Query 021951
Match_columns 305
No_of_seqs 259 out of 1171
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 8.9E-48 1.9E-52 366.9 26.8 235 64-304 81-335 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3E-45 6.4E-50 347.0 26.6 243 56-304 35-296 (398)
3 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.3E-41 4.9E-46 312.7 25.6 227 66-302 2-257 (326)
4 PTZ00165 aspartyl protease; Pr 100.0 3.2E-41 7E-46 324.1 25.6 229 53-304 108-355 (482)
5 cd05475 nucellin_like Nucellin 100.0 3.8E-41 8.3E-46 303.8 22.9 193 66-295 1-196 (273)
6 cd05478 pepsin_A Pepsin A, asp 100.0 8.8E-41 1.9E-45 307.6 24.4 215 64-304 7-234 (317)
7 cd05477 gastricsin Gastricsins 100.0 2.5E-40 5.5E-45 304.7 26.1 214 65-304 1-229 (318)
8 cd06097 Aspergillopepsin_like 100.0 2.4E-40 5.3E-45 299.3 23.9 211 68-302 1-224 (278)
9 cd05490 Cathepsin_D2 Cathepsin 100.0 3.6E-40 7.8E-45 304.6 24.3 213 64-304 3-234 (325)
10 cd05488 Proteinase_A_fungi Fun 100.0 4.7E-40 1E-44 303.2 24.4 220 57-304 2-233 (320)
11 cd05486 Cathespin_E Cathepsin 100.0 5.9E-40 1.3E-44 302.0 22.8 209 68-304 1-226 (316)
12 cd05472 cnd41_like Chloroplast 100.0 6.4E-40 1.4E-44 299.5 21.8 188 67-304 1-199 (299)
13 cd05485 Cathepsin_D_like Cathe 100.0 2.6E-39 5.7E-44 299.3 24.2 214 63-304 7-238 (329)
14 cd06098 phytepsin Phytepsin, a 100.0 8.7E-39 1.9E-43 294.4 24.2 209 63-299 6-233 (317)
15 cd05487 renin_like Renin stimu 100.0 2.2E-38 4.8E-43 292.8 24.1 215 63-304 4-235 (326)
16 PTZ00147 plasmepsin-1; Provisi 100.0 3.2E-38 6.9E-43 301.3 24.9 220 52-303 126-359 (453)
17 cd05471 pepsin_like Pepsin-lik 100.0 7.7E-38 1.7E-42 282.1 25.5 213 68-304 1-230 (283)
18 cd05489 xylanase_inhibitor_I_l 100.0 2.5E-38 5.4E-43 295.7 22.5 219 74-304 2-257 (362)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.6E-37 1.2E-41 292.3 26.0 219 53-303 126-358 (450)
20 cd05473 beta_secretase_like Be 100.0 4.3E-37 9.2E-42 288.3 24.8 210 67-304 3-239 (364)
21 cd05476 pepsin_A_like_plant Ch 100.0 5E-36 1.1E-40 269.3 20.5 176 67-295 1-195 (265)
22 cd05474 SAP_like SAPs, pepsin- 100.0 3.5E-34 7.7E-39 260.7 21.4 181 67-304 2-206 (295)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.2E-34 7E-39 262.9 15.2 212 67-304 1-227 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.8E-31 6E-36 221.8 15.6 156 68-237 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 4E-23 8.7E-28 160.7 13.1 107 70-200 1-109 (109)
26 cd05483 retropepsin_like_bacte 98.2 8.7E-06 1.9E-10 60.8 7.4 93 67-202 2-94 (96)
27 PF14541 TAXi_C: Xylanase inhi 97.2 0.00027 5.8E-09 58.6 3.1 30 275-304 28-57 (161)
28 TIGR02281 clan_AA_DTGA clan AA 96.9 0.01 2.2E-07 46.8 9.5 102 56-202 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.0 0.076 1.6E-06 38.6 8.9 89 70-201 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.0 0.27 5.8E-06 38.8 9.4 31 65-97 14-44 (124)
31 cd05484 retropepsin_like_LTR_2 91.8 0.22 4.8E-06 36.8 3.6 28 68-97 1-28 (91)
32 TIGR02281 clan_AA_DTGA clan AA 90.3 0.82 1.8E-05 35.9 5.7 35 256-298 10-44 (121)
33 PF13650 Asp_protease_2: Aspar 89.0 0.72 1.6E-05 33.3 4.3 30 264-298 2-31 (90)
34 PF13975 gag-asp_proteas: gag- 89.0 0.86 1.9E-05 32.2 4.4 31 65-97 6-36 (72)
35 cd05484 retropepsin_like_LTR_2 87.1 1.1 2.5E-05 32.9 4.3 31 264-299 4-34 (91)
36 PF13975 gag-asp_proteas: gag- 84.8 2 4.3E-05 30.3 4.4 30 264-298 12-41 (72)
37 COG3577 Predicted aspartyl pro 82.4 7.3 0.00016 33.5 7.4 84 55-177 95-178 (215)
38 cd06095 RP_RTVL_H_like Retrope 82.3 2.1 4.7E-05 31.2 3.9 29 265-298 3-31 (86)
39 PF00077 RVP: Retroviral aspar 81.5 2.7 5.8E-05 31.3 4.2 27 69-97 7-33 (100)
40 cd05483 retropepsin_like_bacte 81.2 3.4 7.3E-05 30.0 4.7 30 264-298 6-35 (96)
41 cd05479 RP_DDI RP_DDI; retrope 76.6 4.5 9.7E-05 31.7 4.3 30 264-298 20-49 (124)
42 cd05482 HIV_retropepsin_like R 76.0 4.2 9.1E-05 30.0 3.7 25 71-97 2-26 (87)
43 PF00077 RVP: Retroviral aspar 75.4 3.9 8.5E-05 30.3 3.6 29 263-296 8-36 (100)
44 cd06095 RP_RTVL_H_like Retrope 72.8 5.2 0.00011 29.1 3.5 25 71-97 2-26 (86)
45 cd05481 retropepsin_like_LTR_1 66.0 7.5 0.00016 28.9 3.2 30 265-299 3-33 (93)
46 TIGR03698 clan_AA_DTGF clan AA 65.8 5 0.00011 30.7 2.2 22 277-298 17-39 (107)
47 COG5550 Predicted aspartyl pro 63.6 5.4 0.00012 31.3 2.0 20 279-298 29-49 (125)
48 PF09668 Asp_protease: Asparty 62.0 14 0.00029 29.3 4.1 30 264-298 28-57 (124)
49 PF12384 Peptidase_A2B: Ty3 tr 61.0 12 0.00026 31.0 3.7 29 69-97 34-62 (177)
50 PF11925 DUF3443: Protein of u 60.5 77 0.0017 29.8 9.3 131 146-292 82-271 (370)
51 COG3577 Predicted aspartyl pro 51.4 25 0.00055 30.2 4.2 42 249-298 97-138 (215)
52 PF09668 Asp_protease: Asparty 38.4 63 0.0014 25.5 4.4 31 65-97 22-52 (124)
53 TIGR03698 clan_AA_DTGF clan AA 38.2 46 0.00099 25.3 3.6 26 70-95 2-32 (107)
54 PF08284 RVP_2: Retroviral asp 33.7 1.2E+02 0.0026 24.1 5.4 21 278-298 34-54 (135)
55 PF08284 RVP_2: Retroviral asp 30.4 82 0.0018 25.1 4.0 29 67-97 21-49 (135)
56 cd05472 cnd41_like Chloroplast 30.0 41 0.00089 30.3 2.5 44 54-97 134-188 (299)
57 cd06098 phytepsin Phytepsin, a 27.9 67 0.0014 29.3 3.5 32 66-97 188-227 (317)
58 PF12384 Peptidase_A2B: Ty3 tr 26.1 1.8E+02 0.004 24.2 5.3 23 277-299 46-68 (177)
59 cd05475 nucellin_like Nucellin 25.9 77 0.0017 28.1 3.5 32 66-97 157-194 (273)
60 cd00303 retropepsin_like Retro 25.1 56 0.0012 21.8 2.0 21 278-298 11-31 (92)
61 cd05471 pepsin_like Pepsin-lik 24.9 72 0.0016 27.9 3.1 42 54-97 170-219 (283)
62 PF15409 PH_8: Pleckstrin homo 24.0 2.2E+02 0.0048 21.0 5.0 29 276-304 56-87 (89)
63 PF13752 DUF4165: Domain of un 22.5 1.5E+02 0.0032 23.4 3.9 47 235-284 76-122 (124)
64 PF05585 DUF1758: Putative pep 20.4 53 0.0012 26.8 1.2 20 78-97 10-29 (164)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=8.9e-48 Score=366.86 Aligned_cols=235 Identities=32% Similarity=0.558 Sum_probs=198.2
Q ss_pred CCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCcccccCcCCCCCCCCCCC
Q 021951 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP 139 (305)
Q Consensus 64 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S----~v~c~s~~C~~~~~~~~~~c~~~ 139 (305)
.+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++| .++|+++.|..++. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 3679999999999999999999999999999999 999999888999999998 59999999987653 2357666
Q ss_pred CCceeEeeeCCCCeEEEEEEEEEEEEeecCCC-cCCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccc
Q 021951 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (305)
Q Consensus 140 ~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~ 218 (305)
+.|.|.+.|+||+.+.|.+++|+|+|++..+. ..++++.|||++.+...+ ....+||||||++.+|+++||... +.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~Sl~sql~~~--~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPLSLISQLGSS--IG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCccHHHHhhHh--hC
Confidence 67999999999988899999999999753221 457899999998763323 235899999999999999999764 55
Q ss_pred eeeEEeecC-----CCcceEEECCCCCCC-CCcEEEEcccCCC-cceeeEeeEEEECCEEeeeCC--------CCEEEec
Q 021951 219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSDYT-KYYSPGVAELFFGGETTGLKN--------LPVVFDS 283 (305)
Q Consensus 219 ~~Fs~~L~~-----~~~G~l~fG~~~~~~-g~~~~~pl~~~~~-~~y~v~l~~i~v~~~~~~~~~--------~~~iiDS 283 (305)
++|||||.+ ...|.|+||+..+.. ..+.|+||+.+.. .+|.|.+++|+||++.+.++. +.+||||
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS 314 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS 314 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence 699999963 247999999865543 4589999986432 799999999999999876533 5799999
Q ss_pred cccceeecHHHHHHHHHHHhc
Q 021951 284 GSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 284 GTs~~~lp~~~~~~l~~~~~~ 304 (305)
||++++||+++|++|.++|.+
T Consensus 315 GTt~t~Lp~~~y~~l~~~~~~ 335 (431)
T PLN03146 315 GTTLTLLPSDFYSELESAVEE 335 (431)
T ss_pred CccceecCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-45 Score=347.03 Aligned_cols=243 Identities=34% Similarity=0.627 Sum_probs=205.2
Q ss_pred EEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCC-CCCCCCCCCCCCCCC----CCCCCcccccCcCC
Q 021951 56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV-RCVEAPHPLYRPSND----LVPCEDPICASLHA 130 (305)
Q Consensus 56 ~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~-~C~~~~~~~y~p~~S----~v~c~s~~C~~~~~ 130 (305)
++...+.+.+++|+++|.||||||.|.|+|||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|.....
