Query 021950
Match_columns 305
No_of_seqs 287 out of 2436
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.9E-36 4.1E-41 263.6 22.4 175 77-258 103-279 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.6E-35 3.5E-40 236.6 18.2 172 79-259 60-243 (321)
3 TIGR01645 half-pint poly-U bin 100.0 4.9E-34 1.1E-38 260.9 22.2 176 79-257 105-287 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.2E-33 1.1E-37 247.2 23.5 169 80-255 2-172 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.5E-33 1.6E-37 246.2 23.6 176 80-256 88-351 (352)
6 TIGR01628 PABP-1234 polyadenyl 100.0 8.1E-33 1.8E-37 259.8 22.6 184 83-273 2-185 (562)
7 KOG0144 RNA-binding protein CU 100.0 2E-32 4.4E-37 231.7 16.1 179 76-259 29-211 (510)
8 TIGR01622 SF-CC1 splicing fact 100.0 8.4E-31 1.8E-35 240.7 21.7 172 78-253 86-265 (457)
9 KOG0145 RNA-binding protein EL 100.0 1.7E-30 3.7E-35 206.7 19.8 174 78-254 38-358 (360)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 3.6E-30 7.9E-35 235.3 22.2 195 79-287 56-254 (578)
11 TIGR01628 PABP-1234 polyadenyl 100.0 8.4E-30 1.8E-34 239.4 22.7 173 80-257 87-264 (562)
12 KOG0131 Splicing factor 3b, su 100.0 5.9E-31 1.3E-35 198.8 11.9 176 77-258 5-181 (203)
13 KOG0117 Heterogeneous nuclear 100.0 1.7E-29 3.6E-34 215.1 21.2 202 79-294 81-290 (506)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.3E-28 4.9E-33 227.6 25.7 170 76-255 170-376 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-27 2.7E-32 219.6 23.0 167 78-254 272-480 (481)
16 TIGR01648 hnRNP-R-Q heterogene 100.0 6.9E-28 1.5E-32 220.3 19.0 170 79-257 136-310 (578)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-27 3.6E-32 218.8 20.3 162 81-255 2-175 (481)
18 KOG0127 Nucleolar protein fibr 100.0 1.1E-27 2.4E-32 208.5 16.5 219 81-304 117-446 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.6E-27 1.6E-31 217.4 21.5 172 79-253 293-501 (509)
20 KOG0117 Heterogeneous nuclear 100.0 2.7E-27 5.9E-32 201.6 15.5 173 78-259 161-336 (506)
21 KOG0127 Nucleolar protein fibr 99.9 5.7E-27 1.2E-31 204.1 16.4 175 81-259 5-201 (678)
22 KOG0146 RNA-binding protein ET 99.9 4.6E-27 1E-31 187.9 13.2 177 79-257 17-368 (371)
23 KOG0109 RNA-binding protein LA 99.9 2.6E-27 5.6E-32 191.5 10.3 152 82-258 3-154 (346)
24 KOG0148 Apoptosis-promoting RN 99.9 3.1E-26 6.6E-31 183.5 15.6 181 78-296 3-197 (321)
25 KOG0123 Polyadenylate-binding 99.9 1.2E-25 2.5E-30 197.1 18.3 197 82-299 2-200 (369)
26 KOG0124 Polypyrimidine tract-b 99.9 1.9E-26 4.2E-31 191.8 10.9 172 81-255 113-291 (544)
27 KOG0144 RNA-binding protein CU 99.9 8.3E-26 1.8E-30 191.8 12.6 176 80-257 123-507 (510)
28 KOG0147 Transcriptional coacti 99.9 2E-26 4.4E-31 201.4 9.0 208 77-288 175-398 (549)
29 TIGR01622 SF-CC1 splicing fact 99.9 1.2E-24 2.6E-29 200.0 20.3 166 81-253 186-447 (457)
30 KOG4205 RNA-binding protein mu 99.9 1.6E-23 3.4E-28 177.4 11.4 176 79-259 4-181 (311)
31 TIGR01645 half-pint poly-U bin 99.9 3.7E-22 8E-27 183.2 19.8 82 79-162 202-283 (612)
32 KOG0110 RNA-binding protein (R 99.9 9E-23 2E-27 183.4 12.9 172 82-256 516-695 (725)
33 KOG0123 Polyadenylate-binding 99.9 2.1E-21 4.6E-26 170.3 17.7 168 83-257 78-249 (369)
34 KOG4206 Spliceosomal protein s 99.8 1.9E-19 4.2E-24 142.0 16.3 161 81-252 9-220 (221)
35 KOG1457 RNA binding protein (c 99.8 4.2E-19 9.1E-24 138.9 15.4 161 76-241 29-273 (284)
36 KOG0147 Transcriptional coacti 99.8 5.1E-20 1.1E-24 161.6 11.4 165 80-252 277-526 (549)
37 PLN03134 glycine-rich RNA-bind 99.8 3.3E-19 7.1E-24 136.7 11.8 87 170-257 31-117 (144)
38 TIGR01659 sex-lethal sex-letha 99.8 1.4E-18 3.1E-23 151.8 13.4 113 168-287 102-218 (346)
39 KOG0105 Alternative splicing f 99.8 6.2E-18 1.4E-22 128.6 14.5 151 79-242 4-176 (241)
40 KOG4211 Splicing factor hnRNP- 99.8 7.8E-18 1.7E-22 146.1 15.9 166 79-253 8-181 (510)
41 KOG1548 Transcription elongati 99.8 2.9E-17 6.3E-22 136.6 18.3 172 78-257 131-355 (382)
42 KOG4212 RNA-binding protein hn 99.8 2.4E-17 5.3E-22 140.8 16.7 168 79-251 42-291 (608)
43 PLN03134 glycine-rich RNA-bind 99.8 1E-17 2.2E-22 128.5 11.1 84 78-163 31-114 (144)
44 KOG0110 RNA-binding protein (R 99.7 1.3E-16 2.9E-21 144.0 15.7 165 79-252 383-596 (725)
45 KOG0106 Alternative splicing f 99.7 2.5E-17 5.4E-22 131.5 7.0 151 82-251 2-168 (216)
46 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.3E-21 107.2 9.8 70 176-247 1-70 (70)
47 KOG0124 Polypyrimidine tract-b 99.7 4.3E-16 9.3E-21 130.5 13.6 172 77-251 206-532 (544)
48 KOG1190 Polypyrimidine tract-b 99.7 9.4E-16 2E-20 130.2 14.5 161 81-253 297-490 (492)
49 KOG0122 Translation initiation 99.7 2.1E-16 4.7E-21 125.6 9.6 83 171-254 187-269 (270)
50 KOG0125 Ataxin 2-binding prote 99.7 6.2E-16 1.3E-20 127.9 10.2 89 168-259 91-179 (376)
51 KOG0149 Predicted RNA-binding 99.7 2.2E-16 4.8E-21 125.0 7.3 82 170-253 9-90 (247)
52 KOG1190 Polypyrimidine tract-b 99.7 3.7E-15 8.1E-20 126.6 15.0 167 79-255 148-374 (492)
53 KOG0126 Predicted RNA-binding 99.7 1.4E-17 3E-22 126.4 0.4 109 140-257 10-118 (219)
54 KOG0122 Translation initiation 99.6 6.5E-16 1.4E-20 122.9 9.2 85 77-163 185-269 (270)
55 PF00076 RRM_1: RNA recognitio 99.6 1.3E-15 2.8E-20 102.6 8.5 70 84-156 1-70 (70)
56 PF14259 RRM_6: RNA recognitio 99.6 2.4E-15 5.1E-20 101.4 9.7 70 176-247 1-70 (70)
57 KOG4212 RNA-binding protein hn 99.6 1.2E-14 2.5E-19 124.6 15.6 74 172-251 535-608 (608)
58 KOG0121 Nuclear cap-binding pr 99.6 1E-15 2.3E-20 109.6 7.2 82 78-161 33-114 (153)
59 COG0724 RNA-binding proteins ( 99.6 7.8E-15 1.7E-19 125.9 13.9 151 81-234 115-285 (306)
60 KOG0131 Splicing factor 3b, su 99.6 1.5E-15 3.2E-20 115.6 7.7 107 171-283 7-113 (203)
61 KOG0121 Nuclear cap-binding pr 99.6 1.5E-15 3.2E-20 108.8 7.2 80 173-253 36-115 (153)
62 KOG0120 Splicing factor U2AF, 99.6 6.8E-15 1.5E-19 131.1 12.9 174 77-253 285-491 (500)
63 KOG0107 Alternative splicing f 99.6 1.7E-15 3.6E-20 114.6 7.7 79 172-256 9-87 (195)
64 KOG0145 RNA-binding protein EL 99.6 2.9E-15 6.3E-20 120.1 9.1 87 170-257 38-124 (360)
65 KOG0149 Predicted RNA-binding 99.6 2.2E-15 4.7E-20 119.5 8.0 82 78-162 9-90 (247)
66 KOG0113 U1 small nuclear ribon 99.6 4.3E-15 9.2E-20 121.5 9.6 89 168-257 96-184 (335)
67 KOG0125 Ataxin 2-binding prote 99.6 1.3E-14 2.9E-19 120.0 11.6 87 76-166 91-177 (376)
68 PLN03120 nucleic acid binding 99.6 1E-14 2.2E-19 119.7 10.2 78 173-255 4-81 (260)
69 PF14259 RRM_6: RNA recognitio 99.6 1.6E-14 3.5E-19 97.3 8.1 70 84-156 1-70 (70)
70 KOG0107 Alternative splicing f 99.6 1.2E-14 2.5E-19 110.1 7.5 78 79-163 8-85 (195)
71 KOG0114 Predicted RNA-binding 99.6 3.3E-14 7.3E-19 98.1 9.0 85 168-256 13-97 (124)
72 KOG0129 Predicted RNA-binding 99.6 1.6E-13 3.6E-18 120.3 15.6 198 77-279 255-483 (520)
73 KOG0130 RNA-binding protein RB 99.6 7.2E-15 1.6E-19 106.3 5.9 88 169-257 68-155 (170)
74 KOG4207 Predicted splicing fac 99.6 8E-15 1.7E-19 113.8 6.4 85 171-256 11-95 (256)
75 PLN03213 repressor of silencin 99.5 2.6E-14 5.6E-19 124.3 9.5 82 169-255 6-89 (759)
76 smart00362 RRM_2 RNA recogniti 99.5 1.1E-13 2.3E-18 93.2 9.9 72 175-249 1-72 (72)
77 KOG0108 mRNA cleavage and poly 99.5 2.5E-14 5.4E-19 126.9 8.1 83 174-257 19-101 (435)
78 KOG1365 RNA-binding protein Fu 99.5 6.8E-14 1.5E-18 118.1 10.1 169 79-253 159-361 (508)
79 PLN03120 nucleic acid binding 99.5 6.3E-14 1.4E-18 115.0 9.7 76 81-162 4-79 (260)
80 KOG0108 mRNA cleavage and poly 99.5 1.5E-14 3.4E-19 128.2 6.2 80 82-163 19-98 (435)
81 smart00360 RRM RNA recognition 99.5 1.1E-13 2.3E-18 92.8 9.0 71 178-249 1-71 (71)
82 KOG0126 Predicted RNA-binding 99.5 2.3E-15 5E-20 114.4 0.8 81 79-161 33-113 (219)
83 KOG0120 Splicing factor U2AF, 99.5 7E-14 1.5E-18 124.7 9.2 171 77-257 171-372 (500)
84 KOG1456 Heterogeneous nuclear 99.5 4.4E-12 9.6E-17 106.9 19.2 169 76-254 282-491 (494)
85 KOG0111 Cyclophilin-type pepti 99.5 1.9E-14 4.1E-19 112.7 4.5 86 172-258 9-94 (298)
86 KOG0113 U1 small nuclear ribon 99.5 1.4E-13 3.1E-18 112.7 9.7 85 76-160 96-180 (335)
87 KOG0226 RNA-binding proteins [ 99.5 4E-13 8.7E-18 107.7 11.6 171 81-255 96-271 (290)
88 KOG1456 Heterogeneous nuclear 99.5 7.1E-12 1.5E-16 105.7 19.0 158 87-255 128-364 (494)
89 KOG4207 Predicted splicing fac 99.5 7.8E-14 1.7E-18 108.3 6.6 85 77-163 9-93 (256)
90 PLN03121 nucleic acid binding 99.5 3.5E-13 7.7E-18 108.9 10.1 77 172-253 4-80 (243)
91 cd00590 RRM RRM (RNA recogniti 99.4 1.2E-12 2.5E-17 88.6 10.2 74 175-250 1-74 (74)
92 PLN03213 repressor of silencin 99.4 4.1E-13 9E-18 116.9 9.1 79 79-163 8-88 (759)
93 KOG0114 Predicted RNA-binding 99.4 9.7E-13 2.1E-17 90.9 8.6 81 76-161 13-93 (124)
94 PF13893 RRM_5: RNA recognitio 99.4 8E-13 1.7E-17 84.7 7.7 56 190-251 1-56 (56)
95 PLN03121 nucleic acid binding 99.4 9E-13 2E-17 106.5 9.7 76 80-161 4-79 (243)
96 smart00362 RRM_2 RNA recogniti 99.4 1.4E-12 3E-17 87.7 8.7 71 83-157 1-71 (72)
97 COG0724 RNA-binding proteins ( 99.4 1.1E-12 2.4E-17 112.4 10.2 79 173-252 115-193 (306)
98 KOG0111 Cyclophilin-type pepti 99.4 2.4E-13 5.2E-18 106.6 5.2 86 79-166 8-93 (298)
99 KOG0130 RNA-binding protein RB 99.4 5.5E-13 1.2E-17 96.6 6.5 83 79-163 70-152 (170)
100 KOG0105 Alternative splicing f 99.4 1.6E-12 3.5E-17 99.3 9.2 79 172-254 5-83 (241)
101 smart00360 RRM RNA recognition 99.4 2.2E-12 4.7E-17 86.4 8.4 70 86-157 1-70 (71)
102 smart00361 RRM_1 RNA recogniti 99.4 2.5E-12 5.5E-17 86.3 8.5 62 187-249 2-70 (70)
103 KOG0109 RNA-binding protein LA 99.4 1.1E-12 2.3E-17 107.2 6.4 97 174-287 3-103 (346)
104 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.3E-16 83.0 9.4 73 83-158 1-73 (74)
105 KOG0146 RNA-binding protein ET 99.3 4.1E-12 9E-17 102.6 6.9 99 153-257 3-104 (371)
106 KOG0415 Predicted peptidyl pro 99.3 4.5E-12 9.8E-17 106.2 6.7 83 171-254 237-319 (479)
107 KOG4454 RNA binding protein (R 99.3 1.3E-12 2.7E-17 102.6 1.5 140 79-241 7-150 (267)
108 KOG4210 Nuclear localization s 99.3 7E-12 1.5E-16 106.5 6.1 175 79-257 86-267 (285)
109 smart00361 RRM_1 RNA recogniti 99.2 3.6E-11 7.8E-16 80.7 7.5 61 95-157 2-69 (70)
110 KOG4206 Spliceosomal protein s 99.2 3.4E-11 7.3E-16 95.6 8.5 85 171-259 7-95 (221)
111 KOG4660 Protein Mei2, essentia 99.2 3.8E-11 8.2E-16 106.6 9.6 70 75-149 69-138 (549)
112 KOG4205 RNA-binding protein mu 99.2 2E-11 4.4E-16 104.0 7.5 124 172-297 5-131 (311)
113 KOG4208 Nucleolar RNA-binding 99.2 3.8E-11 8.3E-16 93.8 8.2 86 168-254 44-130 (214)
114 KOG4211 Splicing factor hnRNP- 99.2 1.8E-10 3.8E-15 100.9 13.0 165 79-251 101-355 (510)
115 KOG0132 RNA polymerase II C-te 99.2 5.4E-11 1.2E-15 109.1 8.9 81 171-258 419-499 (894)
116 KOG0112 Large RNA-binding prot 99.2 1.3E-11 2.9E-16 114.7 5.0 168 76-259 367-536 (975)
117 PF13893 RRM_5: RNA recognitio 99.2 6.6E-11 1.4E-15 75.7 6.4 56 98-160 1-56 (56)
118 KOG4307 RNA binding protein RB 99.2 1.2E-09 2.5E-14 99.3 14.9 170 79-254 309-514 (944)
119 KOG0132 RNA polymerase II C-te 99.2 8.5E-11 1.8E-15 107.8 7.7 107 81-195 421-528 (894)
120 KOG0128 RNA-binding protein SA 99.1 4E-12 8.7E-17 117.6 -1.2 150 79-253 665-814 (881)
121 KOG0153 Predicted RNA-binding 99.1 1.6E-10 3.6E-15 96.8 8.4 81 166-253 221-302 (377)
122 KOG4307 RNA binding protein RB 99.1 5.4E-10 1.2E-14 101.4 12.0 77 173-250 867-943 (944)
123 KOG4208 Nucleolar RNA-binding 99.1 2E-10 4.4E-15 89.8 7.6 81 79-161 47-128 (214)
124 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.9E-10 1.1E-14 99.6 8.1 82 171-253 403-484 (940)
125 KOG0415 Predicted peptidyl pro 99.0 3.8E-10 8.3E-15 94.8 6.4 82 79-162 237-318 (479)
126 KOG1365 RNA-binding protein Fu 99.0 2.3E-09 5E-14 91.1 9.9 170 78-252 57-241 (508)
127 KOG0153 Predicted RNA-binding 98.9 3.5E-09 7.7E-14 89.0 8.4 82 74-162 221-302 (377)
128 KOG1548 Transcription elongati 98.9 1.7E-08 3.6E-13 84.9 10.2 85 171-257 132-224 (382)
129 KOG0533 RRM motif-containing p 98.9 1.1E-08 2.4E-13 84.1 8.3 85 169-255 79-163 (243)
130 PF04059 RRM_2: RNA recognitio 98.8 3.9E-08 8.5E-13 69.2 9.3 81 174-254 2-87 (97)
131 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.3E-08 2.9E-13 90.6 8.2 84 78-163 402-485 (940)
132 KOG1457 RNA binding protein (c 98.8 4.6E-08 1E-12 77.5 9.9 87 170-257 31-121 (284)
133 KOG0226 RNA-binding proteins [ 98.8 6.3E-09 1.4E-13 83.9 5.1 82 78-161 187-268 (290)
134 PF04059 RRM_2: RNA recognitio 98.8 8.7E-08 1.9E-12 67.5 9.4 81 82-162 2-86 (97)
135 KOG4660 Protein Mei2, essentia 98.8 7E-09 1.5E-13 92.4 4.2 72 170-247 72-143 (549)
136 KOG4209 Splicing factor RNPS1, 98.7 1.2E-08 2.7E-13 84.0 5.3 85 168-254 96-180 (231)
137 KOG0116 RasGAP SH3 binding pro 98.7 2.9E-08 6.4E-13 88.1 8.0 81 173-255 288-368 (419)
138 KOG2193 IGF-II mRNA-binding pr 98.7 1.4E-09 2.9E-14 93.6 -1.2 154 82-253 2-156 (584)
139 KOG0533 RRM motif-containing p 98.7 7.3E-08 1.6E-12 79.3 8.3 83 77-162 79-161 (243)
140 KOG0116 RasGAP SH3 binding pro 98.6 2.4E-07 5.3E-12 82.3 9.9 81 78-161 285-365 (419)
141 KOG0106 Alternative splicing f 98.6 4E-08 8.6E-13 79.0 4.1 71 174-253 2-72 (216)
142 KOG4454 RNA binding protein (R 98.6 1.9E-08 4.2E-13 79.3 1.9 80 171-253 7-86 (267)
143 KOG4209 Splicing factor RNPS1, 98.5 1.2E-07 2.6E-12 78.2 5.7 83 77-162 97-179 (231)
144 KOG0151 Predicted splicing reg 98.5 1.5E-07 3.3E-12 86.1 6.6 83 78-162 171-256 (877)
145 KOG0151 Predicted splicing reg 98.5 1.9E-07 4.2E-12 85.4 7.1 83 170-253 171-256 (877)
146 KOG4676 Splicing factor, argin 98.5 1.3E-08 2.8E-13 86.8 -0.5 165 81-253 7-225 (479)
147 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.3E-11 58.3 7.7 73 174-256 3-79 (90)
148 KOG1995 Conserved Zn-finger pr 98.2 1.7E-06 3.7E-11 73.6 4.8 86 170-256 63-156 (351)
149 KOG0115 RNA-binding protein p5 98.2 4.3E-06 9.3E-11 67.9 6.6 103 134-251 5-111 (275)
150 PF08777 RRM_3: RNA binding mo 98.2 4.1E-06 9E-11 60.4 5.4 59 174-239 2-60 (105)
151 KOG1855 Predicted RNA-binding 98.1 4.3E-06 9.4E-11 72.6 5.4 81 168-249 226-319 (484)
152 COG5175 MOT2 Transcriptional r 98.1 7.6E-06 1.7E-10 68.9 6.4 83 173-256 114-205 (480)
153 PF11608 Limkain-b1: Limkain b 98.0 4.7E-05 1E-09 51.2 7.2 69 82-162 3-76 (90)
154 KOG4849 mRNA cleavage factor I 98.0 7.7E-06 1.7E-10 69.2 3.9 80 171-251 78-159 (498)
155 KOG4849 mRNA cleavage factor I 97.9 1.6E-05 3.5E-10 67.3 5.2 74 77-150 76-151 (498)
156 KOG0128 RNA-binding protein SA 97.9 9.7E-07 2.1E-11 82.7 -2.7 158 81-242 571-735 (881)
157 KOG1996 mRNA splicing factor [ 97.9 4.3E-05 9.2E-10 63.3 6.9 66 187-253 300-366 (378)
158 COG5175 MOT2 Transcriptional r 97.8 2.3E-05 5E-10 66.1 4.9 111 81-193 114-240 (480)
159 KOG1995 Conserved Zn-finger pr 97.8 1.9E-05 4.2E-10 67.3 4.3 84 78-163 63-154 (351)
160 PF08777 RRM_3: RNA binding mo 97.8 5.5E-05 1.2E-09 54.6 5.6 58 82-145 2-59 (105)
161 KOG0129 Predicted RNA-binding 97.8 0.00028 6.2E-09 63.1 10.5 129 171-301 257-405 (520)
162 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00026 5.5E-09 50.3 7.6 78 173-253 6-91 (100)
163 KOG2314 Translation initiation 97.7 0.00011 2.4E-09 66.2 6.9 79 171-251 56-141 (698)
164 KOG4210 Nuclear localization s 97.7 4.7E-05 1E-09 65.1 4.1 83 78-163 181-264 (285)
165 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.9E-09 44.9 5.1 52 174-233 2-53 (53)
166 KOG3152 TBP-binding protein, a 97.5 5.5E-05 1.2E-09 61.6 2.8 73 172-245 73-157 (278)
167 KOG2202 U2 snRNP splicing fact 97.5 4.8E-05 1E-09 62.1 1.7 66 188-254 83-148 (260)
168 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00034 7.3E-09 43.6 4.7 52 82-140 2-53 (53)
169 KOG2416 Acinus (induces apopto 97.4 0.0001 2.3E-09 66.7 3.1 79 170-254 441-522 (718)
170 KOG3152 TBP-binding protein, a 97.4 0.00018 3.9E-09 58.7 3.7 71 80-150 73-155 (278)
171 KOG2314 Translation initiation 97.3 0.0011 2.3E-08 60.1 7.8 78 78-157 55-138 (698)
172 PF08952 DUF1866: Domain of un 97.2 0.0025 5.5E-08 48.1 8.0 79 170-258 24-111 (146)
173 KOG1855 Predicted RNA-binding 97.2 0.00043 9.4E-09 60.5 4.3 68 78-145 228-308 (484)
174 PF08675 RNA_bind: RNA binding 97.0 0.0046 1E-07 41.8 7.0 56 173-238 9-64 (87)
175 KOG0112 Large RNA-binding prot 97.0 0.0003 6.5E-09 66.9 1.6 82 170-253 369-450 (975)
176 PF10309 DUF2414: Protein of u 96.9 0.0066 1.4E-07 38.8 6.7 54 81-143 5-62 (62)
177 PF08675 RNA_bind: RNA binding 96.9 0.0048 1E-07 41.7 6.2 54 83-144 10-63 (87)
178 KOG2253 U1 snRNP complex, subu 96.9 0.00025 5.5E-09 65.3 0.1 146 81-237 40-197 (668)
179 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0035 7.6E-08 44.6 5.9 79 79-160 4-89 (100)
180 PF07576 BRAP2: BRCA1-associat 96.8 0.018 3.9E-07 41.7 9.2 67 81-149 13-80 (110)
181 PF10309 DUF2414: Protein of u 96.7 0.015 3.3E-07 37.2 7.0 55 173-236 5-62 (62)
182 KOG2202 U2 snRNP splicing fact 96.6 0.0011 2.3E-08 54.4 2.1 55 104-161 92-146 (260)
183 KOG2416 Acinus (induces apopto 96.6 0.002 4.3E-08 58.8 3.7 80 77-162 440-521 (718)
184 KOG2193 IGF-II mRNA-binding pr 96.5 0.0016 3.4E-08 57.0 2.6 78 174-258 2-80 (584)
185 KOG1996 mRNA splicing factor [ 96.5 0.0086 1.9E-07 50.1 6.4 65 95-161 300-365 (378)
186 PF07576 BRAP2: BRCA1-associat 96.5 0.046 1E-06 39.6 9.4 69 173-243 13-81 (110)
187 KOG0115 RNA-binding protein p5 96.4 0.014 3E-07 48.0 7.1 61 82-143 32-92 (275)
188 PF15023 DUF4523: Protein of u 96.2 0.016 3.4E-07 43.4 5.9 75 170-253 83-161 (166)
189 PF04847 Calcipressin: Calcipr 96.1 0.016 3.5E-07 46.2 5.9 62 186-254 8-71 (184)
190 PF08952 DUF1866: Domain of un 96.0 0.018 3.8E-07 43.6 5.3 54 97-161 52-105 (146)
191 KOG3671 Actin regulatory prote 96.0 0.096 2.1E-06 47.3 10.5 32 80-111 480-511 (569)
192 KOG2591 c-Mpl binding protein, 95.9 0.029 6.3E-07 51.1 6.9 98 132-248 146-246 (684)
193 KOG2068 MOT2 transcription fac 95.8 0.0045 9.7E-08 52.9 1.7 84 173-257 77-166 (327)
194 KOG4676 Splicing factor, argin 95.8 0.014 3E-07 50.8 4.4 76 174-251 8-86 (479)
195 KOG2135 Proteins containing th 95.5 0.0062 1.3E-07 54.2 1.6 72 176-255 375-447 (526)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.017 3.8E-07 45.8 3.8 71 79-149 5-81 (176)
197 PF15023 DUF4523: Protein of u 95.4 0.059 1.3E-06 40.3 6.1 74 79-162 84-161 (166)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.022 4.7E-07 45.3 4.2 83 172-255 6-99 (176)
199 PF10567 Nab6_mRNP_bdg: RNA-re 95.4 0.51 1.1E-05 39.9 12.2 158 78-237 12-212 (309)
200 PF11767 SET_assoc: Histone ly 95.4 0.14 3E-06 33.3 7.1 55 184-248 11-65 (66)
201 KOG4285 Mitotic phosphoprotein 95.1 0.1 2.2E-06 44.0 7.1 75 172-255 196-271 (350)
202 KOG4574 RNA-binding protein (c 94.9 0.097 2.1E-06 50.2 7.2 76 82-163 299-374 (1007)
203 KOG4574 RNA-binding protein (c 94.8 0.017 3.7E-07 55.1 2.0 73 177-256 302-376 (1007)
204 PF07292 NID: Nmi/IFP 35 domai 94.7 0.076 1.6E-06 36.7 4.6 69 126-195 1-74 (88)
205 KOG2068 MOT2 transcription fac 94.5 0.022 4.8E-07 48.8 2.0 80 82-163 78-163 (327)
206 KOG0804 Cytoplasmic Zn-finger 94.4 0.27 5.8E-06 44.0 8.3 70 172-243 73-142 (493)
207 KOG2253 U1 snRNP complex, subu 94.1 0.06 1.3E-06 50.2 4.0 73 169-251 36-108 (668)
208 KOG0804 Cytoplasmic Zn-finger 93.6 0.28 6.1E-06 43.8 7.1 67 81-149 74-141 (493)
209 PF03880 DbpA: DbpA RNA bindin 92.8 0.52 1.1E-05 31.5 6.0 58 184-251 12-74 (74)
210 KOG1923 Rac1 GTPase effector F 91.7 0.69 1.5E-05 44.3 7.3 15 216-230 604-618 (830)
211 KOG2891 Surface glycoprotein [ 91.0 0.3 6.5E-06 40.8 3.8 129 125-254 77-268 (445)
212 KOG2591 c-Mpl binding protein, 91.0 0.46 9.9E-06 43.7 5.2 58 78-142 172-231 (684)
213 KOG4285 Mitotic phosphoprotein 90.4 0.65 1.4E-05 39.4 5.2 59 83-149 199-257 (350)
214 PF04847 Calcipressin: Calcipr 90.2 0.69 1.5E-05 37.0 5.1 62 94-163 8-71 (184)
215 KOG2318 Uncharacterized conser 90.2 1.1 2.3E-05 41.5 6.9 84 171-255 172-309 (650)
216 PF03880 DbpA: DbpA RNA bindin 89.6 1.6 3.4E-05 29.1 5.8 58 91-159 11-73 (74)
217 KOG1923 Rac1 GTPase effector F 89.1 2.2 4.8E-05 41.0 8.2 11 81-91 385-395 (830)
218 KOG2135 Proteins containing th 88.8 0.22 4.8E-06 44.7 1.5 75 80-163 371-446 (526)
219 PF13689 DUF4154: Domain of un 88.3 3.3 7.2E-05 31.6 7.7 89 186-286 1-89 (145)
220 PF11767 SET_assoc: Histone ly 88.3 2.3 5.1E-05 27.6 5.6 49 91-148 10-58 (66)
221 PF10567 Nab6_mRNP_bdg: RNA-re 85.3 2.1 4.5E-05 36.4 5.2 84 169-253 11-107 (309)
222 KOG4410 5-formyltetrahydrofola 83.6 6.2 0.00013 33.4 7.2 48 173-227 330-378 (396)
223 KOG4672 Uncharacterized conser 83.3 4.1 8.9E-05 36.2 6.3 10 186-195 471-480 (487)
224 KOG4483 Uncharacterized conser 81.9 8.3 0.00018 34.3 7.7 58 170-235 388-446 (528)
225 PRK14548 50S ribosomal protein 81.6 6.7 0.00015 26.9 5.7 58 176-236 23-81 (84)
226 PF14111 DUF4283: Domain of un 81.3 2.5 5.4E-05 32.4 4.1 116 84-208 18-139 (153)
227 KOG2318 Uncharacterized conser 79.7 9.3 0.0002 35.7 7.5 84 78-161 171-306 (650)
228 TIGR03636 L23_arch archaeal ri 79.4 9.5 0.00021 25.7 5.8 59 175-236 15-74 (77)
229 KOG4483 Uncharacterized conser 79.4 6.8 0.00015 34.8 6.3 62 73-141 383-445 (528)
230 KOG4019 Calcineurin-mediated s 78.6 2.3 5E-05 33.4 3.0 43 216-258 51-94 (193)
231 PF07530 PRE_C2HC: Associated 77.7 4.7 0.0001 26.4 3.8 65 188-255 2-66 (68)
232 COG5178 PRP8 U5 snRNP spliceos 76.4 2.7 5.9E-05 42.4 3.4 30 79-108 70-99 (2365)
233 COG5178 PRP8 U5 snRNP spliceos 73.4 3.5 7.7E-05 41.7 3.4 36 82-117 108-145 (2365)
234 PRK14548 50S ribosomal protein 69.8 20 0.00043 24.6 5.5 58 83-143 22-81 (84)
235 TIGR02542 B_forsyth_147 Bacter 68.8 16 0.00034 26.5 4.9 115 89-226 11-129 (145)
236 KOG3424 40S ribosomal protein 67.5 23 0.00049 25.8 5.5 47 184-231 34-84 (132)
237 KOG4410 5-formyltetrahydrofola 67.0 13 0.00028 31.6 4.9 49 80-134 329-378 (396)
238 TIGR03636 L23_arch archaeal ri 61.8 37 0.0008 22.8 5.5 58 83-143 15-74 (77)
239 PTZ00191 60S ribosomal protein 59.3 37 0.0008 25.9 5.7 59 175-236 83-142 (145)
240 PHA03378 EBNA-3B; Provisional 58.6 56 0.0012 31.6 7.8 23 81-103 806-830 (991)
241 PF03468 XS: XS domain; Inter 58.4 21 0.00045 26.2 4.2 40 93-135 29-68 (116)
242 KOG1830 Wiskott Aldrich syndro 56.1 71 0.0015 28.9 7.7 7 244-250 495-501 (518)
243 KOG1985 Vesicle coat complex C 55.2 2.3E+02 0.005 28.3 11.8 19 170-188 292-310 (887)
244 PHA03378 EBNA-3B; Provisional 55.2 1.4E+02 0.003 29.1 9.7 6 84-89 828-833 (991)
245 PF03468 XS: XS domain; Inter 54.6 18 0.00038 26.6 3.3 50 175-228 10-68 (116)
246 KOG2295 C2H2 Zn-finger protein 54.4 2.4 5.3E-05 39.1 -1.5 70 80-149 230-299 (648)
247 smart00596 PRE_C2HC PRE_C2HC d 52.3 29 0.00062 22.8 3.6 64 188-255 2-66 (69)
248 KOG2295 C2H2 Zn-finger protein 51.4 2.3 5E-05 39.3 -2.1 72 172-244 230-301 (648)
249 PRK11901 hypothetical protein; 50.4 35 0.00076 29.8 4.9 61 172-238 244-306 (327)
250 PF11823 DUF3343: Protein of u 50.2 23 0.00051 23.3 3.1 30 217-246 2-31 (73)
251 COG5193 LHP1 La protein, small 47.3 9 0.00019 34.1 0.9 63 79-141 172-244 (438)
252 PF02714 DUF221: Domain of unk 46.1 48 0.001 29.0 5.4 56 126-195 1-56 (325)
253 PF12091 DUF3567: Protein of u 46.0 18 0.0004 24.6 2.1 56 123-200 8-76 (85)
254 PF07292 NID: Nmi/IFP 35 domai 45.8 12 0.00025 26.0 1.2 25 78-102 49-73 (88)
255 PF02714 DUF221: Domain of unk 45.8 24 0.00052 30.9 3.4 37 219-257 1-37 (325)
256 PF15513 DUF4651: Domain of un 45.3 58 0.0013 20.8 4.1 19 188-207 9-27 (62)
257 KOG4213 RNA-binding protein La 43.3 36 0.00077 27.0 3.5 57 81-142 111-169 (205)
258 PRK01178 rps24e 30S ribosomal 43.2 77 0.0017 22.5 5.0 47 184-231 30-80 (99)
259 PTZ00071 40S ribosomal protein 41.9 89 0.0019 23.5 5.3 46 184-230 35-85 (132)
260 COG5193 LHP1 La protein, small 41.2 19 0.0004 32.2 1.9 63 171-234 172-244 (438)
261 KOG4365 Uncharacterized conser 40.6 5.1 0.00011 36.0 -1.5 78 174-253 4-81 (572)
262 PF07530 PRE_C2HC: Associated 40.0 55 0.0012 21.4 3.6 62 96-162 2-64 (68)
263 PRK10905 cell division protein 39.8 74 0.0016 27.8 5.2 60 172-237 246-307 (328)
264 KOG1925 Rac1 GTPase effector F 39.4 30 0.00065 32.0 3.0 24 81-104 306-329 (817)
265 KOG2675 Adenylate cyclase-asso 38.0 21 0.00045 32.3 1.8 14 219-232 453-466 (480)
266 PTZ00191 60S ribosomal protein 36.9 1.3E+02 0.0028 23.0 5.6 57 83-142 83-141 (145)
267 PF14893 PNMA: PNMA 35.1 23 0.00051 31.2 1.6 76 79-161 16-95 (331)
268 KOG4008 rRNA processing protei 35.1 35 0.00076 28.2 2.5 35 77-111 36-70 (261)
269 KOG0156 Cytochrome P450 CYP2 s 34.1 1.3E+02 0.0029 28.2 6.5 66 170-246 29-97 (489)
270 KOG1295 Nonsense-mediated deca 34.1 39 0.00086 30.1 2.8 70 80-149 6-78 (376)
271 PF03439 Spt5-NGN: Early trans 34.0 1.1E+02 0.0023 20.9 4.5 27 215-241 43-69 (84)
272 PRK11901 hypothetical protein; 34.0 3.3E+02 0.0072 24.0 12.3 63 78-145 242-306 (327)
273 COG0445 GidA Flavin-dependent 33.6 2.7E+02 0.0059 26.7 8.2 82 125-209 238-336 (621)
274 KOG1984 Vesicle coat complex C 33.4 2.3E+02 0.0049 28.6 7.9 9 293-301 467-475 (1007)
275 PF01690 PLRV_ORF5: Potato lea 32.9 43 0.00092 30.8 2.9 10 125-134 125-134 (465)
276 PF00403 HMA: Heavy-metal-asso 32.3 1.3E+02 0.0027 18.6 6.4 54 175-235 1-58 (62)
277 PF08734 GYD: GYD domain; Int 31.6 1.8E+02 0.0039 20.1 6.5 47 187-237 22-68 (91)
278 PF11491 DUF3213: Protein of u 31.3 1.3E+02 0.0029 20.4 4.3 66 176-249 3-72 (88)
279 COG5638 Uncharacterized conser 31.3 2.7E+02 0.0058 25.3 7.4 142 77-251 142-295 (622)
280 PF01282 Ribosomal_S24e: Ribos 30.0 1.8E+02 0.004 19.8 5.5 48 183-231 11-62 (84)
281 PF00564 PB1: PB1 domain; Int 29.5 1.3E+02 0.0027 20.0 4.3 63 179-248 16-79 (84)
282 KOG1546 Metacaspase involved i 28.2 4.2E+02 0.0091 23.4 15.7 74 81-163 64-149 (362)
283 PLN02805 D-lactate dehydrogena 28.2 1.2E+02 0.0025 29.2 5.1 50 187-237 280-332 (555)
284 cd06405 PB1_Mekk2_3 The PB1 do 26.7 2E+02 0.0044 19.2 7.3 63 178-249 13-75 (79)
285 PRK10905 cell division protein 26.7 1.4E+02 0.003 26.2 4.8 59 81-144 247-307 (328)
286 KOG4008 rRNA processing protei 26.5 64 0.0014 26.8 2.6 35 170-205 37-71 (261)
287 CHL00030 rpl23 ribosomal prote 26.3 2.3E+02 0.0051 19.8 5.4 35 175-209 20-55 (93)
288 COG0018 ArgS Arginyl-tRNA synt 25.7 3.1E+02 0.0067 26.5 7.4 99 187-300 60-166 (577)
289 smart00666 PB1 PB1 domain. Pho 25.4 2.1E+02 0.0045 18.9 7.1 57 176-237 12-69 (81)
290 PF14893 PNMA: PNMA 25.4 73 0.0016 28.2 3.0 53 172-226 17-72 (331)
291 PF04026 SpoVG: SpoVG; InterP 25.3 1.5E+02 0.0032 20.4 3.9 47 200-253 2-50 (84)
292 PF11411 DNA_ligase_IV: DNA li 25.2 52 0.0011 18.5 1.3 16 91-106 19-34 (36)
293 KOG1984 Vesicle coat complex C 24.8 3.1E+02 0.0068 27.7 7.2 6 189-194 442-447 (1007)
294 PF14111 DUF4283: Domain of un 24.6 79 0.0017 23.9 2.9 67 184-256 28-94 (153)
