ 260
            A  K     Q
Sbjct: 393 IAQRKDVRRSQ 403


>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
          Length = 392

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 14/111 (12%)

Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
           R ++T  GT   + E    L W S           D  IF GDL  +V D +L   F +R
Sbjct: 270 RCIRTAAGT---SWEDQSLLEWESD----------DFRIFCGDLGNEVNDDILARAF-SR 315

Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
           YPS   AKV+ D+ TG+TKGYGFV F D ++ +RAM EMNG +  +RP+++
Sbjct: 316 YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366



 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KVIR+K+TG+ +GYGF+ F       R ++  
Sbjct: 295 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREM 354

Query: 144 NG 145
           NG
Sbjct: 355 NG 356


>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
           PE=2 SV=1
          Length = 291

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 29/199 (14%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           L++G+L + +D   L   F   G V  V+VI +K TG+  G+GF+   ++   E   Q F
Sbjct: 89  LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148

Query: 144 NG------------TPMPNGEQNF-----RLNWASFGAGEK-----------RDDTPDHT 175
           NG             P P   +N      R   +S+G G             R     + 
Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNR 208

Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
           ++VG+L+  V D  L+E F +   +   AKVV DR +GR++G+GFV +    E   A+  
Sbjct: 209 VYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267

Query: 236 MNGVFCSTRPMRIGPATNK 254
           +NGV    R +R+  A  +
Sbjct: 268 LNGVDLDGRSIRVSAAEER 286


>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
          Length = 448

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
           D  D  IF GDL  +V D +L   F +R+PS   AKV+ D+ TG+TKGYGFV F D S+ 
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403

Query: 230 LRAMTEMNGVFCSTRPMRI 248
           +RAM EMNG +  +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422



 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           ++ GDL   +++  L   F+     +  KVIR+K+TG+ +GYGF+ F   +   R ++  
Sbjct: 351 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 410

Query: 144 NG 145
           NG
Sbjct: 411 NG 412


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
           GN=epabp PE=2 SV=1
          Length = 629

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 98/186 (52%), Gaps = 18/186 (9%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            ++I +L   +D   L   F+  G +++ KV+ ++   +  GYGF+ F ++  A R +QT
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQT 157

Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
            NG  + N  + F  ++ S     +R+   ++         +++ +   D+ D  L+E F
Sbjct: 158 MNGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIF 211

Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
            A + +T   KV++D  TGR++G+GFV +G+  E  +A++EMNG   + R + +G A  +
Sbjct: 212 SA-FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269

Query: 255 KTVSGQ 260
               G+
Sbjct: 270 IERQGE 275



 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 17/180 (9%)

Query: 81  IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
           + +L++GDL   + E  L   F+  G +++++V R+  T +  GY +I F   A AER L
Sbjct: 10  LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69

Query: 141 QTFN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
            T N     G P+       R+ W+    G ++    +  +F+ +L   + +  L +TF 
Sbjct: 70  DTMNFEVIKGRPI-------RIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFS 120

Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
           A + +    KVV D    R  GYGFV F  +    RA+  MNG+  + R + +G   +++
Sbjct: 121 A-FGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177



 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 30/195 (15%)

Query: 80  EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           E   ++I +    MD+  L   F+  G  ++VKV+ +  TG+  G+GF+ + +   A++ 
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247

Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
           +   NG      E N R+ +   G  +KR +                        ++V +
Sbjct: 248 VSEMNGK-----EVNGRMIYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300

Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
           L   + D  L++ F + Y +   AKV+ +   G +KG+GFV F    E  +A+TEMNG  
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357

Query: 241 CSTRPMRIGPATNKK 255
            ST+P+ +  A  K+
Sbjct: 358 VSTKPLYVALAQRKE 372



 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
           P  +++VGDL  DVT+ ML E F    P     +V  D  T R+ GY ++ F   ++  R
Sbjct: 9   PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67