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc
Confidence 333344456889999999999999999999999999999999 999 798765566999998 69999999998764
Q ss_pred CCCCCCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCC-CCcceEEecCCCCChHHH
Q 021951 131 PGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASY-HPLDGILGLGKGKSSIVS 209 (305)
Q Consensus 131 ~~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ 209 (305)
.|..++.|.|.+.|+||+.++|.+++|+|+|++.+ ...++++.|||+..+...+.. .+.+||||||+..++++.
T Consensus 114 ----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 114 ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred ----CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccccccceEeecCCCCcccee
Confidence 37777999999999998799999999999996432 256678999999887432122 578999999999999999
Q ss_pred HhhhccccceeeEEeecCC-----CcceEEECCCCC--CCCCcEEEEcccCCCcceeeEeeEEEECCEE-----e-eeCC
Q 021951 210 QLHSQKLIRNVVGHCLSGG-----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGET-----T-GLKN 276 (305)
Q Consensus 210 ql~~~~~i~~~Fs~~L~~~-----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~-----~-~~~~ 276 (305)
|+.......++||+||.+. .+|.|+||+.+. ..+.+.|+||+.+...+|+|.+++|+|+++. . ..+.
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~ 268 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDG 268 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCC
Confidence 9999876677999999964 379999997754 5678999999998534999999999999743 2 2224
Q ss_pred CCEEEeccccceeecHHHHHHHHHHHhc
Q 021951 277 LPVVFDSGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 304 (305)
+++||||||++++||+++|++|.++|.+
T Consensus 269 ~~~iiDSGTs~t~lp~~~y~~i~~~~~~ 296 (398)
T KOG1339|consen 269 GGAIIDSGTSLTYLPTSAYNALREAIGA 296 (398)
T ss_pred CCEEEECCcceeeccHHHHHHHHHHHHh
Confidence 8999999999999999999999999986
No 3
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.3e-41 Score=312.72 Aligned_cols=227 Identities=26% Similarity=0.479 Sum_probs=183.8
Q ss_pred eeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCcccccCcCCCCCCCCCCCCC
Q 021951 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQ 141 (305)
Q Consensus 66 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S----~v~c~s~~C~~~~~~~~~~c~~~~~ 141 (305)
++|+++|.||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++| .++|++..|.. ...|.. +.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~~-~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCLN-NK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCCC-Cc
Confidence 47999999999999999999999999999999 999999887899999988 48999999843 234543 67
Q ss_pred ceeEeeeCCCCeEEEEEEEEEEEEeecCCC---cCCCceEEEeeeecCCCCCCCCcceEEecCCCCCh----HHHHhhhc
Q 021951 142 CDYELEYADGGSSLGVLVKDAFAFNYTNGQ---RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSS----IVSQLHSQ 214 (305)
Q Consensus 142 ~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~ql~~~ 214 (305)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+......+.....+||||||+...+ ...+|.++
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 999999999988999999999999642110 11235789999876444445678999999998642 22234455
Q ss_pred ccc---ceeeEEeecCCCcceEEECCCCC--CC----------CCcEEEEcccCCCcceeeEeeEEEECCEE---eeeCC
Q 021951 215 KLI---RNVVGHCLSGGGGGFLFFGDDLY--DS----------SRVVWTSMSSDYTKYYSPGVAELFFGGET---TGLKN 276 (305)
Q Consensus 215 ~~i---~~~Fs~~L~~~~~G~l~fG~~~~--~~----------g~~~~~pl~~~~~~~y~v~l~~i~v~~~~---~~~~~ 276 (305)
+.+ +++||+||.+. .|.|+||+.++ +. +++.|+|+... .+|.|.+++|+|+++. .....
T Consensus 155 ~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 155 RPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred cccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEEEcccccceecccC
Confidence 444 38999999864 79999998653 33 78999999876 5999999999999885 22346
Q ss_pred CCEEEeccccceeecHHHHHHHHHHH
Q 021951 277 LPVVFDSGSSYTYLNRVTYQTLTSIV 302 (305)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~~ 302 (305)
..+||||||++++||+++|++|.+++
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 88999999999999999999998875
No 4
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3.2e-41 Score=324.11 Aligned_cols=229 Identities=21% Similarity=0.385 Sum_probs=186.5
Q ss_pred ceeEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCC
Q 021951 53 SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPG 132 (305)
Q Consensus 53 ~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~ 132 (305)
....||.+ |.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|....++.|||++|+ ++....
T Consensus 108 ~~~~~l~n--~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS------Ty~~~~--- 175 (482)
T PTZ00165 108 YLQQDLLN--FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS------TYTKLK--- 175 (482)
T ss_pred ccceeccc--ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC------CcEecC---
Confidence 34566654 56899999999999999999999999999999999 8986554567899999884 121110
Q ss_pred CCCCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCC------
Q 021951 133 HHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS------ 205 (305)
Q Consensus 133 ~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~------ 205 (305)
.......+.+.|++| ++.|.+++|+|+| |+..++++.|||++..... +...+.|||||||++.+
T Consensus 176 ----~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 176 ----LGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred ----CCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEeccccccccccccceeecCCCcccccccC
Confidence 000122577999999 6889999999999 4678899999999876332 55567899999998753
Q ss_pred ---hHHHHhhhcccc-ceeeEEeecC--CCcceEEECCCCC--C--CCCcEEEEcccCCCcceeeEeeEEEECCEEeee-
Q 021951 206 ---SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--D--SSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL- 274 (305)
Q Consensus 206 ---s~~~ql~~~~~i-~~~Fs~~L~~--~~~G~l~fG~~~~--~--~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~- 274 (305)
+++.+|.+||++ +++||+||.+ ..+|+|+||+.+. + .+++.|+|+... .||+|.+++|+++++.+..
T Consensus 247 ~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~--~yW~i~l~~i~vgg~~~~~~ 324 (482)
T PTZ00165 247 KALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST--DYWEIEVVDILIDGKSLGFC 324 (482)
T ss_pred CCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc--ceEEEEeCeEEECCEEeeec
Confidence 477889999999 8999999974 3479999998753 3 568999999876 5999999999999987654
Q ss_pred -CCCCEEEeccccceeecHHHHHHHHHHHhc
Q 021951 275 -KNLPVVFDSGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 275 -~~~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 304 (305)
..+.+|+||||+++++|+++|++|.++++.