295 PRK10629 EnvZ/OmpR regulon mod 24.6 3E+02 0.0065 20.5 7.7 70 174-252 36-109 (127)
296 cd02568 PseudoU_synth_PUS1_PUS 24.4 1.7E+02 0.0037 24.5 5.0 115 185-302 22-154 (245)
297 PRK12280 rplW 50S ribosomal pr 24.1 2.9E+02 0.0062 21.6 5.7 35 175-209 23-58 (158)
298 KOG1295 Nonsense-mediated deca 24.0 1E+02 0.0022 27.6 3.6 68 173-241 7-77 (376)
299 COG5353 Uncharacterized protei 23.6 3.5E+02 0.0075 20.9 6.6 56 81-136 87-155 (161)
300 PF10281 Ish1: Putative stress 23.3 77 0.0017 17.8 1.9 18 184-202 3-20 (38)
301 PF00276 Ribosomal_L23: Riboso 22.7 1.4E+02 0.003 20.7 3.5 34 176-209 22-56 (91)
302 PF09770 PAT1: Topoisomerase I 22.6 29 0.00062 34.9 0.0 7 125-131 388-394 (808)
303 TIGR03399 RNA_3prim_cycl RNA 3 22.2 5.5E+02 0.012 22.7 11.5 119 82-224 112-240 (326)
304 KOG4365 Uncharacterized conser 22.1 15 0.00033 33.2 -1.8 66 82-148 4-69 (572)
305 PRK11558 putative ssRNA endonu 21.3 2.2E+02 0.0049 20.1 4.2 49 173-225 27-75 (97)
306 PF09707 Cas_Cas2CT1978: CRISP 21.1 2.9E+02 0.0063 19.0 4.7 48 173-224 25-72 (86)
307 PHA01632 hypothetical protein 21.1 1E+02 0.0022 19.1 2.2 20 176-195 19-38 (64)
308 cd00497 PseudoU_synth_TruA_lik 21.1 1.7E+02 0.0037 24.2 4.3 115 184-302 18-138 (224)
309 KOG2187 tRNA uracil-5-methyltr 21.0 80 0.0017 29.6 2.5 38 216-253 63-100 (534)
310 COG5353 Uncharacterized protei 21.0 4E+02 0.0086 20.5 6.1 54 174-227 88-153 (161)
311 KOG2893 Zn finger protein [Gen 20.9 5E+02 0.011 21.7 8.8 14 181-194 318-331 (341)
312 KOG0862 Synaptobrevin/VAMP-lik 20.9 61 0.0013 26.5 1.5 31 188-226 89-119 (216)
313 COG5470 Uncharacterized conser 20.5 2.6E+02 0.0056 19.7 4.3 20 121-140 51-70 (96)
314 PRK13259 regulatory protein Sp 20.2 2E+02 0.0042 20.3 3.7 48 200-254 2-51 (94)
315 cd00874 RNA_Cyclase_Class_II R 20.2 6.1E+02 0.013 22.4 10.2 118 82-224 110-238 (326)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.9e-36 Score=263.62 Aligned_cols=175 Identities=25% Similarity=0.462 Sum_probs=159.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++|++.|++..+ .++.|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceee
Confidence 445678999999999999999999999999999999999999999999999999999999999999999999 678999
Q ss_pred eeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
+.++.... ......+|||+||+.++++++|+++|+ +||.|++++|+.|..+++++|||||+|.+.++|++|++.|
T Consensus 181 V~~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 181 VSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eecccccc----cccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 99886432 223467899999999999999999998 9999999999999989999999999999999999999999
Q ss_pred CCceecc--eeeEEccCCCCCCCC
Q 021950 237 NGVFCST--RPMRIGPATNKKTVS 258 (305)
Q Consensus 237 ~~~~i~g--~~i~v~~~~~~~~~~ 258 (305)
|+..+.+ +.|+|.+++.+....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccCCCceeEEEEECCcccccc
Confidence 9999865 789999998765543
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-35 Score=236.59 Aligned_cols=172 Identities=29% Similarity=0.532 Sum_probs=159.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
.....|||+.|...++.++|++.|..||+|.+++|++|..|+++|||+||.|.+.++|++||..|+|+.| ++|.||.+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecc
Confidence 3367799999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ccCCCCCCC------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021950 159 WASFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 159 ~~~~~~~~~------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~ 226 (305)
|+.++..+. .....+++|||+|+...++|++|++.|+ .||.|.+|+|..+ +|||||+|++.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecch
Confidence 999875432 2335688999999999999999999999 9999999999988 79999999999
Q ss_pred HHHHHHHHHhCCceecceeeEEccCCCCCCCCC
Q 021950 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (305)
Q Consensus 227 ~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~~~ 259 (305)
|+|.+||..+|+.+|+|..++|.|.+.......
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 999999999999999999999999998776644
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.9e-34 Score=260.85 Aligned_cols=176 Identities=18% Similarity=0.370 Sum_probs=157.9
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||+||+.++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|||..+ .|+.|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 67888887
Q ss_pred ccCCCCCC-------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 159 WASFGAGE-------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 159 ~~~~~~~~-------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
+....... .......++|||+||+.++++++|+++|+ .||.|.+++|..|..+++++|||||+|++.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 65432111 11223457999999999999999999999 99999999999998899999999999999999999
Q ss_pred HHHHhCCceecceeeEEccCCCCCCC
Q 021950 232 AMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 232 a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
|++.||+..|+|+.|+|.++......
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999998865444
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.2e-33 Score=247.18 Aligned_cols=169 Identities=27% Similarity=0.494 Sum_probs=154.4
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
...+|||+|||.++|+++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|++.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999999999 678999998
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021950 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
+... .......+|||+||+.++++++|+++|+ .||.|..+++..+..++.++|||||+|++.++|.+|++.|||.
T Consensus 80 a~~~----~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 80 ARPS----SDSIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred eccc----ccccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 8643 2233467899999999999999999999 9999999999999878899999999999999999999999999
Q ss_pred eecc--eeeEEccCCCCC
Q 021950 240 FCST--RPMRIGPATNKK 255 (305)
Q Consensus 240 ~i~g--~~i~v~~~~~~~ 255 (305)
.+.| +.|+|.|+....
T Consensus 155 ~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPS 172 (352)
T ss_pred ccCCCceeEEEEECCCCC
Confidence 9877 678898886544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.5e-33 Score=246.16 Aligned_cols=176 Identities=26% Similarity=0.440 Sum_probs=156.8
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
..++|||+||+.++++++|+++|+.||.|..+++..+..++.++|||||+|.+.++|.+|++.|+|..+.+....+++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999977778888888
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 021950 160 ASFGAGEK------------------------------------------------------------------------ 167 (305)
Q Consensus 160 ~~~~~~~~------------------------------------------------------------------------ 167 (305)
+.......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 75332000
Q ss_pred ----------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 168 ----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 168 ----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
.....+.+|||+||+.++++++|+++|+ +||.|.+++|+.|..+|.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011233699999999999999999999 99999999999999899999999999999999999
Q ss_pred HHHHhCCceecceeeEEccCCCCCC
Q 021950 232 AMTEMNGVFCSTRPMRIGPATNKKT 256 (305)
Q Consensus 232 a~~~l~~~~i~g~~i~v~~~~~~~~ 256 (305)
|+..|||..|+||.|+|+|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999988754
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.1e-33 Score=259.78 Aligned_cols=184 Identities=30% Similarity=0.492 Sum_probs=161.0
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCC
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~ 162 (305)
+|||+||+.++||++|+++|++||.|.+|+|.+|+.+++++|||||+|.+.++|++|++.+++..+ .++.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988 689999999865
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021950 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 163 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~ 242 (305)
.... ......+|||+||+.++++++|+++|+ +||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..++
T Consensus 80 ~~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 80 DPSL--RRSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred cccc--cccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 4322 223456899999999999999999999 99999999999885 7889999999999999999999999999999
Q ss_pred ceeeEEccCCCCCCCCCCCCCCCcceEEeCC
Q 021950 243 TRPMRIGPATNKKTVSGQQQYPKGTFLVVGT 273 (305)
Q Consensus 243 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (305)
|+.|.|.....+..... ......+.+++++
T Consensus 156 ~~~i~v~~~~~~~~~~~-~~~~~~~~l~V~n 185 (562)
T TIGR01628 156 DKEVYVGRFIKKHEREA-APLKKFTNLYVKN 185 (562)
T ss_pred CceEEEecccccccccc-ccccCCCeEEEeC
Confidence 99999987766555431 1223445566665
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=231.75 Aligned_cols=179 Identities=22% Similarity=0.452 Sum_probs=160.3
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCC-CCCCCCCce
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-TPMPNGEQN 154 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~~~~~~~~ 154 (305)
..+.+.-+||||-+|..++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+|+. +.+.|....
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456778999999999999999999999999999999999999999999999999999999999999855 567788889
Q ss_pred eeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 155 FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
|.+.+++.+ +..-...++|||+-|+..++|.|++++|+ +||.|++|.|.+|. .+.+||||||+|.+.|.|..|++
T Consensus 109 vqvk~Ad~E---~er~~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 109 VQVKYADGE---RERIVEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eeecccchh---hhccccchhhhhhhccccccHHHHHHHHH-hhCccchhhheecc-cccccceeEEEEehHHHHHHHHH
Confidence 999988743 22224578999999999999999999999 99999999999996 89999999999999999999999
Q ss_pred HhCCce-ecc--eeeEEccCCCCCCCCC
Q 021950 235 EMNGVF-CST--RPMRIGPATNKKTVSG 259 (305)
Q Consensus 235 ~l~~~~-i~g--~~i~v~~~~~~~~~~~ 259 (305)
.|||.. +.| ..|.|+|+..++.+..
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchH
Confidence 999976 554 6899999998776643
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=8.4e-31 Score=240.72 Aligned_cols=172 Identities=24% Similarity=0.420 Sum_probs=153.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
....++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .++|..+ .++.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~--~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQML--LGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEE--CCeeeEE
Confidence 455789999999999999999999999999999999999999999999999999999999999 4899998 6777877
Q ss_pred eccCCCCCC--------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHH
Q 021950 158 NWASFGAGE--------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (305)
Q Consensus 158 ~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A 229 (305)
.++...... ........+|||+||+..+++++|+++|+ .||.|..|.+..+..+|.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 765432111 01112368999999999999999999999 999999999999988899999999999999999
Q ss_pred HHHHHHhCCceecceeeEEccCCC
Q 021950 230 LRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 230 ~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
.+|+..|+|..|.|+.|+|.|+..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999764
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=206.73 Aligned_cols=174 Identities=27% Similarity=0.445 Sum_probs=158.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
++..+.|.|..||..+|+|+|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||.++ ..+.|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEE
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999 6789999
Q ss_pred eccCCCCC------------------------------------------------------------------------
Q 021950 158 NWASFGAG------------------------------------------------------------------------ 165 (305)
Q Consensus 158 ~~~~~~~~------------------------------------------------------------------------ 165 (305)
+++.....
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 98876400
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 021950 166 ---------------------------------------------------------------------------EKRDD 170 (305)
Q Consensus 166 ---------------------------------------------------------------------------~~~~~ 170 (305)
-....
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence 00011
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
...++|||.||..+.+|..|.++|. .||.|..|+|++|..+++.||||||.+.+-++|..|+..|||..+++|.|.|.|
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 3478999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021950 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
..++
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7765
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=3.6e-30 Score=235.25 Aligned_cols=195 Identities=15% Similarity=0.229 Sum_probs=154.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||+|||.+++|++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++.|++..+.. ++.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccc
Confidence 45689999999999999999999999999999999999 689999999999999999999999999998842 5566665
Q ss_pred ccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEE-EecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKV-VIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
++. ..++|||+|||.++++++|.++|+ +++. +.++.+ ..+...++++|||||+|++.++|.+|++.|
T Consensus 134 ~S~----------~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 134 ISV----------DNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred ccc----------cCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 542 257899999999999999999998 8754 444333 233345678999999999999999999988
Q ss_pred CC--ceecceeeEEccCCCCCCCCCCCCCCCcceEEeCCcchhhhHHHHhhcc
Q 021950 237 NG--VFCSTRPMRIGPATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFI 287 (305)
Q Consensus 237 ~~--~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (305)
+. ..++|+.|.|+|+.+...... ........+++++....-..+.|+++|
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F 254 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSF 254 (578)
T ss_pred hccceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHH
Confidence 64 458999999999987654432 223445678888743332233344333
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=8.4e-30 Score=239.40 Aligned_cols=173 Identities=23% Similarity=0.432 Sum_probs=153.1
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
...+|||+||+.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.++|..+ .++.+.+..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEec
Confidence 45689999999999999999999999999999999985 688999999999999999999999999998 667787765
Q ss_pred cCCCCCC-CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021950 160 ASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 160 ~~~~~~~-~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
....... .......++|||+||+.++++++|+++|+ .||.|.++.+..+. +|.++|||||+|++.++|.+|++.|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 5433222 22344567899999999999999999999 99999999999885 788999999999999999999999999
Q ss_pred ceec----ceeeEEccCCCCCCC
Q 021950 239 VFCS----TRPMRIGPATNKKTV 257 (305)
Q Consensus 239 ~~i~----g~~i~v~~~~~~~~~ 257 (305)
..+. |+.|.|.++..+.++
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred cEecccccceeeEeecccChhhh
Confidence 9999 999999998776554
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=5.9e-31 Score=198.84 Aligned_cols=176 Identities=27% Similarity=0.475 Sum_probs=159.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
+.+...+||||||+..++++.|+++|-+.|.|.++++.+|+.+...+|||||+|.++++|+.|++.|+...+ .|+.|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeE
Confidence 456678999999999999999999999999999999999999999999999999999999999999998888 889999
Q ss_pred eeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021950 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~-i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
++.+.. .......+.+|||+||+.+++|..|.+.|+ .||.+.. -.++++..+|.++|||||.|.+.+.+.+|+..
T Consensus 83 v~kas~---~~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 83 VNKASA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred EEeccc---ccccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 998872 223334468999999999999999999999 9999765 47888888999999999999999999999999
Q ss_pred hCCceecceeeEEccCCCCCCCC
Q 021950 236 MNGVFCSTRPMRIGPATNKKTVS 258 (305)
Q Consensus 236 l~~~~i~g~~i~v~~~~~~~~~~ 258 (305)
+||..+++|.|+|+|+..+...+
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99999999999999988766553
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=215.10 Aligned_cols=202 Identities=14% Similarity=0.226 Sum_probs=166.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...+-||||.||.++.|++|..+|++.|.|-+++++.|+.+|.+||||||.|.+.++|++|++.||+.+|. .|+.|.++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999997 48888887
Q ss_pred ccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID-RLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
.+. .+++|||+|||.++++++|.+.|+ +.++ |..|.+... .+..+++|||||+|+|...|..|.++|
T Consensus 160 ~Sv----------an~RLFiG~IPK~k~keeIlee~~-kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV----------ANCRLFIGNIPKTKKKEEILEEMK-KVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee----------ecceeEeccCCccccHHHHHHHHH-hhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 664 358999999999999999999998 6665 666655544 335688999999999999999999887
Q ss_pred CC--ceecceeeEEccCCCCCCCCCCCCCCCcceEEeCCcchh----hhHHHHhhccceeeEEE
Q 021950 237 NG--VFCSTRPMRIGPATNKKTVSGQQQYPKGTFLVVGTGFCL----QIKFKFKYFIGWLIFII 294 (305)
Q Consensus 237 ~~--~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~g~~~~~~ 294 (305)
-. ..++|..+.|+|+.+....... ...+-..|++.+.... .+++.|.+| |.+-+|.
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVk 290 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVK 290 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEee
Confidence 43 4489999999999998887543 4455567888874333 335555555 5554444
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=2.3e-28 Score=227.62 Aligned_cols=170 Identities=17% Similarity=0.265 Sum_probs=141.3
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhc------------CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHT------------GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 143 (305)
......++|||||||.++|+++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..|| +|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 445677999999999999999999999975 22333333 455789999999999999999 69
Q ss_pred CCCCCCCCCceeeeeccCCCCC-------------------------CCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcC
Q 021950 144 NGTPMPNGEQNFRLNWASFGAG-------------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198 (305)
Q Consensus 144 ~g~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~ 198 (305)
+|..+ .++.|+|.+...... .........+|||+||+..+++++|+++|+ .|
T Consensus 243 ~g~~~--~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~ 319 (509)
T TIGR01642 243 DSIIY--SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SF 319 (509)
T ss_pred CCeEe--eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hc
Confidence 99988 567888765432110 000123457899999999999999999999 99
Q ss_pred CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCC
Q 021950 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 199 G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~ 255 (305)
|.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999998899999999999999999999999999999999999999986543
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.3e-27 Score=219.60 Aligned_cols=167 Identities=18% Similarity=0.230 Sum_probs=142.5
Q ss_pred CCCCceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+||+. .+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..| .|+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l--~g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKL--FGKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEE
Confidence 34568999999997 69999999999999999999999864 58999999999999999999999999 678898
Q ss_pred eeccCCCCCCC---------------------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC--e
Q 021950 157 LNWASFGAGEK---------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPS--T 201 (305)
Q Consensus 157 ~~~~~~~~~~~---------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~--i 201 (305)
|.++....... ....++.+|||+|||.++++++|+++|+ .||. |
T Consensus 345 v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~-~~G~~~i 423 (481)
T TIGR01649 345 VCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFA-ENGVHKV 423 (481)
T ss_pred EEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHH-hcCCccc
Confidence 88775431100 0012467899999999999999999998 9998 8
Q ss_pred eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee------eEEccCCCC
Q 021950 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP------MRIGPATNK 254 (305)
Q Consensus 202 ~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~------i~v~~~~~~ 254 (305)
..+++.... ++ .+++|||+|++.++|.+|+..||+..|+|+. |+|+|++++
T Consensus 424 ~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 424 KKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred eEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 888886543 33 5789999999999999999999999999985 999999864
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=6.9e-28 Score=220.33 Aligned_cols=170 Identities=18% Similarity=0.295 Sum_probs=141.9
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEE-eCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIR-NKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
...++|||+|||.++++++|.+.|++++. +.++.+.. ...+++++|||||+|.+.++|..|++.|+...+...++.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34688999999999999999999999864 44444433 23456789999999999999999999887554444689999
Q ss_pred eeccCCCCCCC-CCCCCCceEEEcCCCcCCCHHHHHHHHhhcC--CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021950 157 LNWASFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 157 ~~~~~~~~~~~-~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~--G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
++|+....... ......++|||+||+.++++++|+++|+ .| |.|++|+++ ++||||+|++.++|.+|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 99998654332 2234467899999999999999999999 99 999999875 459999999999999999
Q ss_pred HHhCCceecceeeEEccCCCCCCC
Q 021950 234 TEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 234 ~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
+.||+..|+|+.|+|+|+++....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999999886543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.7e-27 Score=218.82 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=138.2
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh--CCCCCCCCCceeeee
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF--NGTPMPNGEQNFRLN 158 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~~~~~~~~~i~~~ 158 (305)
+++|||+|||.++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+ .|+.|++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEE
Confidence 589999999999999999999999999999999864 469999999999999999875 55666 78999999
Q ss_pred ccCCCCCCCCC--------CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHH
Q 021950 159 WASFGAGEKRD--------DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (305)
Q Consensus 159 ~~~~~~~~~~~--------~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (305)
|+......+.. .....+|+|+||++++++++|+++|+ .||.|.+|.|..+. + +++|||+|.+.++|.
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~--~--~~~afVef~~~~~A~ 148 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKN--N--VFQALVEFESVNSAQ 148 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecC--C--ceEEEEEECCHHHHH
Confidence 98754322211 12234799999999999999999999 99999999998763 2 468999999999999
Q ss_pred HHHHHhCCceecc--eeeEEccCCCCC
Q 021950 231 RAMTEMNGVFCST--RPMRIGPATNKK 255 (305)
Q Consensus 231 ~a~~~l~~~~i~g--~~i~v~~~~~~~ 255 (305)
+|++.|||..|.| +.|+|.|++...
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCC
Confidence 9999999999954 689999988643
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=208.55 Aligned_cols=219 Identities=26% Similarity=0.387 Sum_probs=176.0
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
.-.|.|+|||+.+...+|..+|+.||.|.+|.|.+.+ .|+-.|||||.|....+|.+|++.+||..| .||.|-++|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 6689999999999999999999999999999999776 456669999999999999999999999999 7899999999
Q ss_pred CCCC---------------------------------------------C-------------C----------------
Q 021950 161 SFGA---------------------------------------------G-------------E---------------- 166 (305)
Q Consensus 161 ~~~~---------------------------------------------~-------------~---------------- 166 (305)
-... . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 5430 0 0
Q ss_pred ------------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 167 ------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 167 ------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
+.+.....+|||+||++++++++|.++|+ +||.|.++.|+.++.|+.++|.|||.|.+..+|.+||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 00012347999999999999999999999 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceecceeeEEccCCCCCCCCC-------CCCCCCcceEEeC------------CcchhhhHHHHhhccce
Q 021950 235 EM-----NG-VFCSTRPMRIGPATNKKTVSG-------QQQYPKGTFLVVG------------TGFCLQIKFKFKYFIGW 289 (305)
Q Consensus 235 ~l-----~~-~~i~g~~i~v~~~~~~~~~~~-------~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~g~ 289 (305)
.. .| ..|+||.|+|..+-.+..... .....+ ++|++. .|.+..+|++-..+...
