Query 021952
Match_columns 305
No_of_seqs 154 out of 1607
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1230 Protein containing rep 100.0 2E-39 4.4E-44 273.3 20.6 258 10-302 62-340 (521)
2 KOG4693 Uncharacterized conser 100.0 2.5E-39 5.4E-44 258.9 18.8 263 2-305 54-348 (392)
3 PLN02153 epithiospecifier prot 100.0 1.3E-37 2.9E-42 274.4 29.5 258 2-302 7-284 (341)
4 PLN02193 nitrile-specifier pro 100.0 2.5E-37 5.5E-42 282.4 30.3 254 3-302 152-410 (470)
5 KOG0379 Kelch repeat-containin 100.0 2.2E-36 4.8E-41 275.6 25.3 230 10-280 56-287 (482)
6 PLN02153 epithiospecifier prot 100.0 1.7E-35 3.6E-40 261.1 28.5 252 3-303 61-340 (341)
7 PLN02193 nitrile-specifier pro 100.0 1.5E-35 3.2E-40 270.8 28.6 249 3-303 204-469 (470)
8 PHA02713 hypothetical protein; 100.0 1.2E-33 2.7E-38 262.4 25.2 223 3-279 283-523 (557)
9 TIGR03548 mutarot_permut cycli 100.0 1.1E-32 2.4E-37 241.4 26.1 236 2-285 51-320 (323)
10 KOG4693 Uncharacterized conser 100.0 1.4E-33 3E-38 226.0 18.2 238 1-280 1-262 (392)
11 KOG0379 Kelch repeat-containin 100.0 8.5E-33 1.8E-37 252.1 24.4 236 3-277 99-341 (482)
12 PHA03098 kelch-like protein; P 100.0 2.1E-32 4.5E-37 255.4 25.8 213 15-280 285-499 (534)
13 KOG4441 Proteins containing BT 100.0 1.7E-32 3.8E-37 253.9 24.0 221 3-278 312-532 (571)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 2.4E-31 5.3E-36 235.3 25.2 227 3-281 42-334 (346)
15 KOG4152 Host cell transcriptio 100.0 7E-32 1.5E-36 233.3 18.6 235 2-278 17-274 (830)
16 PRK14131 N-acetylneuraminic ac 100.0 5.2E-31 1.1E-35 235.1 23.7 228 3-280 63-355 (376)
17 TIGR03548 mutarot_permut cycli 100.0 5.7E-30 1.2E-34 224.3 23.5 218 12-279 1-234 (323)
18 KOG4441 Proteins containing BT 100.0 9.4E-30 2E-34 235.7 22.2 214 12-279 273-486 (571)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 4.1E-29 8.9E-34 221.1 24.1 218 10-279 3-268 (346)
20 KOG1230 Protein containing rep 100.0 1.4E-29 3.1E-34 213.9 16.1 204 3-224 109-342 (521)
21 PRK14131 N-acetylneuraminic ac 100.0 3.5E-28 7.7E-33 216.9 22.9 227 3-279 18-290 (376)
22 PHA03098 kelch-like protein; P 100.0 3.7E-28 8E-33 226.9 23.9 197 3-249 322-520 (534)
23 PHA02790 Kelch-like protein; P 100.0 1.2E-27 2.6E-32 219.4 24.6 191 20-279 267-457 (480)
24 PHA02713 hypothetical protein; 100.0 9E-28 2E-32 223.3 23.6 199 26-279 259-474 (557)
25 KOG4152 Host cell transcriptio 100.0 7.6E-28 1.6E-32 208.4 18.4 238 3-278 68-342 (830)
26 PHA02790 Kelch-like protein; P 99.9 7.5E-26 1.6E-30 207.5 22.3 173 3-222 298-470 (480)
27 COG3055 Uncharacterized protei 99.9 5.8E-20 1.3E-24 153.8 19.2 247 3-292 71-373 (381)