Query: 232 AMTEMNGVFCSTRPMRI 248
           A+  MN      RP+RI
Sbjct: 68  ALDTMNFEVIKGRPIRI 84


>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
           GN=epabp-b PE=2 SV=1
          Length = 629

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 18/186 (9%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            ++I +L   +D   L   F+  G++++ KV+ ++   +  GYGF+ F ++  A R +QT
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQT 157

Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
            NG  + N  + F  ++ S     +R+   ++         +++ +   D+ D  L+E F
Sbjct: 158 MNGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIF 211

Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
            A + +T   KV++D  +GR++G+GFV +G+  E  +A+TEMNG   + R + +G A  +
Sbjct: 212 SA-FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269

Query: 255 KTVSGQ 260
               G+
Sbjct: 270 IERQGE 275



 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 81  IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
           + +L+IGDL   + E  L   F+  G +++++V R+  T +  GY +I F   A AER L
Sbjct: 10  LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69

Query: 141 QTFN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
            T N     G P+       R+ W+    G ++    +  +F+ +L   + +  L +TF 
Sbjct: 70  DTMNFEVIKGRPI-------RIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFS 120

Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
           A +      KVV D    R  GYGFV F  +    RA+  MNG+  + R + +G   +++
Sbjct: 121 A-FGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177



 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)

Query: 80  EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
           E   ++I +    MD+  L   F+  G  ++VKV+ +  +G+  G+GF+ + +   A++ 
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKA 247

Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
           +   NG      E N R+ +   G  +KR +                        ++V +
Sbjct: 248 VTEMNGK-----EVNGRMVYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300

Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
           L   + D  L++ F + Y +    KV+ +   G +KG+GFV F    E  +A+TEMNG  
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357

Query: 241 CSTRPMRIGPATNKK 255
            ST+P+ +  A  K+
Sbjct: 358 VSTKPLYVALAQRKE 372



 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
           R + P  ++++GDL  DVT+ ML E F    P     +V  D  T R+ GY ++ F   +
Sbjct: 5   RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63

Query: 228 EQLRAMTEMNGVFCSTRPMRI 248
           +  RA+  MN      RP+RI
Sbjct: 64  DAERALDTMNFEVIKGRPIRI 84


>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
           PE=1 SV=1
          Length = 276

 Score = 81.6 bits (200), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 13/199 (6%)

Query: 63  PQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQI 122
           P   G A   ++  +P E   L++G+L Y +D   L   F   G V   +VI N++T + 
Sbjct: 78  PSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRS 137

Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA--GEK-----RDDTPDHT 175
            G+GF+   +   A++ ++ ++   +     N RL   +  A  G +     R   P + 
Sbjct: 138 RGFGFVTMSTVEEADKAVELYSQYDL-----NGRLLTVNKAAPRGSRPERAPRTFQPTYR 192

Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
           I+VG++  D+ D  L++ F + +     A+VV DR +GR++G+GFV    E+E   A+  
Sbjct: 193 IYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251

Query: 236 MNGVFCSTRPMRIGPATNK 254
           ++G     R +R+  A  +
Sbjct: 252 LDGQTLDGRTIRVNAAEER 270


>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
           PE=1 SV=1
          Length = 324

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 18/189 (9%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           L++G+L + M  + L+  FA  G V  V+++ ++ T +  G+ F+   S   A+  ++ F
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175

Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRD--------------DTPDHTIFVGDLAADVTDYM 189
           +G+ +  G +  ++N+     G +R+              D+P H ++V +L+  +T   
Sbjct: 176 DGSQV--GGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-HKLYVANLSWALTSQG 232

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L++ F A  P    AKV+ DR +GR++G+GF+ F        A+  MN V    RP+R+ 
Sbjct: 233 LRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291

Query: 250 PATNKKTVS 258
            A  K  VS
Sbjct: 292 VAGQKAPVS 300


>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
           plumbaginifolia PE=2 SV=1
          Length = 292