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gk-rNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~ 431 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGK-RNLYLAREGLIRDGTPAAEGLSATDMAKRERIAER 431 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCc-cceeeeccCccccCChhhcccchhhHHHHHHHHHH
Confidence 76 23 568999999999877655432 111122 244433 26666777777766655
Q ss_pred eeEEEEEeeeeccCC
Q 021950 290 LIFIIIFFNISTSST 304 (305)
Q Consensus 290 ~~~~~~~~~~~~~~~ 304 (305)
....+..=||..|+|
T Consensus 432 k~k~lknpnlhlSrt 446 (678)
T KOG0127|consen 432 KRKKLKNPNLHLSRT 446 (678)
T ss_pred HHHhhcCCceeeehh
Confidence 566666667777765
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=7.6e-27 Score=217.41 Aligned_cols=172 Identities=19% Similarity=0.332 Sum_probs=146.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++.|+|..| .++.|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 67888888
Q ss_pred ccCCCCCCC------------------------CCCCCCceEEEcCCCcC--C--------CHHHHHHHHhhcCCCeeEE
Q 021950 159 WASFGAGEK------------------------RDDTPDHTIFVGDLAAD--V--------TDYMLQETFRARYPSTKGA 204 (305)
Q Consensus 159 ~~~~~~~~~------------------------~~~~~~~~l~v~nlp~~--~--------~~~~l~~~f~~~~G~i~~i 204 (305)
++....... ....++.+|+|.|+... + ..++|+++|+ +||.|..|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 875321110 01235678999998542 1 2368999998 99999999
Q ss_pred EEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 205 KVVIDR---LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 205 ~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
.|..+. .++...|+|||+|++.++|.+|+..|||..|+|+.|.|.|...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 998652 3345679999999999999999999999999999999999764
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=201.64 Aligned_cols=173 Identities=19% Similarity=0.281 Sum_probs=151.9
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEEeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
+...++|||||||.+.++++|.+.+++.++ |++|.+..+.. ..++||||||+|.+...|..|..+|.--.|...+..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 456789999999999999999999999987 78887777654 3689999999999999999999998766666679999
Q ss_pred eeeccCCCCCCC-CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 156 RLNWASFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 156 ~~~~~~~~~~~~-~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
.|+|+....... ......+.|||+||+.++|+|.|+++|+ +||.|++|+.++| ||||.|.++++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 999999765433 2345567899999999999999999999 9999999998855 99999999999999999
Q ss_pred HhCCceecceeeEEccCCCCCCCCC
Q 021950 235 EMNGVFCSTRPMRIGPATNKKTVSG 259 (305)
Q Consensus 235 ~l~~~~i~g~~i~v~~~~~~~~~~~ 259 (305)
.+||++|+|..|.|.++++..+.+.
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HhcCceecCceEEEEecCChhhhcc
Confidence 9999999999999999999766644
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.7e-27 Score=204.08 Aligned_cols=175 Identities=19% Similarity=0.315 Sum_probs=156.1
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
..||||++||++++.++|.++|+.+|.|..+.++.++.++.++||+||.|.-.+++.+|+..+.+..+ .|+.+++..+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceecccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999988 6788888887
Q ss_pred CCCCCCC----------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccE
Q 021950 161 SFGAGEK----------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (305)
Q Consensus 161 ~~~~~~~----------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~ 218 (305)
..+...+ .-..+..+|.|+|||+.+.+.+|..+|+ .||.|.+|.|.+....+. .||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~dgkl-cGF 160 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKDGKL-CGF 160 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCCCCc-cce
Confidence 7653322 0023478899999999999999999999 999999999998764444 599
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCCCC
Q 021950 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (305)
Q Consensus 219 afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~~~ 259 (305)
|||+|.+..+|.+|++.+|+..|+||.|.|+|+-.+.....
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 99999999999999999999999999999999988776644
No 22
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.6e-27 Score=187.92 Aligned_cols=177 Identities=24% Similarity=0.446 Sum_probs=159.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCC-CCCCCCceeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT-PMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-~~~~~~~~i~~ 157 (305)
.+.++||||.|...-.|||++.+|..||.|.+|.+.+.. .|.+||||||.|.+..+|..||..|+|. .+.|....+.+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999986 6999999999999999999999999886 56677777888
Q ss_pred eccCCC--------------------------------------------------------------------------
Q 021950 158 NWASFG-------------------------------------------------------------------------- 163 (305)
Q Consensus 158 ~~~~~~-------------------------------------------------------------------------- 163 (305)
.+++.+
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 888664
Q ss_pred --------------------------------------------------------------------------------
Q 021950 164 -------------------------------------------------------------------------------- 163 (305)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (305)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred --------------------CCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEe
Q 021950 164 --------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223 (305)
Q Consensus 164 --------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f 223 (305)
.....+...+++|||..||.++.+.||.+.|. .||.|.+.++..|+.|+.+|.|+||.|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeEec
Confidence 00012225689999999999999999999999 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 224 ~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
++..+|..||..|||..|+-++|+|...++++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998887654
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=2.6e-27 Score=191.51 Aligned_cols=152 Identities=21% Similarity=0.437 Sum_probs=140.3
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
.+|||||||.++++.+|+.+|++||.|.+|.|+++ ||||..++...|+.|+..|+|..| .|..|+|..++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 47999999999999999999999999999999986 999999999999999999999999 66888887776
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
.+ ...+.+|+|+||...++.++|+..|+ +||.|.+++|+ ++|+||.|+..++|..|++.|++.++
T Consensus 73 sK------sk~stkl~vgNis~tctn~ElRa~fe-~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 73 SK------SKASTKLHVGNISPTCTNQELRAKFE-KYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred cc------CCCccccccCCCCccccCHHHhhhhc-ccCCceeeeee--------cceeEEEEeeccchHHHHhccccccc
Confidence 43 55688999999999999999999999 99999999998 45999999999999999999999999
Q ss_pred cceeeEEccCCCCCCCC
Q 021950 242 STRPMRIGPATNKKTVS 258 (305)
Q Consensus 242 ~g~~i~v~~~~~~~~~~ 258 (305)
.|++++|..+.++-+..
T Consensus 138 ~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTA 154 (346)
T ss_pred ccceeeeeeeccccccC
Confidence 99999999998876654
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.1e-26 Score=183.55 Aligned_cols=181 Identities=31% Similarity=0.518 Sum_probs=143.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
+++.++||||||+.++||+.|..+|++.|.|..++|+.| .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467799999999999999999999999999999999876 2334
Q ss_pred eccCCCCCC-CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 158 NWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
.|+...... +........+||+.|..+++.|+|++.|. +||+|.+++|++|..|+++||||||.|.+.++|++||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 444433222 12223366799999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCceecceeeEEccCCCCCCCCC----------CCCCCCcceEEeCC---cchhhhHHHHhhccceeeEEEEE
Q 021950 237 NGVFCSTRPMRIGPATNKKTVSG----------QQQYPKGTFLVVGT---GFCLQIKFKFKYFIGWLIFIIIF 296 (305)
Q Consensus 237 ~~~~i~g~~i~v~~~~~~~~~~~----------~~~~~~~~~~~~g~---~~~~~~~~~~~~~~g~~~~~~~~ 296 (305)
||..|++|.|+-.|+.+|..... -+...+....++|+ +...+++.+.---+|-..-|..|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF 197 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF 197 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe
Confidence 99999999999999988764432 23334555666775 34555565555555555555544
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=197.05 Aligned_cols=197 Identities=24% Similarity=0.365 Sum_probs=161.5
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
..|||| +++|+.+|.+.|+.+|.|.++++.+|. + +.|||||.|.+.++|++|++++|...+ .|+.+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 368999 999999999999999999999999997 5 999999999999999999999999999 78999999998
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
.... .|||.||+.+++..+|.+.|+ .||+|.+|++..+. +| ++|| ||+|++.++|.+|+..+||..+
T Consensus 74 rd~~---------~~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 74 RDPS---------LVFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred cCCc---------eeeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 6532 299999999999999999999 99999999999996 55 8999 9999999999999999999999
Q ss_pred cceeeEEccCCCCCCCCCCC--CCCCcceEEeCCcchhhhHHHHhhccceeeEEEEEeee
Q 021950 242 STRPMRIGPATNKKTVSGQQ--QYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNI 299 (305)
Q Consensus 242 ~g~~i~v~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 299 (305)
.|+.|.|.....+..+.... ....-++.++.+.........+..++.....|...+=|
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~ 200 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVM 200 (369)
T ss_pred CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEe
Confidence 99999999888876654211 11222344444433333345555555555444444433
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=191.85 Aligned_cols=172 Identities=18% Similarity=0.383 Sum_probs=156.4
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
.++||||.+.+++.||.|+..|..||.|++|.+..|..|++.||||||+|+-.|.|..|++.+||..+ +||.|++.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999 8899999876
Q ss_pred CCCCCCC-------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021950 161 SFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 161 ~~~~~~~-------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
....... .+...-++|||..+..+++|+||+.+|+ .||+|.+|.+.++...+..+||+||+|.+..+-..|+
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE-AFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHH-hhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 5432221 2224567899999999999999999999 9999999999999988899999999999999999999
Q ss_pred HHhCCceecceeeEEccCCCCC
Q 021950 234 TEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 234 ~~l~~~~i~g~~i~v~~~~~~~ 255 (305)
..||-..++|..|+|..+-...
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 9999999999999998865433
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.3e-26 Score=191.80 Aligned_cols=176 Identities=23% Similarity=0.413 Sum_probs=159.5
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCC-CCCCCCceeeee
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT-PMPNGEQNFRLN 158 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-~~~~~~~~i~~~ 158 (305)
+.++||||.|+..+||.+|+++|++||.|++|.|.+|. .+.+||||||.|.+.+.|..|++.|||. .++|+..++-|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 37899999999999999999999999999999999996 6999999999999999999999999986 688889999999
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 021950 159 WASFG--------------------------------------------------------------------------- 163 (305)
Q Consensus 159 ~~~~~--------------------------------------------------------------------------- 163 (305)
|++..
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 99765
Q ss_pred --------------------------------------------------------------------------------
Q 021950 164 -------------------------------------------------------------------------------- 163 (305)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (305)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred -----------------------------------------------------CCCCCCCCCCceEEEcCCCcCCCHHHH
Q 021950 164 -----------------------------------------------------AGEKRDDTPDHTIFVGDLAADVTDYML 190 (305)
Q Consensus 164 -----------------------------------------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l 190 (305)
.....+...+..|||.+||.++-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 000011145778999999999999999
Q ss_pred HHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 191 ~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
...|. .||.|.+.++..|+.||-++.|+||.|++..+|.+||..|||..|++++++|.....+.+.
T Consensus 442 ~~~f~-pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 442 IATFQ-PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHhc-cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99998 9999999999999999999999999999999999999999999999999999998776554
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=2e-26 Score=201.43 Aligned_cols=208 Identities=20% Similarity=0.338 Sum_probs=175.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
...+.++||+--|...++..+|+++|+..|.|.+|+++.|+.+++++|.|||+|.+.+..-.|+ .|.|+.+ .|.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 4567899999999999999999999999999999999999999999999999999999999999 7899999 567766
Q ss_pred eeccCCCCCC----------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021950 157 LNWASFGAGE----------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 157 ~~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~ 226 (305)
+......... +.-..+-..|||+||.+++++++|+.+|+ .||.|+.|.+..|.++|.++|||||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ife-pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFE-PFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhcc-CcccceeeeeccccccccccCcceEEEecH
Confidence 6544322100 11122333499999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceecceeeEEccCCCCCCCCC------CCCCCCcceEEeCCcchhhhHHHHhhccc
Q 021950 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG------QQQYPKGTFLVVGTGFCLQIKFKFKYFIG 288 (305)
Q Consensus 227 ~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 288 (305)
++|.+|+..|||.+|.||.|+|.....+-.... +.....+..+..|.++..|++++|+++.|
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~ 398 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKG 398 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCC
Confidence 999999999999999999999998777655542 22222445667777878999999999987
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.2e-24 Score=200.01 Aligned_cols=166 Identities=19% Similarity=0.375 Sum_probs=141.5
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
.++|||+||+..+|+++|+++|+.||.|.+|.+..+..+|.++|||||+|.+.++|.+|++.|+|..| .++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEc
Confidence 68999999999999999999999999999999999998899999999999999999999999999888 6789999885
Q ss_pred CCCCC------------------------------------C--------------------------------------
Q 021950 161 SFGAG------------------------------------E-------------------------------------- 166 (305)
Q Consensus 161 ~~~~~------------------------------------~-------------------------------------- 166 (305)
..... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 32100 0
Q ss_pred ------------CCCCCCCceEEEcCCCcCCC----------HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeC
Q 021950 167 ------------KRDDTPDHTIFVGDLAADVT----------DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (305)
Q Consensus 167 ------------~~~~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~ 224 (305)
........+|+|.||-...+ .+||++.|+ +||.|..|.|.. ....|++||+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~----~~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDT----KNSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeC----CCCceeEEEEEC
Confidence 00113467889999844433 368999998 999999998863 344799999999
Q ss_pred CHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 225 DESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 225 ~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
+.++|.+|++.|||..|+|+.|.|.|...
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999999999999999754
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=177.44 Aligned_cols=176 Identities=24% Similarity=0.428 Sum_probs=152.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
.+.++||||+|+++++++.|+++|.+||+|.+|.+++|+.+++++||+||+|++.+...+++.. .-..| .++.|...
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k 80 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPK 80 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCccccce
Confidence 3788999999999999999999999999999999999999999999999999999999888744 33334 56777776
Q ss_pred ccCCCCCCC--CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 159 WASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
.+..+.... .......+|||++|+.++++++++++|+ +||.|..+.++.|..+...+||+||.|.+.+++.+++. .
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe-~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFE-QFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhh-ccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 666543322 2223477999999999999999999999 99999999999999999999999999999999999976 4
Q ss_pred CCceecceeeEEccCCCCCCCCC
Q 021950 237 NGVFCSTRPMRIGPATNKKTVSG 259 (305)
Q Consensus 237 ~~~~i~g~~i~v~~~~~~~~~~~ 259 (305)
+-+.|+|+.+.|..+.++.....
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ceeeecCceeeEeeccchhhccc
Confidence 77889999999999999877643
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=3.7e-22 Score=183.17 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||+||+.++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.||+..+ +|+.|+|.
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~ 279 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVG 279 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEE
Confidence 3457999999999999999999999999999999999998899999999999999999999999999998 78899988
Q ss_pred ccCC
Q 021950 159 WASF 162 (305)
Q Consensus 159 ~~~~ 162 (305)
++..
T Consensus 280 kAi~ 283 (612)
T TIGR01645 280 KCVT 283 (612)
T ss_pred ecCC
Confidence 7754
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=9e-23 Score=183.39 Aligned_cols=172 Identities=20% Similarity=0.354 Sum_probs=146.1
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCC---CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
++|||.||++++|.++|...|...|.|.++.|...+.. -.|.|||||+|.+.++|.+|++.|+|..+ .|+.+.+.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL--DGHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee--cCceEEEE
Confidence 33999999999999999999999999999988876532 13569999999999999999999999999 45666666
Q ss_pred ccCCCC-----CCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021950 159 WASFGA-----GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 159 ~~~~~~-----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
++.... .........++|+|+|||+..+..+++++|. .||.|.+|+|......+..+|||||+|-+..+|.+|+
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred eccCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 665211 1112223367999999999999999999999 9999999999987556777999999999999999999
Q ss_pred HHhCCceecceeeEEccCCCCCC
Q 021950 234 TEMNGVFCSTRPMRIGPATNKKT 256 (305)
Q Consensus 234 ~~l~~~~i~g~~i~v~~~~~~~~ 256 (305)
.+|...-+.||+|.+.|++....
T Consensus 673 ~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 673 DALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HhhcccceechhhheehhccchH
Confidence 99999999999999999987543
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.1e-21 Score=170.28 Aligned_cols=168 Identities=24% Similarity=0.468 Sum_probs=146.5
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCC
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~ 162 (305)
.|||.||+.+++..+|.++|+.||.|.+|++..+. +| ++|| ||+|+++++|++|++.+||..+ .++.+.+.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeeccc
Confidence 39999999999999999999999999999999996 35 9999 9999999999999999999999 567777765554
Q ss_pred CCCCC----CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021950 163 GAGEK----RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 163 ~~~~~----~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
+.... .....-..++|.|+..+++++.|..+|. .||.|.++.++.+. .+++++|+||+|++.++|..|+..|++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccC
Confidence 32211 1223456799999999999999999998 99999999999986 677999999999999999999999999
Q ss_pred ceecceeeEEccCCCCCCC
Q 021950 239 VFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 239 ~~i~g~~i~v~~~~~~~~~ 257 (305)
..+++..+.|..+..+.+.
T Consensus 231 ~~~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSER 249 (369)
T ss_pred CcCCccceeecccccchhh
Confidence 9999999999988774443
No 34
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.9e-19 Score=141.99 Aligned_cols=161 Identities=21% Similarity=0.421 Sum_probs=140.7
Q ss_pred CceEEEcCCCcccCHHHHhH----hhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 81 IRTLWIGDLQYWMDETYLNT----CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+ .|+.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhh
Confidence 34999999999999999999 999999999988765 567899999999999999999999999999 788899
Q ss_pred eeccCCCCCC----------------------------------------------CCCCCCCceEEEcCCCcCCCHHHH
Q 021950 157 LNWASFGAGE----------------------------------------------KRDDTPDHTIFVGDLAADVTDYML 190 (305)
Q Consensus 157 ~~~~~~~~~~----------------------------------------------~~~~~~~~~l~v~nlp~~~~~~~l 190 (305)
+.++...... .....+...||+.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8888754110 011346778999999999999999
Q ss_pred HHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ceeeEEccCC
Q 021950 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (305)
Q Consensus 191 ~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~-g~~i~v~~~~ 252 (305)
..+|. .|...++++++... .+.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 164 ~~lf~-qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFE-QFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHh-hCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999 99999999998765 789999999999999999999999986 8889998875
No 35
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.82 E-value=4.2e-19 Score=138.91 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=127.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEe-CCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC-CCc
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQ 153 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~-~~~ 153 (305)
.+...-+||||.+||.++...+|+.+|..|-..+.+.+... +...-.+-+|||.|.+..+|..|++.|||..++- .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 34567899999999999999999999999977777766543 3223456799999999999999999999998863 466
Q ss_pred eeeeeccCCCCCCC------------------------------------------------------------------
Q 021950 154 NFRLNWASFGAGEK------------------------------------------------------------------ 167 (305)
Q Consensus 154 ~i~~~~~~~~~~~~------------------------------------------------------------------ 167 (305)
.++++.++.....+
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 67776665430000
Q ss_pred ----------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 168 ----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 168 ----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
.....+.+|||.||..+++|++|+.+|+ .|-....++|... +| ...||++|++.+.|..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GG--MPVAFADFEEIEQATD 263 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CC--cceEeecHHHHHHHHH
Confidence 0013467899999999999999999999 9998877777533 34 5679999999999999
Q ss_pred HHHHhCCcee
Q 021950 232 AMTEMNGVFC 241 (305)
Q Consensus 232 a~~~l~~~~i 241 (305)
|+..|.|..|
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999998776
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=5.1e-20 Score=161.60 Aligned_cols=165 Identities=18% Similarity=0.349 Sum_probs=131.3
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
+.+.||||||..++++++|+.+|+.||.|..|.+.+|..+|+++||+||+|.+.++|++|++.|||..| .|+.|+|..
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~ 354 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSV 354 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEE
Confidence 344499999999999999999999999999999999988999999999999999999999999999777 778888754
Q ss_pred cCCCCCC--------------------------------------------------------------------CCCC-
Q 021950 160 ASFGAGE--------------------------------------------------------------------KRDD- 170 (305)
Q Consensus 160 ~~~~~~~--------------------------------------------------------------------~~~~- 170 (305)
....... ....
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 4322000 0000
Q ss_pred ------CCCceEEEcCC--CcCCC--------HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 171 ------TPDHTIFVGDL--AADVT--------DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 171 ------~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
.++.++.+.|+ |...| .+|+.+.++ +||.|..|.+..+ +.|+.||.|.+.+.|..|++
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~ 508 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVK 508 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHH
Confidence 23445666665 11111 267888888 9999976666333 24899999999999999999
Q ss_pred HhCCceecceeeEEccCC
Q 021950 235 EMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 235 ~l~~~~i~g~~i~v~~~~ 252 (305)
+|||.+|.|+.|++.|-.
T Consensus 509 alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 509 ALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHhhhhhccceeEEEEee
Confidence 999999999999999854
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=3.3e-19 Score=136.75 Aligned_cols=87 Identities=33% Similarity=0.637 Sum_probs=81.4
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
....++|||+||++++++++|+++|+ +||.|.+++|+.|..+++++|||||+|++.++|++|++.||+..|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34578999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021950 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
+++.+...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876543
No 38
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.4e-18 Score=151.77 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=92.7
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|++|+|+.|..+++++|||||+|.+.++|.+|++.|++..|.++.|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 3445678999999999999999999999 999999999999998999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCCcceEEeCCcchh----hhHHHHhhcc
Q 021950 248 IGPATNKKTVSGQQQYPKGTFLVVGTGFCL----QIKFKFKYFI 287 (305)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~ 287 (305)
|.|++..... .....+++++.... ++.+.|.+|+
T Consensus 181 V~~a~p~~~~------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 181 VSYARPGGES------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred eecccccccc------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 9998764322 22345677753322 3344454444
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=6.2e-18 Score=128.64 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=125.2
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||||||.++.+.+|+++|-+||.|..|.+... ...-.||||+|++..+|+.||..-+|..+ .+..++|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccccccc--CcceEEEE
Confidence 46789999999999999999999999999999987543 23456999999999999999998899999 55777777
Q ss_pred ccCCCCCCC----------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcc
Q 021950 159 WASFGAGEK----------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK 216 (305)
Q Consensus 159 ~~~~~~~~~----------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~ 216 (305)
++....... ........|.|.+||.+-+++||+.++. +-|.|....+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 765431110 1112345799999999999999999998 9999999888776
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceec
Q 021950 217 GYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~~~~i~ 242 (305)
|++.|+|...|+-+-|+..|....+.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 47899999999999999999887753
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=7.8e-18 Score=146.14 Aligned_cols=166 Identities=17% Similarity=0.266 Sum_probs=132.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
....-|-+.+||+++|++||.++|+.++ |+++.+.+ .+|+..|-|||+|.+++++++|+++ +...+ ..+.|+|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEEE
Confidence 3455688899999999999999999985 67765555 4699999999999999999999965 77777 67888886
Q ss_pred ccCCCCCCC-------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHH
Q 021950 159 WASFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQL 230 (305)
Q Consensus 159 ~~~~~~~~~-------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~-i~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (305)
.+.....+. ........|.+++||+.++++||.++|+ -.-.|.. |.++.+. .+++.|-|||+|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 664332211 1224667899999999999999999998 5555554 4455554 7889999999999999999
Q ss_pred HHHHHhCCceecceeeEEccCCC
Q 021950 231 RAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 231 ~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
+|+.. |...|+-|-|.|..+..
T Consensus 160 ~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 160 IALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHH-HHHhhccceEEeehhHH
Confidence 99986 77889999999976654
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=2.9e-17 Score=136.60 Aligned_cols=172 Identities=16% Similarity=0.284 Sum_probs=139.8
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcE--------EEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
......|||+|||.++|.+++.++|++||.|. .|++.++. .|..+|-|++.|...+++..|+..|++..+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~- 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL- 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc-
Confidence 34456699999999999999999999999764 37888886 499999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCCC----------------------------------CCCCCCCceEEEcCCC----cCCC-----
Q 021950 150 NGEQNFRLNWASFGAGE----------------------------------KRDDTPDHTIFVGDLA----ADVT----- 186 (305)
Q Consensus 150 ~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~~~l~v~nlp----~~~~----- 186 (305)
+|+.|+|..|.+.... .......++|.+.|+= ...+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 7899999888654100 1112346789999871 1222
Q ss_pred --HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 187 --DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 187 --~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
.++|++.++ +||.|.+|.|.- ..+.|.+.|.|.+.++|..|++.|+|+.++||.|..+....+...
T Consensus 288 dlkedl~eec~-K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 288 DLKEDLTEECE-KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHH-HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 367888898 999999998863 345789999999999999999999999999999999876654443
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=2.4e-17 Score=140.78 Aligned_cols=168 Identities=17% Similarity=0.303 Sum_probs=141.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhh-hcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
...+.+||.|||+++.+.+|+++|. +.|+|+.|.+..|. +|+++|||.|+|+++|.+++|++.|+...+ .++.+.+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~v 118 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVV 118 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEE
Confidence 4456799999999999999999996 67899999999996 799999999999999999999999999888 5666665
Q ss_pred eccCCC-------------------------------------------CCC------C---------------------
Q 021950 158 NWASFG-------------------------------------------AGE------K--------------------- 167 (305)
Q Consensus 158 ~~~~~~-------------------------------------------~~~------~--------------------- 167 (305)
.-.... ... +
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 433221 000 0
Q ss_pred -----------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 168 -----------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 168 -----------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
-......++||+||.+.+....|++.|. .-|.|+.+.+-.|+ .|.++|+|.++|.+.-+|..||..|
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhh
Confidence 0113456899999999999999999998 99999999999997 5688999999999999999999999
Q ss_pred CCceecceeeEEccC
Q 021950 237 NGVFCSTRPMRIGPA 251 (305)
Q Consensus 237 ~~~~i~g~~i~v~~~ 251 (305)
++.-+.+++..+...
T Consensus 277 ~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLD 291 (608)
T ss_pred ccCCCccccceeecc
Confidence 987677777777664
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1e-17 Score=128.50 Aligned_cols=84 Identities=31% Similarity=0.542 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
....++|||+||+.++|+++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++.|++..| .++.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 45577999999999999999999999999999999999999999999999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021950 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
+|+..+
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 998754
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=144.01 Aligned_cols=165 Identities=17% Similarity=0.269 Sum_probs=131.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...+.++|+|||..+..++|..+|..||.|..+.+... | --++|+|.+..+|+.|.+.|....+ ....+.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 44578999999999999999999999999998844322 1 1499999999999999999888777 44455554
Q ss_pred ccCCCCCC---------------------------------CC------------CC-CCCceEEEcCCCcCCCHHHHHH
Q 021950 159 WASFGAGE---------------------------------KR------------DD-TPDHTIFVGDLAADVTDYMLQE 192 (305)
Q Consensus 159 ~~~~~~~~---------------------------------~~------------~~-~~~~~l~v~nlp~~~~~~~l~~ 192 (305)
|+...... .. .. ...++|||.||+++++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 44321000 00 00 1122399999999999999999
Q ss_pred HHhhcCCCeeEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 193 TFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 193 ~f~~~~G~i~~i~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
+|. .+|.|.++.|...+.. -.|.|||||+|.+.++|.+|++.|+|+.|+|+.|.|+++.
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999 9999999988766422 1356999999999999999999999999999999999998
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.5e-17 Score=131.47 Aligned_cols=151 Identities=19% Similarity=0.362 Sum_probs=126.6
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
..||||+|++.+.+.+|+.+|..||.+.++.+.. ||+||+|.+..+|..|+..+++..+.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4699999999999999999999999998887753 58999999999999999999999996533 7777776
Q ss_pred CCCCC----------------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC
Q 021950 162 FGAGE----------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (305)
Q Consensus 162 ~~~~~----------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~ 225 (305)
..... .......+.+.|.|+...+.+.+|.+.|. .+|.+....+ ..+++||+|++
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 32110 01123466789999999999999999999 9999955444 26689999999
Q ss_pred HHHHHHHHHHhCCceecceeeEEccC
Q 021950 226 ESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 226 ~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
.++|.+|+..|++..+.|+.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999543
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.5e-16 Score=107.18 Aligned_cols=70 Identities=34% Similarity=0.659 Sum_probs=67.2
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
|||+|||.++++++|+++|+ .||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999 9999999999998 5889999999999999999999999999999999986
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.3e-16 Score=130.47 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=139.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
+....++|||..+..+.+++||+..|+.||+|..|.+.++...+..+||+|++|.+...-..|+..+|-..+ +|..++
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLR 283 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLR 283 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEe
Confidence 346678999999999999999999999999999999999998889999999999999999999999888777 788888
Q ss_pred eeccCCC-------------------------------------------------------------------------
Q 021950 157 LNWASFG------------------------------------------------------------------------- 163 (305)
Q Consensus 157 ~~~~~~~------------------------------------------------------------------------- 163 (305)
+..+-..
T Consensus 284 VGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pg 363 (544)
T KOG0124|consen 284 VGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPG 363 (544)
T ss_pred cccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCc
Confidence 8766443
Q ss_pred -------------------------------------CCCC------------------------------------CCC
Q 021950 164 -------------------------------------AGEK------------------------------------RDD 170 (305)
Q Consensus 164 -------------------------------------~~~~------------------------------------~~~ 170 (305)
..++ -..
T Consensus 364 vi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~ 443 (544)
T KOG0124|consen 364 VITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRK 443 (544)
T ss_pred eeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcc
Confidence 0000 001
Q ss_pred CCCceEEEcCC--CcCCCH---HHHHHHHhhcCCCeeEEEEEecCCCCCc----ccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 171 TPDHTIFVGDL--AADVTD---YMLQETFRARYPSTKGAKVVIDRLTGRT----KGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 171 ~~~~~l~v~nl--p~~~~~---~~l~~~f~~~~G~i~~i~i~~~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
..++.+.++|+ |.+++| .+|++.+. +||.|.++.|...+.++.. ----||+|+...++.+|+..|+|+.|
T Consensus 444 ~~S~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfF 522 (544)
T KOG0124|consen 444 QESTVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFF 522 (544)
T ss_pred ccCcEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhcccee
Confidence 35677888886 556654 68999998 9999999988766533311 11369999999999999999999999
Q ss_pred cceeeEEccC
Q 021950 242 STRPMRIGPA 251 (305)
Q Consensus 242 ~g~~i~v~~~ 251 (305)
+||++.....
T Consensus 523 gGr~VvAE~Y 532 (544)
T KOG0124|consen 523 GGRKVVAEVY 532 (544)
T ss_pred cCceeehhhh
Confidence 9999987653
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=9.4e-16 Score=130.18 Aligned_cols=161 Identities=16% Similarity=0.259 Sum_probs=134.2
Q ss_pred CceEEEcCCC-cccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 81 IRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 81 ~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
...|.|.||. ..+|.+-|..+|.-||+|.+|+|..++.+ -|+|++.+...|..|++.|+|..+ .++.|++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhccee--cCceEEEee
Confidence 6789999996 77899999999999999999999998643 699999999999999999999999 679999988
Q ss_pred cCCCCCCC-------------------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEe
Q 021950 160 ASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI 208 (305)
Q Consensus 160 ~~~~~~~~-------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~ 208 (305)
++.....- ....++.+|++.|+|.+++||+|++.|.+.-|.|+..++.