T Consensus 325 ~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~ 355 (482)
T PTZ00165 325 DRKCKAAIDTGSSLITGPSSVINPLLEKIPL 355 (482)
T ss_pred CCceEEEEcCCCccEeCCHHHHHHHHHHcCC
Confidence 457899999999999999999999998864
No 5
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.8e-41 Score=303.84 Aligned_cols=193 Identities=66% Similarity=1.177 Sum_probs=166.3
Q ss_pred eeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeE
Q 021951 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (305)
Q Consensus 66 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (305)
++|+++|.||||||++.|+|||||+++||+|..+|..| .|.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 47999999999999999999999999999984245443 25899
Q ss_pred eeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC--CCCCCcceEEecCCCCChHHHHhhhccccceeeEE
Q 021951 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG--ASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGH 223 (305)
Q Consensus 146 ~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 223 (305)
+.|+||+.++|.+++|+|+|+..++...++++.|||+..+... ......+||||||++.+++++||.++++++++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 9999888999999999999986666667789999999765332 13356899999999999999999999888999999
Q ss_pred eecCCCcceEEECCCCCCCCCcEEEEcccCCC-cceeeEeeEEEECCEEeeeCCCCEEEeccccceeecHHHH
Q 021951 224 CLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT-KYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTY 295 (305)
Q Consensus 224 ~L~~~~~G~l~fG~~~~~~g~~~~~pl~~~~~-~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~ 295 (305)
||.+..+|.|+||+..++.+++.|+|+..++. .+|.|.+.+|+||++.+......+||||||++++||+++|
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y 196 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY 196 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc
Confidence 99986679999998766778999999988632 6999999999999987655567899999999999999876
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.8e-41 Score=307.63 Aligned_cols=215 Identities=21% Similarity=0.354 Sum_probs=181.5
Q ss_pred CCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCce
Q 021951 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCD 143 (305)
Q Consensus 64 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~ 143 (305)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++|+ +++. ..|.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss------t~~~------------~~~~ 67 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS------TYQS------------TGQP 67 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc------ceee------------CCcE
Confidence 3889999999999999999999999999999999 9986555567899998873 1111 2568
Q ss_pred eEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCC-CCCCcceEEecCCCCC------hHHHHhhhccc
Q 021951 144 YELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKS------SIVSQLHSQKL 216 (305)
Q Consensus 144 ~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGLg~~~~------s~~~ql~~~~~ 216 (305)
|.+.|++| ++.|.+++|+|+|+ +..+.++.|||+......+ .....+||||||++.+ +++.+|+++++
T Consensus 68 ~~~~yg~g-s~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~ 142 (317)
T cd05478 68 LSIQYGTG-SMTGILGYDTVQVG----GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGL 142 (317)
T ss_pred EEEEECCc-eEEEEEeeeEEEEC----CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCC
Confidence 99999999 48999999999994 5678899999997653222 2345899999998754 48899999999
Q ss_pred c-ceeeEEeecCC--CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeC-CCCEEEeccccceee
Q 021951 217 I-RNVVGHCLSGG--GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSSYTYL 290 (305)
Q Consensus 217 i-~~~Fs~~L~~~--~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~iiDSGTs~~~l 290 (305)
| +++||+||.+. .+|+|+||+.+ ++.+++.|+|+... .+|.|.+++|+|+++.+... +..+||||||++++|
T Consensus 143 i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~--~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~l 220 (317)
T cd05478 143 VSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE--TYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVG 220 (317)
T ss_pred CCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC--cEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhC
Confidence 9 79999999864 36999999764 46799999999865 59999999999999988653 468999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 021951 291 NRVTYQTLTSIVKR 304 (305)
Q Consensus 291 p~~~~~~l~~~~~~ 304 (305)
|+++|++|.++++.
T Consensus 221 p~~~~~~l~~~~~~ 234 (317)
T cd05478 221 PSSDIANIQSDIGA 234 (317)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999998864
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.5e-40 Score=304.67 Aligned_cols=214 Identities=23% Similarity=0.420 Sum_probs=179.6
Q ss_pred CeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCcee
Q 021951 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDY 144 (305)
Q Consensus 65 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~ 144 (305)
|..|+++|.||||||++.|+|||||+++||+|. .|..|....++.|+|++|+ +|.. ..|.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss------T~~~------------~~~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS------TYST------------NGETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC------CceE------------CCcEE
Confidence 358999999999999999999999999999999 8985333356899999884 1111 46799
Q ss_pred EeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCC------CChHHHHhhhcccc
Q 021951 145 ELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG------KSSIVSQLHSQKLI 217 (305)
Q Consensus 145 ~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~------~~s~~~ql~~~~~i 217 (305)
.+.|++| ++.|.+++|+|+| |+..++++.|||+...... +.....+||||||++ ..+++.||.+++.|
T Consensus 62 ~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 62 SLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred EEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 9999999 5899999999999 4567889999999875322 333567999999985 35689999999999
Q ss_pred -ceeeEEeecCC---CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeee--CCCCEEEecccccee
Q 021951 218 -RNVVGHCLSGG---GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDSGSSYTY 289 (305)
Q Consensus 218 -~~~Fs~~L~~~---~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~--~~~~~iiDSGTs~~~ 289 (305)
+++||+||.+. .+|.|+||+.+ ++.+++.|+|+... .+|.|.+++|+|+++.+.. .+..+||||||++++
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~ 214 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE--TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLT 214 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc--eEEEEEeeEEEECCEEecccCCCceeeECCCCccEE
Confidence 89999999853 46999999765 46789999999875 5999999999999987653 246799999999999
Q ss_pred ecHHHHHHHHHHHhc
Q 021951 290 LNRVTYQTLTSIVKR 304 (305)
Q Consensus 290 lp~~~~~~l~~~~~~ 304 (305)
||+++|++|.+++++
T Consensus 215 lP~~~~~~l~~~~~~ 229 (318)
T cd05477 215 APQQVMSTLMQSIGA 229 (318)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999998865
No 8
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.4e-40 Score=299.27 Aligned_cols=211 Identities=22% Similarity=0.321 Sum_probs=177.9
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEee
Q 021951 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELE 147 (305)
Q Consensus 68 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~~ 147 (305)
|+++|+||||+|++.|+|||||+++||+|. .|..|....++.|+|++|. +|.. ...|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss------t~~~-----------~~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS------TAKL-----------LPGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc------ccee-----------cCCcEEEEE
Confidence 789999999999999999999999999999 9999987778889998873 1111 135799999
Q ss_pred eCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCC---------hHHHHhhhcccc
Q 021951 148 YADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS---------SIVSQLHSQKLI 217 (305)
Q Consensus 148 Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~---------s~~~ql~~~~~i 217 (305)
|++|+.+.|.+++|+|+|+ +..++++.|||++..... +.....+||||||++.. +++.+|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIG----GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 9999889999999999994 567889999999876432 34467999999998754 35667777754
Q ss_pred ceeeEEeecCCCcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEE-eeeCCCCEEEeccccceeecHHH
Q 021951 218 RNVVGHCLSGGGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGET-TGLKNLPVVFDSGSSYTYLNRVT 294 (305)
Q Consensus 218 ~~~Fs~~L~~~~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~-~~~~~~~~iiDSGTs~~~lp~~~ 294 (305)
+++||+||.+...|+|+||+.+ ++.+++.|+|+.... .+|.|.+++|+|+++. ....+..+||||||+++++|+++
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~-~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSS-GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCC-cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 7899999997678999999875 468999999998744 6999999999999873 33356889999999999999999
Q ss_pred HHHHHHHH
Q 021951 295 YQTLTSIV 302 (305)
Q Consensus 295 ~~~l~~~~ 302 (305)
+++|.+++
T Consensus 217 ~~~l~~~l 224 (278)
T cd06097 217 VEAYYSQV 224 (278)
T ss_pred HHHHHHhC
Confidence 99999988
No 9
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.6e-40 Score=304.55 Aligned_cols=213 Identities=21% Similarity=0.334 Sum_probs=177.2
Q ss_pred CCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCC----CCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCC
Q 021951 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (305)
Q Consensus 64 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~----~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~ 139 (305)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ ++..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~Ss------T~~~------------ 61 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSS------TYVK------------ 61 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCc------ceee------------
Confidence 4789999999999999999999999999999998 897 455 46789998873 1111
Q ss_pred CCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCC------hHHHHhh
Q 021951 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS------SIVSQLH 212 (305)
Q Consensus 140 ~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~------s~~~ql~ 212 (305)
..|.|.+.|++| .+.|.+++|+|+|+ +..+.++.|||++..... +.....+||||||++.. +++++|.
T Consensus 62 ~~~~~~i~Yg~G-~~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 62 NGTEFAIQYGSG-SLSGYLSQDTVSIG----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred CCcEEEEEECCc-EEEEEEeeeEEEEC----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 257999999999 68999999999994 567889999999876332 33456899999998754 4667999
Q ss_pred hcccc-ceeeEEeecCC----CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeee-CCCCEEEecc
Q 021951 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL-KNLPVVFDSG 284 (305)
Q Consensus 213 ~~~~i-~~~Fs~~L~~~----~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~-~~~~~iiDSG 284 (305)
+++.+ +++||+||.++ .+|+|+||+.+ ++.+++.|+|+... .+|.|.+++|+|++..... ....+|||||
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 214 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK--AYWQIHMDQVDVGSGLTLCKGGCEAIVDTG 214 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc--eEEEEEeeEEEECCeeeecCCCCEEEECCC
Confidence 99998 89999999842 36999999764 46789999999765 5999999999999875432 3468999999
Q ss_pred ccceeecHHHHHHHHHHHhc
Q 021951 285 SSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 285 Ts~~~lp~~~~~~l~~~~~~ 304 (305)
|+++++|++++++|.+++.+
T Consensus 215 Tt~~~~p~~~~~~l~~~~~~ 234 (325)
T cd05490 215 TSLITGPVEEVRALQKAIGA 234 (325)
T ss_pred CccccCCHHHHHHHHHHhCC
Confidence 99999999999999998853
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.7e-40 Score=303.21 Aligned_cols=220 Identities=20% Similarity=0.342 Sum_probs=182.2
Q ss_pred EEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCC
Q 021951 57 QVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNC 136 (305)
Q Consensus 57 pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c 136 (305)
||.+ +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+....++.|+|++|.. |..
T Consensus 2 ~l~n--~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Sst------~~~--------- 63 (320)
T cd05488 2 PLTN--YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASST------YKA--------- 63 (320)
T ss_pred cccc--cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCcc------eee---------
Confidence 4543 34779999999999999999999999999999999 89743323557899988731 111
Q ss_pred CCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCChH------HH
Q 021951 137 EDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSI------VS 209 (305)
Q Consensus 137 ~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s~------~~ 209 (305)
..|.|.+.|++| +++|.+++|+|+|+ +..++++.|||++..... +.....+||||||++..+. ..