28 KOG2437 Muskelin [Signal trans 99.8 4.6E-20 1E-24 160.0 3.8 191 2-207 239-457 (723)
29 COG3055 Uncharacterized protei 99.8 1E-16 2.3E-21 134.5 17.7 246 10-300 32-326 (381)
30 KOG2437 Muskelin [Signal trans 99.6 1.4E-15 3.1E-20 132.4 6.3 196 56-279 237-458 (723)
31 PF03089 RAG2: Recombination a 99.2 1.9E-09 4.1E-14 88.4 18.0 188 11-214 19-236 (337)
32 PLN02772 guanylate kinase 99.2 1.4E-10 2.9E-15 101.5 10.2 88 12-109 22-109 (398)
33 PF13964 Kelch_6: Kelch motif 99.2 8E-11 1.7E-15 73.2 6.2 50 72-128 1-50 (50)
34 PF03089 RAG2: Recombination a 99.2 5.1E-09 1.1E-13 85.9 17.3 168 85-279 40-230 (337)
35 PF13964 Kelch_6: Kelch motif 99.1 1.7E-10 3.7E-15 71.7 6.3 50 127-187 1-50 (50)
36 PLN02772 guanylate kinase 99.1 6E-10 1.3E-14 97.5 10.8 87 70-164 22-109 (398)
37 PF13415 Kelch_3: Galactose ox 99.1 4.5E-10 9.8E-15 69.4 5.5 47 84-136 2-49 (49)
38 PF13418 Kelch_4: Galactose ox 99.0 2.5E-10 5.4E-15 70.7 3.8 48 72-125 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 99.0 3.9E-10 8.5E-15 69.7 4.2 45 127-173 1-45 (49)
40 PF13415 Kelch_3: Galactose ox 99.0 1.1E-09 2.4E-14 67.7 6.1 47 138-194 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.9 4.7E-09 1E-13 64.8 5.4 45 14-65 1-47 (49)
42 PF13854 Kelch_5: Kelch motif 98.9 3.4E-09 7.4E-14 63.0 4.4 38 11-48 1-39 (42)
43 PF01344 Kelch_1: Kelch motif; 98.8 4.3E-09 9.3E-14 64.4 4.2 44 72-120 1-44 (47)
44 PF01344 Kelch_1: Kelch motif; 98.8 4.8E-09 1E-13 64.2 4.2 45 14-65 1-45 (47)
45 PF13854 Kelch_5: Kelch motif 98.8 1.3E-08 2.8E-13 60.5 5.1 40 69-109 1-41 (42)
46 PF07646 Kelch_2: Kelch motif; 98.8 2E-08 4.3E-13 61.9 5.7 44 72-120 1-46 (49)
47 smart00612 Kelch Kelch domain. 98.4 3.6E-07 7.8E-12 55.6 4.6 46 85-137 1-46 (47)
48 smart00612 Kelch Kelch domain. 98.3 1.4E-06 3.1E-11 52.8 4.4 45 140-195 1-45 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.2 0.00022 4.7E-09 59.3 16.7 140 56-222 54-197 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.0024 5.1E-08 53.1 10.3 92 100-208 46-139 (243)
51 TIGR01640 F_box_assoc_1 F-box 97.3 0.074 1.6E-06 44.1 19.6 153 41-221 14-175 (230)
52 PF12768 Rax2: Cortical protei 97.0 0.045 9.8E-07 46.7 14.5 117 89-220 3-121 (281)
53 PRK11138 outer membrane biogen 96.3 0.57 1.2E-05 42.3 17.9 155 19-224 64-225 (394)
54 PF12768 Rax2: Cortical protei 96.0 0.15 3.3E-06 43.6 11.8 106 142-277 2-110 (281)
55 PRK11138 outer membrane biogen 95.2 2.3 4.9E-05 38.4 20.9 122 15-172 111-232 (394)
56 TIGR01640 F_box_assoc_1 F-box 95.0 1.7 3.7E-05 35.9 14.6 143 3-164 81-229 (230)
57 PRK13684 Ycf48-like protein; P 94.9 2.6 5.5E-05 37.3 19.3 162 56-277 160-322 (334)