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff- 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF- 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-
Confidence 87642110 0114677999999999999999999998444444544443
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce-eeEEccCCC
Q 021950 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-PMRIGPATN 253 (305)
Q Consensus 209 ~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~-~i~v~~~~~ 253 (305)
++.+.+|++.+++.|+|..|+-.+|++.+++. .++|+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 33367999999999999999999999999765 999999875
No 49
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-16 Score=125.59 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=80.0
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
...++|.|.||+.+++|++|+++|. .||.|.++.+.+|++||.++|||||.|.+.++|.+||+.|||.-++.-.|+|.|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3568899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021950 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9985
No 50
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6.2e-16 Score=127.85 Aligned_cols=89 Identities=18% Similarity=0.380 Sum_probs=80.1
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
......++|+|.|||+.+.|-||+.+|+ +||.|.+|.|+.+. . -+||||||+|++.+||++|.++|||..|.||+|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~-kfG~VldVEIIfNE-R-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFE-KFGKVLDVEIIFNE-R-GSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHH-hhCceeeEEEEecc-C-CCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3345578999999999999999999999 99999999999984 3 3599999999999999999999999999999999
Q ss_pred EccCCCCCCCCC
Q 021950 248 IGPATNKKTVSG 259 (305)
Q Consensus 248 v~~~~~~~~~~~ 259 (305)
|..+..+...++
T Consensus 168 Vn~ATarV~n~K 179 (376)
T KOG0125|consen 168 VNNATARVHNKK 179 (376)
T ss_pred EeccchhhccCC
Confidence 999998766544
No 51
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=125.05 Aligned_cols=82 Identities=34% Similarity=0.472 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
+..-++||||+|++++..|+|+++|+ +||+|++..|+.|+.+|++||||||+|.+.++|.+|++.- +-.|+||+.-|+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFe-qfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFE-QFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHH-HhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccc
Confidence 34457899999999999999999999 9999999999999999999999999999999999999863 366999999998
Q ss_pred cCCC
Q 021950 250 PATN 253 (305)
Q Consensus 250 ~~~~ 253 (305)
.+.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8765
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.66 E-value=3.7e-15 Score=126.58 Aligned_cols=167 Identities=15% Similarity=0.282 Sum_probs=136.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
..-..++|+|+-..++-|-|..+|++||.|..|.-... .+ .--|+|+|.+.+.|..|...|+|+.|..+...++++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-nn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-NN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-cc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 34456888999999999999999999999987754432 11 124899999999999999999999998888889988
Q ss_pred ccCCCCCC---------------------------------------------------------CCCCC--CCceEEEc
Q 021950 159 WASFGAGE---------------------------------------------------------KRDDT--PDHTIFVG 179 (305)
Q Consensus 159 ~~~~~~~~---------------------------------------------------------~~~~~--~~~~l~v~ 179 (305)
+++..... ..... .+..|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 87543000 00001 14678888
Q ss_pred CCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCC
Q 021950 180 DLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 180 nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~ 255 (305)
||..+ +|.+.|..+|. .||.|.+|+|+.++ +.-|+|+|.+...|.-|++.|+|..+.|++|+|.+++-..
T Consensus 304 nln~~~VT~d~LftlFg-vYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFG-VYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred cCchhccchhHHHHHHh-hhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 88765 89999999999 99999999999886 4569999999999999999999999999999999988643
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.4e-17 Score=126.43 Aligned_cols=109 Identities=22% Similarity=0.436 Sum_probs=90.8
Q ss_pred HHHhCCCCCCCCCceeeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEE
Q 021950 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219 (305)
Q Consensus 140 ~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~a 219 (305)
+..||.+++..+.. -+.+|.. ....+..|||||||+++||.||..+|+ +||+|+.|.+++|..||+++|||
T Consensus 10 i~~lne~Elq~g~~-~~~SWH~-------~YkdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 10 IQKLNERELQLGIA-DKKSWHQ-------EYKDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred HHHhhHHhhccccc-cccchhh-------hcccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceE
Confidence 44556655543222 2455553 234478999999999999999999999 99999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 220 fV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
|+.|++..+..-|+..|||..|.||.|+|+........
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeecccccCC
Confidence 99999999999999999999999999999987665544
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.5e-16 Score=122.87 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
..++.++|-|.||+.++++++|+++|..||.|..+.+.+|+.||.++|||||.|.+.++|.+||+.|||.-+ ...-++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999998 568899
Q ss_pred eeccCCC
Q 021950 157 LNWASFG 163 (305)
Q Consensus 157 ~~~~~~~ 163 (305)
+.|++..
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998753
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.3e-15 Score=102.58 Aligned_cols=70 Identities=34% Similarity=0.669 Sum_probs=65.0
Q ss_pred EEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 84 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|++|++.++|..+ .++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 799999999999999999999999999999998 5789999999999999999999999999998 556553
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=2.4e-15 Score=101.39 Aligned_cols=70 Identities=24% Similarity=0.556 Sum_probs=65.0
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
|+|+|||.++++++|+++|+ .||.|..+++..++. +..+++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999 999999999999975 89999999999999999999999999999999985
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.63 E-value=1.2e-14 Score=124.60 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=67.9
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
..++|+|+|||+++|+..|++-|. .||.|.++.|+ ++|+++| .|.|.+.++|++|+..|+|..++||.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfr-e~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFR-EIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHH-hccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 467899999999999999999998 99999999994 3577776 99999999999999999999999999999873
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1e-15 Score=109.62 Aligned_cols=82 Identities=22% Similarity=0.505 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
-..+++||||||...++|++|+++|+++|.|..|.+-.|+.+....|||||+|-+.++|..|++.++|..+ ..+.|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999 6788888
Q ss_pred eccC
Q 021950 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
+|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8764
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=7.8e-15 Score=125.93 Aligned_cols=151 Identities=23% Similarity=0.368 Sum_probs=119.8
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
.++|||+||+.++|+++|+++|..||.+..+.+..++.++.++|||||+|.+.++|..|++.++|..+ .++.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999 6788888885
Q ss_pred C----CCCCC----------------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEE
Q 021950 161 S----FGAGE----------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220 (305)
Q Consensus 161 ~----~~~~~----------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~af 220 (305)
. ..... .........+++.+++..++..++...|. .+|.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 3 11111 11224567899999999999999999998 999997777665543333343444
Q ss_pred EEeCCHHHHHHHHH
Q 021950 221 VRFGDESEQLRAMT 234 (305)
Q Consensus 221 V~f~~~~~A~~a~~ 234 (305)
+.+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~~ 285 (306)
T COG0724 272 VGNEASKDALESNS 285 (306)
T ss_pred cchhHHHhhhhhhc
Confidence 44444444444443
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=115.64 Aligned_cols=107 Identities=28% Similarity=0.379 Sum_probs=92.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
....+|||+||+..++++.|.++|- +.|.|.++++.+|..++..+|||||+|.+.|+|+-|++.||...+.||.|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4478999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceEEeCCcchhhhHHHH
Q 021950 251 ATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKF 283 (305)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 283 (305)
+... +.....+.++|+|+....-+...|
T Consensus 86 as~~-----~~nl~vganlfvgNLd~~vDe~~L 113 (203)
T KOG0131|consen 86 ASAH-----QKNLDVGANLFVGNLDPEVDEKLL 113 (203)
T ss_pred cccc-----cccccccccccccccCcchhHHHH
Confidence 8722 223466688999986554443333
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=108.83 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=76.4
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
+++|||+||.+.++||+|.++|+ ++|.|..|.+-.|+.+...=|||||+|.+.++|..|++-++|..++.+.|+|+|.-
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 68999999999999999999999 99999999999998888889999999999999999999999999999999999965
Q ss_pred C
Q 021950 253 N 253 (305)
Q Consensus 253 ~ 253 (305)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.8e-15 Score=131.13 Aligned_cols=174 Identities=17% Similarity=0.373 Sum_probs=136.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
.......+||++|+...+++++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+ +++.+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lv 362 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLV 362 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh--cCceeE
Confidence 345678899999999999999999999999999999999998999999999999999999999999999998 666666
Q ss_pred eeccCCCCCCC--------------------CCCCCCceEEEcCC--CcCC-CH-------HHHHHHHhhcCCCeeEEEE
Q 021950 157 LNWASFGAGEK--------------------RDDTPDHTIFVGDL--AADV-TD-------YMLQETFRARYPSTKGAKV 206 (305)
Q Consensus 157 ~~~~~~~~~~~--------------------~~~~~~~~l~v~nl--p~~~-~~-------~~l~~~f~~~~G~i~~i~i 206 (305)
+..+......- ....++..|.+.|+ +.++ ++ |+++..+. +||.|..|.|
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~i 441 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEI 441 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEec
Confidence 66654331110 11122333444443 1111 11 56777787 9999999999
Q ss_pred EecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 207 VIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 207 ~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
.++.. ..-..|--||+|.+.+++++|..+|+|..+.||.|...|...
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 87721 223466789999999999999999999999999999998654
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=114.62 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=74.0
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
..++|||+||+..+++.||..+|. .||.|.+|.|..++ .|||||+|++..+|..|+..|+|..|+|..|+|+.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 468999999999999999999999 99999999998876 899999999999999999999999999999999998
Q ss_pred CCCCC
Q 021950 252 TNKKT 256 (305)
Q Consensus 252 ~~~~~ 256 (305)
+....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 77654
No 64
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.9e-15 Score=120.12 Aligned_cols=87 Identities=23% Similarity=0.435 Sum_probs=81.6
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
+.....|.|-.||...|+|||+.+|. ..|+|++|++++|+-+|.+-||+||.|.+.++|++|+..|||..+..+.|+|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~-SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhh-cccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34456788999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021950 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
|+++....
T Consensus 117 yARPSs~~ 124 (360)
T KOG0145|consen 117 YARPSSDS 124 (360)
T ss_pred eccCChhh
Confidence 99987655
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=119.51 Aligned_cols=82 Identities=27% Similarity=0.473 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
+...++||||+|++++..++|+++|++||+|++..|+.|+.+|++|||+||+|++.+.|.+|++. -.-.| .||...+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piI--dGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPII--DGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcc--ccccccc
Confidence 45568899999999999999999999999999999999999999999999999999999999975 33345 4566666
Q ss_pred eccCC
Q 021950 158 NWASF 162 (305)
Q Consensus 158 ~~~~~ 162 (305)
+.+..
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 66654
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.3e-15 Score=121.47 Aligned_cols=89 Identities=25% Similarity=0.484 Sum_probs=82.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
....+-+||||+-|+++++|.+|+..|+ .||.|+.|+++.|..||+++|||||+|++..+...|.+..+|..|+|+.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 4457789999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021950 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|++-..+...
T Consensus 175 VDvERgRTvk 184 (335)
T KOG0113|consen 175 VDVERGRTVK 184 (335)
T ss_pred EEeccccccc
Confidence 9997665444
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=120.04 Aligned_cols=87 Identities=21% Similarity=0.395 Sum_probs=77.7
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
...+..++|+|+|||+...|.||+.+|++||.|.+|.|+.+. .-|||||||+|++.+||++|.++|+|..+ .||.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV--EGRKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee--eceEE
Confidence 344566889999999999999999999999999999999863 56899999999999999999999999999 67999
Q ss_pred eeeccCCCCCC
Q 021950 156 RLNWASFGAGE 166 (305)
Q Consensus 156 ~~~~~~~~~~~ 166 (305)
+|+.+..+...
T Consensus 167 EVn~ATarV~n 177 (376)
T KOG0125|consen 167 EVNNATARVHN 177 (376)
T ss_pred EEeccchhhcc
Confidence 99999866433
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1e-14 Score=119.71 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=71.7
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
.++|||+||++.+++++|+++|+ .||.|++|.|..+.. .+|||||+|++.++|..|+. |+|..|+|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999 999999999998853 47899999999999999995 99999999999999987
Q ss_pred CCC
Q 021950 253 NKK 255 (305)
Q Consensus 253 ~~~ 255 (305)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.6e-14 Score=97.26 Aligned_cols=70 Identities=34% Similarity=0.608 Sum_probs=62.8
Q ss_pred EEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 84 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
|||+|||.++++++|+++|+.+|.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++..+ .|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999988888 556553
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=110.11 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++||||||+..+++.||+..|..||.+.+++|...+ .|||||+|++..+|+.|+..|+|..| .+..|+|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 346899999999999999999999999999999998765 47999999999999999999999999 56677776
Q ss_pred ccCCC
Q 021950 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
.+.-.
T Consensus 81 ~S~G~ 85 (195)
T KOG0107|consen 81 LSTGR 85 (195)
T ss_pred eecCC
Confidence 66543
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.3e-14 Score=98.08 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
.....++.|||+|||+++|.|+..++|. +||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+.++.+.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3445678999999999999999999998 99999999997654 3489999999999999999999999999999999
Q ss_pred EccCCCCCC
Q 021950 248 IGPATNKKT 256 (305)
Q Consensus 248 v~~~~~~~~ 256 (305)
|-|..+-..
T Consensus 89 vlyyq~~~~ 97 (124)
T KOG0114|consen 89 VLYYQPEDA 97 (124)
T ss_pred EEecCHHHH
Confidence 999776443
No 72
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-13 Score=120.34 Aligned_cols=198 Identities=19% Similarity=0.307 Sum_probs=135.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCC-C--CCccc---eEEEEEcCHHHHHHHHHHhCCCCCCC
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-T--GQIEG---YGFIEFISRAGAERVLQTFNGTPMPN 150 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~--~~~~g---~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (305)
...-+++||||+||++++|+.|...|..||.+ .+.+..... . --.+| |+|+.|+++..+..-+.++.. ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 34567899999999999999999999999985 333332111 1 13456 999999999999888876432 11
Q ss_pred CCceeeee-----------------ccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCC
Q 021950 151 GEQNFRLN-----------------WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213 (305)
Q Consensus 151 ~~~~i~~~-----------------~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~ 213 (305)
.+..+++. .+..-......-.+.+|||||+||.-++.++|..+|++.||.|..+.|-.|.+-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 12222222 2222122234447889999999999999999999999899999999999998889
Q ss_pred CcccEEEEEeCCHHHHHHHHHH----hCCceecceeeEEccCCCCCCC----CCCCCCCCcceEEeCCcchhhh
Q 021950 214 RTKGYGFVRFGDESEQLRAMTE----MNGVFCSTRPMRIGPATNKKTV----SGQQQYPKGTFLVVGTGFCLQI 279 (305)
Q Consensus 214 ~~~g~afV~f~~~~~A~~a~~~----l~~~~i~g~~i~v~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 279 (305)
..+|-|-|+|.+..+..+||.+ |+...| .++|.|+..--.+.. ....-....+-+|+.+..|+|.
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPYv~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QY 483 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPYVMEDQLCDECGGRRCGGQFAPFFCRNATCFQY 483 (520)
T ss_pred CCCCcceeeecccHHHHHHHhhheEEEecccc-ceeeeecceeccccchhhhcCeeccCccCCcccCCccHHhh
Confidence 9999999999999999999974 111122 235555533211000 0111112334567777777776
No 73
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=7.2e-15 Score=106.28 Aligned_cols=88 Identities=23% Similarity=0.331 Sum_probs=81.5
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
.....+.|||.++..+.+|++|.+.|. .||+|+.|++..|..+|..+|||+|+|++.++|++|+..+||..+.|..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 345578999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021950 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
+|+--+...
T Consensus 147 Dw~Fv~gp~ 155 (170)
T KOG0130|consen 147 DWCFVKGPE 155 (170)
T ss_pred EEEEecCCc
Confidence 998655443
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=8e-15 Score=113.77 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
..-..|.|-||-+.++.++|+.+|+ +||.|-+|.|..|..|+.++|||||.|.+..+|++|+++|+|..++|+.|+|.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFe-kYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFE-KYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHH-HhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3456799999999999999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 021950 251 ATNKKT 256 (305)
Q Consensus 251 ~~~~~~ 256 (305)
++-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 765443
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.6e-14 Score=124.32 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceecceee
Q 021950 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE--SEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~i~g~~i 246 (305)
......+||||||.++++++||+.+|. .||.|.+|.|++. +| ||||||+|.+. +++.+|+..|||..+.||.|
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 344568999999999999999999999 9999999999944 66 99999999987 78999999999999999999
Q ss_pred EEccCCCCC
Q 021950 247 RIGPATNKK 255 (305)
Q Consensus 247 ~v~~~~~~~ 255 (305)
+|..+++..
T Consensus 81 KVNKAKP~Y 89 (759)
T PLN03213 81 RLEKAKEHY 89 (759)
T ss_pred EEeeccHHH
Confidence 999998843
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=1.1e-13 Score=93.22 Aligned_cols=72 Identities=36% Similarity=0.696 Sum_probs=67.4
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
+|+|+||+.++++++|+++|+ .||.|.++.+..+. +.++++|||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999998 99999999998775 6778999999999999999999999999999999874
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=2.5e-14 Score=126.86 Aligned_cols=83 Identities=31% Similarity=0.550 Sum_probs=80.2
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
+.+||||+++++++++|..+|+ ..|.|.+++++.|+++|+.+||||++|.+.++|.+|++.|||.+++||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 021950 254 KKTV 257 (305)
Q Consensus 254 ~~~~ 257 (305)
...+
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6654
No 78
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=118.09 Aligned_cols=169 Identities=14% Similarity=0.207 Sum_probs=130.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhc----CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
...-.|-+++||+++++.++.++|..- |..+.+.++... +|+..|-|||.|..+++|..|+.+ +...| +.|.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH--hHHH
Confidence 445667889999999999999999632 345667666654 689999999999999999999976 55555 5555
Q ss_pred eeeeccCCC---------------------------CCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC-eeE--E
Q 021950 155 FRLNWASFG---------------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKG--A 204 (305)
Q Consensus 155 i~~~~~~~~---------------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~--i 204 (305)
|++-++... ...-.......+|.+++||++.+.|||..+|. .|-. |.. |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhccccee
Confidence 665444321 00001223467899999999999999999998 7755 333 7
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
+++.+. .|+..|-|||+|.+.|+|..|....|++...+|.|.|.-+.-
T Consensus 314 Hmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 314 HMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 777774 789999999999999999999999999888999999976543
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.3e-14 Score=115.03 Aligned_cols=76 Identities=18% Similarity=0.339 Sum_probs=69.7
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
.++|||+||++++|+++|+++|+.||.|.+|.|..++. .+|||||+|.+.++|+.|+ .|+|..| .++.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998853 5689999999999999999 5899999 7899999988
Q ss_pred CC
Q 021950 161 SF 162 (305)
Q Consensus 161 ~~ 162 (305)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 63
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=1.5e-14 Score=128.18 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=77.7
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
+.|||||+|+++++++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|+|.++ .++.++++|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88999999997
Q ss_pred CC
Q 021950 162 FG 163 (305)
Q Consensus 162 ~~ 163 (305)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 65
No 81
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1.1e-13 Score=92.83 Aligned_cols=71 Identities=34% Similarity=0.653 Sum_probs=67.1
Q ss_pred EcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 178 v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
|+||+..+++++|+++|+ .||.|.++.+..+..++.++|+|||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999998 99999999999987778999999999999999999999999999999999874
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.3e-15 Score=114.43 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
.++.-|||||||.++||.||.-.|++||+|++|.+++|+.||+|+||||+.|++..+...|+..|||..| .+|.|+|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 78999998
Q ss_pred ccC
Q 021950 159 WAS 161 (305)
Q Consensus 159 ~~~ 161 (305)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 654
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7e-14 Score=124.73 Aligned_cols=171 Identities=21% Similarity=0.371 Sum_probs=136.2
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhc-----------CC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHT-----------GE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 144 (305)
.....+.+||++++..++++.+..+|..- |. +..+.+... +.|||++|.+.++|..++ .++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~-~~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM-ALD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh-ccc
Confidence 45567889999999999999999998654 33 566666554 359999999999999998 557
Q ss_pred CCCCCCCCceeeeeccCCC-------------------CCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEE
Q 021950 145 GTPMPNGEQNFRLNWASFG-------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (305)
Q Consensus 145 g~~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~ 205 (305)
+..+ .++.+++...... ............++|++|+..+++.++++++. .||.+....
T Consensus 244 ~~~f--~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~-~fg~lk~f~ 320 (500)
T KOG0120|consen 244 GIIF--EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD-SFGPLKAFR 320 (500)
T ss_pred chhh--CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH-hcccchhhe
Confidence 7665 3344443222111 01112234567899999999999999999998 999999999
Q ss_pred EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
++.|..+|.++||||.+|.+...+..|+..|||..++++.|.|..+-.....
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 9999999999999999999999999999999999999999999987665443
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.50 E-value=4.4e-12 Score=106.93 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=132.4
Q ss_pred CCCCCCceEEEcCCC-cccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 76 GQPGEIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
......+.++|-+|. ..++.+.|.++|..||.|..|++++.+. |-|.|++.|....++|+..|++..+ .|..
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~l--fG~k 354 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPL--FGGK 354 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCcc--ccce
Confidence 444567899999998 7889999999999999999999998763 5799999999999999999999998 5666
Q ss_pred eeeeccCCCCC---------------------------------CCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC-
Q 021950 155 FRLNWASFGAG---------------------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS- 200 (305)
Q Consensus 155 i~~~~~~~~~~---------------------------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~- 200 (305)
+.+..++.... ......++++|+.-|.|..+|||.|.++|. .-+.
T Consensus 355 l~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n-ek~v~ 433 (494)
T KOG1456|consen 355 LNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN-EKDVP 433 (494)
T ss_pred EEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh-hcCCC
Confidence 66665544311 112336789999999999999999999998 4443
Q ss_pred eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce------eeEEccCCCC
Q 021950 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR------PMRIGPATNK 254 (305)
Q Consensus 201 i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~------~i~v~~~~~~ 254 (305)
-.++++..-+ +.+ ..-++++|++.++|..||..||...|.+. .|+..|+.++
T Consensus 434 ~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 434 PTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred cceEEeeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 3455555443 333 34589999999999999999998888653 4666666554
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-14 Score=112.70 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=81.5
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
..++|||++|..+++|.-|...|- .||.|..|.+..|-++++.+|||||+|...|+|..|+..||+.++.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 468999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 021950 252 TNKKTVS 258 (305)
Q Consensus 252 ~~~~~~~ 258 (305)
++-+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9866554
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.4e-13 Score=112.65 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
...+..+||||+-|+.+++|.+|+..|+.||.|+.|+|++|+.||+++|||||+|+++.+...|.+..+|..|++....|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999996544444
Q ss_pred eeecc
Q 021950 156 RLNWA 160 (305)
Q Consensus 156 ~~~~~ 160 (305)
.+...
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 44443
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.49 E-value=4e-13 Score=107.66 Aligned_cols=171 Identities=28% Similarity=0.464 Sum_probs=134.0
Q ss_pred CceEEEcCCCcccCHHH-H--hHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 81 IRTLWIGDLQYWMDETY-L--NTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~-l--~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
....+++++-..+..+- | ...|+.+-.+...+++++. -+..++++|+.|...+.-.++-.+-+++.+ +...|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 34566666666665554 3 5667777767777777775 467788999999988877777666666666 5555776
Q ss_pred eccCCCCCC--CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021950 158 NWASFGAGE--KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 158 ~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
..+..-... -.-...+.+||++.|..+++++.|...|. +|-.....++++|+.+|+++||+||.|.+.+++..|++.
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 554432111 12334578999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCceecceeeEEccCCCCC
Q 021950 236 MNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 236 l~~~~i~g~~i~v~~~~~~~ 255 (305)
|+|++++.|.|++..+.-+.
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999997765544
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.48 E-value=7.1e-12 Score=105.69 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=132.4
Q ss_pred cCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCCCCCC
Q 021950 87 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGE 166 (305)
Q Consensus 87 ~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~ 166 (305)
-|--..+|.|-|..+....|.|.+|.|++. +| -.|.|||++.+.|.+|.+.|||..|..+.-.++|++++.....
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 344478899999999999999999988875 22 2699999999999999999999999888888999888764000
Q ss_pred ------------------------------------------------------------------------------CC
Q 021950 167 ------------------------------------------------------------------------------KR 168 (305)
Q Consensus 167 ------------------------------------------------------------------------------~~ 168 (305)
..
T Consensus 203 V~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~ 282 (494)
T KOG1456|consen 203 VQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPG 282 (494)
T ss_pred eeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCC
Confidence 00
Q ss_pred CCCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 169 DDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
....++.+.|.+|+.. .+-+.|..+|- .||.|++|++++.+ .|-|.|++.|..+.++|+..||+..+-|.+|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~C-lYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFC-LYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhh-hcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 1134678899999886 56688999999 99999999999876 67899999999999999999999999999999
Q ss_pred EccCCCCC
Q 021950 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|.+++...
T Consensus 357 v~~SkQ~~ 364 (494)
T KOG1456|consen 357 VCVSKQNF 364 (494)
T ss_pred Eeeccccc
Confidence 99887644
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=7.8e-14 Score=108.33 Aligned_cols=85 Identities=25% Similarity=0.473 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
+-+...+|.|-||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..+ .|+.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 446678999999999999999999999999999999999999999999999999999999999999999999 568888
Q ss_pred eeccCCC
Q 021950 157 LNWASFG 163 (305)
Q Consensus 157 ~~~~~~~ 163 (305)
|+++...
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 8877654
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=108.85 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=70.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
...+|||+||++.+++++|+++|+ .||.|.+|+|.+|. ..+++|||+|++.++|..|+ .|+|..|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 357999999999999999999999 99999999999884 44689999999999999999 58999999999999876
Q ss_pred CC
Q 021950 252 TN 253 (305)
Q Consensus 252 ~~ 253 (305)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.2e-12 Score=88.56 Aligned_cols=74 Identities=36% Similarity=0.668 Sum_probs=68.6
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
+|+|+|||..+++++|+++|+ .||.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999998 9999999999987644 6789999999999999999999999999999999875
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=4.1e-13 Score=116.92 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCH--HHHHHHHHHhCCCCCCCCCceee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISR--AGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
....+||||||.+++++++|+..|..||.|.++.|++. +| ||||||+|.+. .++.+|+..|||..+ .|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 45578999999999999999999999999999999944 56 89999999987 789999999999999 789999
Q ss_pred eeccCCC
Q 021950 157 LNWASFG 163 (305)
Q Consensus 157 ~~~~~~~ 163 (305)
|+.++..
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9888653
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=9.7e-13 Score=90.92 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
......+-|||.|||.++|.+++.++|.+||.|..|+|--.+ ..+|-|||.|++..+|++|++.|+|..+ .++.+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl 87 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYL 87 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCceE
Confidence 344677899999999999999999999999999999986554 4678999999999999999999999998 56777
Q ss_pred eeeccC
Q 021950 156 RLNWAS 161 (305)
Q Consensus 156 ~~~~~~ 161 (305)
.+-+-.
T Consensus 88 ~vlyyq 93 (124)
T KOG0114|consen 88 VVLYYQ 93 (124)
T ss_pred EEEecC
Confidence 765543
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=8e-13 Score=84.67 Aligned_cols=56 Identities=25% Similarity=0.563 Sum_probs=50.6
Q ss_pred HHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 190 l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
|.++|+ +||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678998 99999999997653 589999999999999999999999999999999985
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=9e-13 Score=106.51 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
...+|||+||++.+|+++|+++|+.||.|.+|+|++|. +.+++|||+|.+.++|+.|+ .|+|..| .++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 45799999999999999999999999999999999884 45689999999999999999 7899999 567788876
Q ss_pred cC
Q 021950 160 AS 161 (305)
Q Consensus 160 ~~ 161 (305)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 54
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.4e-12 Score=87.66 Aligned_cols=71 Identities=32% Similarity=0.640 Sum_probs=64.2
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
+|||+|||..+++++|+++|+.||.+..+.+..++ +.++|+|||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 58999999999999999999999999999998876 77889999999999999999999999888 4566554
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=112.44 Aligned_cols=79 Identities=38% Similarity=0.687 Sum_probs=76.6
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
..+|||+||+.++++++|+++|. .||.|..+.+..+..++.++|||||+|.+.++|..|+..++|..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 69999999999999999999999 99999999999998899999999999999999999999999999999999999965
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.4e-13 Score=106.60 Aligned_cols=86 Identities=22% Similarity=0.396 Sum_probs=81.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++||||+|..++|+.-|...|-.||.|.+|.+..|-.+++.+|||||+|...|+|..|+..||+.++ .|+.|+|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred ccCCCCCC
Q 021950 159 WASFGAGE 166 (305)
Q Consensus 159 ~~~~~~~~ 166 (305)
++......
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99876444
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.5e-13 Score=96.59 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
.+.-.|||.++...+|+++|.+.|..||.|+.+.+..|+.||-.+|||+|+|++.++|.+|+..+||..+ .+..|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEE
Confidence 4567799999999999999999999999999999999999999999999999999999999999999999 67888998
Q ss_pred ccCCC
Q 021950 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
|+-..
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 88654
No 100
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.6e-12 Score=99.33 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
..++|||+|||.++.+.+|..+|. +||.|..|.+.... ....||||+|++..+|+.||..-+|..++|+.|+|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 468999999999999999999999 99999999986542 22679999999999999999999999999999999998
Q ss_pred CCC
Q 021950 252 TNK 254 (305)
Q Consensus 252 ~~~ 254 (305)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 765
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2.2e-12 Score=86.36 Aligned_cols=70 Identities=30% Similarity=0.621 Sum_probs=63.8
Q ss_pred EcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 86 IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 86 V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
|+||+..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEe
Confidence 579999999999999999999999999999887789999999999999999999999998888 4566654
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=2.5e-12 Score=86.29 Aligned_cols=62 Identities=18% Similarity=0.419 Sum_probs=53.2
Q ss_pred HHHHHHHH----hhcCCCeeEEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 187 DYMLQETF----RARYPSTKGAK-VVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 187 ~~~l~~~f----~~~~G~i~~i~-i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
+++|+++| + +||.|.++. +..+..+ +.++|||||+|.+.++|.+|++.|||..++||.|++.