T Consensus 64 ---~~~~~~~~y~~g-~~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (320)
T cd05488 64 ---NGTEFKIQYGSG-SLEGFVSQDTLSIG----DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFY 135 (320)
T ss_pred ---CCCEEEEEECCc-eEEEEEEEeEEEEC----CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHH
Confidence 367999999999 58999999999994 567789999999765322 2334679999999986543 44
Q ss_pred Hhhhcccc-ceeeEEeecCC--CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeCCCCEEEecc
Q 021951 210 QLHSQKLI-RNVVGHCLSGG--GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSG 284 (305)
Q Consensus 210 ql~~~~~i-~~~Fs~~L~~~--~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSG 284 (305)
+|.+++.| +++||+||.+. .+|.|+||+.+ ++.+++.|+|++.. .+|.|.+++|+||++.+...+..++||||
T Consensus 136 ~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~w~v~l~~i~vg~~~~~~~~~~~ivDSG 213 (320)
T cd05488 136 NMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK--AYWEVELEKIGLGDEELELENTGAAIDTG 213 (320)
T ss_pred HHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC--cEEEEEeCeEEECCEEeccCCCeEEEcCC
Confidence 78899999 89999999853 57999999875 46789999999865 59999999999999988777789999999
Q ss_pred ccceeecHHHHHHHHHHHhc
Q 021951 285 SSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 285 Ts~~~lp~~~~~~l~~~~~~ 304 (305)
|++++||++++++|.+++++
T Consensus 214 tt~~~lp~~~~~~l~~~~~~ 233 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGA 233 (320)
T ss_pred cccccCCHHHHHHHHHHhCC
Confidence 99999999999999998864
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.9e-40 Score=302.04 Aligned_cols=209 Identities=21% Similarity=0.341 Sum_probs=176.0
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeE
Q 021951 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (305)
Q Consensus 68 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~--~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (305)
|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|. +|.. ..|.|.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~Ss------T~~~------------~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESS------TYVS------------NGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCc------cccc------------CCcEEE
Confidence 799999999999999999999999999999 897 465 56889998883 1211 367999
Q ss_pred eeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCCh------HHHHhhhcccc-
Q 021951 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLHSQKLI- 217 (305)
Q Consensus 146 ~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i- 217 (305)
+.|++| .+.|.+++|+|+|+ +..+.++.|||+...... +.....+||||||++.++ ++.+|.+++++
T Consensus 60 i~Yg~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTVE----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEeCCc-EEEEEeeecEEEEC----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 999999 68999999999994 567889999998765322 334578999999987654 57889999998
Q ss_pred ceeeEEeecCC----CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeC-CCCEEEeccccceee
Q 021951 218 RNVVGHCLSGG----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSSYTYL 290 (305)
Q Consensus 218 ~~~Fs~~L~~~----~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~iiDSGTs~~~l 290 (305)
+++||+||.++ ..|+|+||+.+ ++.+++.|+|+... .+|.|.+++|+|+++.+... ...+||||||+++++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~--~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~l 212 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ--GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITG 212 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc--eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhc
Confidence 78999999853 47999999764 46799999999875 69999999999999876543 468999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 021951 291 NRVTYQTLTSIVKR 304 (305)
Q Consensus 291 p~~~~~~l~~~~~~ 304 (305)
|++++++|.+++.+
T Consensus 213 P~~~~~~l~~~~~~ 226 (316)
T cd05486 213 PSGDIKQLQNYIGA 226 (316)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988753
No 12
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.4e-40 Score=299.46 Aligned_cols=188 Identities=35% Similarity=0.602 Sum_probs=163.6
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEe
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~ 146 (305)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 5999999999999999999999999999887 44 37889
Q ss_pred eeCCCCeEEEEEEEEEEEEeecCCCc-CCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccceeeEEee
Q 021951 147 EYADGGSSLGVLVKDAFAFNYTNGQR-LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCL 225 (305)
Q Consensus 147 ~Y~~Gs~~~G~~~~D~v~l~~~~g~~-~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L 225 (305)
.|++|+.++|.+++|+|+|+ +. .++++.|||+...+..+ ...+||||||+..++++.|+..+ .+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~~~~--~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNEGLF--GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCCCcc--CCCCEEEECCCCcchHHHHhhHh--hcCceEEEc
Confidence 99999878999999999995 44 67899999998764322 36899999999999999998765 468999999
Q ss_pred cC---CCcceEEECCCCCCCCCcEEEEcccCCC--cceeeEeeEEEECCEEeeeC-----CCCEEEeccccceeecHHHH
Q 021951 226 SG---GGGGFLFFGDDLYDSSRVVWTSMSSDYT--KYYSPGVAELFFGGETTGLK-----NLPVVFDSGSSYTYLNRVTY 295 (305)
Q Consensus 226 ~~---~~~G~l~fG~~~~~~g~~~~~pl~~~~~--~~y~v~l~~i~v~~~~~~~~-----~~~~iiDSGTs~~~lp~~~~ 295 (305)
.+ ..+|+|+||+.++..+++.|+|++.++. .+|.|.+++|+|+++.+... ...+||||||++++||+++|
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 85 4589999998876688999999987642 69999999999999987652 46899999999999999999
Q ss_pred HHHHHHHhc
Q 021951 296 QTLTSIVKR 304 (305)
Q Consensus 296 ~~l~~~~~~ 304 (305)
++|.+++.+
T Consensus 191 ~~l~~~l~~ 199 (299)
T cd05472 191 AALRDAFRA 199 (299)
T ss_pred HHHHHHHHH
Confidence 999999874
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.6e-39 Score=299.32 Aligned_cols=214 Identities=20% Similarity=0.323 Sum_probs=179.9
Q ss_pred cCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCC----CCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCC
Q 021951 63 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCED 138 (305)
Q Consensus 63 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~----~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~ 138 (305)
+.+.+|+++|.||||+|++.|++||||+++||+|. .|. .|. .++.|+|++|. +|..
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss------t~~~----------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS------TYKK----------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC------CeEE-----------
Confidence 35889999999999999999999999999999998 897 454 45789998883 1221
Q ss_pred CCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCCh------HHHHh
Q 021951 139 PAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQL 211 (305)
Q Consensus 139 ~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql 211 (305)
..|.|.+.|++| .+.|.+++|+|+|+ +..++++.|||+.+.... +.....+||||||++..+ ++.||
T Consensus 67 -~~~~~~i~Y~~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 140 (329)
T cd05485 67 -NGTEFAIQYGSG-SLSGFLSTDTVSVG----GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNM 140 (329)
T ss_pred -CCeEEEEEECCc-eEEEEEecCcEEEC----CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHH
Confidence 357999999999 58999999999994 567789999999765322 334568999999998654 56799
Q ss_pred hhcccc-ceeeEEeecCC----CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeCCCCEEEecc
Q 021951 212 HSQKLI-RNVVGHCLSGG----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSG 284 (305)
Q Consensus 212 ~~~~~i-~~~Fs~~L~~~----~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSG 284 (305)
.++++| +++||+||.+. ..|+|+||+.+ ++.+++.|+|+... .+|.|.+++|+++++.+...+..+|||||
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~~~v~~~~i~v~~~~~~~~~~~~iiDSG 218 (329)
T cd05485 141 VNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK--GYWQFKMDSVSVGEGEFCSGGCQAIADTG 218 (329)
T ss_pred HhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc--eEEEEEeeEEEECCeeecCCCcEEEEccC
Confidence 999999 89999999852 46999999875 45789999999865 69999999999999887655678999999
Q ss_pred ccceeecHHHHHHHHHHHhc
Q 021951 285 SSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 285 Ts~~~lp~~~~~~l~~~~~~ 304 (305)
|++++||+++|++|.+++..
T Consensus 219 tt~~~lP~~~~~~l~~~~~~ 238 (329)
T cd05485 219 TSLIAGPVDEIEKLNNAIGA 238 (329)
T ss_pred CcceeCCHHHHHHHHHHhCC
Confidence 99999999999999998864
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.7e-39 Score=294.39 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=173.8
Q ss_pred cCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCC---CCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCC
Q 021951 63 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV---RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (305)
Q Consensus 63 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~---~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~ 139 (305)
+.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~Ss------T~~~------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSS------TYKK------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCC------Cccc------------
Confidence 35889999999999999999999999999999999 896 687 45789999883 1211
Q ss_pred CCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCCCh------HHHHhh
Q 021951 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLH 212 (305)
Q Consensus 140 ~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~ 212 (305)
..+.+.+.|++| .+.|.+++|+|+|+ +..++++.|||++..... +.....+||||||++..+ ++.+|.
T Consensus 65 ~~~~~~i~Yg~G-~~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 65 NGTSASIQYGTG-SISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred CCCEEEEEcCCc-eEEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 245789999999 68999999999994 567889999999875332 444578999999997544 566899
Q ss_pred hcccc-ceeeEEeecCC----CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeee--CCCCEEEec
Q 021951 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDS 283 (305)
Q Consensus 213 ~~~~i-~~~Fs~~L~~~----~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~--~~~~~iiDS 283 (305)
+++++ +++||+||.+. ..|.|+||+.+ ++.+++.|+|+... .+|.|.+++|+|+++.+.. ....+||||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~aivDT 217 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK--GYWQFEMGDVLIGGKSTGFCAGGCAAIADS 217 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC--cEEEEEeCeEEECCEEeeecCCCcEEEEec
Confidence 99988 78999999742 47999999764 46799999999865 5999999999999988654 236799999
Q ss_pred cccceeecHHHHHHHH
Q 021951 284 GSSYTYLNRVTYQTLT 299 (305)
Q Consensus 284 GTs~~~lp~~~~~~l~ 299 (305)
||+++++|++++++|.
T Consensus 218 GTs~~~lP~~~~~~i~ 233 (317)
T cd06098 218 GTSLLAGPTTIVTQIN 233 (317)
T ss_pred CCcceeCCHHHHHhhh
Confidence 9999999999988764
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.2e-38 Score=292.79 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=176.9
Q ss_pred cCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCC--CCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCC
Q 021951 63 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC--VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPA 140 (305)
Q Consensus 63 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C--~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~ 140 (305)
+.+..|+++|.||||+|++.|+|||||+++||+|. .|..| ....++.|+|++|+ +|+. .