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 29/199 (14%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           L++G+L + +D   L   F   G V  V+VI +K +G+  G+GF+   ++   E   Q F
Sbjct: 90  LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149

Query: 144 NG------------TPMPNGEQNF-----RLNWASFGAGEK-----------RDDTPDHT 175
           NG             P P   +N      R   +S+G G             R     + 
Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNR 209

Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
           ++VG+L+  V D  L+E F +   +   AKVV DR +GR++G+GFV +    E   A+  
Sbjct: 210 VYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268

Query: 236 MNGVFCSTRPMRIGPATNK 254
           +NG+    R +R+  A  +
Sbjct: 269 LNGIDLDGRSIRVSAAEER 287


>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
          Length = 392

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
           D  IF GDL  +V D +L   F +RYPS   AKV+ D+ TG+TKGYGFV F D ++ +RA
Sbjct: 292 DFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350

Query: 233 MTEMNGVFCSTRPMRI 248
             EMNG +  +RP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366


>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
          Length = 392

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 73  QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK--------------- 117
           +  GQP   RTL++G+L   + E  +   F+  G   + K+I  +               
Sbjct: 3   EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVL 59

Query: 118 QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIF 177
           Q    + Y F+EF     A   L   NG  +   E   ++NWA+  + +K+D +    +F
Sbjct: 60  QHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVF 117

Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
           VGDL+ ++T   ++  F A +     A+VV D  TG++KGYGFV F ++ +   A+  M 
Sbjct: 118 VGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176

Query: 238 GVFCSTRPMRIGPATNK 254
           G +   R +R   AT K
Sbjct: 177 GQWLGGRQIRTNWATRK 193



 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 27/188 (14%)

Query: 70  VPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIE 129
            P  Q+        +++GDL   +    + + FA  G++   +V+++  TG+ +GYGF+ 
Sbjct: 102 TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161

Query: 130 FISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDDT 171
           F ++  AE  +    G  +  G +  R NWA+                  F     +   
Sbjct: 162 FYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 219

Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
            + T++ G +A+ +TD ++++TF     S  G  + I       KGY FVRF        
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEIRVFP--EKGYSFVRFSTHESAAH 272

Query: 232 AMTEMNGV 239
           A+  +NG 
Sbjct: 273 AIVSVNGT 280


>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
           GN=RBP31 PE=1 SV=1
          Length = 329

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 77  QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
           +P E   L++G+L Y ++   L   F   G V   +VI N++T Q  G+GF+   S   A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204

Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGA--GEK-----RDDTPDHTIFVGDLAADVTDYM 189
           E  ++ FN   +     N RL   +  A  G +     R   P   ++VG+L  DV +  
Sbjct: 205 ETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGR 259

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L++ F + +     A+VV DR TGR++G+GFV   D  E   A++ ++G     R +R+ 
Sbjct: 260 LEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318

Query: 250 PATNK 254
            A  +
Sbjct: 319 VAEER 323


>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
           PE=2 SV=1
          Length = 273

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 24/184 (13%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           +++G+L +  D   L   F   G V  V+VI +K TG+  G+GF+   S+   E   Q F
Sbjct: 89  IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 144 NGTPMPNGEQNFRLNWASFGAG---EKRDD-------------TPDHTIFVGDLAADVTD 187
           NG  +    +  R+N     +G   EKR++                + ++VG+LA  V  
Sbjct: 149 NGYELDG--RALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 201

Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
             L ET  +       AKVV DR +GR++G+GFV +    E   A+  ++GV  + R +R
Sbjct: 202 DAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260

Query: 248 IGPA 251
           + PA
Sbjct: 261 VSPA 264



 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
           G  E+R+ +PD  IFVG+L        L E F  R  + +  +V+ D+LTGR++G+GFV 
Sbjct: 76  GVEEERNFSPDLKIFVGNLPFSADSAALAELFE-RAGNVEMVEVIYDKLTGRSRGFGFVT 134

Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRI--GPATNKK 255
              + E   A  + NG     R +R+  GP   K+
Sbjct: 135 MSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKR 169


>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
           PE=2 SV=1
          Length = 660

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 25/198 (12%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
           +L+ GDL   + E +L   F H   VV+V+V R++    + GY +I F +   A R ++ 
Sbjct: 50  SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSL-GYAYINFSNPNDAYRAMEA 108

Query: 143 FNGTPM---------PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
            N TP+          N + + RL+    G G          IF+ +L A + +  L ET
Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLS----GKG---------NIFIKNLDASIDNKALFET 155

Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
           F + + +    KV +D +TGR+KGYGFV+F  E     A+ ++NG+  + + + +G    
Sbjct: 156 FSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213

Query: 254 KKTVSGQQQYPKGTFLVV 271
           ++  +  +  P   F  V
Sbjct: 214 RQERARDENTPTPRFTNV 231



 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 17/186 (9%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            +++ +L   + E  L   F   G V++  V+   Q+G    +GF+ F     A   ++ 
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288

Query: 143 FNGTPMPNG-------------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
            NG  + +              E+  R  +       + + +    +++ +L   V D  
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERIN-RFEKSQGANLYLKNLDDSVDDEK 347

Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
           L+E F + Y +   +KV+++   G ++G+GFV + +  E LRA++EMNG     +P+ I 
Sbjct: 348 LKEMF-SEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405

Query: 250 PATNKK 255
            A  K+
Sbjct: 406 LAQRKE 411


>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
           plumbaginifolia PE=2 SV=1
          Length = 279

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 30/190 (15%)

Query: 84  LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
           +++G+L +  D   L   F   G V  V+VI +K TG+  G+GF+   S+   E   Q F
Sbjct: 89  IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 144 NGTPMPNGEQNFRLNWASFGAG---EKRDDTP-------------------DHTIFVGDL 181
           NG  +    +  R+N     +G   EKR+++                     + ++VG+L
Sbjct: 149 NGYELDG--RALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNL 201

Query: 182 AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241
           A  V    L ET  +       AKVV DR +GR++G+GFV +    E   A+  ++GV  
Sbjct: 202 AWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 260

Query: 242 STRPMRIGPA 251
           + R +R+ PA
Sbjct: 261 NGRAIRVSPA 270



 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
           R+ +PD  IFVG+L        L E F  R  + +  +V+ D+LTGR++G+GFV    + 
Sbjct: 81  RNFSPDLKIFVGNLLFSADSAALAELFE-RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKE 139

Query: 228 EQLRAMTEMNGVFCSTRPMRI--GPATNKKTVS 258
           E   A  + NG     R +R+  GP   K+  S
Sbjct: 140 EVEAACQQFNGYELDGRALRVNSGPPPEKRENS 172


>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
          Length = 375

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 60  AAAPQAAGVAVPPQQQGQPGEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
           A  P        P +     + +T L +  L   M +  L + F   GE+ + K++R+K 
Sbjct: 44  ANCPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI 103

Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFV 178
           TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V
Sbjct: 104 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYV 157

Query: 179 GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
             L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E   A+  +NG
Sbjct: 158 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216



 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 50/220 (22%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            L++  L   M +  L   F+  G ++  +++ ++ TG   G GFI F  R  AE  ++ 
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213

Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDT------------------------------- 171
            NG   P   +   + +A+    +K + T                               
Sbjct: 214 LNGQKPPGATEPITVKFAN-NPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFSRFSPMT 272

Query: 172 ------------PDH-----TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR 214
                       P H      IFV +LA D  + +L + F   + +    KV+ D  T +
Sbjct: 273 IDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNK 331

Query: 215 TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
            KG+GFV   +  E   A+  +NG     R +++   T+K
Sbjct: 332 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 371



 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
           M QE  ++ + S    +  K+V D++TG++ GYGFV + D  +  +A+  +NG+   T+ 
Sbjct: 78  MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 137