T Consensus 2 ~~~l~~~~~~~~~-~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEE-YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHH-hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 45555555 3 899999995 7777666 8999999999999999999999999999999999874
No 103
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=107.23 Aligned_cols=97 Identities=23% Similarity=0.396 Sum_probs=80.2
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
.+|||+|||.++++.+|+.+|+ +||+|.+|+|++ .||||..++...|..|+..|||..|+|..|.|+-+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe-~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFE-QYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHH-hhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 4799999999999999999999 999999999994 4999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcceEEeCCc----chhhhHHHHhhcc
Q 021950 254 KKTVSGQQQYPKGTFLVVGTG----FCLQIKFKFKYFI 287 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~ 287 (305)
|.+. .+.+.+|+. ...++.+++.+++
T Consensus 74 Ksk~--------stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 74 KSKA--------STKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred cCCC--------ccccccCCCCccccCHHHhhhhcccC
Confidence 7433 234555542 2224456666555
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.5e-11 Score=82.96 Aligned_cols=73 Identities=33% Similarity=0.653 Sum_probs=65.4
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..+ .++.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEe
Confidence 5899999999999999999999999999999987643 7789999999999999999999999887 56766664
No 105
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.1e-12 Score=102.58 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=82.4
Q ss_pred ceeeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021950 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (305)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (305)
|.|.+..+..+ .....+++||||-|...-.|||++.+|. .||.|++|.+.+.. +|.+||+|||+|.+..+|..|
T Consensus 3 rpiqvkpadse----srg~~drklfvgml~kqq~e~dvrrlf~-pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaA 76 (371)
T KOG0146|consen 3 RPIQVKPADSE----SRGGDDRKLFVGMLNKQQSEDDVRRLFQ-PFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAA 76 (371)
T ss_pred CCccccccccc----cCCccchhhhhhhhcccccHHHHHHHhc-ccCCcceeEEecCC-CCCCCCceEEEeccchHHHHH
Confidence 45555555433 2233578999999999999999999999 99999999999886 899999999999999999999
Q ss_pred HHHhCCce-e--cceeeEEccCCCCCCC
Q 021950 233 MTEMNGVF-C--STRPMRIGPATNKKTV 257 (305)
Q Consensus 233 ~~~l~~~~-i--~g~~i~v~~~~~~~~~ 257 (305)
|..|||.. + ....|.|+|+...+++
T Consensus 77 I~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 77 INALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHHhcccccCCCCccceEEEeccchHHH
Confidence 99999976 3 3478999998765554
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.5e-12 Score=106.17 Aligned_cols=83 Identities=25% Similarity=0.428 Sum_probs=79.7
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
.+.+.|||..|..-++++||.-+|+ .||.|.+|.|++|..+|.+-.||||+|++.+++++|.-+|++..|++|+|.|+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 5788999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021950 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
+.+=
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8763
No 107
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.3e-12 Score=102.57 Aligned_cols=140 Identities=22% Similarity=0.342 Sum_probs=118.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...++|||+|+...++|+.|.++|-+-|.|..+.|..++ .++.+ ||||.|.++....-|++.+||..+. ++.++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q-- 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE--EDEEQ-- 80 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc--cchhh--
Confidence 567899999999999999999999999999999888776 45666 9999999999999999999999883 34333
Q ss_pred ccCCCCCCCCCCCCCceEEEcC----CCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 159 WASFGAGEKRDDTPDHTIFVGD----LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~n----lp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
.+++.|+ |+..++++.+.+.|+ .-|.+..+++..+. +|.++.++|+.+....+.-.++.
T Consensus 81 ---------------~~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 81 ---------------RTLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ---------------cccccCCCcchhhhhcchhhheeeec-ccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhh
Confidence 3456666 788899999999998 99999999999886 58889999999988877777777
Q ss_pred HhCCcee
Q 021950 235 EMNGVFC 241 (305)
Q Consensus 235 ~l~~~~i 241 (305)
.-.+...
T Consensus 144 ~y~~l~~ 150 (267)
T KOG4454|consen 144 LYQGLEL 150 (267)
T ss_pred hhcccCc
Confidence 6665553
No 108
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.26 E-value=7e-12 Score=106.52 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=139.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
....++|++++...+.+.+...++..+|......+........++|++++.|+..+.+..++.......+. +..+...
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~--~~~~~~d 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD--GNKGEKD 163 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc--cccccCc
Confidence 45789999999999999989999999998878877776667899999999999999999999653333432 2223222
Q ss_pred ccCCCC------CCCCCCCCCceEE-EcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 159 WASFGA------GEKRDDTPDHTIF-VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 159 ~~~~~~------~~~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
...... ..+.......+++ |+||++.+++++|+.+|. .+|.|..+++..+..++..+|||+|+|.+..++..
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKL 242 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHH
Confidence 222211 1112223344455 999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHhCCceecceeeEEccCCCCCCC
Q 021950 232 AMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 232 a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
++.. ....+.++.+.+.+...+...
T Consensus 243 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 243 ALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred Hhhc-ccCcccCcccccccCCCCccc
Confidence 9987 888899999999998876444
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=3.6e-11 Score=80.65 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=53.6
Q ss_pred HHHHhHhhh----hcCCcEEEE-EEEeCCC--CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 95 ETYLNTCFA----HTGEVVAVK-VIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 95 ~~~l~~~f~----~~G~v~~~~-i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
+++|+++|+ .||.|.++. +..++.+ +.++|||||+|.+.++|.+|++.|+|..+ .++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 578899998 999999995 7777666 89999999999999999999999999999 5676654
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=3.4e-11 Score=95.60 Aligned_cols=85 Identities=20% Similarity=0.383 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCcCCCHHHHHH----HHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 171 TPDHTIFVGDLAADVTDYMLQE----TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~----~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
.+..||||.||+..+..++|++ +|+ .||.|.+|.... +.+.+|.|||.|++.+.|..|+..|+|..+.|+.+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 3445999999999999999998 998 999998887763 56789999999999999999999999999999999
Q ss_pred EEccCCCCCCCCC
Q 021950 247 RIGPATNKKTVSG 259 (305)
Q Consensus 247 ~v~~~~~~~~~~~ 259 (305)
+|.|++.+.....
T Consensus 83 riqyA~s~sdii~ 95 (221)
T KOG4206|consen 83 RIQYAKSDSDIIA 95 (221)
T ss_pred heecccCccchhh
Confidence 9999998766543
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=3.8e-11 Score=106.56 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 75 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
...+..+++|+|-|||.++++++|.++|+.||+|+.|+..+. .+|.+||+|-|..+|++|+++|++..|.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 334567899999999999999999999999999999776444 4679999999999999999999998883
No 112
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.24 E-value=2e-11 Score=103.99 Aligned_cols=124 Identities=20% Similarity=0.306 Sum_probs=96.2
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
..++|||++|.+++++|.|+++|. .||+|.++.+++|..++.++||+||+|++.+...+++.. ..+.|+|+.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 578999999999999999999998 999999999999999999999999999999999988875 568899999999999
Q ss_pred CCCCCCCCCCCCCCcceEEeCCcchhhhHHHHhhcc---ceeeEEEEEe
Q 021950 252 TNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFI---GWLIFIIIFF 297 (305)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~~~~~~ 297 (305)
.++...............++|.....-..+.|++++ |.+..++..+
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~ 131 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMY 131 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEee
Confidence 988877554444445567777432222233344333 2444444443
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=3.8e-11 Score=93.75 Aligned_cols=86 Identities=17% Similarity=0.312 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~-G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
........++|..++..+.+.++..+|. +| |.|.++++.+++.||.++|||||+|++.+.|..|-+.||+..+.++.|
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~-q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFR-QFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhh-hcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4455677899999999999999999998 66 888888888999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 021950 247 RIGPATNK 254 (305)
Q Consensus 247 ~v~~~~~~ 254 (305)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987664
No 114
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=1.8e-10 Score=100.89 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEE-EEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
.....|-+.+||+.+|++||.++|+..-.+.. |.+..+. .+++.|-|||+|++.+.|++|+.. +...| +.+.|+|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~i--GhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENI--GHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhh--ccceEEe
Confidence 45678999999999999999999998765555 4455554 578999999999999999999965 44444 4444444
Q ss_pred eccCCC--------------------------------------------------------------------------
Q 021950 158 NWASFG-------------------------------------------------------------------------- 163 (305)
Q Consensus 158 ~~~~~~-------------------------------------------------------------------------- 163 (305)
..+...
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 332110
Q ss_pred ---CC----CC-------CC-CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHH
Q 021950 164 ---AG----EK-------RD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (305)
Q Consensus 164 ---~~----~~-------~~-~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~ 228 (305)
.. .+ .. ......++.++||+..++.++..+|+ ......|+|-... +|+..|-|+|+|.+.++
T Consensus 257 ~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFs--pl~p~~v~i~ig~-dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 257 PNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFS--PLNPYRVHIEIGP-DGRATGEADVEFATGED 333 (510)
T ss_pred cccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcC--CCCceeEEEEeCC-CCccCCcceeecccchh
Confidence 00 00 00 01226788999999999999999997 4455578887774 89999999999999999
Q ss_pred HHHHHHHhCCceecceeeEEccC
Q 021950 229 QLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 229 A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
|..|+.. ++..+..+-|....-
T Consensus 334 av~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 334 AVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred hHhhhcc-CCcccCcceeeeccc
Confidence 9999876 677787777776543
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=5.4e-11 Score=109.06 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
..++|||||+|+..++|.||..+|+ .||+|.+|.++.. ++||||.+.+..+|.+|+.+|++..+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~fe-efGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFE-EFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHH-hcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 3578999999999999999999999 9999999998755 89999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 021950 251 ATNKKTVS 258 (305)
Q Consensus 251 ~~~~~~~~ 258 (305)
+..+.-+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 98876664
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.3e-11 Score=114.71 Aligned_cols=168 Identities=18% Similarity=0.284 Sum_probs=139.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
.+....++||+|||+..+++.+|+..|..+|.|.+|.|-.-+. +...-|+||.|.+.+.+-.|...+.+..|..+...+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3556789999999999999999999999999999998876542 444559999999999999999898888885443333
Q ss_pred eeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021950 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
.+. .. .....+.+++++|..++....|...|. .||.|..|.+-.. .-||+|.|++...|+.|+..
T Consensus 446 glG--~~------kst~ttr~~sgglg~w~p~~~l~r~fd-~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 446 GLG--QP------KSTPTTRLQSGGLGPWSPVSRLNREFD-RFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccc--cc------ccccceeeccCCCCCCChHHHHHHHhh-ccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 333 21 345678999999999999999999998 9999998877422 56999999999999999999
Q ss_pred hCCceecc--eeeEEccCCCCCCCCC
Q 021950 236 MNGVFCST--RPMRIGPATNKKTVSG 259 (305)
Q Consensus 236 l~~~~i~g--~~i~v~~~~~~~~~~~ 259 (305)
|.|..|+| +.++|.|+..-...-+
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGATPQ 536 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCChh
Confidence 99999976 7899999987555433
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=6.6e-11 Score=75.69 Aligned_cols=56 Identities=29% Similarity=0.644 Sum_probs=49.5
Q ss_pred HhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 98 l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
|+++|++||.|.++.+..+. +++|||+|.+.++|++|++.|+|..+ .++.|++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 67899999999999987653 57999999999999999999999999 7789999875
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.16 E-value=1.2e-09 Score=99.33 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=125.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
.+.+.+-+.+.+.+.++.+++++|... .+.+..+..+...+...|.++|+|....++.+|++. +...+ ..|.+++.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~--~~R~~q~~ 384 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD--VNRPFQTG 384 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh--hhcceeec
Confidence 344556667899999999999999754 255666666655555578999999999999999865 32222 34445543
Q ss_pred ccCCC---------------------------------CCCC--CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE
Q 021950 159 WASFG---------------------------------AGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (305)
Q Consensus 159 ~~~~~---------------------------------~~~~--~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~ 203 (305)
..... .... .....+.+|||..||..+++.++.++|. .--.|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~-~~~~Ved 463 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFM-GAAAVED 463 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhh-hhhhhhh
Confidence 33221 1111 1224577999999999999999999998 5556665
Q ss_pred -EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCC
Q 021950 204 -AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 204 -i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~ 254 (305)
|.|.... +++.++.|||.|...+++..|+..-+.++++.|.|+|+-...+
T Consensus 464 ~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 464 FIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred eeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 6666554 7888999999999999999998888888899999999865543
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=8.5e-11 Score=107.81 Aligned_cols=107 Identities=23% Similarity=0.372 Sum_probs=87.4
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
++|||||+|+.++++.||.++|+.||.|.+|.++.. +|||||.+...++|.+|+.+|+...+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 589999999999999999999999999999998765 47999999999999999999997777 7899999999
Q ss_pred CCCCCCC-CCCCCCceEEEcCCCcCCCHHHHHHHHh
Q 021950 161 SFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFR 195 (305)
Q Consensus 161 ~~~~~~~-~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 195 (305)
....... ..+.+...+=|..||++.-.++|+.+++
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 8654332 2334444556777888755555777664
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=4e-12 Score=117.60 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=131.6
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
....++||+||+..+.+.+|...|..+|.+..+++...+.+++.+|+||++|...+++.+|+.-.++..+ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g------ 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G------ 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---h------
Confidence 4457799999999999999999999999988888776677899999999999999999999965444333 1
Q ss_pred ccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021950 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
...|+|.|.|+..|.++|+.++. .+|++++++++..+ .|+.+|.|+|.|.+..+|.+++...+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 36799999999999999999999 99999999988775 799999999999999999999999888
Q ss_pred ceecceeeEEccCCC
Q 021950 239 VFCSTRPMRIGPATN 253 (305)
Q Consensus 239 ~~i~g~~i~v~~~~~ 253 (305)
..+.-+.+.|..+++
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 888888888887655
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=96.83 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=71.4
Q ss_pred CCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceecce
Q 021950 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTR 244 (305)
Q Consensus 166 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~i~g~ 244 (305)
+..++....+|||++|...++|.+|+++|. +||+|+++++... +++|||+|.+.++|+.|..++ +...|+|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345566778999999999999999999999 9999999999866 679999999999999998766 44558999
Q ss_pred eeEEccCCC
Q 021950 245 PMRIGPATN 253 (305)
Q Consensus 245 ~i~v~~~~~ 253 (305)
+|+|.|+..
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999998
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.14 E-value=5.4e-10 Score=101.43 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=66.7
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
.+.|-+.|+|++++-+||.++|. -|-.+-.-.+++..+.|+.+|-|.|.|++.++|.+|...|+++.|.+|+|++..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~-dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFN-DYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhc-ccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999998 887765444444446899999999999999999999999999999999998863
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=2e-10 Score=89.77 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhc-CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
.....+||..++.-+.+.++..+|.++ |.+..+++.+++.||.|+|||||+|++.+.|.-|.+.||+..+ .++.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhheeee
Confidence 445679999999999999999999998 7788889989999999999999999999999999999999988 6676666
Q ss_pred eccC
Q 021950 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
.+-.
T Consensus 125 ~vmp 128 (214)
T KOG4208|consen 125 HVMP 128 (214)
T ss_pred EEeC
Confidence 6543
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=4.9e-10 Score=99.59 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
.-.+.|||.+|...+...||+.+|+ +||.|...+|+.+..+--.++|+||++.+.++|.+||+.||...|.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4567899999999999999999999 999999999999977777799999999999999999999999999999999998
Q ss_pred CCC
Q 021950 251 ATN 253 (305)
Q Consensus 251 ~~~ 253 (305)
+++
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 876
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.8e-10 Score=94.78 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
...+.|||..|.+-+|+++|.-+|+.||.|.+|.+++|..||.+..||||+|++.+++++|.-+|+...| ..+.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVD 314 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVD 314 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEee
Confidence 3457999999999999999999999999999999999999999999999999999999999999999988 67888888
Q ss_pred ccCC
Q 021950 159 WASF 162 (305)
Q Consensus 159 ~~~~ 162 (305)
++..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8764
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=2.3e-09 Score=91.08 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=118.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
.++...+-.++|++..++.+|..+|+......-.+.+-....|+..|++.|.|.+.|.-+.|++. +...+ +++.+.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryiev 133 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIEV 133 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCceee
Confidence 34555677799999999999999998653322222222223477789999999999998888865 44344 5677776
Q ss_pred eccCCCCCC-----------C-CCCCCCceEEEcCCCcCCCHHHHHHHHhhc---CCCeeEEEEEecCCCCCcccEEEEE
Q 021950 158 NWASFGAGE-----------K-RDDTPDHTIFVGDLAADVTDYMLQETFRAR---YPSTKGAKVVIDRLTGRTKGYGFVR 222 (305)
Q Consensus 158 ~~~~~~~~~-----------~-~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~---~G~i~~i~i~~~~~~~~~~g~afV~ 222 (305)
-.+.....- . ......-.|.+++||+++++.|+.++|... -|..+.|-++... +|+.+|-|||.
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvl 212 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVL 212 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEE
Confidence 555432110 0 111234568889999999999999999411 2345566665553 78999999999
Q ss_pred eCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 223 f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
|...++|..||.+ |...|+-|.|.+..++
T Consensus 213 fa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 9999999999986 5556666766665443
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=3.5e-09 Score=88.96 Aligned_cols=82 Identities=22% Similarity=0.424 Sum_probs=70.8
Q ss_pred CCCCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021950 74 QQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 74 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (305)
.+..+....+|||++|...++|.+|++.|.+||+|+++.+...+ ++|||+|.+.+.|+.|.++.-. .+...|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVINGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecce
Confidence 34466778999999999999999999999999999999998764 4999999999999999987544 4444789
Q ss_pred eeeeeccCC
Q 021950 154 NFRLNWASF 162 (305)
Q Consensus 154 ~i~~~~~~~ 162 (305)
.++|.|+..
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999987
No 128
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.88 E-value=1.7e-08 Score=84.90 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~ 242 (305)
..+..|||.|||.++|.+++.++|+ +||.|.+ |++.++. .|+-+|=|+|.|-..++..-|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456799999999999999999999 9999875 6777775 6999999999999999999999999999999
Q ss_pred ceeeEEccCCCCCCC
Q 021950 243 TRPMRIGPATNKKTV 257 (305)
Q Consensus 243 g~~i~v~~~~~~~~~ 257 (305)
|+.|+|..|+-....
T Consensus 210 g~~~rVerAkfq~Kg 224 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKG 224 (382)
T ss_pred CcEEEEehhhhhhcc
Confidence 999999998765444
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.1e-08 Score=84.07 Aligned_cols=85 Identities=31% Similarity=0.430 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
......+|.|.||++.++++||+++|. .||.+..+-+.++. .|.+.|.|-|.|...++|.+|++.++|..++|+.|++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 334457899999999999999999999 99999999999886 8999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021950 249 GPATNKK 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
.......
T Consensus 157 ~~i~~~~ 163 (243)
T KOG0533|consen 157 EIISSPS 163 (243)
T ss_pred EEecCcc
Confidence 8765543
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=3.9e-08 Score=69.20 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=68.7
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----ceeeEE
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS----TRPMRI 248 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~-G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~----g~~i~v 248 (305)
+||.|+|||...+.++|.+++.+.+ |...-+.+..|..++.+.|||||.|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999987433 55667788888889999999999999999999999999998864 466777
Q ss_pred ccCCCC
Q 021950 249 GPATNK 254 (305)
Q Consensus 249 ~~~~~~ 254 (305)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777643
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=1.3e-08 Score=90.63 Aligned_cols=84 Identities=24% Similarity=0.368 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
..-.+.|||.+|...+...+|+++|++||.|+-.+++.+..+.-.++|+||++.+.++|.++|+.|+...| .|+.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 34568899999999999999999999999999999999877777889999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021950 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
..++..
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 888765
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.81 E-value=4.6e-08 Score=77.48 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCcee---ccee
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i---~g~~ 245 (305)
....+||||.+||.++.-.+|..+|. .|-..+.+.+.... .....+-+|||+|.+..+|.+|+++|||..| .+..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34579999999999999999999998 89888887776543 2234568999999999999999999999998 5789
Q ss_pred eEEccCCCCCCC
Q 021950 246 MRIGPATNKKTV 257 (305)
Q Consensus 246 i~v~~~~~~~~~ 257 (305)
|+|++++...+.
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 999998875554
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.80 E-value=6.3e-09 Score=83.87 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
.....+||.|.|-.+++++.|...|.+|-.....++++|+.+|+++||+||.|.+..++..|+.+++|+.+ +.+.|++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHh
Confidence 45567899999999999999999999998888899999999999999999999999999999999999999 6777777
Q ss_pred eccC
Q 021950 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
..+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 5443
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=8.7e-08 Score=67.47 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=68.0
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhc--CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC--CCceeee
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN--GEQNFRL 157 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~--~~~~i~~ 157 (305)
+||.|.|||...|.++|.+++... |...-+.+..|-.++.+.|||||.|.+.+.|.+..+.++|..+.. ..+..++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999754 556667777788889999999999999999999999999998853 2555667
Q ss_pred eccCC
Q 021950 158 NWASF 162 (305)
Q Consensus 158 ~~~~~ 162 (305)
.||..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 76653
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=7e-09 Score=92.43 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=66.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
+....+|+|-|||..+++++|.++|+ .||+|+.|+.-... +|..||+|.|..+|++|+++|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45678999999999999999999999 99999997765443 88999999999999999999999999999999
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.75 E-value=1.2e-08 Score=83.95 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=78.9
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~ 247 (305)
........+||+|+++.++.+++..+|+ -||.|..+.+..|...|.++|||||+|.+.+.+..|+. |++..|.|+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFE-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhccCCceEEEeccccccccchhhheee-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3445678999999999999999999999 99999999999999899999999999999999999999 999999999999
Q ss_pred EccCCCC
Q 021950 248 IGPATNK 254 (305)
Q Consensus 248 v~~~~~~ 254 (305)
|.+.+-+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987765
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=2.9e-08 Score=88.06 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=69.7
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~ 252 (305)
..+|||+|||.+++.++|+++|+ .||.|+...|..-...++..+||||+|++.+++..|+.+ +-..|++++|.|+-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk-~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFK-QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHh-hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34599999999999999999999 999999988877643455559999999999999999987 5788999999998766
Q ss_pred CCC
Q 021950 253 NKK 255 (305)
Q Consensus 253 ~~~ 255 (305)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 533
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.72 E-value=1.4e-09 Score=93.55 Aligned_cols=154 Identities=14% Similarity=0.257 Sum_probs=120.7
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
.++|++||.+.++..+|+.+|.....-.+-.++.. .||+||.+.+...|.+|++.++|+.- ..|+.+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccchh
Confidence 47999999999999999999976422222222222 26999999999999999999888642 257777777665
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEe-cCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021950 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI-DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
.. ...++++-|.|++.....+.|..++. .||.++.|..+. +.+ ....-|+|.+.+.+..|+..|+|..
T Consensus 75 ~k------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 75 PK------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hH------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 32 23356799999999999999999998 999999987642 322 2223378999999999999999999
Q ss_pred ecceeeEEccCCC
Q 021950 241 CSTRPMRIGPATN 253 (305)
Q Consensus 241 i~g~~i~v~~~~~ 253 (305)
+....++|.|--.
T Consensus 144 ~en~~~k~~YiPd 156 (584)
T KOG2193|consen 144 LENQHLKVGYIPD 156 (584)
T ss_pred hhhhhhhcccCch
Confidence 9999999999654
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=7.3e-08 Score=79.25 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
.+....+|+|.||+..+++++|+++|+.||.+..+.+..++ +|++.|.|-|.|...++|..|++.++|..+ .++.++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc--CCceee
Confidence 34455789999999999999999999999999888888886 699999999999999999999999999777 456666
Q ss_pred eeccCC
Q 021950 157 LNWASF 162 (305)
Q Consensus 157 ~~~~~~ 162 (305)
+.....
T Consensus 156 ~~~i~~ 161 (243)
T KOG0533|consen 156 IEIISS 161 (243)
T ss_pred eEEecC
Confidence 665543
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.62 E-value=2.4e-07 Score=82.29 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=64.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
.....+|||+|||.+++.++|+++|..||.|+...|......++..+||||+|.+.+++..|+++ + .+..+++.+.|
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-s--p~~ig~~kl~V 361 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-S--PLEIGGRKLNV 361 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-C--ccccCCeeEEE
Confidence 34456699999999999999999999999999988877653455558999999999999999976 4 33336666666
Q ss_pred eccC
Q 021950 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
.-..
T Consensus 362 eek~ 365 (419)
T KOG0116|consen 362 EEKR 365 (419)
T ss_pred Eecc
Confidence 5433
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=4e-08 Score=79.01 Aligned_cols=71 Identities=20% Similarity=0.408 Sum_probs=66.1
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
..+||++|++.+.+.+|..+|. .||.|..+.+. .||+||+|.+..+|..|+..||+..|.|..+.|.|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFK-GYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHh-hccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4689999999999999999999 99999998885 46889999999999999999999999998899999985
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.9e-08 Score=79.34 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
...++|||+|+...++||.|.++|- .-|.|..+.|..+. .++.+ ||||.|+++.+..-|++.+||..+.++.++|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3468999999999999999999998 99999999988775 56666 999999999999999999999999999999987
Q ss_pred CCC
Q 021950 251 ATN 253 (305)
Q Consensus 251 ~~~ 253 (305)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 544
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=78.17 Aligned_cols=83 Identities=18% Similarity=0.428 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
...+.+.+||+|+...+|.+++...|+.||.+..+.+..|+.++.++||+||+|.+.+.+.+++. |+|..| .++.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccce
Confidence 34567899999999999999999999999999999999999888999999999999999999996 899999 567777
Q ss_pred eeccCC
Q 021950 157 LNWASF 162 (305)
Q Consensus 157 ~~~~~~ 162 (305)
+.+...
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 766553
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=1.5e-07 Score=86.13 Aligned_cols=83 Identities=28% Similarity=0.552 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCC---CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
+...+.|||+||+..++++.|...|..||.|.+++|+.-+.. .+.+.|+||.|-+..+|++|++.|+|..+ .+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 344677999999999999999999999999999999875422 35567999999999999999999999999 7788
Q ss_pred eeeeccCC
Q 021950 155 FRLNWASF 162 (305)
Q Consensus 155 i~~~~~~~ 162 (305)
+++.|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999854
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=1.9e-07 Score=85.44 Aligned_cols=83 Identities=27% Similarity=0.517 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
+..++.|||+||+..++++.|...|. .||.|.+++|+.... ....+.+|||.|-+..+|++|++.|+|..+.++.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45678899999999999999999998 999999999986532 23457799999999999999999999999999999
Q ss_pred EEccCCC
Q 021950 247 RIGPATN 253 (305)
Q Consensus 247 ~v~~~~~ 253 (305)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999954
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.53 E-value=1.3e-08 Score=86.78 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=117.2
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCC---CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeee
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~ 157 (305)
...|.|.||.+++|.++++.+|...|.|.++++...... ......|||.|.+...+..|....|...| ....|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv--draliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV--DRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee--eeeEEEE
Confidence 348999999999999999999999999999999874422 33455899999999999988865455444 2222222
Q ss_pred eccCCC--------------CC-------------------------------------CCCCCCCCceEEEcCCCcCCC
Q 021950 158 NWASFG--------------AG-------------------------------------EKRDDTPDHTIFVGDLAADVT 186 (305)
Q Consensus 158 ~~~~~~--------------~~-------------------------------------~~~~~~~~~~l~v~nlp~~~~ 186 (305)
-+.... .. ......-.++++|.+|...+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 222110 00 000012246899999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 187 ~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
..++.++|. .+|+|.+.++.. +...-+|.++|....+...|+.. +|..+.-...++...++
T Consensus 165 l~e~~e~f~-r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 165 LPESGESFE-RKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAIIKP 225 (479)
T ss_pred chhhhhhhh-hcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhhcCc
Confidence 999999999 999999888753 33356788999999999999875 77776544444443333
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.45 E-value=1.5e-06 Score=58.31 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred ceEEEcCCCcCCCHHH----HHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 174 HTIFVGDLAADVTDYM----LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~----l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
..|+|.|||.+.+-.. |++++..-.|.|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 4555552334565441 3579999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021950 250 PATNKKT 256 (305)
Q Consensus 250 ~~~~~~~ 256 (305)
|......
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 9855443
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=73.64 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
.....+|||-+|+..+++++|.++|. ++|.|.. |.|-+|++|+..|+-|.|.|++...|+.|+.-++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 44567899999999999999999998 9999864 67778889999999999999999999999999999999
Q ss_pred cceeeEEccCCCCCC
Q 021950 242 STRPMRIGPATNKKT 256 (305)
Q Consensus 242 ~g~~i~v~~~~~~~~ 256 (305)
.|..|+|.++..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999887664
No 149
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=4.3e-06 Score=67.93 Aligned_cols=103 Identities=20% Similarity=0.355 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCCCCCCCceeeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCC
Q 021950 134 AGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213 (305)
Q Consensus 134 ~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~ 213 (305)
.-|..|..+|++... .++.+++.++. ...|+|.||...++.+.|.+.|+ .||.|+...++.|. .+
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVDD-RG 69 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhh-hcCccchheeeecc-cc
Confidence 456667778899988 78999999987 36799999999999999999998 99999998888774 68
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCce----ecceeeEEccC
Q 021950 214 RTKGYGFVRFGDESEQLRAMTEMNGVF----CSTRPMRIGPA 251 (305)
Q Consensus 214 ~~~g~afV~f~~~~~A~~a~~~l~~~~----i~g~~i~v~~~ 251 (305)
+..+-++|+|...-.|.+|+..++-.- ..++..-|...
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 888899999999999999999884332 35566655543
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=4.1e-06 Score=60.42 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=39.3
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
..|+|.++...++.++|++.|+ .||.|..|.+... ...|+|.|.+.++|.+|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 5689999999999999999999 9999999988654 346999999999999999877544
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.11 E-value=4.3e-06 Score=72.59 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEec---CCCCC----------cccEEEEEeCCHHHHHHHHH
Q 021950 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID---RLTGR----------TKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~---~~~~~----------~~g~afV~f~~~~~A~~a~~ 234 (305)
.+.-+.++|.+.|||.+-..+.|.++|+ .+|.|..|+|+.. ..+++ .+-+|+|+|+..+.|.+|.+
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 3445789999999999999999999999 9999999999876 32221 25579999999999999999
Q ss_pred HhCCceecceeeEEc
Q 021950 235 EMNGVFCSTRPMRIG 249 (305)
Q Consensus 235 ~l~~~~i~g~~i~v~ 249 (305)
.|+...-+-..|+|.