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss------T~~~------------~ 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS------TYKE------------N 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe------eeeE------------C
Confidence 34789999999999999999999999999999998 88753 22356789998883 2221 3
Q ss_pred CceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCC-CCCCCCcceEEecCCCCC------hHHHHhhh
Q 021951 141 QCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVP-GASYHPLDGILGLGKGKS------SIVSQLHS 213 (305)
Q Consensus 141 ~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~ql~~ 213 (305)
.|.|.+.|++| .+.|.+++|+|+|+ +..+ ++.|||+..... .+.....+||||||++.. +++.+|.+
T Consensus 65 ~~~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 65 GTEFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CEEEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 68999999999 59999999999995 4444 578999987522 233456899999998754 46778999
Q ss_pred cccc-ceeeEEeecCC----CcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeC-CCCEEEeccc
Q 021951 214 QKLI-RNVVGHCLSGG----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGS 285 (305)
Q Consensus 214 ~~~i-~~~Fs~~L~~~----~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~iiDSGT 285 (305)
++.| +++||+||.+. ..|.|+||+.+ ++.+++.|+|+... .+|+|.+++|+|+++.+... ...+||||||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGt 216 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT--GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGA 216 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC--ceEEEEecEEEECCEEEecCCCCEEEECCCc
Confidence 9999 89999999853 47999999775 46799999999765 59999999999999987653 3679999999
Q ss_pred cceeecHHHHHHHHHHHhc
Q 021951 286 SYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 286 s~~~lp~~~~~~l~~~~~~ 304 (305)
++++||.++|++|.+++++
T Consensus 217 s~~~lP~~~~~~l~~~~~~ 235 (326)
T cd05487 217 SFISGPTSSISKLMEALGA 235 (326)
T ss_pred cchhCcHHHHHHHHHHhCC
Confidence 9999999999999998864
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.2e-38 Score=301.29 Aligned_cols=220 Identities=19% Similarity=0.259 Sum_probs=178.4
Q ss_pred CceeEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCC
Q 021951 52 SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAP 131 (305)
Q Consensus 52 ~~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~ 131 (305)
....+||.+ +.+.+|+++|+||||||++.|+|||||+++||+|. .|..|..+.++.|||++|+ +|..
T Consensus 126 ~~~~v~L~n--~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss------T~~~---- 192 (453)
T PTZ00147 126 EFDNVELKD--LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK------TYEK---- 192 (453)
T ss_pred CCCeeeccc--cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc------ceEE----
Confidence 345677754 34789999999999999999999999999999999 8986555567899999883 2222
Q ss_pred CCCCCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC---CCCCCcceEEecCCCCCh--
Q 021951 132 GHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKSS-- 206 (305)
Q Consensus 132 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~---~~~~~~~GIlGLg~~~~s-- 206 (305)
..+.|.+.|++| .+.|.+++|+|+|+ +..++ ..|+|+.+.... +.....|||||||++.++
T Consensus 193 --------~~~~f~i~Yg~G-svsG~~~~DtVtiG----~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 193 --------DGTKVEMNYVSG-TVSGFFSKDLVTIG----NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred --------CCCEEEEEeCCC-CEEEEEEEEEEEEC----CEEEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 356899999999 69999999999994 45555 579988765221 233468999999998654
Q ss_pred ----HHHHhhhcccc-ceeeEEeecC--CCcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeCCC
Q 021951 207 ----IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNL 277 (305)
Q Consensus 207 ----~~~ql~~~~~i-~~~Fs~~L~~--~~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~ 277 (305)
++.+|..++.| +++||+||.+ ...|.|+||+.+ ++.+++.|+|+... .+|.|.++ +.+++.. ....
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~--~~W~V~l~-~~vg~~~--~~~~ 333 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD--LYWQVDLD-VHFGNVS--SEKA 333 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC--ceEEEEEE-EEECCEe--cCce
Confidence 56789999999 8899999985 357999999875 46799999999754 69999998 5777653 3457
Q ss_pred CEEEeccccceeecHHHHHHHHHHHh
Q 021951 278 PVVFDSGSSYTYLNRVTYQTLTSIVK 303 (305)
Q Consensus 278 ~~iiDSGTs~~~lp~~~~~~l~~~~~ 303 (305)
.+||||||+++++|++++++|.+++.
T Consensus 334 ~aIiDSGTsli~lP~~~~~ai~~~l~ 359 (453)
T PTZ00147 334 NVIVDSGTSVITVPTEFLNKFVESLD 359 (453)
T ss_pred eEEECCCCchhcCCHHHHHHHHHHhC
Confidence 89999999999999999999999875
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.7e-38 Score=282.14 Aligned_cols=213 Identities=29% Similarity=0.477 Sum_probs=179.9
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCC--CCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeE
Q 021951 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPL--YRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (305)
Q Consensus 68 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~--y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (305)
|+++|.||||+|++.|++||||+++||+|. .|..|..+.... |++..|. .| .+..|.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~-----------------~~-~~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS-----------------TY-KDTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc-----------------ee-ecCCCEEE
Confidence 789999999999999999999999999999 999887654443 4443331 11 12578999
Q ss_pred eeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCCCCcceEEecCCCC------ChHHHHhhhcccc-c
Q 021951 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGK------SSIVSQLHSQKLI-R 218 (305)
Q Consensus 146 ~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~ 218 (305)
+.|++| .+.|.+++|+|+|+ +..++++.|||++...........+||||||+.. .+++.||.+++.| +
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~~----~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTIG----GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEECCC-eEEEEEEEeEEEEC----CEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 999998 89999999999995 4557899999998874434456799999999998 7899999999988 9
Q ss_pred eeeEEeecCC----CcceEEECCCCC--CCCCcEEEEcccCCCcceeeEeeEEEECCE--EeeeCCCCEEEeccccceee
Q 021951 219 NVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGE--TTGLKNLPVVFDSGSSYTYL 290 (305)
Q Consensus 219 ~~Fs~~L~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~--~~~~~~~~~iiDSGTs~~~l 290 (305)
++||+||.+. ..|.|+||+.+. ..+++.|+|++.....+|.|.+++|.+++. ........++|||||++++|
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l 216 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL 216 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence 9999999963 689999998754 578999999998622799999999999997 44445689999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 021951 291 NRVTYQTLTSIVKR 304 (305)
Q Consensus 291 p~~~~~~l~~~~~~ 304 (305)
|+++|++|.+++.+
T Consensus 217 p~~~~~~l~~~~~~ 230 (283)
T cd05471 217 PSSVYDAILKALGA 230 (283)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999875
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.5e-38 Score=295.72 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=176.1
Q ss_pred eCCCCeE-EEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCC---------CCCCCCCCce
Q 021951 74 IGQPARP-YFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH---------HNCEDPAQCD 143 (305)
Q Consensus 74 iGtP~q~-~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~---------~~c~~~~~~~ 143 (305)
+|||-.+ +.|++||||+++||+|. +|.. ..|. .++|+++.|.....+.+ ..|.. +.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~s------st~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGHS------STYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCCc------CCCC----ccCcCChhhccccccCCCccccCCCCCCCCC-CcCe
Confidence 6888888 99999999999999998 6532 2343 49999999987654322 24533 4698
Q ss_pred eEee-eCCCCeEEEEEEEEEEEEeecCCCc----CCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccc
Q 021951 144 YELE-YADGGSSLGVLVKDAFAFNYTNGQR----LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (305)
Q Consensus 144 ~~~~-Y~~Gs~~~G~~~~D~v~l~~~~g~~----~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~ 218 (305)
|... |++|+...|.+++|+|+|+..+|.. .++++.|||+.+..........|||||||++.+|++.||..++..+
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~ 149 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVA 149 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCC
Confidence 8765 8899999999999999998655543 6789999999875222223458999999999999999998876567
Q ss_pred eeeEEeecC--CCcceEEECCCCC--------CCCCcEEEEcccCCC--cceeeEeeEEEECCEEeeeC----------C
Q 021951 219 NVVGHCLSG--GGGGFLFFGDDLY--------DSSRVVWTSMSSDYT--KYYSPGVAELFFGGETTGLK----------N 276 (305)
Q Consensus 219 ~~Fs~~L~~--~~~G~l~fG~~~~--------~~g~~~~~pl~~~~~--~~y~v~l~~i~v~~~~~~~~----------~ 276 (305)
++|||||.+ ...|+|+||+.+. ..++++|+||+.++. .+|.|++++|+||++.+.++ .
T Consensus 150 ~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 150 RKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred cceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 899999985 3479999997652 137899999998732 69999999999999988652 3
Q ss_pred CCEEEeccccceeecHHHHHHHHHHHhc
Q 021951 277 LPVVFDSGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 304 (305)
+++||||||++++||+++|++|.++|.+
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~ 257 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAK 257 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHH
Confidence 6899999999999999999999999875
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.6e-37 Score=292.28 Aligned_cols=219 Identities=20% Similarity=0.289 Sum_probs=175.1
Q ss_pred ceeEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCC
Q 021951 53 SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPG 132 (305)
Q Consensus 53 ~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~ 132 (305)
...+||.+ +.+.+|+++|.||||+|++.|+|||||+++||+|. .|..+..+.++.|+|++|. +|+.