58 PF07893 DUF1668: Protein of u 94.8 1.8 3.9E-05 38.3 14.7 122 23-172 75-214 (342)
59 PF07893 DUF1668: Protein of u 93.8 4.1 8.9E-05 36.1 15.0 56 78-147 71-126 (342)
60 TIGR03300 assembly_YfgL outer 93.4 5.6 0.00012 35.5 16.9 114 18-172 59-172 (377)
61 PF13088 BNR_2: BNR repeat-lik 93.3 4.5 9.7E-05 34.3 14.7 159 80-273 115-275 (275)
62 PF13360 PQQ_2: PQQ-like domai 92.7 4.9 0.00011 33.0 19.9 109 79-224 32-142 (238)
63 PRK13684 Ycf48-like protein; P 92.5 7.2 0.00016 34.4 14.9 119 57-206 203-322 (334)
64 PF13360 PQQ_2: PQQ-like domai 92.0 6 0.00013 32.5 22.6 154 20-224 32-193 (238)
65 cd00216 PQQ_DH Dehydrogenases 91.8 11 0.00024 35.2 22.5 134 16-172 53-192 (488)
66 KOG2055 WD40 repeat protein [G 91.6 7.1 0.00015 35.3 13.0 109 83-222 224-333 (514)
67 KOG2055 WD40 repeat protein [G 91.4 9.4 0.0002 34.6 13.5 107 82-223 268-375 (514)
68 PF12217 End_beta_propel: Cata 91.0 8.6 0.00019 32.3 16.8 232 16-277 76-333 (367)
69 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.2 17 0.00036 34.4 18.1 119 79-224 66-191 (527)
70 PF08268 FBA_3: F-box associat 89.7 6.7 0.00015 29.1 11.7 74 138-221 5-78 (129)
71 PLN00033 photosystem II stabil 88.8 18 0.00039 32.8 20.6 161 2-206 120-300 (398)
72 PLN00033 photosystem II stabil 87.3 22 0.00049 32.2 20.4 111 116-275 272-388 (398)
73 PF14870 PSII_BNR: Photosynthe 87.3 19 0.00041 31.3 18.0 206 1-278 46-253 (302)
74 TIGR03300 assembly_YfgL outer 86.9 22 0.00048 31.7 21.2 117 20-172 101-217 (377)
75 PF14870 PSII_BNR: Photosynthe 86.1 22 0.00048 30.9 18.3 202 2-277 91-295 (302)
76 PF08268 FBA_3: F-box associat 84.7 14 0.0003 27.4 12.6 80 85-173 7-88 (129)
77 PF12217 End_beta_propel: Cata 83.9 25 0.00054 29.7 14.1 175 15-208 136-335 (367)
78 PF05096 Glu_cyclase_2: Glutam 83.8 26 0.00056 29.7 11.2 104 82-222 54-157 (264)
79 PF10282 Lactonase: Lactonase, 80.4 30 0.00066 30.5 11.2 75 75-163 195-275 (345)
80 cd00216 PQQ_DH Dehydrogenases 80.3 51 0.0011 30.8 16.7 121 79-224 58-185 (488)
81 KOG0310 Conserved WD40 repeat- 79.8 47 0.001 30.4 11.8 108 82-223 78-185 (487)
82 cd00094 HX Hemopexin-like repe 78.7 32 0.0007 27.6 14.6 114 76-222 54-175 (194)
83 COG4880 Secreted protein conta 75.0 36 0.00078 30.9 9.5 18 195-220 573-590 (603)
84 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.0 91 0.002 29.5 22.2 133 17-173 62-199 (527)
85 KOG0649 WD40 repeat protein [G 71.8 59 0.0013 27.3 10.2 85 115-223 100-187 (325)
86 PRK04792 tolB translocation pr 70.0 92 0.002 28.7 20.9 104 41-173 242-346 (448)
87 PRK11028 6-phosphogluconolacto 67.2 85 0.0018 27.3 14.7 69 85-172 3-73 (330)
88 PRK11028 6-phosphogluconolacto 66.5 87 0.0019 27.2 17.8 65 83-164 46-111 (330)