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 887655444444443
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.10 E-value=7.6e-06 Score=68.94 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=64.6
Q ss_pred CceEEEcCCCcCCCHHHH------HHHHhhcCCCeeEEEEEecC-CCCCcccEE--EEEeCCHHHHHHHHHHhCCceecc
Q 021950 173 DHTIFVGDLAADVTDYML------QETFRARYPSTKGAKVVIDR-LTGRTKGYG--FVRFGDESEQLRAMTEMNGVFCST 243 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l------~~~f~~~~G~i~~i~i~~~~-~~~~~~g~a--fV~f~~~~~A~~a~~~l~~~~i~g 243 (305)
..-+||-+|+..+-.|++ -++|. +||.|..|.|.+.. ..+...+.+ ||+|.+.|+|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 356888899988877662 46787 99999888776543 112222333 899999999999999999999999
Q ss_pred eeeEEccCCCCCC
Q 021950 244 RPMRIGPATNKKT 256 (305)
Q Consensus 244 ~~i~v~~~~~~~~ 256 (305)
|.|+..|..-+.-
T Consensus 193 r~lkatYGTTKYC 205 (480)
T COG5175 193 RVLKATYGTTKYC 205 (480)
T ss_pred ceEeeecCchHHH
Confidence 9999999887543
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=4.7e-05 Score=51.23 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=45.4
Q ss_pred ceEEEcCCCcccCHHHHhHh----hhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 82 RTLWIGDLQYWMDETYLNTC----FAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~----f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
..|||.|||.+.+...|+.- +..+|. |.+|. .+.|.|.|.+.+.|++|.+.|+|..+ .|..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 46999999998887776654 456664 55542 24799999999999999999999988 678888
Q ss_pred eeccCC
Q 021950 157 LNWASF 162 (305)
Q Consensus 157 ~~~~~~ 162 (305)
+.+...
T Consensus 71 v~~~~~ 76 (90)
T PF11608_consen 71 VSFSPK 76 (90)
T ss_dssp EESS--
T ss_pred EEEcCC
Confidence 887743
No 154
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.95 E-value=7.7e-06 Score=69.19 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCC--eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~--i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
....++||+||-|++|++||.+.+. ..|. +.++++..+..+|++||||+|...+..+.++.++.|-.+.|.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3456899999999999999999997 6664 667888889999999999999999999999999999999999987666
Q ss_pred ccC
Q 021950 249 GPA 251 (305)
Q Consensus 249 ~~~ 251 (305)
--+
T Consensus 157 ~~~ 159 (498)
T KOG4849|consen 157 LSY 159 (498)
T ss_pred ecc
Confidence 443
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.92 E-value=1.6e-05 Score=67.27 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=65.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCC--cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (305)
......++|||||-+.+|++||.+.+...|. +.++++..++.+|.+||||+|...+....++.++.|-.++|.|
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 4556678999999999999999999987774 7788999999999999999999999999999998887777765
No 156
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=9.7e-07 Score=82.66 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=114.1
Q ss_pred CceEEEcCCCcccCHH-HHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 81 IRTLWIGDLQYWMDET-YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
.+...+.++.+..... ..+..|..+|.|+.+++-..........++++++....+++.|... .+..+ ..+...+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~--a~~~~av~~ 647 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGAL--ANRSAAVGL 647 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-ccccc--CCccccCCC
Confidence 3456667776666555 6778899999999988766322222222789999999999888744 55555 445555555
Q ss_pred cCCCCCCCCCC------CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021950 160 ASFGAGEKRDD------TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 160 ~~~~~~~~~~~------~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
+.......... ....++||.||+....+++|...|. .+|.+..+.+.....+++.+|+|+++|...++|.+|+
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 54332211111 2235799999999999999999998 9999998887766678899999999999999999999
Q ss_pred HHhCCceec
Q 021950 234 TEMNGVFCS 242 (305)
Q Consensus 234 ~~l~~~~i~ 242 (305)
....++.++
T Consensus 727 ~f~d~~~~g 735 (881)
T KOG0128|consen 727 AFRDSCFFG 735 (881)
T ss_pred hhhhhhhhh
Confidence 865555444
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.88 E-value=4.3e-05 Score=63.35 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCeeEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 187 DYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 187 ~~~l~~~f~~~~G~i~~i~i~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
++++++.++ +||.|..|.|..+...-. ..---||+|+..++|.+|+-.|||.+|+||.++..|.+-
T Consensus 300 ede~keEce-Kyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECE-KYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHH-hhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 467889998 999999998887642211 122379999999999999999999999999999988653
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.85 E-value=2.3e-05 Score=66.10 Aligned_cols=111 Identities=8% Similarity=0.192 Sum_probs=75.2
Q ss_pred CceEEEcCCCcccCHHHH------hHhhhhcCCcEEEEEEEeCCC-CCccce--EEEEEcCHHHHHHHHHHhCCCCCCCC
Q 021950 81 IRTLWIGDLQYWMDETYL------NTCFAHTGEVVAVKVIRNKQT-GQIEGY--GFIEFISRAGAERVLQTFNGTPMPNG 151 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l------~~~f~~~G~v~~~~i~~~~~~-~~~~g~--afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (305)
.+-+||-+|+..+..+++ .++|.+||.|..|.+.+...+ +...+. .||+|.+.|+|.++|.+.+|..+ .
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 456899999988877763 368999999998877665322 222232 39999999999999999999999 6
Q ss_pred CceeeeeccCCCCCC----CCCCCCCceEEEcCCCc---CCCHHHHHHH
Q 021950 152 EQNFRLNWASFGAGE----KRDDTPDHTIFVGDLAA---DVTDYMLQET 193 (305)
Q Consensus 152 ~~~i~~~~~~~~~~~----~~~~~~~~~l~v~nlp~---~~~~~~l~~~ 193 (305)
|+.++..+...+--. ...-....+.|+..-.. .++.+||-..
T Consensus 192 Gr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 192 GRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred CceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 799999888654111 11122344555533222 3566666554
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.83 E-value=1.9e-05 Score=67.34 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcE--------EEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
.....+|||.+|+..+++++|.++|.++|.|. .|++-+++.|++.|+-|.|.|.+...|+.|+.-++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf- 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF- 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-
Confidence 45667899999999999999999999998764 367788899999999999999999999999999999999
Q ss_pred CCCceeeeeccCCC
Q 021950 150 NGEQNFRLNWASFG 163 (305)
Q Consensus 150 ~~~~~i~~~~~~~~ 163 (305)
.+..|+|..+...
T Consensus 142 -~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 -CGNTIKVSLAERR 154 (351)
T ss_pred -cCCCchhhhhhhc
Confidence 4578888777654
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5.5e-05 Score=54.57 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=38.4
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 145 (305)
+.|.|.++...++.++|++.|+.||.|..|.+.+.-. -|||.|.+.+.|+.|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHh
Confidence 4688999999999999999999999999998876432 699999999999999987643
No 161
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00028 Score=63.11 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecC---CCCCccc---EEEEEeCCHHHHHHHHHHhCC----ce
Q 021950 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR---LTGRTKG---YGFVRFGDESEQLRAMTEMNG----VF 240 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~---~~~~~~g---~afV~f~~~~~A~~a~~~l~~----~~ 240 (305)
.-.++||||+||.+++|+.|...|. .||.+. +...... ..--.+| |+|+-|+++.+....+.+..- ..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~-~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFG-QFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcc-cccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 4578999999999999999999998 999976 4444211 1112356 999999999988877766542 11
Q ss_pred e-------cceeeEEcc---CCCCCCCCCCCCCCCcceEEeCCcchhhhHHHHhhccceeeEEEEEeeeec
Q 021950 241 C-------STRPMRIGP---ATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNIST 301 (305)
Q Consensus 241 i-------~g~~i~v~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 301 (305)
| ..+.+.|.- +....-....+..+-.+..|+|...+--.++.|+.....+.-.|.|-.|++
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt 405 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT 405 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc
Confidence 1 122222221 111111122455566677888875555444444444444444555555554
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00026 Score=50.34 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=52.2
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEE-EEecC------CCCCcccEEEEEeCCHHHHHHHHHHhCCceecce-
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVIDR------LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR- 244 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~-i~~~~------~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~- 244 (305)
...|.|-+.|.. ....|.++|+ +||+|.+.. +..+. ..-....+-.|+|++..+|.+||.+ ||..++|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 466889999998 5566888888 999998775 10000 0012256889999999999999986 99999875
Q ss_pred eeEEccCCC
Q 021950 245 PMRIGPATN 253 (305)
Q Consensus 245 ~i~v~~~~~ 253 (305)
-+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 555777643
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00011 Score=66.23 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCceEEEcCCCcCC------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-c
Q 021950 171 TPDHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-T 243 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~-g 243 (305)
.-...|+|.|+|.-- -..-|.++|+ ++|.|....+..+.++| .+||.|++|.+..+|..|++.|||+.|+ +
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 446789999988632 2345778898 99999999999886555 8999999999999999999999999984 5
Q ss_pred eeeEEccC
Q 021950 244 RPMRIGPA 251 (305)
Q Consensus 244 ~~i~v~~~ 251 (305)
++..|..-
T Consensus 134 Htf~v~~f 141 (698)
T KOG2314|consen 134 HTFFVRLF 141 (698)
T ss_pred ceEEeehh
Confidence 66666543
No 164
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.66 E-value=4.7e-05 Score=65.09 Aligned_cols=83 Identities=19% Similarity=0.485 Sum_probs=71.3
Q ss_pred CCCCceEE-EcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceee
Q 021950 78 PGEIRTLW-IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~-V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++| |++|+.++++++|+..|..+|.|..+++..+..++..+|||||+|.+...+..++.. ....+ .++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~ 257 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLR 257 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCcccc
Confidence 34445555 999999999999999999999999999999999999999999999999999999865 56666 678888
Q ss_pred eeccCCC
Q 021950 157 LNWASFG 163 (305)
Q Consensus 157 ~~~~~~~ 163 (305)
+......
T Consensus 258 ~~~~~~~ 264 (285)
T KOG4210|consen 258 LEEDEPR 264 (285)
T ss_pred cccCCCC
Confidence 8777654
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00018 Score=44.90 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=41.4
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
+.|-|.+.+.+..+ ++..+|. .||+|..+.+.. ...+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~-~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFA-SFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHH-hcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56788888877654 5666888 899999988752 2568999999999999985
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.55 E-value=5.5e-05 Score=61.59 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCc
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT--------GRTKG----YGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~--------~~~~g----~afV~f~~~~~A~~a~~~l~~~ 239 (305)
....||+++||...+-.-|+++|+ .||.|-+|.+.....+ |.+++ -|.|+|.+...|.++...||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999 9999999988765443 22222 3679999999999999999999
Q ss_pred eeccee
Q 021950 240 FCSTRP 245 (305)
Q Consensus 240 ~i~g~~ 245 (305)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.49 E-value=4.8e-05 Score=62.08 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCC
Q 021950 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~ 254 (305)
|||...|+++||+|+++.|..+. .-.-.|=++|.|...++|++|++.||+..+.|+.|...++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 56666676699999999887663 2344677999999999999999999999999999999887653
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.44 E-value=0.00034 Score=43.65 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=41.3
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHH
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 140 (305)
+.|-|.+.+.+.. +++...|..||+|..+.+-.. ..+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5678888887666 456668999999999887522 238999999999999985
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.42 E-value=0.0001 Score=66.75 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---cceee
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRPM 246 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i---~g~~i 246 (305)
...++.|+|.||=.-+|.-+|+.++...+|.|++..| | +-+..|||.|.+.++|.+...+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3567899999999999999999999867777877743 2 1267899999999999999999999885 78999
Q ss_pred EEccCCCC
Q 021950 247 RIGPATNK 254 (305)
Q Consensus 247 ~v~~~~~~ 254 (305)
.+.|....
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99998764
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.38 E-value=0.00018 Score=58.67 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=59.7
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCC--------CCccc----eEEEEEcCHHHHHHHHHHhCCCC
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT--------GQIEG----YGFIEFISRAGAERVLQTFNGTP 147 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~--------~~~~g----~afV~f~~~~~A~~a~~~l~g~~ 147 (305)
..-.||+++||+.++...|+++|+.||.|-.|.+.....+ |.+++ -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999988876544 22222 36799999999999999999999
Q ss_pred CCC
Q 021950 148 MPN 150 (305)
Q Consensus 148 ~~~ 150 (305)
|.|
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 944
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0011 Score=60.12 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=60.3
Q ss_pred CCCCceEEEcCCC--cccCHHHH----hHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 021950 78 PGEIRTLWIGDLQ--YWMDETYL----NTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (305)
Q Consensus 78 ~~~~~~l~V~nLp--~~~t~~~l----~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (305)
+.....|+|.|+| .....+.| ..+|+++|.+....+..+.. |.++||.|++|++..+|+.|++.|||..++ +
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-k 132 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD-K 132 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec-c
Confidence 3556788999998 33334444 45689999999988887765 559999999999999999999999999986 3
Q ss_pred Cceeee
Q 021950 152 EQNFRL 157 (305)
Q Consensus 152 ~~~i~~ 157 (305)
...+.+
T Consensus 133 nHtf~v 138 (698)
T KOG2314|consen 133 NHTFFV 138 (698)
T ss_pred cceEEe
Confidence 444443
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0025 Score=48.12 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=52.5
Q ss_pred CCCCceEEEcCCC------cCCCH---HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021950 170 DTPDHTIFVGDLA------ADVTD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 170 ~~~~~~l~v~nlp------~~~~~---~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
..+..||.|.-+. ..+.+ .+|.+.|. .||++.-+++.-+ .-.|+|.+-++|.+|+. ++|..
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 3556777776555 22333 36778887 8999988877643 46899999999999997 69999
Q ss_pred ecceeeEEccCCCCCCCC
Q 021950 241 CSTRPMRIGPATNKKTVS 258 (305)
Q Consensus 241 i~g~~i~v~~~~~~~~~~ 258 (305)
++|+.|+|+...+.....
T Consensus 94 v~g~~l~i~LKtpdW~~~ 111 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDWLKG 111 (146)
T ss_dssp ETTEEEEEEE--------
T ss_pred ECCEEEEEEeCCccHHHH
Confidence 999999999988876554
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.20 E-value=0.00043 Score=60.52 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEe---CCC--CC--------ccceEEEEEcCHHHHHHHHHHhC
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN---KQT--GQ--------IEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~--~~--------~~g~afV~f~~~~~A~~a~~~l~ 144 (305)
.-..++|.+-|||.+-.-+.|.++|..+|.|.+|+|+.- ..+ +. .+-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357899999999999999999999999999999999875 222 11 24589999999999999998774
Q ss_pred C
Q 021950 145 G 145 (305)
Q Consensus 145 g 145 (305)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.03 E-value=0.0046 Score=41.76 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=42.8
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
....+|. +|.++...||.++|+ .||.|. |..+.|. -|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFs-pfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFS-PFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCC-CCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhc-cCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4456665 999999999999999 999986 6666552 599999999999999988763
No 175
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.99 E-value=0.0003 Score=66.88 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
...+.+||++||+..+++.+|+..|. .+|.|.+|.|.... -+..-.||||.|.+...+-.|+..+.+..|..-.+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~-e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFD-ESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhh-hhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 35688999999999999999999998 99999999998763 23335689999999999999999999999877777777
Q ss_pred cCCC
Q 021950 250 PATN 253 (305)
Q Consensus 250 ~~~~ 253 (305)
+...
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 7654
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.91 E-value=0.0066 Score=38.84 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.8
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhc----CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHT----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 143 (305)
..+|+|.|+. +++.++|+.+|..| + ...|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999995 47889999999999 4 4578888775 5999999999999999754
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.89 E-value=0.0048 Score=41.67 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=41.4
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 144 (305)
.||--..|..+...||.++|+.||.| .|..+-|. -|||.+.+.+.|..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34444499999999999999999997 66777664 69999999999999998765
No 178
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.88 E-value=0.00025 Score=65.26 Aligned_cols=146 Identities=11% Similarity=0.206 Sum_probs=90.2
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
..+|||+|+-..+..+-++.++..+|.|.++.... |||++|.....+.+|+..++-..+.+.+....++..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 45899999999999999999999999988776433 899999999999999988887777555444444322
Q ss_pred CCCCCCC------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHH
Q 021950 161 SFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (305)
Q Consensus 161 ~~~~~~~------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~ 228 (305)
......+ ......+-.+|.|++..+.+....+.|. --+.....+-.... .+..+.++|-+|.+...
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~-is~s~~s~~~~~e~-d~h~~e~~~~~~~s~~~ 188 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ-ISSSAASRRQIAEA-DDHCLELEKTETESNSA 188 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh-ccchhhhhhhhHHH-HHHHHHHHHhhcccccc
Confidence 2111111 1111245567777777777766666664 33333332222221 22233445555555444
Q ss_pred HHHHHHHhC
Q 021950 229 QLRAMTEMN 237 (305)
Q Consensus 229 A~~a~~~l~ 237 (305)
+..+.....
T Consensus 189 ~~~~~~~~~ 197 (668)
T KOG2253|consen 189 LSKEAESKK 197 (668)
T ss_pred cCccccccc
Confidence 444443333
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.88 E-value=0.0035 Score=44.56 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=49.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEE-EEEeC------CCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK-VIRNK------QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~-i~~~~------~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (305)
...+-|.|-+.|.. ....|.+.|++||.|.+.. +.++. .......+-.|+|.+..+|.+||.+ ||..+.+
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g- 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG- 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT-
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC-
Confidence 34566888899888 5577889999999987764 11100 0012234889999999999999965 9988843
Q ss_pred Cceeeeecc
Q 021950 152 EQNFRLNWA 160 (305)
Q Consensus 152 ~~~i~~~~~ 160 (305)
...+-+.+.
T Consensus 81 ~~mvGV~~~ 89 (100)
T PF05172_consen 81 SLMVGVKPC 89 (100)
T ss_dssp CEEEEEEE-
T ss_pred cEEEEEEEc
Confidence 233444443
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.80 E-value=0.018 Score=41.74 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=50.7
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
...+.+...+..++.++|..+.+.+-. |..++|++|. ..++-.+++.|.+.++|+...+.+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444555556677777777766666544 7788888874 235667999999999999999999999883
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.66 E-value=0.015 Score=37.19 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=44.1
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcC---CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARY---PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~---G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
...|+|.+++. ++.+||+.+|. .| ....+|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46799999965 78888999998 77 235568888774 3779999999999999864
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.65 E-value=0.0011 Score=54.36 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=45.7
Q ss_pred hcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 104 HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 104 ~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
+||+|+++.|..+. .-.-.|-+||.|..+++|++|++.||+.++ .|++|...+..
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecC
Confidence 89999998776653 234567899999999999999999999999 67887776654
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.61 E-value=0.002 Score=58.79 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhh-hcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC-CCCce
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQN 154 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-~~~~~ 154 (305)
....++.|||.||-.-.|.-+|+.++. ..|.|.+.+|=+ -+..|||.|.+.++|.+.+.+|+|..+. ++.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 446678999999999999999999998 556677764422 2347999999999999999999998775 45666
Q ss_pred eeeeccCC
Q 021950 155 FRLNWASF 162 (305)
Q Consensus 155 i~~~~~~~ 162 (305)
+.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777654
No 184
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.54 E-value=0.0016 Score=56.99 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=60.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecceeeEEccCC
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT 252 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-i~g~~i~v~~~~ 252 (305)
.++|++||...++-.||..+|.+.--... -.++.. .||+||.+.+...|.+|++.++|+. +.|.++.|.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~-g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGS-GQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCC-cceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999973211111 111111 5799999999999999999999876 899999999988
Q ss_pred CCCCCC
Q 021950 253 NKKTVS 258 (305)
Q Consensus 253 ~~~~~~ 258 (305)
.+..+.
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 766553
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.50 E-value=0.0086 Score=50.05 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHHhHhhhhcCCcEEEEEEEeCCCCCcc-ceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 95 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~-g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
++++.+..++||.|..|.|..+...-... ---||+|...++|.+|+-.|||+.+ +|+.++..+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeeheecc
Confidence 45666778999999999888775332222 2479999999999999999999999 78888876554
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.48 E-value=0.046 Score=39.64 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=50.6
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g 243 (305)
...+.+...+..++-++|..+.+.--..|..++|++|. ..++-.++++|.+.++|..-....||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555566666677776666223447788898884 2357789999999999999999999998743
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.42 E-value=0.014 Score=47.99 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=54.7
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 143 (305)
..|||.||..-++.+.+.+.|+.||.|....+..|- .++..+-++|+|...-.|.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 679999999999999999999999999887777763 5778888999999999999999876
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.24 E-value=0.016 Score=43.37 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCCceEEEcCCCcCC----CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021950 170 DTPDHTIFVGDLAADV----TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~----~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~ 245 (305)
+.+-.+|.|+=|..+. +...+.+.++ .||.|.+|... | +.-|.|.|++..+|-+|+.+++. ..-|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 4556788887665554 3344555677 99999999874 3 44699999999999999999875 677888
Q ss_pred eEEccCCC
Q 021950 246 MRIGPATN 253 (305)
Q Consensus 246 i~v~~~~~ 253 (305)
+.++|-..
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 89988543
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.12 E-value=0.016 Score=46.19 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=46.4
Q ss_pred CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecceeeEEccCCCC
Q 021950 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPMRIGPATNK 254 (305)
Q Consensus 186 ~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~i~g~~i~v~~~~~~ 254 (305)
..+.|+++|. .|+.+..+.++.. -+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHH-hcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999998 9999988877754 3458999999999999999999 99999999999998543
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.018 Score=43.64 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=42.1
Q ss_pred HHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 97 YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 97 ~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
+|.+.|+.||.+.-++++.+ .-+|+|.+.+.|.+|+ .++|..+ +|+.+++....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v--~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV--NGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE--TTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE--CCEEEEEEeCC
Confidence 66677889999887777654 4899999999999999 6799999 67777776544
No 191
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.96 E-value=0.096 Score=47.26 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=21.3
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEE
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~ 111 (305)
.-+.+-...|+..-..++|..-+.+-|.++.+
T Consensus 480 ql~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 480 QLKKVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred cccceeeccCcCcccHHHHHHHHHhccccccc
Confidence 34566677777777778888888765554443
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.86 E-value=0.029 Score=51.08 Aligned_cols=98 Identities=9% Similarity=0.179 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHhCCCCCCCCCceeeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhh-cCCCeeEEEEEecC
Q 021950 132 SRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA-RYPSTKGAKVVIDR 210 (305)
Q Consensus 132 ~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~~G~i~~i~i~~~~ 210 (305)
|.+-...+|++.-+..++.++..++-. ...+.|.|+.|+..+-+|+++.+|+. -+-.+.+|.+..+.
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~------------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~ 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPN------------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccC------------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC
Confidence 444445556555566665444444333 33578889999999999999999972 24567778876652
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCC--ceecceeeEE
Q 021950 211 LTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRPMRI 248 (305)
Q Consensus 211 ~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~i~g~~i~v 248 (305)
+ =||+|++..||..|.+.|.. +.|-|+.|..
T Consensus 214 --n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 214 --N-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred --c-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 2 48999999999999887753 2355555543
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.84 E-value=0.0045 Score=52.90 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=64.5
Q ss_pred CceEEEcCCCcCCCHHHHH---HHHhhcCCCeeEEEEEecCC--CCC-cccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 173 DHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRL--TGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~---~~f~~~~G~i~~i~i~~~~~--~~~-~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
..-+||-+|+..+.++++. +.|. +||.|..|.+..+.. .+. ...-++|+|+..++|..||...+|..++|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3557788888877665554 4577 889999888877652 111 12238999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 021950 247 RIGPATNKKTV 257 (305)
Q Consensus 247 ~v~~~~~~~~~ 257 (305)
+..+...+...
T Consensus 156 ka~~gttkycs 166 (327)
T KOG2068|consen 156 KASLGTTKYCS 166 (327)
T ss_pred HHhhCCCcchh
Confidence 99998886654
No 194
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.76 E-value=0.014 Score=50.78 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=60.1
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~ 250 (305)
..|.|.||...++.++++.+|. -.|.|..+.+..+.. -......|||.|.+..++..|- .|.++.+-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4899999999999999999998 999999999875422 2234568999999999988885 4666776666666644
Q ss_pred C
Q 021950 251 A 251 (305)
Q Consensus 251 ~ 251 (305)
+
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 3
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.55 E-value=0.0062 Score=54.19 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=57.4
Q ss_pred EEEcCCCcCC-CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCC
Q 021950 176 IFVGDLAADV-TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 176 l~v~nlp~~~-~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~ 254 (305)
|-+.-.++.. +.++|...|. +||+|..|.+-.. --.|.|+|.+..+|-+|.. .++..|++|.|+|.|.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhhh-hcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 3344445554 4589999998 9999999988544 2358999999999988865 5999999999999999884
Q ss_pred C
Q 021950 255 K 255 (305)
Q Consensus 255 ~ 255 (305)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.49 E-value=0.017 Score=45.82 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=45.9
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhh-cCCc---EEEEEEEeCCC-C-CccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAH-TGEV---VAVKVIRNKQT-G-QIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~~~i~~~~~~-~-~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
....+|.|++||+++|++++++.++. ++.- ..+.-...... . ..-.-|||.|.+.+++......++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45579999999999999999998776 5554 23321222111 1 22346999999999999999999997663
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.44 E-value=0.059 Score=40.35 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=54.2
Q ss_pred CCCceEEEcCCCccc----CHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 79 GEIRTLWIGDLQYWM----DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~----t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
....+|.|.=|..++ +...|...++.||.|.++..... .-|.|.|++..+|-+|+.++.... -|..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~---pgtm 153 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRA---PGTM 153 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCC---CCce
Confidence 344677786555444 34445566789999999977543 269999999999999999887643 4788
Q ss_pred eeeeccCC
Q 021950 155 FRLNWASF 162 (305)
Q Consensus 155 i~~~~~~~ 162 (305)
+++.|...
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 88888753
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.44 E-value=0.022 Score=45.27 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=51.5
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhc-CCCe---eEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceecc--
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRAR-YPST---KGAKVVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFCST-- 243 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~-~G~i---~~i~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g-- 243 (305)
...+|.|++||..+|++++.+.+. . ++.- .++.-...... .....-|+|.|.+.++...-...++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 356899999999999999999776 5 6665 33332222111 1223459999999999999999999988632
Q ss_pred ---eeeEEccCCCCC
Q 021950 244 ---RPMRIGPATNKK 255 (305)
Q Consensus 244 ---~~i~v~~~~~~~ 255 (305)
....|.++--+.
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 345666665533
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.42 E-value=0.51 Score=39.93 Aligned_cols=158 Identities=11% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCC-------CCCccceEEEEEcCHHHHHHHHH----HhCCC
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-------TGQIEGYGFIEFISRAGAERVLQ----TFNGT 146 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-------~~~~~g~afV~f~~~~~A~~a~~----~l~g~ 146 (305)
.-..|.|...|+..+++--.+..-|.+||.|++|.++.+.. .........+.|-+.+.+-..-. +|...
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34467799999999999999999999999999999998751 12334568889998887755432 22221
Q ss_pred CCCCCCceeeeeccCCCCCC----------------------CCCCCCCceEEEcCCCcCCCHHH-HHHHH---hhcCC-
Q 021950 147 PMPNGEQNFRLNWASFGAGE----------------------KRDDTPDHTIFVGDLAADVTDYM-LQETF---RARYP- 199 (305)
Q Consensus 147 ~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~~~~-l~~~f---~~~~G- 199 (305)
.-......+.+.+....... -.....++.|.|. +...+.+++ +.+.+ . .-+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~-~~~n 169 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLK-NSNN 169 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhc-cCCC
Confidence 11113344444443321000 0122445666664 334443333 33222 2 223
Q ss_pred ---CeeEEEEEecCC--CCCcccEEEEEeCCHHHHHHHHHHhC
Q 021950 200 ---STKGAKVVIDRL--TGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 200 ---~i~~i~i~~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
.|++|.++...+ ..-.+.||.++|-++.-|...+.-|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 367787775422 33458899999999999999988776
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.39 E-value=0.14 Score=33.34 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
.++-++++..|. .|+- .+|..|. + | =||.|.+.++|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr-~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999998 8875 3455554 3 3 379999999999999999999988877765
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.1 Score=44.01 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=55.3
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce-eeEEcc
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-PMRIGP 250 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~-~i~v~~ 250 (305)
....|-|.+++..-. ..|..+|+ +||+|...... ....+-.|.|.++-+|.+||.. +|+.|+|. -|-|+.
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~-~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFS-RCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHH-hhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 356788888887643 45777888 99999755433 2245889999999999999987 88888774 455666
Q ss_pred CCCCC
Q 021950 251 ATNKK 255 (305)
Q Consensus 251 ~~~~~ 255 (305)
+..+.
T Consensus 267 CtDks 271 (350)
T KOG4285|consen 267 CTDKS 271 (350)
T ss_pred cCCHH
Confidence 55543
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.88 E-value=0.097 Score=50.21 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=66.4
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
.+.++.|..-..+-.-|..++.+||.|.+++..++-+ .|.|+|.+.+.|..|+++++|+.+-..|.+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3556677777888999999999999999999988754 7999999999999999999999988788889998886
Q ss_pred CC
Q 021950 162 FG 163 (305)
Q Consensus 162 ~~ 163 (305)
..
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 54
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.75 E-value=0.017 Score=55.07 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=61.0
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCCC
Q 021950 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i--~g~~i~v~~~~~~ 254 (305)
.+.|..-..+-.-|..+|+ .||.|.+++.+++ -.+|.|+|.+.+.|..|+++|+|+++ -|-..+|.+++.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCS-DYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHH-hhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444455667788999999 9999999999888 45799999999999999999999984 7788999998874
Q ss_pred CC
Q 021950 255 KT 256 (305)
Q Consensus 255 ~~ 256 (305)
.-
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.71 E-value=0.076 Score=36.70 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=44.4
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCCCCce--eeeeccCCCCCCC---CCCCCCceEEEcCCCcCCCHHHHHHHHh
Q 021950 126 GFIEFISRAGAERVLQTFNGTPMPNGEQN--FRLNWASFGAGEK---RDDTPDHTIFVGDLAADVTDYMLQETFR 195 (305)
Q Consensus 126 afV~f~~~~~A~~a~~~l~g~~~~~~~~~--i~~~~~~~~~~~~---~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 195 (305)
|+|+|.+..-|.+.++. ....+...+.. +++..-......+ ......++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999854 22222222333 3333222221111 2335578999999999999999998876
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.52 E-value=0.022 Score=48.77 Aligned_cols=80 Identities=9% Similarity=0.185 Sum_probs=59.0
Q ss_pred ceEEEcCCCcccCHHHHh---HhhhhcCCcEEEEEEEeCC-CCCcc--ceEEEEEcCHHHHHHHHHHhCCCCCCCCCcee
Q 021950 82 RTLWIGDLQYWMDETYLN---TCFAHTGEVVAVKVIRNKQ-TGQIE--GYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~-~~~~~--g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i 155 (305)
+-+||-+|+..+..+++. ++|.+||.|..|.+.++.. ..... .-+||+|...++|..||...+|..+ .++.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhhh
Confidence 568888998776555554 3688999999998888762 11111 1379999999999999999999988 45667
Q ss_pred eeeccCCC
Q 021950 156 RLNWASFG 163 (305)
Q Consensus 156 ~~~~~~~~ 163 (305)
++.+....