Query: 246 MRIGPA 251
           +++  A
Sbjct: 138 IKVSYA 143



 Score = 36.2 bits (82), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 66  AGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY 125
           AG+  P    G  G    +++ +L    DE+ L   F   G V  VKVIR+  T + +G+
Sbjct: 280 AGINFP----GHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGF 335

Query: 126 GFIEFISRAGAERVLQTFNG 145
           GF+   +   A   + + NG
Sbjct: 336 GFVTMTNYDEAAMAIASLNG 355


>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
          Length = 359

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 72  PQQQGQPGEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
           P   G   + +T L +  L   M +  L + F   GE+ + K++R+K TGQ  GYGF+ +
Sbjct: 28  PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
           I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L
Sbjct: 88  IDPKDAEKAINTLNGLRLQ--TKTIKVSYARPSSASIR----DANLYVSGLPKTMTQKEL 141

Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
           ++ F ++Y     +++++D++TG ++G GF+RF    E   A+  +NG
Sbjct: 142 EQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 60/231 (25%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            L++  L   M +  L   F+  G ++  +++ ++ TG   G GFI F  R  AE  ++ 
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185

Query: 143 FNGT---------------------------------------PMPNGEQNFRL-NWASF 162
            NG                                        P+    Q FRL N  + 
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNM 245

Query: 163 GAGEKR--------------DDTPDH-----TIFVGDLAADVTDYMLQETFRARYPSTKG 203
             G KR               + P H      IFV +LA D  + +L + F   + +   
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMF-GPFGAVTN 304

Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
            KV+ D  T + KG+GFV   +  E   A+  +NG     R +++   TNK
Sbjct: 305 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355



 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 66  AGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY 125
           AG+ +P    G PG    +++ +L    DE+ L   F   G V  VKVIR+  T + +G+
Sbjct: 264 AGINIP----GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGF 319

Query: 126 GFIEFISRAGAERVLQTFNG 145
           GF+   +   A   + + NG
Sbjct: 320 GFVTMTNYDEAAMAIASLNG 339


>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
          Length = 359

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 72  PQQQGQPGEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
           P   G   + +T L +  L   M +  L + F   GE+ + K++R+K TGQ  GYGF+ +
Sbjct: 28  PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
           I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L
Sbjct: 88  IDPKDAEKAINTLNGLRLQ--TKTIKVSYARPSSASIR----DANLYVSGLPKTMTQKEL 141

Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
           ++ F ++Y     +++++D++TG ++G GF+RF    E   A+  +NG
Sbjct: 142 EQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 60/231 (25%)

Query: 83  TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
            L++  L   M +  L   F+  G ++  +++ ++ TG   G GFI F  R  AE  ++ 
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185

Query: 143 FNGT---------------------------------------PMPNGEQNFRL-NWASF 162
            NG                                        P+    Q FRL N  + 
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNM 245

Query: 163 GAGEKR--------------DDTPDH-----TIFVGDLAADVTDYMLQETFRARYPSTKG 203
             G KR               + P H      IFV +LA D  + +L + F   + +   
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMF-GPFGAVTN 304

Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
            KV+ D  T + KG+GFV   +  E   A+  +NG     R +++   TNK
Sbjct: 305 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355



 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 66  AGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY 125
           AG+ +P    G PG    +++ +L    DE+ L   F   G V  VKVIR+  T + +G+
Sbjct: 264 AGINIP----GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGF 319

Query: 126 GFIEFISRAGAERVLQTFNG 145
           GF+   +   A   + + NG
Sbjct: 320 GFVTMTNYDEAAMAIASLNG 339


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,885,937
Number of Sequences: 539616
Number of extensions: 6060182
Number of successful extensions: 83810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 1584
Number of HSP's that attempted gapping in prelim test: 42105
Number of HSP's gapped (non-prelim): 22827
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)