89 COG1520 FOG: WD40-like repeat 64.6 1E+02 0.0023 27.4 15.6 109 80-224 65-173 (370)
90 TIGR02800 propeller_TolB tol-p 64.4 1.1E+02 0.0024 27.5 19.7 110 82-222 244-354 (417)
91 PRK04043 tolB translocation pr 63.3 1.2E+02 0.0026 27.7 18.2 104 41-173 213-317 (419)
92 KOG4649 PQQ (pyrrolo-quinoline 60.4 1.1E+02 0.0023 26.1 10.4 68 133-224 16-83 (354)
93 PRK04792 tolB translocation pr 59.9 1.4E+02 0.0031 27.4 15.1 60 100-173 242-302 (448)
94 PF08450 SGL: SMP-30/Gluconola 59.0 1E+02 0.0022 25.4 11.8 110 83-222 11-123 (246)
95 PF13088 BNR_2: BNR repeat-lik 56.5 1.2E+02 0.0026 25.4 9.9 131 56-202 143-275 (275)
96 PF02191 OLF: Olfactomedin-lik 55.9 1.2E+02 0.0027 25.5 12.4 157 83-278 30-190 (250)
97 PF15525 DUF4652: Domain of un 54.6 86 0.0019 25.1 7.2 70 37-120 84-156 (200)
98 KOG2321 WD40 repeat protein [G 54.4 1.1E+02 0.0025 28.9 9.0 73 126-222 132-205 (703)
99 KOG2048 WD40 repeat protein [G 53.1 2.2E+02 0.0048 27.5 11.3 85 69-172 424-512 (691)
100 PRK00178 tolB translocation pr 52.4 1.8E+02 0.004 26.4 20.5 60 100-173 223-283 (430)
101 PF05096 Glu_cyclase_2: Glutam 52.1 1.5E+02 0.0032 25.2 12.7 104 24-164 55-158 (264)
102 KOG4649 PQQ (pyrrolo-quinoline 51.0 1.6E+02 0.0034 25.2 10.6 111 77-224 15-125 (354)
103 PRK03629 tolB translocation pr 50.8 2E+02 0.0043 26.3 15.6 75 82-173 253-327 (429)
104 PF15525 DUF4652: Domain of un 50.5 1.3E+02 0.0028 24.1 11.9 71 94-173 82-156 (200)
105 PF02897 Peptidase_S9_N: Proly 50.2 1.9E+02 0.0042 26.0 15.8 152 40-224 149-311 (414)
106 PF02897 Peptidase_S9_N: Proly 48.1 2.1E+02 0.0046 25.8 13.8 148 41-223 252-405 (414)
107 KOG0289 mRNA splicing factor [ 47.7 2.2E+02 0.0049 26.0 12.8 77 133-249 394-471 (506)
108 PF02239 Cytochrom_D1: Cytochr 47.1 2.1E+02 0.0046 25.6 12.2 116 76-222 39-158 (369)
109 KOG1645 RING-finger-containing 45.4 1.9E+02 0.0041 26.2 8.6 33 73-110 236-268 (463)
110 PRK00178 tolB translocation pr 44.4 2.5E+02 0.0053 25.5 20.8 60 100-173 267-327 (430)
111 cd00094 HX Hemopexin-like repe 43.1 1.7E+02 0.0037 23.3 12.4 66 77-164 103-176 (194)
112 COG2706 3-carboxymuconate cycl 42.7 2.4E+02 0.0052 25.0 14.5 152 41-222 167-323 (346)
113 PRK04922 tolB translocation pr 42.0 2.7E+02 0.0059 25.4 20.2 61 100-173 272-332 (433)
114 PRK04043 tolB translocation pr 41.7 2.8E+02 0.006 25.4 11.0 52 156-222 214-265 (419)
115 COG1520 FOG: WD40-like repeat 40.6 2.6E+02 0.0057 24.8 18.3 155 21-224 65-219 (370)
116 KOG2321 WD40 repeat protein [G 39.5 3.5E+02 0.0076 25.9 10.7 73 71-164 132-206 (703)
117 TIGR03866 PQQ_ABC_repeats PQQ- 39.3 2.2E+02 0.0048 23.6 19.3 63 82-164 83-146 (300)