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77666544
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.38 E-value=0.27 Score=43.97 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g 243 (305)
.+..|+|-.+|..++-.||..++....-.|..++|++|.. -++-..+|+|.+.++|..-.+.+||+.|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3789999999999999999999874445688999999742 236678999999999999999999988743
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.10 E-value=0.06 Score=50.19 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
...+..++||+|+-..+.++-++.++. .+|.|.++.... |||+.|.....+.+|+..++...++|..+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 345678999999999999999999998 999998776642 8999999999999999999999999988877
Q ss_pred ccC
Q 021950 249 GPA 251 (305)
Q Consensus 249 ~~~ 251 (305)
.--
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.64 E-value=0.28 Score=43.81 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
.+.|+|-.+|..+|..||..+...+-. |.++++++|.. ..+-..+|.|.+.++|....+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 789999999999999999999886644 89999999642 23446899999999999999999999874
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.82 E-value=0.52 Score=31.52 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhhcCCC-----eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021950 184 DVTDYMLQETFRARYPS-----TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~-----i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~ 251 (305)
.++..+|..++. .-+. |-.|+|. ..|+||+-... .|..+++.|++..+.|+.++|+.+
T Consensus 12 g~~~~~iv~~i~-~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAIC-NEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHH-TCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHH-hccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 577888888887 4433 4456665 34789987765 788899999999999999999754
No 210
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.71 E-value=0.69 Score=44.26 Aligned_cols=15 Identities=0% Similarity=-0.066 Sum_probs=6.8
Q ss_pred ccEEEEEeCCHHHHH
Q 021950 216 KGYGFVRFGDESEQL 230 (305)
Q Consensus 216 ~g~afV~f~~~~~A~ 230 (305)
++.-.+.|-....++
T Consensus 604 r~~tLlh~iv~~i~e 618 (830)
T KOG1923|consen 604 RSMTLLHYIVLTIAE 618 (830)
T ss_pred cceeeeehhhHHHHH
Confidence 344445554444443
No 211
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.98 E-value=0.3 Score=40.80 Aligned_cols=129 Identities=16% Similarity=0.340 Sum_probs=72.3
Q ss_pred eEEEEEcCHHH----HHHHHHHhCCCCCCCCC--ceeee-------eccCCC-----------CCCCCCCCCCceEEEcC
Q 021950 125 YGFIEFISRAG----AERVLQTFNGTPMPNGE--QNFRL-------NWASFG-----------AGEKRDDTPDHTIFVGD 180 (305)
Q Consensus 125 ~afV~f~~~~~----A~~a~~~l~g~~~~~~~--~~i~~-------~~~~~~-----------~~~~~~~~~~~~l~v~n 180 (305)
.-||.|+-+-. ..+.+..|+|..+...| ..++| ++...- ..+-.......||++.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 67888865443 45556668888764332 22222 221110 00112234556888888
Q ss_pred CCcC------------CCHHHHHHHHhhcCCCeeEEEEEec-----CCCCCc-----ccEE---------EEEeCCHHHH
Q 021950 181 LAAD------------VTDYMLQETFRARYPSTKGAKVVID-----RLTGRT-----KGYG---------FVRFGDESEQ 229 (305)
Q Consensus 181 lp~~------------~~~~~l~~~f~~~~G~i~~i~i~~~-----~~~~~~-----~g~a---------fV~f~~~~~A 229 (305)
||-. -+++-|+..|+ .||.|..|.|..- .-+|+. .||+ ||+|-.-...
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~e-afg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgf 235 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFE-AFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGF 235 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHH-HhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhH
Confidence 8753 35788999999 9999998887531 113332 3333 3444444445
Q ss_pred HHHHHHhCCcee----cc----eeeEEccCCCC
Q 021950 230 LRAMTEMNGVFC----ST----RPMRIGPATNK 254 (305)
Q Consensus 230 ~~a~~~l~~~~i----~g----~~i~v~~~~~~ 254 (305)
..|+..|.|..+ +| -.++|+|.+++
T Consensus 236 a~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 236 AQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 556666666542 33 35777776554
No 212
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.97 E-value=0.46 Score=43.66 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhh--cCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHH
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 142 (305)
....+.|.|+.|+..+-.++|+.+|+. +-.+.+|.+-.+. -=||+|++..||..|.+.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAyky 231 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKY 231 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHH
Confidence 344566888999999999999999974 5567888887653 369999999999999764
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.40 E-value=0.65 Score=39.41 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=44.2
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
=|-|-+++.... ..|..+|++||.|++...- ....+-+|.|.+..+|++||.+ +|+.|.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~ 257 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIID 257 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeec
Confidence 355566665443 5678899999998776543 2234899999999999999965 888884
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.24 E-value=0.69 Score=36.98 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=43.6
Q ss_pred CHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhC--CCCCCCCCceeeeeccCCC
Q 021950 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQNFRLNWASFG 163 (305)
Q Consensus 94 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~~~~~~i~~~~~~~~ 163 (305)
..+.|+++|..++.+..+...+.- +-..|.|.+.+.|.+|...|+ +..+ .+..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcccc
Confidence 458899999999998888776542 258999999999999999988 7777 6677888877543
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=1.1 Score=41.54 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCceEEEcCCCcC-CCHHHHHHHHhhcC----CCeeEEEEEecCC----------CCC---------------------
Q 021950 171 TPDHTIFVGDLAAD-VTDYMLQETFRARY----PSTKGAKVVIDRL----------TGR--------------------- 214 (305)
Q Consensus 171 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~~----G~i~~i~i~~~~~----------~~~--------------------- 214 (305)
..+++|-|.|++|+ +.-+||.-+|+ .| |.|.+|.|..... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~n-SFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFN-SFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHH-hhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 46788999999997 78889988887 44 5788888753210 011
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCceecc--eeeEEccCCCCC
Q 021950 215 ----------------TKGYGFVRFGDESEQLRAMTEMNGVFCST--RPMRIGPATNKK 255 (305)
Q Consensus 215 ----------------~~g~afV~f~~~~~A~~a~~~l~~~~i~g--~~i~v~~~~~~~ 255 (305)
.-.||.|+|.+++.|.+....++|..+.. ..|-+.|.-...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 12479999999999999999999999854 455555544433
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.63 E-value=1.6 Score=29.15 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=34.9
Q ss_pred cccCHHHHhHhhhhcCC-----cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeec
Q 021950 91 YWMDETYLNTCFAHTGE-----VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 91 ~~~t~~~l~~~f~~~G~-----v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~ 159 (305)
..++..+|..++...+. |-.|.+..+ |+||+... +.|..+++.|++..+ .++.+++..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~--~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKI--KGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--S--SS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCC--CCeeEEEEE
Confidence 56788899999987644 556666543 89999776 578889999999999 667777654
No 217
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.07 E-value=2.2 Score=41.01 Aligned_cols=11 Identities=9% Similarity=-0.209 Sum_probs=5.0
Q ss_pred CceEEEcCCCc
Q 021950 81 IRTLWIGDLQY 91 (305)
Q Consensus 81 ~~~l~V~nLp~ 91 (305)
..++|-.-+++
T Consensus 385 ~~tvf~~~~De 395 (830)
T KOG1923|consen 385 KGTVFHELNDE 395 (830)
T ss_pred ccchhhhhhHH
Confidence 34555444443
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.82 E-value=0.22 Score=44.72 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCceEEEcCCCccc-CHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeee
Q 021950 80 EIRTLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 80 ~~~~l~V~nLp~~~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~ 158 (305)
+.+.|-+.-.+..+ +-.+|...|.+||.|..|.+-... --|.|+|.+..+|-+|- ...+..| .++.|++.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avl--nnr~iKl~ 441 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIKLF 441 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-cccccee--cCceeEEE
Confidence 34455555555444 678899999999999999876542 25999999999997666 4578888 78999999
Q ss_pred ccCCC
Q 021950 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
|....
T Consensus 442 whnps 446 (526)
T KOG2135|consen 442 WHNPS 446 (526)
T ss_pred EecCC
Confidence 98764
No 219
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=88.32 E-value=3.3 Score=31.64 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=59.4
Q ss_pred CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCCCCCCCCCC
Q 021950 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265 (305)
Q Consensus 186 ~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~ 265 (305)
+|.+|+..| -|.-+..+.+.... ....+-++.+.+.. ...++..+.++.+.|+.|.|.....-.. ...
T Consensus 1 ~e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~------~~~ 68 (145)
T PF13689_consen 1 KEYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNE------ISG 68 (145)
T ss_pred CHHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcc------ccc
Confidence 356777777 36666666665442 22445666666665 4456778889999999999987643222 367
Q ss_pred cceEEeCCcchhhhHHHHhhc
Q 021950 266 GTFLVVGTGFCLQIKFKFKYF 286 (305)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~~~ 286 (305)
+..++++.....+..+.++..
T Consensus 69 C~ilyi~~~~~~~~~~i~~~~ 89 (145)
T PF13689_consen 69 CHILYISSSESSQLPEILRKL 89 (145)
T ss_pred ccEEEECCCChHHHHHHHHhc
Confidence 889999988776665555543
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.27 E-value=2.3 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=38.4
Q ss_pred cccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021950 91 YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 91 ~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 148 (305)
..++-++++..+..|+- .+|..|+ + | -||.|.+..+|+++....+|..+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEE
Confidence 35677999999999963 2444554 2 2 58999999999999999888876
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=85.30 E-value=2.1 Score=36.39 Aligned_cols=84 Identities=5% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecC-------CCCCcccEEEEEeCCHHHHHHH----HHHhC
Q 021950 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-------LTGRTKGYGFVRFGDESEQLRA----MTEMN 237 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~-------~~~~~~g~afV~f~~~~~A~~a----~~~l~ 237 (305)
+.-.++.|.+.|+..+++-..+...|. +||.|++|.++.+. +..+......+-|-+.+.+..- ++.|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344577899999999999999999998 99999999998764 1122345678999999987754 34444
Q ss_pred C--ceecceeeEEccCCC
Q 021950 238 G--VFCSTRPMRIGPATN 253 (305)
Q Consensus 238 ~--~~i~g~~i~v~~~~~ 253 (305)
. ..+....|++.|..-
T Consensus 90 EfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHhcCCcceeEEEEEE
Confidence 3 337777888877653
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.62 E-value=6.2 Score=33.37 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCe-eEEEEEecCCCCCcccEEEEEeCCHH
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDES 227 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i-~~i~i~~~~~~~~~~g~afV~f~~~~ 227 (305)
...|+++||+.++.-.||+..+. +-|.+ .++.+.-. .|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr-~~~~~pm~iswkg~------~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELR-KRECTPMSISWKGH------FGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHH-hcCCCceeEeeecC------CcceeEecCCcc
Confidence 45699999999999999999998 65543 34444322 567999997753
No 223
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=83.29 E-value=4.1 Score=36.23 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=5.4
Q ss_pred CHHHHHHHHh
Q 021950 186 TDYMLQETFR 195 (305)
Q Consensus 186 ~~~~l~~~f~ 195 (305)
|.+|....|-
T Consensus 471 tkDDaY~~FM 480 (487)
T KOG4672|consen 471 TKDDAYNAFM 480 (487)
T ss_pred cchHHHHHHH
Confidence 5555555553
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=8.3 Score=34.28 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCe-eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i-~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
..-...|-|.++|.....+||...|+ .|+.- .+|.++.| ..||..|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 34567899999999999999999998 88763 34566555 3799999999999999975
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.65 E-value=6.7 Score=26.91 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=43.4
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
-|.-.++.+.+..++++.++..||. |.+|....-. .+ ..-|+|++..-++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 4455668889999999999966875 6677766554 22 345999999999998886654
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.30 E-value=2.5 Score=32.41 Aligned_cols=116 Identities=13% Similarity=-0.004 Sum_probs=68.5
Q ss_pred EEEcCCC--cccCHHHHhHhhhh-cCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeecc
Q 021950 84 LWIGDLQ--YWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 84 l~V~nLp--~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~ 160 (305)
..||.+- ...+...|...+.. ++....+.+..- ..++..+.|.+++++.++++. ....+ .+..+.+..-
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~--~~~~~~l~~W 89 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNF--NGHFLILQRW 89 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccc--cccchhhhhh
Confidence 4455442 34567777777754 343323333332 125899999999999998842 22233 3444444433
Q ss_pred CCCCC--CCCCCCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEe
Q 021950 161 SFGAG--EKRDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVI 208 (305)
Q Consensus 161 ~~~~~--~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~ 208 (305)
..... ...-.....-|.|.|||.. .+++-++++.+ .+|.+..++...
T Consensus 90 ~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~t 139 (153)
T PF14111_consen 90 SPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDENT 139 (153)
T ss_pred cccccccccceeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcCC
Confidence 32111 1111223455788899998 57777888887 999998776643
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=9.3 Score=35.73 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCCc-ccCHHHHhHhhhhc----CCcEEEEEEEeCC----------CCC---------------------
Q 021950 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHT----GEVVAVKVIRNKQ----------TGQ--------------------- 121 (305)
Q Consensus 78 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~v~~~~i~~~~~----------~~~--------------------- 121 (305)
...+++|-|-|+.| .+...+|.-+|+.| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999995 56899999998876 4688888764221 111
Q ss_pred ----------------ccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccC
Q 021950 122 ----------------IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 122 ----------------~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~ 161 (305)
..-||.|+|.+.+.|.+..+.++|..+...+..+.+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1237889999999999999999999998777777776654
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=79.39 E-value=9.5 Score=25.68 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=43.4
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
.-|+-.++.+.+..+|++.++..||. |.+|....-. .+ ..-|||++..-++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 35566778899999999999866775 6666665543 22 345999999988888876554
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.37 E-value=6.8 Score=34.80 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=50.0
Q ss_pred CCCCCCCCCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHH
Q 021950 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (305)
Q Consensus 73 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 141 (305)
....+.+-...|=|.++|.....+||...|+.|+. =-+|+++-|. .||..|.+...|..||.
T Consensus 383 ~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 383 PLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred CCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 33445556778999999999988999999999976 3466777665 69999999999999984
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=78.61 E-value=2.3 Score=33.42 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=35.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecce-eeEEccCCCCCCCC
Q 021950 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTR-PMRIGPATNKKTVS 258 (305)
Q Consensus 216 ~g~afV~f~~~~~A~~a~~~l~~~~i~g~-~i~v~~~~~~~~~~ 258 (305)
.+.-.|.|.+.+.|.+|..++++..|.|. .++.-|+.......
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES 94 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc
Confidence 45567899999999999999999999888 88888887755443
No 231
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.66 E-value=4.7 Score=26.42 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCC
Q 021950 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~ 255 (305)
++|.+.|.+..-.|..+.-+....++.....-||+.+...+...++ +=..+++..|+|.....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCCC
Confidence 4677777733335777777777666777778888888776644443 3366899999998866543
No 232
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.38 E-value=2.7 Score=42.43 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=16.6
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCc
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEV 108 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v 108 (305)
...++++|--+-..+-.+.|+.+.+.++..
T Consensus 70 ~kak~~~v~t~ka~~PpeHLrki~~~~sdm 99 (2365)
T COG5178 70 NKAKTLHVLTLKAPIPPEHLRKIQSPCSDM 99 (2365)
T ss_pred hhhhheeeeccCCCCCHHHHHhhhCccccc
Confidence 344555555555555666666655555443
No 233
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=73.39 E-value=3.5 Score=41.69 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=17.4
Q ss_pred ceEEEcCCC--cccCHHHHhHhhhhcCCcEEEEEEEeC
Q 021950 82 RTLWIGDLQ--YWMDETYLNTCFAHTGEVVAVKVIRNK 117 (305)
Q Consensus 82 ~~l~V~nLp--~~~t~~~l~~~f~~~G~v~~~~i~~~~ 117 (305)
++-|+|-|. +..-.+-|.++=..+-.+..+++...-
T Consensus 108 krs~lgalkylPhavlkLLeNmP~pWe~~~evkvlyh~ 145 (2365)
T COG5178 108 KRSYLGALKYLPHAVLKLLENMPSPWEDVSEVKVLYHC 145 (2365)
T ss_pred hHhhhhhhhhchHHHHHHHhcCCChHhhhheeeEEeec
Confidence 445555553 122233333333444556677776653
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.80 E-value=20 Score=24.59 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=43.3
Q ss_pred eEEEcCCCcccCHHHHhHhhhh-cCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021950 83 TLWIGDLQYWMDETYLNTCFAH-TGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 143 (305)
.-|+-.++.+++..++++.++. ||. |.+|....-+. + .-=|||.+...++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 4566677899999999999987 554 77777665542 2 224999999999998887654
No 235
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=68.76 E-value=16 Score=26.55 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=59.7
Q ss_pred CCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCCCCCCCC
Q 021950 89 LQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR 168 (305)
Q Consensus 89 Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (305)
||+-+ +.|.++|+.=|.|.++..+..- .+ + .|+-.++|..-...+. |++.-.......+-
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqy-------------pd-n---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQY-------------PD-N---DALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEecc-------------CC-c---hhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 55544 5689999999999888665432 11 1 1222334432211222 55543332211111
Q ss_pred CC--CCCceEEEcCCCcCCCHHHHHHHHhh--cCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021950 169 DD--TPDHTIFVGDLAADVTDYMLQETFRA--RYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 169 ~~--~~~~~l~v~nlp~~~~~~~l~~~f~~--~~G~i~~i~i~~~~~~~~~~g~afV~f~~~ 226 (305)
.. ..+..+ --|+.+|..+++++|++ .|-.|.+-.+.+|-.-.-+-..||.-|...
T Consensus 71 ~gTPsgnnv~---F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVI---FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCcee---cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11 111222 23678899999999973 244455444555533333455788877654
No 236
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=67.50 E-value=23 Score=25.81 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHhhcCCCeeEEE----EEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 184 DVTDYMLQETFRARYPSTKGAK----VVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~i~----i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
.++.+||++-+.+.|-.-.++. +-..-..|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4678888888876665533333 3334456788888866 677666553
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.00 E-value=13 Score=31.57 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCc-EEEEEEEeCCCCCccceEEEEEcCHH
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRA 134 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~~~g~afV~f~~~~ 134 (305)
...-||++||+.++...||+..+.+.+.+ .++.+. -..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 34559999999999999999999887653 333332 23457999997653
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=61.84 E-value=37 Score=22.84 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=42.6
Q ss_pred eEEEcCCCcccCHHHHhHhhhh-cCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021950 83 TLWIGDLQYWMDETYLNTCFAH-TGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 143 (305)
.-|+-.++.+++..++++.++. ||. |.++....-+. + .-=|||.+...+.|...-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 4677778899999999999987 553 66666655432 2 124999999999888876554
No 239
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=59.29 E-value=37 Score=25.91 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=40.9
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
.-|+-.++...+..+|++.++..|+. |..|..+.-. .| ..-|||++....+|......+
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g--~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DG--LKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 35555678889999999999866765 5566655543 23 335999998887776655443
No 240
>PHA03378 EBNA-3B; Provisional
Probab=58.62 E-value=56 Score=31.58 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=12.1
Q ss_pred CceEEEcCCC--cccCHHHHhHhhh
Q 021950 81 IRTLWIGDLQ--YWMDETYLNTCFA 103 (305)
Q Consensus 81 ~~~l~V~nLp--~~~t~~~l~~~f~ 103 (305)
...|...-++ ..-+..-|++++.
T Consensus 806 ~~q~~~~~~~gq~gp~k~ilrqllt 830 (991)
T PHA03378 806 SMQLMPRAAPGQQGPTKQILRQLLT 830 (991)
T ss_pred cceecCCCCccccCcHHHHHHHHhh
Confidence 3445444444 3345666666654
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.43 E-value=21 Score=26.21 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=24.6
Q ss_pred cCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHH
Q 021950 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135 (305)
Q Consensus 93 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~ 135 (305)
++.++|.+.|+.|..+ .++...++ .-..|++.|+|...-.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChH
Confidence 3568899999999887 46666665 3567899999976443
No 242
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=56.13 E-value=71 Score=28.93 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=2.8
Q ss_pred eeeEEcc
Q 021950 244 RPMRIGP 250 (305)
Q Consensus 244 ~~i~v~~ 250 (305)
|+|.|+|
T Consensus 495 RRiavey 501 (518)
T KOG1830|consen 495 RRIAVEY 501 (518)
T ss_pred HHHHHHh
Confidence 3333433
No 243
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.24 E-value=2.3e+02 Score=28.33 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=12.2
Q ss_pred CCCCceEEEcCCCcCCCHH
Q 021950 170 DTPDHTIFVGDLAADVTDY 188 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~ 188 (305)
..+..-+||-.+.....+.
T Consensus 292 P~Pavy~FliDVS~~a~ks 310 (887)
T KOG1985|consen 292 PQPAVYVFLIDVSISAIKS 310 (887)
T ss_pred CCCceEEEEEEeehHhhhh
Confidence 3455667777777666555
No 244
>PHA03378 EBNA-3B; Provisional
Probab=55.19 E-value=1.4e+02 Score=29.11 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.3
Q ss_pred EEEcCC
Q 021950 84 LWIGDL 89 (305)
Q Consensus 84 l~V~nL 89 (305)
|..|++
T Consensus 828 lltggv 833 (991)
T PHA03378 828 LLTGGV 833 (991)
T ss_pred Hhhccc
Confidence 333433
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=54.60 E-value=18 Score=26.56 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=27.5
Q ss_pred eEEEcCCCcCC---------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHH
Q 021950 175 TIFVGDLAADV---------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (305)
Q Consensus 175 ~l~v~nlp~~~---------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~ 228 (305)
++.|.|++.+. +.++|.+.|. .|..++ ++.+.+. . -..|+++|+|.+.-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~-~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLA-EFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHH-H---SE-EEEEEET-T-EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHH-hcCCce-eEECcCC-C-CCcEEEEEEECCChH
Confidence 45566664433 4578999998 798876 6666664 2 448899999977543
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.35 E-value=2.4 Score=39.14 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=53.0
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
..++|++.|+.++++-.+|..+++.+-.+..+.+..+........+.+|+|.-.-....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4577999999999999999999998866666555443333455667899998777777777777877663
No 247
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=52.28 E-value=29 Score=22.76 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCC
Q 021950 188 YMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 188 ~~l~~~f~~~~G-~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~ 255 (305)
++|.+.|+ ..| .+..++-+....+...-.+-+|+.....+-.. .++=+.++|+++.|+....+.
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 35677777 566 47777777776666667777888766543333 344466899999998765443
No 248
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.41 E-value=2.3 Score=39.27 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=54.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~ 244 (305)
..+.|++.|+..+++..+|..+++ .+-.+..+.+..+........++.|+|+-.-.-..|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck-~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCK-GIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhc-cCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 356799999999999999999998 887777666654433344466788999877777777777777665443
No 249
>PRK11901 hypothetical protein; Reviewed
Probab=50.38 E-value=35 Score=29.79 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEE--EeCCHHHHHHHHHHhCC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV--RFGDESEQLRAMTEMNG 238 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV--~f~~~~~A~~a~~~l~~ 238 (305)
...+|-|..+ .+++.|..+.. +.+ +..+++.....+|+.. |.+| .|.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~-~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAK-KQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHH-HcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3456666553 45777888886 665 4556665554455533 4443 79999999999998753
No 250
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.16 E-value=23 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=23.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
.+.+|.|.+..+|.+|-+.|....+..+-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 368999999999999999887765554443
No 251
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.32 E-value=9 Score=34.15 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCCceEEEcCCCcccCHH--------HHhHhhhh--cCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHH
Q 021950 79 GEIRTLWIGDLQYWMDET--------YLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 141 (305)
...+.+|+.+.....+.+ ++...|.. .+.+..++..++..+..++|..|++|...+.+.+++.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345778888887655555 88888987 6778888988887677889999999999999998874
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.07 E-value=48 Score=28.97 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHh
Q 021950 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195 (305)
Q Consensus 126 afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 195 (305)
|||+|++..+|..|++.+.... ...+++..+.. ...|.=.||.....+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APe----------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPE----------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCC----------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999998654332 23345554432 23455578877777776666654
No 253
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=45.97 E-value=18 Score=24.64 Aligned_cols=56 Identities=23% Similarity=0.397 Sum_probs=33.2
Q ss_pred cceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCCCCCCCCCCCCCceEEEcCC-------------CcCCCHHH
Q 021950 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDL-------------AADVTDYM 189 (305)
Q Consensus 123 ~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~v~nl-------------p~~~~~~~ 189 (305)
..||.|+|.-.++. .++. ..|.+|. +....+.|||.+. ..+-+.|+
T Consensus 8 d~y~VV~~~~~~~~-~~l~-~gGyEIV-------------------DK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~Ee 66 (85)
T PF12091_consen 8 DNYCVVEFPPDAGH-PALA-RGGYEIV-------------------DKNARREIFIDGSWAEMFREDVQALIASEPTQEE 66 (85)
T ss_pred CceEEEEecCCCCc-cchh-cCCcEEe-------------------ecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHH
Confidence 34999999533332 3332 2555552 2233577888773 44567778
Q ss_pred HHHHHhhcCCC
Q 021950 190 LQETFRARYPS 200 (305)
Q Consensus 190 l~~~f~~~~G~ 200 (305)
+.+++. .|..
T Consensus 67 vDdfL~-~y~~ 76 (85)
T PF12091_consen 67 VDDFLG-GYDA 76 (85)
T ss_pred HHHHHH-HHHH
Confidence 888876 6644
No 254
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.78 E-value=12 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhh
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCF 102 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f 102 (305)
.-..++|.|.|||..+.+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3456899999999999999998764
No 255
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.75 E-value=24 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021950 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 219 afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~~ 257 (305)
|||+|++..+|..|++.+.... ++.+++..+-+.++-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999999765543 345566666554443
No 256
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.33 E-value=58 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCCCeeEEEEE
Q 021950 188 YMLQETFRARYPSTKGAKVV 207 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~ 207 (305)
.+|+++|+ ..|.|.-+.+.
T Consensus 9 ~~iR~~fs-~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFS-QLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHH-hcCcEEEEEEc
Confidence 68999999 99999755543
No 257
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=43.26 E-value=36 Score=26.95 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=37.6
Q ss_pred CceEEEcCCCcccCHHHHhHhhh-hcCCcEEEEEEEeCCC-CCccceEEEEEcCHHHHHHHHHH
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQT 142 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~ 142 (305)
.+++|.. .|+++|.++.. .-|.+..+.+.+.... ...+|--||+|.+.+.|.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566665 45555555432 1167878777665321 25678899999999999987754
No 258
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=43.19 E-value=77 Score=22.51 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHhhcCCCeeEEEEEec----CCCCCcccEEEEEeCCHHHHHH
Q 021950 184 DVTDYMLQETFRARYPSTKGAKVVID----RLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~i~i~~~----~~~~~~~g~afV~f~~~~~A~~ 231 (305)
..+..+|++.+...|+.=.+..++.. -..|.+.|||.| |+|.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888888767775333333332 223455555544 566665544
No 259
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=41.94 E-value=89 Score=23.47 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHhhcCC-CeeEEEEE----ecCCCCCcccEEEEEeCCHHHHH
Q 021950 184 DVTDYMLQETFRARYP-STKGAKVV----IDRLTGRTKGYGFVRFGDESEQL 230 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G-~i~~i~i~----~~~~~~~~~g~afV~f~~~~~A~ 230 (305)
..+..+|++.+...|+ .=.+..++ ..-..|.+.|||.| |+|.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5688899998887888 22222222 22234556666644 55555544
No 260
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.16 E-value=19 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCcCCCHH--------HHHHHHhhc--CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021950 171 TPDHTIFVGDLAADVTDY--------MLQETFRAR--YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~--------~l~~~f~~~--~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
..-+.+|+.++......+ ++...|. . .+.+..++..++..+..++|.-|++|+....|.+.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p-~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFP-PHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCC-CcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 344667777777765544 8999998 7 6778888888887778889999999999999998864
No 261
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.62 E-value=5.1 Score=36.03 Aligned_cols=78 Identities=5% Similarity=-0.202 Sum_probs=59.5
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
.+.++..++...+++++.-.|. -||.|.-+.....-..+..+-.+||.-.+ .+|..|++.+.-..+.|..++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~-d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHE-DPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhcc-CCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567888999999999999998 99999988777665556666678877654 466777776666667777788777655
No 262
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.04 E-value=55 Score=21.38 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHhHhhhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCceeeeeccCC
Q 021950 96 TYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (305)
Q Consensus 96 ~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~~~~~~~ 162 (305)
++|.+.|...|- |..+.-+..+.++..-..-||+++...+...+ ++=..+ ++..|++.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l--~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTL--CGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhh--CCeEEEEecCCC
Confidence 567888888885 66666666665566667889998876553333 233445 567788876653
No 263
>PRK10905 cell division protein DamX; Validated
Probab=39.80 E-value=74 Score=27.77 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEE--EEeCCHHHHHHHHHHhC
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF--VRFGDESEQLRAMTEMN 237 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~af--V~f~~~~~A~~a~~~l~ 237 (305)
...+|-|+.+. +++.|+++.. +.| +....+.....+|+.. |-+ =.|.+.++|++|+..|-
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fak-Klg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAK-KEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHH-HcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 34566666544 4577777776 665 3444444444455422 332 37899999999999875
No 264
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=39.43 E-value=30 Score=32.01 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=14.8
Q ss_pred CceEEEcCCCcccCHHHHhHhhhh
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAH 104 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~ 104 (305)
..++|-.-=+-.++...|..+|+.
T Consensus 306 ~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 306 CATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cchhhhccCcceecHHHHHHHHHH
Confidence 344444333456788888899864
No 265
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=38.02 E-value=21 Score=32.33 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=8.5
Q ss_pred EEEEeCCHHHHHHH
Q 021950 219 GFVRFGDESEQLRA 232 (305)
Q Consensus 219 afV~f~~~~~A~~a 232 (305)
-|++|.-.|.....
T Consensus 453 Dy~EfpvPEQfkt~ 466 (480)
T KOG2675|consen 453 DYVEFPVPEQFKTK 466 (480)
T ss_pred CcccccChHHHhhh
Confidence 36777777665443
No 266
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.91 E-value=1.3e+02 Score=23.03 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=39.1
Q ss_pred eEEEcCCCcccCHHHHhHhhhh-cCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHH
Q 021950 83 TLWIGDLQYWMDETYLNTCFAH-TGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (305)
Q Consensus 83 ~l~V~nLp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 142 (305)
.-|+-.++..++..+|++.++. |+. |..|..+.-+. |. -=|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHh
Confidence 4566667889999999999986 553 56665555432 22 2499999887776655444
No 267
>PF14893 PNMA: PNMA
Probab=35.14 E-value=23 Score=31.17 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhh-cCCcEEEEEEEe---CCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 79 GEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRN---KQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~i~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
+..+.|.|.+||.++++++|++.+.. .-.+-..++... +..+ ..-++|+|...-+-.. -=..|.|+|-.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~-----iP~~i~g~gg~ 88 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSL-----IPREIPGKGGP 88 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhh-----CchhcCCCCCc
Confidence 55688999999999999999998754 212222222211 1111 2357888865333211 22345566666
Q ss_pred eeeeccC
Q 021950 155 FRLNWAS 161 (305)
Q Consensus 155 i~~~~~~ 161 (305)
++|-+..