T Consensus 126 ~~~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss------T~~~----- 191 (450)
T PTZ00013 126 NDVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK------SYEK----- 191 (450)
T ss_pred CCceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc------cccc-----
Confidence 44466654 34779999999999999999999999999999999 8974333356889998873 1111
Q ss_pred CCCCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC---CCCCCcceEEecCCCCC----
Q 021951 133 HHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKS---- 205 (305)
Q Consensus 133 ~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~---~~~~~~~GIlGLg~~~~---- 205 (305)
..|.|.+.|++| .+.|.+++|+|+|+ +..++ ..|+++.+.... +.....+||||||++.+
T Consensus 192 -------~~~~~~i~YG~G-sv~G~~~~Dtv~iG----~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 192 -------DGTKVDITYGSG-TVKGFFSKDLVTLG----HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred -------CCcEEEEEECCc-eEEEEEEEEEEEEC----CEEEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 357999999999 59999999999994 45554 578888764221 23346899999999854
Q ss_pred --hHHHHhhhcccc-ceeeEEeecC--CCcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeCCCC
Q 021951 206 --SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLP 278 (305)
Q Consensus 206 --s~~~ql~~~~~i-~~~Fs~~L~~--~~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 278 (305)
+++.+|+++++| +++||+||.+ ...|.|+||+.+ ++.+++.|+|+... .+|.|.++ +.++.... ....
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~--~yW~I~l~-v~~G~~~~--~~~~ 333 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD--LYWQIDLD-VHFGKQTM--QKAN 333 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC--ceEEEEEE-EEECceec--cccc
Confidence 467899999999 7899999984 357999999875 46799999999765 59999998 67765443 4578
Q ss_pred EEEeccccceeecHHHHHHHHHHHh
Q 021951 279 VVFDSGSSYTYLNRVTYQTLTSIVK 303 (305)
Q Consensus 279 ~iiDSGTs~~~lp~~~~~~l~~~~~ 303 (305)
+||||||+++++|+++++++.++++
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~ 358 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLN 358 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhC
Confidence 9999999999999999999998875
No 20
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.3e-37 Score=288.29 Aligned_cols=210 Identities=20% Similarity=0.235 Sum_probs=165.3
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEe
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~ 146 (305)
.|+++|.||||+|++.|+|||||+++||+|. .|.. .++.|+|++|. +|+. ..|.|.+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss------T~~~------------~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS------TYRD------------LGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc------Cccc------------CCceEEE
Confidence 6999999999999999999999999999998 7743 34789999883 1211 3679999
Q ss_pred eeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCC-CCCcceEEecCCCCC--------hHHHHhhhcccc
Q 021951 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGAS-YHPLDGILGLGKGKS--------SIVSQLHSQKLI 217 (305)
Q Consensus 147 ~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~-~~~~~GIlGLg~~~~--------s~~~ql~~~~~i 217 (305)
.|++| .+.|.+++|+|+|++. ......+.|+++......+. ....+||||||++.+ +++.+|.+|+.+
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EECcc-eEEEEEEEEEEEECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 99999 6799999999999531 11112234566654422222 235799999998754 466788888878
Q ss_pred ceeeEEeecC-----------CCcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeC-----CCCE
Q 021951 218 RNVVGHCLSG-----------GGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-----NLPV 279 (305)
Q Consensus 218 ~~~Fs~~L~~-----------~~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~-----~~~~ 279 (305)
+++||+||.. ...|+|+||+.+ ++.+++.|+|++.. .+|.|.+++|+|+++.+... ...+
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~--~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ 214 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE--WYYEVIILKLEVGGQSLNLDCKEYNYDKA 214 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc--eeEEEEEEEEEECCEecccccccccCccE
Confidence 7899998741 236999999764 56789999999876 59999999999999987643 1469
Q ss_pred EEeccccceeecHHHHHHHHHHHhc
Q 021951 280 VFDSGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 280 iiDSGTs~~~lp~~~~~~l~~~~~~ 304 (305)
||||||++++||+++|++|.+++++
T Consensus 215 ivDSGTs~~~lp~~~~~~l~~~l~~ 239 (364)
T cd05473 215 IVDSGTTNLRLPVKVFNAAVDAIKA 239 (364)
T ss_pred EEeCCCcceeCCHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5e-36 Score=269.33 Aligned_cols=176 Identities=41% Similarity=0.729 Sum_probs=153.4
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEe
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~ 146 (305)
+|+++|+||||+|++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999964 26789
Q ss_pred eeCCCCeEEEEEEEEEEEEeecCCCc--CCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccceeeEEe
Q 021951 147 EYADGGSSLGVLVKDAFAFNYTNGQR--LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC 224 (305)
Q Consensus 147 ~Y~~Gs~~~G~~~~D~v~l~~~~g~~--~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~ 224 (305)
.|+||+.++|.+++|+|+|+ +. .++++.|||+..... +.....+||||||+...|++.||..++ ++||+|
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~ 107 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYC 107 (265)
T ss_pred EeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEE
Confidence 99999899999999999995 44 678999999988744 455679999999999999999999886 899999
Q ss_pred ecC----CCcceEEECCCCC-CCCCcEEEEcccCC--CcceeeEeeEEEECCEEeee----------CCCCEEEeccccc
Q 021951 225 LSG----GGGGFLFFGDDLY-DSSRVVWTSMSSDY--TKYYSPGVAELFFGGETTGL----------KNLPVVFDSGSSY 287 (305)
Q Consensus 225 L~~----~~~G~l~fG~~~~-~~g~~~~~pl~~~~--~~~y~v~l~~i~v~~~~~~~----------~~~~~iiDSGTs~ 287 (305)
|.+ ...|+|+||+.+. +.+++.|+|++.++ ..+|.|.+++|+|+++.+.+ ....+||||||++
T Consensus 108 l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~ 187 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTL 187 (265)
T ss_pred ccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcc
Confidence 985 4579999998754 57899999999862 27999999999999998752 3478999999999
Q ss_pred eeecHHHH
Q 021951 288 TYLNRVTY 295 (305)
Q Consensus 288 ~~lp~~~~ 295 (305)
++||+++|
T Consensus 188 ~~lp~~~~ 195 (265)
T cd05476 188 TYLPDPAY 195 (265)
T ss_pred eEcCcccc
Confidence 99999876
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.5e-34 Score=260.73 Aligned_cols=181 Identities=25% Similarity=0.407 Sum_probs=158.6
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEe
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~ 146 (305)
.|+++|.||||+|++.|+|||||+++||+ .|.+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 59999999999999999999999999996 3568
Q ss_pred eeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCCCCcceEEecCCCCC-----------hHHHHhhhcc
Q 021951 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKS-----------SIVSQLHSQK 215 (305)
Q Consensus 147 ~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~~ 215 (305)
.|++|+.+.|.+++|+|+|+ +..+.++.|||+++. ...+||||||+... +++.||.+++
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIG----GATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEEC----CeEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 89998899999999999995 456789999999874 24799999999875 6999999999
Q ss_pred cc-ceeeEEeecC--CCcceEEECCCC--CCCCCcEEEEcccCCC----cceeeEeeEEEECCEEee----eCCCCEEEe
Q 021951 216 LI-RNVVGHCLSG--GGGGFLFFGDDL--YDSSRVVWTSMSSDYT----KYYSPGVAELFFGGETTG----LKNLPVVFD 282 (305)
Q Consensus 216 ~i-~~~Fs~~L~~--~~~G~l~fG~~~--~~~g~~~~~pl~~~~~----~~y~v~l~~i~v~~~~~~----~~~~~~iiD 282 (305)
.| +++||+||.+ ...|.|+||+.+ ++.+++.|+|+..... .+|.|.+++|.++++.+. .....+|||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiD 184 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLD 184 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEEC
Confidence 99 7999999996 358999999764 4678999999998742 589999999999988753 245799999
Q ss_pred ccccceeecHHHHHHHHHHHhc
Q 021951 283 SGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 283 SGTs~~~lp~~~~~~l~~~~~~ 304 (305)
|||++++||.++|++|.+++.+
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~ 206 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGA 206 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCC
Confidence 9999999999999999999865
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.2e-34 Score=262.92 Aligned_cols=212 Identities=29% Similarity=0.497 Sum_probs=174.0
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCC-CCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeE
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC-VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C-~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (305)
+|+++|.||||+|++.|++||||+++||++. .|..| .......|++.+|. .|.. ..+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~------t~~~------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS------TFSN------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST------TEEE------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc------cccc------------ceeeee
Confidence 5999999999999999999999999999998 88876 33355789887662 1221 245799
Q ss_pred eeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCC-------CChHHHHhhhcccc
Q 021951 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG-------KSSIVSQLHSQKLI 217 (305)
Q Consensus 146 ~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~-------~~s~~~ql~~~~~i 217 (305)
+.|++|+ ++|.++.|+|+| |+..+.++.||++...... +.....+||||||+. ..+++.+|.+++.|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred eeccCcc-cccccccceEee----eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999995 999999999999 4677788999999885221 334678999999975 35789999999999
Q ss_pred -ceeeEEeecCCC--cceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCE-EeeeCCCCEEEeccccceeec
Q 021951 218 -RNVVGHCLSGGG--GGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGE-TTGLKNLPVVFDSGSSYTYLN 291 (305)
Q Consensus 218 -~~~Fs~~L~~~~--~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~-~~~~~~~~~iiDSGTs~~~lp 291 (305)
+++||++|.+.. .|.|+||+.+ ++.+++.|+|+... .+|.+.+++|.+++. ........++||||+++++||
T Consensus 137 ~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~--~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 137 SSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS--GYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST--TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEE
T ss_pred cccccceeeeecccccchheeeccccccccCceeccCcccc--cccccccccccccccccccccceeeeccccccccccc
Confidence 899999999653 7999999764 45789999999955 699999999999998 333334679999999999999
Q ss_pred HHHHHHHHHHHhc
Q 021951 292 RVTYQTLTSIVKR 304 (305)
Q Consensus 292 ~~~~~~l~~~~~~ 304 (305)
.+++++|.+++..