T Consensus 89 W~Vv~~p 95 (331)
T PF14893_consen 89 WRVVFKP 95 (331)
T ss_pred eEEEecC
Confidence 6665544
No 268
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.06 E-value=35 Score=28.23 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEE
Q 021950 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~ 111 (305)
...+..+||+-|+|...|++.|..+.+.+|-+...
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45677899999999999999999999999865443
No 269
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.14 E-value=1.3e+02 Score=28.19 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=46.8
Q ss_pred CCCCceEEEcCCCcCCCH---HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021950 170 DTPDHTIFVGDLAADVTD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~---~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i 246 (305)
..+..-=.||||..-... .-+.++-+ +||.|..+++-. .-.|.-.+.+.|..|+.. ++..+.+|..
T Consensus 29 PGP~~lPiIGnl~~l~~~~~h~~~~~ls~-~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 29 PGPPPLPIIGNLHQLGSLPPHRSFRKLSK-KYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cCCCCCCccccHHHcCCCchhHHHHHHHH-HhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 344455667887664433 34444444 999999887732 236888999999999986 8888988886
No 270
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.11 E-value=39 Score=30.05 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEEeCCC--CCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021950 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 80 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (305)
....|.|..||...++.+|.+.+..+-. +....+.....+ ..-.+.|||.|...++.......++|..+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567899999999999999988877543 323333321111 122467899999999988888778887653
No 271
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=34.02 E-value=1.1e+02 Score=20.87 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 215 TKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 215 ~~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
-+||-||+=.+..+..+|++.+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 489999999999999999988766543
No 272
>PRK11901 hypothetical protein; Reviewed
Probab=33.99 E-value=3.3e+02 Score=23.99 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=40.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEE--EEEcCHHHHHHHHHHhCC
Q 021950 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGF--IEFISRAGAERVLQTFNG 145 (305)
Q Consensus 78 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~af--V~f~~~~~A~~a~~~l~g 145 (305)
.....+|-|..+ .+++.|..|.++++ +..+++.+...+|+. .|.. =.|.+.++|+.|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 344455555543 56788888888876 345666554433433 2433 369999999999988643
No 273
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=33.65 E-value=2.7e+02 Score=26.66 Aligned_cols=82 Identities=11% Similarity=0.257 Sum_probs=50.2
Q ss_pred eEEEEEcCHHHHHHHHHHhCCCCCCCCCceee--------------eeccCCCCC---CCCCCCCCceEEEcCCCcCCCH
Q 021950 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFR--------------LNWASFGAG---EKRDDTPDHTIFVGDLAADVTD 187 (305)
Q Consensus 125 ~afV~f~~~~~A~~a~~~l~g~~~~~~~~~i~--------------~~~~~~~~~---~~~~~~~~~~l~v~nlp~~~~~ 187 (305)
-||+++.++.--+-..+.|+...+.. -.|+ +.|+....- -+.+......+|+.+|..++-+
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmys--G~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYS--GEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhc--ccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 59999999888777776666655422 1111 111211100 0133445788999999988888
Q ss_pred HHHHHHHhhcCCCeeEEEEEec
Q 021950 188 YMLQETFRARYPSTKGAKVVID 209 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~~~ 209 (305)
+-=.+++. ..-.++.+.|.+.
T Consensus 316 dVQ~~~ir-sipGlEna~i~rp 336 (621)
T COG0445 316 DVQEQIIR-SIPGLENAEILRP 336 (621)
T ss_pred HHHHHHHH-hCcccccceeecc
Confidence 76666665 5556777777643
No 274
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.38 E-value=2.3e+02 Score=28.60 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=3.9
Q ss_pred EEEEeeeec
Q 021950 293 IIIFFNIST 301 (305)
Q Consensus 293 ~~~~~~~~~ 301 (305)
+|-|||+++
T Consensus 467 tvhFfnl~s 475 (1007)
T KOG1984|consen 467 TVHFFNLSS 475 (1007)
T ss_pred eeEeeccCc
Confidence 344444443
No 275
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=32.90 E-value=43 Score=30.80 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=5.6
Q ss_pred eEEEEEcCHH
Q 021950 125 YGFIEFISRA 134 (305)
Q Consensus 125 ~afV~f~~~~ 134 (305)
-|+|.|.+..
T Consensus 125 ~GlIAY~~~~ 134 (465)
T PF01690_consen 125 DGLIAYDNSS 134 (465)
T ss_pred eeeEEecCcc
Confidence 4566665544
No 276
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=32.29 E-value=1.3e+02 Score=18.63 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=38.9
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH----HHHHHHHHH
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE----SEQLRAMTE 235 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~----~~A~~a~~~ 235 (305)
++.|.|+.=.--...+.+.+. ..-.|.++.+... .+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~-~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALS-KLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHh-cCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 467777777777889999998 7878888887554 35678888754 455555554
No 277
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.55 E-value=1.8e+02 Score=20.14 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021950 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 187 ~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
.+.+++++++..|+++++.+.. |.-.....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 4667888885567788887764 4446678899999999988876554
No 278
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=31.35 E-value=1.3e+02 Score=20.45 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=25.7
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC----HHHHHHHHHHhCCceecceeeEEc
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~----~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
+.++++..+-.. ++...++ +-..|-++.| +|.++ -|||-|+. .+.-.++++.+....+.-+.|.|.
T Consensus 3 lkfg~It~eeA~-~~QYeLs-k~~~vyRvFi-----NgYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELS-KNEAVYRVFI-----NGYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTT-TTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHH-HHHHHhh-cccceeeeee-----ccccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 344555444222 3344455 6667766666 45544 58999974 578888888888888888888775
No 279
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=2.7e+02 Score=25.30 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCc-ccCHHHHhHhhhhc----CCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 021950 77 QPGEIRTLWIGDLQY-WMDETYLNTCFAHT----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (305)
Q Consensus 77 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (305)
+...+..|-|-|+.+ .+...+|.-.|+.| |.+..|.|.... |..+.-| .+...|-.-+..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse------------fGkeRm~---~e~vqGpprdif 206 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE------------FGKERMA---AEHVQGPPRDIF 206 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh------------hhHHHHh---HhhccCCchhhc
Confidence 456678899999985 56788888888766 456667665542 3322222 222333211000
Q ss_pred ----CceeeeeccCCCCCCCCCCCCCceEEE-cCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021950 152 ----EQNFRLNWASFGAGEKRDDTPDHTIFV-GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 152 ----~~~i~~~~~~~~~~~~~~~~~~~~l~v-~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~ 226 (305)
...-.-.+..... ..+...+.-++| +.+..+++-..|+++- +.++++ .||.|++.+.
T Consensus 207 ~~~d~~~ssqk~~~dn~--~sd~d~g~d~~~Egd~g~e~d~~~lrqyq------lerlry----------YyAvvec~d~ 268 (622)
T COG5638 207 TPADNQPSSQKFGDDNV--FSDRDAGEDALIEGDRGNEFDMVKLRQYQ------LERLRY----------YYAVVECEDI 268 (622)
T ss_pred cccccCcchhccCCccc--hhhhhcchhhhhhcccccchhHHHHHHHH------hhhhee----------EEEEEEeccc
Confidence 0000000000000 000111122233 2233344444454442 222332 4899999999
Q ss_pred HHHHHHHHHhCCceecc--eeeEEccC
Q 021950 227 SEQLRAMTEMNGVFCST--RPMRIGPA 251 (305)
Q Consensus 227 ~~A~~a~~~l~~~~i~g--~~i~v~~~ 251 (305)
+.+......++|..+.. ..+-+.|.
T Consensus 269 ~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 269 ETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhHHHHhccCccccccccceeeeeec
Confidence 99999999999987643 34444443
No 280
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=29.98 E-value=1.8e+02 Score=19.82 Aligned_cols=48 Identities=8% Similarity=0.158 Sum_probs=24.3
Q ss_pred cCCCHHHHHHHHhhcCCCeeE----EEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021950 183 ADVTDYMLQETFRARYPSTKG----AKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~----i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
...+..+|++.+...|+.=.+ ..+......+.+.|||.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 456777888887756665111 222333334455555544 566665543
No 281
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.48 E-value=1.3e+02 Score=20.03 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=41.3
Q ss_pred cCCCcCCCHHHHHHHHhhcCCCe-eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021950 179 GDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 179 ~nlp~~~~~~~l~~~f~~~~G~i-~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v 248 (305)
-.++..++-++|++.....||.. ..+.+..-...| -.|...+.++-..|++..... +++.+++
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl 79 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAKES--GSKTLRL 79 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHHHC--TTSCEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHHhc--CCCcEEE
Confidence 45667778888888877677764 334444332233 479999999999999876533 3344444
No 282
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.22 E-value=4.2e+02 Score=23.42 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=40.7
Q ss_pred CceEEEcCCCcccCHHHHhHh-----------hhhcCC-cEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021950 81 IRTLWIGDLQYWMDETYLNTC-----------FAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~-----------f~~~G~-v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 148 (305)
.+.|.| ++.+.-|..+|+.. .++||- ..+|.++.|..+ -.+.-.+...-+.|+..|-..--
T Consensus 64 rrAvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~------s~~~~PT~~Nir~Al~wLV~~aq 136 (362)
T KOG1546|consen 64 RRAVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE------SPVRIPTGKNIRRALRWLVESAQ 136 (362)
T ss_pred ceEEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC------cccccCcHHHHHHHHHHHHhcCC
Confidence 345555 47777778887753 467776 566777776432 12233556666667665421111
Q ss_pred CCCCceeeeeccCCC
Q 021950 149 PNGEQNFRLNWASFG 163 (305)
Q Consensus 149 ~~~~~~i~~~~~~~~ 163 (305)
-+-.+-+.++-..
T Consensus 137 --~gD~LvfHYSGHG 149 (362)
T KOG1546|consen 137 --PGDSLVFHYSGHG 149 (362)
T ss_pred --CCCEEEEEecCCC
Confidence 2344555555443
No 283
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=28.18 E-value=1.2e+02 Score=29.15 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=36.8
Q ss_pred HHHHHHHH---hhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021950 187 DYMLQETF---RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 187 ~~~l~~~f---~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
.-||..+| +..+|.|.++.+...+. -..+..+++.|.+.++|.+|+..+.
T Consensus 280 g~dL~~l~~GseGtLGIIT~~tlrl~p~-P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 280 GYDLTRLVIGSEGTLGVITEVTLRLQKI-PQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CccHHHHhccCCCceEEEEEEEEEeecC-CcceEEEEEEcCCHHHHHHHHHHHH
Confidence 35788887 33688899988865542 2335678899999999999887754
No 284
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=26.73 E-value=2e+02 Score=19.22 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=47.2
Q ss_pred EcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 178 v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
|--++..+.-+||.......||.-.++.+..+. -.|-..+.++-.+|++.++. .-..+.|+|-
T Consensus 13 Ii~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~-s~~~ksLRil 75 (79)
T cd06405 13 IIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDR-SPHMKSLRIL 75 (79)
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHcc-CccccceeEe
Confidence 445678888899998888899999888775331 56888999999999998775 4444455543
No 285
>PRK10905 cell division protein DamX; Validated
Probab=26.70 E-value=1.4e+02 Score=26.18 Aligned_cols=59 Identities=20% Similarity=0.118 Sum_probs=36.5
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceE--EEEEcCHHHHHHHHHHhC
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYG--FIEFISRAGAERVLQTFN 144 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~a--fV~f~~~~~A~~a~~~l~ 144 (305)
..+|-|+.+ .+++.|+++..+.|. ....+.....+|+. .|- +=.|.+.++|++|+..|-
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCC
Confidence 344555544 566888888888764 33334444333432 132 336999999999998863
No 286
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.49 E-value=64 Score=26.76 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=29.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEE
Q 021950 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~ 205 (305)
.....+||+-|+|...+++-|.++.+ ..|.+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vs-qlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVS-QLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHH-Hhhhhhhee
Confidence 34468899999999999999999998 888665443
No 287
>CHL00030 rpl23 ribosomal protein L23
Probab=26.29 E-value=2.3e+02 Score=19.81 Aligned_cols=35 Identities=6% Similarity=-0.049 Sum_probs=25.8
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEec
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~ 209 (305)
.-|+-.++.+.+..+|++.++..||. |..|....-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 35566678899999999999866875 556665544
No 288
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=3.1e+02 Score=26.45 Aligned_cols=99 Identities=9% Similarity=-0.008 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cce-----e-cceeeEEccCCCCCCCC
Q 021950 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVF-----C-STRPMRIGPATNKKTVS 258 (305)
Q Consensus 187 ~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~-----i-~g~~i~v~~~~~~~~~~ 258 (305)
.++|.+.|. .-+.|.++.+.- -||=.+......-+......+. +.. + .|++|-|+|+.+.-...
T Consensus 60 A~~i~~~l~-~~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkp 131 (577)
T COG0018 60 AEEIAEKLD-TDEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGP 131 (577)
T ss_pred HHHHHHhcc-ccCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCC
Confidence 355666665 444677777731 2344444444334444444443 222 2 57899999988754442
Q ss_pred CCCCCCCcceEEeCCcchhhhHHHHhhccceeeEEEEEeeee
Q 021950 259 GQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNIS 300 (305)
Q Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 300 (305)
--....++-.+| ....++.+|.||-.....|+|=.
T Consensus 132 --lHiGHlR~aiiG-----DsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 132 --LHIGHLRNAIIG-----DSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred --cccchhhhhHHH-----HHHHHHHHHcCCCeeEEeeECcH
Confidence 112222222333 33788889999999999998843
No 289
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=25.39 E-value=2.1e+02 Score=18.87 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=39.6
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCCe-eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~i-~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
++.-.++..++-++|......+|+.- ..+.+....+.| -+|...+.++-..|+....
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 34445677899999998888788753 234444332233 3899999999999998754
No 290
>PF14893 PNMA: PNMA
Probab=25.38 E-value=73 Score=28.17 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=32.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEE---ecCCCCCcccEEEEEeCCH
Q 021950 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV---IDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~---~~~~~~~~~g~afV~f~~~ 226 (305)
..+.|.|.+||.++++++|.+.+....-.+-..++. ..++.+ ..-|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccc
Confidence 357799999999999999998876322222222222 111112 34577777654
No 291
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.31 E-value=1.5e+02 Score=20.36 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=30.1
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCC
Q 021950 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATN 253 (305)
Q Consensus 200 ~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i--~g~~i~v~~~~~ 253 (305)
.|.+++|..-...|+-+++|-|+|.+ ++ .+++..+ +...+.|++-+.
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~f-~I~~ikVieg~~GlFVaMPs~ 50 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------CF-VIHDIKVIEGEKGLFVAMPSR 50 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------TE-EEEEEEEEEETTEEEEE--EE
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------EE-EEEeEEEEECCCCcEEECCCc
Confidence 36778888766668889999999988 11 2455553 345577776443
No 292
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.18 E-value=52 Score=18.51 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=10.3
Q ss_pred cccCHHHHhHhhhhcC
Q 021950 91 YWMDETYLNTCFAHTG 106 (305)
Q Consensus 91 ~~~t~~~l~~~f~~~G 106 (305)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998754
No 293
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=3.1e+02 Score=27.70 Aligned_cols=6 Identities=0% Similarity=0.324 Sum_probs=2.5
Q ss_pred HHHHHH
Q 021950 189 MLQETF 194 (305)
Q Consensus 189 ~l~~~f 194 (305)
.|++++
T Consensus 442 ~ik~~l 447 (1007)
T KOG1984|consen 442 AIKSVL 447 (1007)
T ss_pred HHHHHH
Confidence 344444
No 294
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=24.61 E-value=79 Score=23.89 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCC
Q 021950 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~~~~ 256 (305)
..+-..|.+.+....+....+.+..-. .++..++|.+.+++.++++. ....++|..+.++..++...
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccc
Confidence 355566666665333333334443321 56889999999999999873 44557888888887765443
No 295
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.55 E-value=3e+02 Score=20.50 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=44.6
Q ss_pred ceEEEcCCCcC---CCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021950 174 HTIFVGDLAAD---VTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 174 ~~l~v~nlp~~---~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~ 249 (305)
..|.|...... .+-+.+.+.++ .-|. ++++..- .+-..|.|.+.++-.+|.+.|....-++-.|.+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~-~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLD-ANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHH-HCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 34445444222 56678889997 5553 4444432 1247899999999999998887655455566555
Q ss_pred cCC
Q 021950 250 PAT 252 (305)
Q Consensus 250 ~~~ 252 (305)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 543
No 296
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=24.42 E-value=1.7e+02 Score=24.49 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=56.7
Q ss_pred CCHHHHHHHHhhcCCCe--------eEEEEEec--CCCCCcccEEEEEeCCHHH-------HHHHHHHhCCceecc-eee
Q 021950 185 VTDYMLQETFRARYPST--------KGAKVVID--RLTGRTKGYGFVRFGDESE-------QLRAMTEMNGVFCST-RPM 246 (305)
Q Consensus 185 ~~~~~l~~~f~~~~G~i--------~~i~i~~~--~~~~~~~g~afV~f~~~~~-------A~~a~~~l~~~~i~g-~~i 246 (305)
+-+++|.+.+. +.+.| ..+.+..- .+.|.+...-+|.|..... ..+.+..||...-.+ +.+
T Consensus 22 TVq~~le~aL~-~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~~~~~~lN~~Lp~dI~v~ 100 (245)
T cd02568 22 TIEGELERALV-KAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEGLGIGEDLVEKLNSHLPEDIRVF 100 (245)
T ss_pred ChHHHHHHHHH-HcCCcCccccCChhhcceeeecccccchhheeeEEEEEEeccccccccchHHHHHHHHccCCCceEEE
Confidence 55788999998 77765 34455432 2245444444555543221 334455566543222 233
Q ss_pred EEccCCCCCCCCCCCCCCCcceEEeCCcchhhhHHHHhhccceeeEEEEEeeeecc
Q 021950 247 RIGPATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNISTS 302 (305)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 302 (305)
.|......-..+.......-.+.+ ... ...+.+++.+....+.--+.|.|++.+
T Consensus 101 ~~~~v~~~F~aR~~a~~R~Y~Y~i-~~~-~~~d~~~m~~a~~~~~G~HdF~~F~~~ 154 (245)
T cd02568 101 GITRVTKSFNARKACDSRTYEYLL-PTF-ALETLDRFNEILKLYVGTHNFHNFTVR 154 (245)
T ss_pred EEEcCCCCCCcchhhhcceeEEEC-Ccc-cHhHHHHHHHHHHHhhCccccccCccc
Confidence 333332222222111112222222 221 124566666767777778888888865
No 297
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=24.13 E-value=2.9e+02 Score=21.56 Aligned_cols=35 Identities=0% Similarity=0.037 Sum_probs=27.0
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEec
Q 021950 175 TIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~ 209 (305)
..|+-.++.+.+..+|++.++..||. |..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 35777889999999999999867876 666666543
No 298
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.98 E-value=1e+02 Score=27.57 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=46.2
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecC--CCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDR--LTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~--~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i 241 (305)
-..+.|.+||...++++|.+.+. .|-. +....+.... ....-.+.|+|.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46789999999999999999887 5543 2222222111 0112256689999999997777777777664
No 299
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=3.5e+02 Score=20.85 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=40.0
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhc---CCcEEEEEEEeCCC---------CCccc-eEEEEEcCHHHH
Q 021950 81 IRTLWIGDLQYWMDETYLNTCFAHT---GEVVAVKVIRNKQT---------GQIEG-YGFIEFISRAGA 136 (305)
Q Consensus 81 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~~---------~~~~g-~afV~f~~~~~A 136 (305)
..+|++..+...+++++.++..++- +++.++.+-+.+.. ...+. |-+|.|++-...
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 3688888999999999999998765 44666766655432 12233 888999886543
No 300
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.32 E-value=77 Score=17.78 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHhhcCCCee
Q 021950 184 DVTDYMLQETFRARYPSTK 202 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~ 202 (305)
.+++++|++.+. .+|.+.
T Consensus 3 tWs~~~L~~wL~-~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLK-SHGIPV 20 (38)
T ss_pred CCCHHHHHHHHH-HcCCCC
Confidence 578999999998 888653
No 301
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.71 E-value=1.4e+02 Score=20.74 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEec
Q 021950 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~ 209 (305)
-+.-.++.+.+..||++.++..||. |.+|....-
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 4455678899999999999988886 556655433
No 302
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=22.57 E-value=29 Score=34.88 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=0.0
Q ss_pred eEEEEEc
Q 021950 125 YGFIEFI 131 (305)
Q Consensus 125 ~afV~f~ 131 (305)
|-|..|.
T Consensus 388 fYYQVY~ 394 (808)
T PF09770_consen 388 FYYQVYS 394 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444443
No 303
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=22.17 E-value=5.5e+02 Score=22.68 Aligned_cols=119 Identities=15% Similarity=0.223 Sum_probs=64.2
Q ss_pred ceEEEc---CCCcccCHHHHhHh----hhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 82 RTLWIG---DLQYWMDETYLNTC----FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 82 ~~l~V~---nLp~~~t~~~l~~~----f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
.+|-+. |.+++-+-|.++.. ++++|.-.++++.+.- -..+|=+=|.|.-.-. +.+....+...++.
T Consensus 112 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG--~yP~GGGeV~~~i~p~-----~~l~~i~l~~~G~i 184 (326)
T TIGR03399 112 SRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRG--FYPRGGGEVRLRVEPV-----KKLKPLELEERGEL 184 (326)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCC--cCCCCCEEEEEEEccc-----cCCCceeeecCCce
Confidence 455553 45566677777775 4788886677776642 2334445555543211 11222233223333
Q ss_pred eeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHH---HHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeC
Q 021950 155 FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML---QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (305)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l---~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~ 224 (305)
.++. ...+..+++..+-+.++ ++.+. .++.-.++.+... ..+.+.|++++-+.
T Consensus 185 ~~i~---------------g~~~~~~l~~~va~r~~~~a~~~L~-~~~~~~~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 185 LRVS---------------GIAHAANLPAHVAERMAKAAREELR-KLGLDPEIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred EEEE---------------EEEEEccCCHHHHHHHHHHHHHHHH-hhCCCceEEEEec-cCCCCCcEEEEEEE
Confidence 3332 36778899998877544 44455 5554334443332 35677788776554
No 304
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=15 Score=33.20 Aligned_cols=66 Identities=8% Similarity=-0.151 Sum_probs=48.1
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021950 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 82 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 148 (305)
...++..|+...+++++.-+|..||.|.-+...+..+.+..+-.+||+..+ +++..++..+.-+.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~ 69 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTT 69 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhh
Confidence 456778899999999999999999999888877766666677788887655 344455544433333
No 305
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.29 E-value=2.2e+02 Score=20.10 Aligned_cols=49 Identities=16% Similarity=0.391 Sum_probs=28.5
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~ 225 (305)
..-+||+++...+.+.--..+-+ .++.= ++.++.. .++. .||+|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~-~~~~G-~avmv~~-~~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQ-LAEEG-NVVMAWA-TNTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHH-hCCCC-cEEEEEc-CCCC-CCcEEEecCC
Confidence 46799999888887754444433 44432 2223332 1333 4899888765
No 306
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.15 E-value=2.9e+02 Score=19.04 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=29.8
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeC
Q 021950 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~ 224 (305)
..-+||+|+...+.|.-...+.+ ..+.=. +.++... .+ ..||+|-+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~-~~~~G~-a~m~~~~-~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTE-WIGDGS-AVMVWSD-NN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHh-hCCCcc-EEEEEcc-CC-CCCEEEEEeC
Confidence 46799999999988765555554 333332 3333332 22 5789888763
No 307
>PHA01632 hypothetical protein
Probab=21.12 E-value=1e+02 Score=19.10 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.6
Q ss_pred EEEcCCCcCCCHHHHHHHHh
Q 021950 176 IFVGDLAADVTDYMLQETFR 195 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~ 195 (305)
|.|..+|..-|+++|++.+.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 44567899999999999875
No 308
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruA, Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus3p Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae PUS1 catalyzes the formation of psi34 and psi36 in the intron containing tRNAIle, psi35 in the intron containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Psi44 in U2 snRNA and, psi38 and psi39 in tRNAs are highly ph
Probab=21.06 E-value=1.7e+02 Score=24.17 Aligned_cols=115 Identities=11% Similarity=-0.044 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHhhcCCCe---eEEEEEec--CCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-cceeeEEccCCCCCCC
Q 021950 184 DVTDYMLQETFRARYPST---KGAKVVID--RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-STRPMRIGPATNKKTV 257 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i---~~i~i~~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i-~g~~i~v~~~~~~~~~ 257 (305)
.+-+++|.+.++ +.+.+ ..+.+..- .+.|.+.-.-+|.|+....-.+....||...- +-+.+.|......-..
T Consensus 18 ~TVq~~le~aL~-~~~~~~~~~~~~i~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~lN~~Lp~dI~v~~~~~v~~~F~a 96 (224)
T cd00497 18 PTVEGELFKALL-KTGLIESPKPSNYSRAGRTDKGVSALGQVVSLETRSKLKPYPDILNGLLPKDIRVLAWAPVPEDFHA 96 (224)
T ss_pred CCHHHHHHHHHH-HhhCcCCCcceeEEEeccccccccccccEEEEEECCCcHHHHHHHHhhCCCCcEEEEEEEeCCCCCC
Confidence 356788999988 77765 24555432 22454433344555432221133444554331 2234444443333222
Q ss_pred CCCCCCCCcceEEeCCcchhhhHHHHhhccceeeEEEEEeeeecc
Q 021950 258 SGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIIIFFNISTS 302 (305)
Q Consensus 258 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 302 (305)
+.......-.+++... ..+.+++.+....+...+.|-|++.+
T Consensus 97 R~~a~~R~Y~Y~i~~~---~~d~~~m~~a~~~f~G~HDF~~F~~~ 138 (224)
T cd00497 97 RFSCVSRTYRYYFPGG---DLDIEAMREAAKLLLGTHDFRNFCKK 138 (224)
T ss_pred CcccCeEEEEEEECCC---CcCHHHHHHHHHHccCcccHHHhcCC
Confidence 2222222222322222 24466666666777778888888864
No 309
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=80 Score=29.61 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=32.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021950 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 216 ~g~afV~f~~~~~A~~a~~~l~~~~i~g~~i~v~~~~~ 253 (305)
..++++.|++.+.+.+|+..++|....+..+++..+..
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 56899999999999999999999988887777766554
No 310
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.95 E-value=4e+02 Score=20.54 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=37.3
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhc--CCCeeEEEEEecCC---------CCCccc-EEEEEeCCHH
Q 021950 174 HTIFVGDLAADVTDYMLQETFRAR--YPSTKGAKVVIDRL---------TGRTKG-YGFVRFGDES 227 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~--~G~i~~i~i~~~~~---------~~~~~g-~afV~f~~~~ 227 (305)
.+|++.-+...+++++.++..+.. -+++..|.+-+..+ +...+. |-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 689999999999999999998733 35566666654432 112233 7788888754
No 311
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=20.95 E-value=5e+02 Score=21.70 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=6.8
Q ss_pred CCcCCCHHHHHHHH
Q 021950 181 LAADVTDYMLQETF 194 (305)
Q Consensus 181 lp~~~~~~~l~~~f 194 (305)
-+.+++-|+-+..+
T Consensus 318 pdedisleerraql 331 (341)
T KOG2893|consen 318 PDEDISLEERRAQL 331 (341)
T ss_pred CcccccHHHHhhhh
Confidence 34455555544444
No 312
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.89 E-value=61 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCH
Q 021950 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~ 226 (305)
|+|.+.|...||.-. .+-.+|-|+||+|++.
T Consensus 89 edL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccccc--------CCccCCCeeEEehhHH
Confidence 667777765666521 1224588999999874
No 313
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=2.6e+02 Score=19.67 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.0
Q ss_pred CccceEEEEEcCHHHHHHHH
Q 021950 121 QIEGYGFIEFISRAGAERVL 140 (305)
Q Consensus 121 ~~~g~afV~f~~~~~A~~a~ 140 (305)
.......|+|.+.+.|+.+-
T Consensus 51 ~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 51 RPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred CcccEEEEEcCCHHHHHHHh
Confidence 33457899999999988775
No 314
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.22 E-value=2e+02 Score=20.26 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=30.3
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCCC
Q 021950 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (305)
Q Consensus 200 ~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~i--~g~~i~v~~~~~~ 254 (305)
+|++|+|..-...|+-+++|-|+|.+. + ..|+..+ +.+.|.|..-+.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd~------f-vI~~ikVieg~~GlFVaMPs~k 51 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDNE------F-VVHDIRVIEGNNGLFIAMPSKR 51 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECCE------E-EEeeeEEEECCCCeEEECcCcC
Confidence 367777776555678899999999882 1 2344443 3345777664433
No 315
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.21 E-value=6.1e+02 Score=22.41 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=62.1
Q ss_pred ceEEEc---CCCcccCHHHHhHhh----hhcCCcEEEEEEEeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCce
Q 021950 82 RTLWIG---DLQYWMDETYLNTCF----AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 82 ~~l~V~---nLp~~~t~~~l~~~f----~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (305)
.+|-+. |.+.+-+-|.++..| +++|.-.++++.+.- -..+|-+-|.|.-.-. +.+....+...++.
T Consensus 110 ~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG--~yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~i 182 (326)
T cd00874 110 STVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRG--FYPRGGGEVVLTVEPS-----KLLPPLLLEERGEI 182 (326)
T ss_pred EEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCC--cCCCCCEEEEEEEecc-----cCCCcceeecCCCe
Confidence 345543 556666777777754 788876677776542 2334445555533211 01111122112222
Q ss_pred eeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHH---HHhhc-CCCeeEEEEEecCCCCCcccEEEEEeC
Q 021950 155 FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE---TFRAR-YPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (305)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~---~f~~~-~G~i~~i~i~~~~~~~~~~g~afV~f~ 224 (305)
.++. ...+..+++..+.+.++.. .++ + ++ .++.+..+...+.+.|++++-+.
T Consensus 183 ~~ir---------------g~~~~~~l~~~va~r~~~~a~~~L~-~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 183 EKIR---------------GISHAANLPPHVAERQAEAAAALLR-KALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred EEEE---------------EEEEEccCCHHHHHHHHHHHHHHHh-hccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 2221 3567889999888765544 454 4 33 23444444444677788765544
Done!