T Consensus 215 ~~~~~~i~~~l~~ 227 (317)
T PF00026_consen 215 RSIFDAIIKALGG 227 (317)
T ss_dssp HHHHHHHHHHHTT
T ss_pred chhhHHHHhhhcc
Confidence 9999999999864
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.8e-31 Score=221.82 Aligned_cols=156 Identities=41% Similarity=0.759 Sum_probs=123.8
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCcccccCcCCCCCCCCCCCCCce
Q 021951 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQCD 143 (305)
Q Consensus 68 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S----~v~c~s~~C~~~~~~~~~~c~~~~~~~ 143 (305)
|+++|.||||+|++.|++||||+++|++|. .+.|+|++| .++|.++.|...+......|..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999883 478999998 699999999987653122334458899
Q ss_pred eEeeeCCCCeEEEEEEEEEEEEeecCCC-cCCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccceeeE
Q 021951 144 YELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVG 222 (305)
Q Consensus 144 ~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs 222 (305)
|.+.|++++.+.|.+++|+|+++..++. ..+.++.|||++..... ....+||||||+.++||++||.++ ..++||
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~--~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL--FYGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS--STTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC--CcCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 9999999999999999999999875432 45678999999887532 238999999999999999999988 688999
Q ss_pred EeecC---CCcceEEECC
Q 021951 223 HCLSG---GGGGFLFFGD 237 (305)
Q Consensus 223 ~~L~~---~~~G~l~fG~ 237 (305)
|||.+ ...|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99997 5689999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=4e-23 Score=160.67 Aligned_cols=107 Identities=28% Similarity=0.469 Sum_probs=87.8
Q ss_pred EEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCC-CCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEeee
Q 021951 70 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY-RPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEY 148 (305)
Q Consensus 70 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y-~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~~Y 148 (305)
++|.||||+|++.|+|||||+++||+|. .|..|..+.++.| +|++|. .+ ....|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss------t~------------~~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS------TY------------SDNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC------CC------------CCCCcEEEEEe
Confidence 4799999999999999999999999999 8998876666667 887662 01 12468999999
Q ss_pred CCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEec
Q 021951 149 ADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGL 200 (305)
Q Consensus 149 ~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGL 200 (305)
++| .+.|.++.|+|+|+ ...++++.|||+...... +.....+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSIG----DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEEC----CEEECCEEEEEEEecCCccccccccccccCC
Confidence 999 68899999999994 566889999999887443 334578999998
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.16 E-value=8.7e-06 Score=60.84 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=63.6
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEe
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~ 146 (305)
.|++++.|+ .+++.+++|||++.+|+... ....+.. .. .......+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~---------------------------~~~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PL---------------------------TLGGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Cc---------------------------cCCCcEEE
Confidence 589999999 59999999999999999764 1111110 00 01235567
Q ss_pred eeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCCCCcceEEecCC
Q 021951 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (305)
Q Consensus 147 ~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~ 202 (305)
..++|.........+.++| |+....++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc-----CCceEeChHH
Confidence 7788866666777889999 455566777766644311 5899999864
No 27
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=97.20 E-value=0.00027 Score=58.59 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.7
Q ss_pred CCCCEEEeccccceeecHHHHHHHHHHHhc
Q 021951 275 KNLPVVFDSGSSYTYLNRVTYQTLTSIVKR 304 (305)
Q Consensus 275 ~~~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 304 (305)
..+.+||||||++|+||+++|++|+++|.+
T Consensus 28 ~~g~~iiDSGT~~T~L~~~~y~~l~~al~~ 57 (161)
T PF14541_consen 28 GSGGTIIDSGTTYTYLPPPVYDALVQALDA 57 (161)
T ss_dssp STCSEEE-SSSSSEEEEHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCccCCcHHHHHHHHHHHHH
Confidence 358899999999999999999999999976
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.91 E-value=0.01 Score=46.78 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=63.9
Q ss_pred EEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCC
Q 021951 56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHN 135 (305)
Q Consensus 56 ~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~ 135 (305)
+++..+. ++.|++++.|. .+++.+++|||++.+-+... --.... .++..
T Consensus 2 ~~i~~~~--~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~~-------------------- 50 (121)
T TIGR02281 2 VQLAKDG--DGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRLG------LDLNR-------------------- 50 (121)
T ss_pred EEEEEcC--CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC------CCccc--------------------
Confidence 4565543 88999999997 48999999999999987653 111100 11100
Q ss_pred CCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCCCCcceEEecCC
Q 021951 136 CEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (305)
Q Consensus 136 c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~ 202 (305)
......+.=+.|......+.-|.+.+ |.....|+.+.+.... ...+|+||+.+
T Consensus 51 ----~~~~~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 51 ----LGYTVTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred ----CCceEEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC------cCCceEcCHHH
Confidence 01133344455644455668899999 5667777777665332 12389999853
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.01 E-value=0.076 Score=38.62 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCCCCCCceeEeeeC
Q 021951 70 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYA 149 (305)
Q Consensus 70 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~~c~~~~~~~~~~~Y~ 149 (305)
+++.|+ .+++.+++|||++...+... -+.... ..+.. ......+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~~------------------------~~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKPRP------------------------KSVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCCcC------------------------CceeEEEEeC
Confidence 356777 48999999999998877643 221110 00000 1112344445
Q ss_pred CCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCCCCCCCcceEEecC
Q 021951 150 DGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLG 201 (305)
Q Consensus 150 ~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 201 (305)
+|........-+.++++ .....++.|-... .....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig----~~~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIG----GITLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEEC----CEEEEeEEEEEEC------CCCCCEEEeCCc
Confidence 55445555666788884 4555566655543 134579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.04 E-value=0.27 Score=38.75 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.6
Q ss_pred CeeEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 65 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
...+++++.|+ ++++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45689999998 58899999999999998754
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.82 E-value=0.22 Score=36.78 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.5
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 68 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
|++++.|+ .+++.+++||||+..++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 49999999999999999764
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=90.27 E-value=0.82 Score=35.89 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred cceeeEeeEEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 256 KYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 256 ~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
++|.+ .+.+||+.+ .++||||++.+.+++++.+++
T Consensus 10 g~~~v---~~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 55544 566788755 479999999999999998876
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=89.03 E-value=0.72 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.9
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+.++|+.+ .++||||++.+.+.+++++++
T Consensus 2 ~v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 367788755 479999999999999999876
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.96 E-value=0.86 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.8
Q ss_pred CeeEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 65 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.+.+++++.||. +.+.+++|||++...|..+
T Consensus 6 ~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 678999999996 9999999999999988765
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.07 E-value=1.1 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.4
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLT 299 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 299 (305)
.+.|+|+.+. +.||||++.+.++++.+..+.
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHhC
Confidence 5778888775 699999999999999998663
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.75 E-value=2 Score=30.27 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=25.3
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+.++++.+. ++||||++..+++.++.+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 4667776654 79999999999999999886
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.39 E-value=7.3 Score=33.46 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred eEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCC
Q 021951 55 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHH 134 (305)
Q Consensus 55 ~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~ 134 (305)
.+-|..+. +|.|.++..|- .|++..++|||.+.+-+... .... =-|+..+.
T Consensus 95 ~v~Lak~~--~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA~R------lGid~~~l------------------ 145 (215)
T COG3577 95 EVSLAKSR--DGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DARR------LGIDLNSL------------------ 145 (215)
T ss_pred EEEEEecC--CCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HHHH------hCCCcccc------------------
Confidence 45565554 89999999998 59999999999999887654 1111 12333211
Q ss_pred CCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCce
Q 021951 135 NCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRL 177 (305)
Q Consensus 135 ~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~ 177 (305)
+.++.+.-++|..-...+--|.|.|+ .+.+.++
T Consensus 146 ------~y~~~v~TANG~~~AA~V~Ld~v~IG----~I~~~nV 178 (215)
T COG3577 146 ------DYTITVSTANGRARAAPVTLDRVQIG----GIRVKNV 178 (215)
T ss_pred ------CCceEEEccCCccccceEEeeeEEEc----cEEEcCc
Confidence 23555666788666677889999994 4544444
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=82.33 E-value=2.1 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.4
Q ss_pred EEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 265 LFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 265 i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
+.+||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567887765 69999999999999988764
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.51 E-value=2.7 Score=31.27 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.4
Q ss_pred EEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 69 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 69 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
+++|.|.. +++.+++||||+..-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 56777774 7999999999999888765
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=81.20 E-value=3.4 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=24.4
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+.+|++.+. ++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~-----~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-----FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-----EEEECCCCcEEcCHHHHHHc
Confidence 5667776654 79999999999999887765
No 41
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=76.64 E-value=4.5 Score=31.72 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+.++|..+. ++||||++.+.++++..+++
T Consensus 20 ~~~Ing~~~~-----~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 20 NVEINGVPVK-----AFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEEECCEEEE-----EEEeCCCceEEeCHHHHHHc
Confidence 3556777653 79999999999999998864
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=76.04 E-value=4.2 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=20.9
Q ss_pred EEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 71 TMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 71 ~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
++.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 69999999999999998754
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.44 E-value=3.9 Score=30.33 Aligned_cols=29 Identities=10% Similarity=0.360 Sum_probs=23.3
Q ss_pred eEEEECCEEeeeCCCCEEEeccccceeecHHHHH
Q 021951 263 AELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQ 296 (305)
Q Consensus 263 ~~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~ 296 (305)
..|.++|+.+. ++||||+..++++.+.+.
T Consensus 8 i~v~i~g~~i~-----~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 8 ITVKINGKKIK-----ALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEEETTEEEE-----EEEETTBSSEEESSGGSS
T ss_pred EEEeECCEEEE-----EEEecCCCcceecccccc
Confidence 35777888665 799999999999987653
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=72.81 E-value=5.2 Score=29.09 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 71 TMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 71 ~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.+.|. .+++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45555 48999999999999998755
No 45
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=65.96 E-value=7.5 Score=28.87 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=23.9
Q ss_pred EEECC-EEeeeCCCCEEEeccccceeecHHHHHHHH
Q 021951 265 LFFGG-ETTGLKNLPVVFDSGSSYTYLNRVTYQTLT 299 (305)
Q Consensus 265 i~v~~-~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 299 (305)
+.+++ +.+ .+.+|||++...+|...|..+.
T Consensus 3 ~~i~g~~~v-----~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGKQSV-----KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCceeE-----EEEEecCCEEEeccHHHHhhhc
Confidence 45666 333 4799999999999999999875
No 46
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=65.76 E-value=5 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.9
Q ss_pred CCEEEecccccee-ecHHHHHHH
Q 021951 277 LPVVFDSGSSYTY-LNRVTYQTL 298 (305)
Q Consensus 277 ~~~iiDSGTs~~~-lp~~~~~~l 298 (305)
-.++||||.+... +|.++++.+
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 3589999999886 999999875
No 47
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.60 E-value=5.4 Score=31.32 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEecccc-ceeecHHHHHHH
Q 021951 279 VVFDSGSS-YTYLNRVTYQTL 298 (305)
Q Consensus 279 ~iiDSGTs-~~~lp~~~~~~l 298 (305)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999986
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=62.02 E-value=14 Score=29.25 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=23.6
Q ss_pred EEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 264 ~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+++||+.+. |+||||+-.+.++.+..+++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 5677888774 89999999999999998874
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=60.95 E-value=12 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.3
Q ss_pred EEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 69 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 69 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
...+.++.-..++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44455555568999999999999888754
No 50
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=60.51 E-value=77 Score=29.81 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred eeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeec---------------CCCCCCCCcceEEecCCCCChH---
Q 021951 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQ---------------VPGASYHPLDGILGLGKGKSSI--- 207 (305)
Q Consensus 146 ~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~---------------~~~~~~~~~~GIlGLg~~~~s~--- 207 (305)
..|++| +.=|.+.+-.|+| |+....++.+-.+.+. ........+.||||+|.-...-
T Consensus 82 ~~F~sg-ytWGsVr~AdV~i----gge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~ 156 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTI----GGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAA 156 (370)
T ss_pred hhccCc-ccccceEEEEEEE----cCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCch
Q ss_pred --------------------HHHhhhcccc-ceeeEEeec----------------CCCcceEEEC----CCCCCCCCcE
Q 021951 208 --------------------VSQLHSQKLI-RNVVGHCLS----------------GGGGGFLFFG----DDLYDSSRVV 246 (305)
Q Consensus 208 --------------------~~ql~~~~~i-~~~Fs~~L~----------------~~~~G~l~fG----~~~~~~g~~~ 246 (305)
...+.....+ .++..+-.+ ....|.|+|| ......+...
T Consensus 157 C~~sa~~~~YY~C~~~~sCt~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~ 236 (370)
T PF11925_consen 157 CAQSALPGNYYSCPSGGSCTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGAT 236 (370)
T ss_pred hhcccCCCceEECCCCCCeecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccce
Q ss_pred EEEcccCCCcceeeEeeEEEECCEEeeeCCCCEEEeccccceeecH
Q 021951 247 WTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNR 292 (305)
Q Consensus 247 ~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTs~~~lp~ 292 (305)
..+.... ++..-..++-.+... .||||+.-.+++.
T Consensus 237 ~~~~~~~--G~~tt~~~G~t~~~s---------f~DSGSNg~fF~d 271 (370)
T PF11925_consen 237 VLTTDSN--GDFTTTFNGQTYSAS---------FFDSGSNGYFFPD 271 (370)
T ss_pred EEeecCC--ceEEEEecCceeeee---------eEecCCceeeccC
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=51.37 E-value=25 Score=30.23 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=30.9
Q ss_pred EcccCCCcceeeEeeEEEECCEEeeeCCCCEEEeccccceeecHHHHHHH
Q 021951 249 SMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 249 pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (305)
-+.....++|.+ ...|||+.+. .+||||.|...|+++..+.+
T Consensus 97 ~Lak~~~GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 97 SLAKSRDGHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEecCCCcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 333333355654 5778999886 59999999999999887665
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.41 E-value=63 Score=25.49 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CeeEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 65 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
...+|++++|.. +++.+++|||...+-+..+
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHH
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHH
Confidence 346899999995 9999999999999888754
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.23 E-value=46 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=19.3
Q ss_pred EEEEeCCCC----eEEEEEEECCCCcee-Ee
Q 021951 70 VTMYIGQPA----RPYFLDLDTGSDLTW-LQ 95 (305)
Q Consensus 70 ~~i~iGtP~----q~~~v~~DTGSs~~W-v~ 95 (305)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 567787773 267899999998764 44
No 54
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=33.71 E-value=1.2e+02 Score=24.12 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.7
Q ss_pred CEEEeccccceeecHHHHHHH
Q 021951 278 PVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 278 ~~iiDSGTs~~~lp~~~~~~l 298 (305)
.++||||++-.++..+....+
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEecCCCcEEccHHHHHhc
Confidence 479999999999998877653
No 55
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=30.40 E-value=82 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 021951 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 67 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.-.+.+.|.+ ++..+++|+|++...|..+
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 4678888886 8899999999999988654
No 56
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=29.95 E-value=41 Score=30.26 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=26.3
Q ss_pred eeEEEeecccCCeeEEEE---EEeCCCC--------eEEEEEEECCCCceeEecC
Q 021951 54 LLFQVHGNVYPTGYYNVT---MYIGQPA--------RPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 54 ~~~pl~~~~~~~~~Y~~~---i~iGtP~--------q~~~v~~DTGSs~~Wv~~~ 97 (305)
.-+|+..+.-....|.++ |+||.-. ....+++|||+++++++..
T Consensus 134 ~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred eECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 345554321112456655 5777421 1235899999999999854
No 57
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=27.93 E-value=67 Score=29.26 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=22.5
Q ss_pred eeEEEE---EEeCCC-----CeEEEEEEECCCCceeEecC
Q 021951 66 GYYNVT---MYIGQP-----ARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 66 ~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.+|.++ |.||.. .+...+++|||++.+++|-.
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 456554 577752 23357999999999999854
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=26.06 E-value=1.8e+02 Score=24.20 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.6
Q ss_pred CCEEEeccccceeecHHHHHHHH
Q 021951 277 LPVVFDSGSSYTYLNRVTYQTLT 299 (305)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~ 299 (305)
..+++|||++..+.-+++.+.|.
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 46899999999999998887763
No 59
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=25.90 E-value=77 Score=28.12 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=22.9
Q ss_pred eeEEEE---EEeCC---CCeEEEEEEECCCCceeEecC
Q 021951 66 GYYNVT---MYIGQ---PARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 66 ~~Y~~~---i~iGt---P~q~~~v~~DTGSs~~Wv~~~ 97 (305)
..|.++ |+||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456555 57873 223457999999999999865
No 60
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=25.10 E-value=56 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.3
Q ss_pred CEEEeccccceeecHHHHHHH
Q 021951 278 PVVFDSGSSYTYLNRVTYQTL 298 (305)
Q Consensus 278 ~~iiDSGTs~~~lp~~~~~~l 298 (305)
.+++|+|.+...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 579999999999999988764
No 61
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=24.87 E-value=72 Score=27.90 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=27.8
Q ss_pred eeEEEeecccCCeeEEEE---EEeCC-----CCeEEEEEEECCCCceeEecC
Q 021951 54 LLFQVHGNVYPTGYYNVT---MYIGQ-----PARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 54 ~~~pl~~~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.-+|+..+ ....|.+. |.||. ......++||||++.+|++..
T Consensus 170 ~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 170 TYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred EEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 34555432 13456554 46665 245679999999999999865
No 62
>PF15409 PH_8: Pleckstrin homology domain
Probab=24.03 E-value=2.2e+02 Score=20.99 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCCEEEeccccceee---cHHHHHHHHHHHhc
Q 021951 276 NLPVVFDSGSSYTYL---NRVTYQTLTSIVKR 304 (305)
Q Consensus 276 ~~~~iiDSGTs~~~l---p~~~~~~l~~~~~~ 304 (305)
...+.||||..+..| .++.|+.++++|.+
T Consensus 56 ~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 56 SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 467899999987766 57889999988875
No 63
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=22.46 E-value=1.5e+02 Score=23.41 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=33.4
Q ss_pred ECCCCCCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeCCCCEEEecc
Q 021951 235 FGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSG 284 (305)
Q Consensus 235 fG~~~~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSG 284 (305)
+.|.+.+..+++--++ .. +.|.|..+-+...|..+.......+||+-
T Consensus 76 ~~G~efYGk~ltlp~l-~d--G~ytvk~eiL~s~g~vV~t~s~~~~IDtt 122 (124)
T PF13752_consen 76 SNGKEFYGKELTLPAL-GD--GTYTVKSEILDSQGTVVQTYSYPFTIDTT 122 (124)
T ss_pred eCCceeeeeEEEeccC-CC--CcEEEEEEeeccCCCEEEeeeEeEEEecc
Confidence 3344444445554444 33 68999999999999988877788999973
No 64
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=20.43 E-value=53 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.3
Q ss_pred CeEEEEEEECCCCceeEecC
Q 021951 78 ARPYFLDLDTGSDLTWLQCD 97 (305)
Q Consensus 78 ~q~~~v~~DTGSs~~Wv~~~ 97 (305)
.++..++||+||...+|--.
T Consensus 10 ~~~~~~LlDsGSq~SfIt~~ 29 (164)
T PF05585_consen 10 QVEARALLDSGSQRSFITES 29 (164)
T ss_pred EEEEEEEEecCCchhHHhHH
Confidence 46678999999999988643
Done!