118 PF13540 RCC1_2: Regulator of 37.8 58 0.0012 17.1 2.9 18 74-91 8-25 (30)
119 TIGR02658 TTQ_MADH_Hv methylam 36.9 3.1E+02 0.0067 24.5 15.0 118 25-169 13-140 (352)
120 KOG0282 mRNA splicing factor [ 36.4 1.9E+02 0.0041 26.7 7.4 40 197-249 311-350 (503)
121 PF10282 Lactonase: Lactonase, 36.3 3E+02 0.0065 24.2 15.8 84 73-173 144-232 (345)
122 PF14583 Pectate_lyase22: Olig 35.0 3.5E+02 0.0075 24.5 13.0 67 24-110 46-112 (386)
123 PRK05137 tolB translocation pr 34.6 3.6E+02 0.0078 24.6 19.6 60 100-173 226-286 (435)
124 PRK04922 tolB translocation pr 33.2 3.8E+02 0.0082 24.5 20.0 60 100-173 228-288 (433)
125 TIGR03866 PQQ_ABC_repeats PQQ- 30.8 3.1E+02 0.0067 22.7 19.3 62 82-164 41-104 (300)
126 TIGR03074 PQQ_membr_DH membran 30.8 5.7E+02 0.012 25.7 20.6 40 132-173 311-354 (764)
127 COG4946 Uncharacterized protei 30.7 4.5E+02 0.0098 24.6 13.3 65 98-172 105-170 (668)
128 PF14583 Pectate_lyase22: Olig 30.6 4.1E+02 0.009 24.1 8.7 79 74-172 37-117 (386)
129 KOG0268 Sof1-like rRNA process 28.9 2.7E+02 0.0058 24.9 6.9 28 255-282 312-339 (433)
130 PF14830 Haemocyan_bet_s: Haem 28.4 52 0.0011 23.5 2.1 27 196-222 35-61 (103)
131 COG4257 Vgb Streptogramin lyas 28.2 3E+02 0.0064 23.8 6.8 79 101-202 255-333 (353)
132 smart00155 PLDc Phospholipase 27.6 96 0.0021 15.8 3.0 22 187-208 3-24 (28)
133 KOG0308 Conserved WD40 repeat- 26.0 2.9E+02 0.0062 26.8 7.0 71 82-164 128-202 (735)
134 smart00564 PQQ beta-propeller 25.7 1.1E+02 0.0024 15.8 4.2 16 155-170 16-31 (33)
135 PRK05137 tolB translocation pr 25.6 5.2E+02 0.011 23.6 19.2 105 41-173 226-330 (435)
136 COG4447 Uncharacterized protei 23.9 3.1E+02 0.0068 23.7 6.2 154 4-204 34-188 (339)
137 KOG0318 WD40 repeat stress pro 23.7 6.3E+02 0.014 23.9 10.2 117 73-223 443-561 (603)
138 KOG0316 Conserved WD40 repeat- 23.3 4.6E+02 0.0099 22.1 8.3 63 139-224 113-175 (307)
139 TIGR03074 PQQ_membr_DH membran 22.8 7.9E+02 0.017 24.7 18.3 34 77-120 189-222 (764)
140 PF08450 SGL: SMP-30/Gluconola 22.6 4.3E+02 0.0094 21.6 19.1 108 24-164 11-124 (246)
141 KOG0646 WD40 repeat protein [G 21.8 6.4E+02 0.014 23.3 14.2 33 184-222 215-247 (476)
142 COG4880 Secreted protein conta 21.6 6.5E+02 0.014 23.3 12.7 124 16-164 378-504 (603)
143 TIGR02608 delta_60_rpt delta-6 21.6 1.4E+02 0.003 18.6 2.9 33 131-163 4-37 (55)
144 PF02191 OLF: Olfactomedin-lik 20.6 5.2E+02 0.011 21.8 14.9 165 12-204 66-237 (250)
145 PRK02889 tolB translocation pr 20.4 6.6E+02 0.014 22.9 18.8 187 41-304 176-362 (427)
146 KOG2048 WD40 repeat protein [G 20.1 8.2E+02 0.018 23.9 14.1 113 83-224 393-507 (691)
No 1
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2e-39 Score=273.25 Aligned_cols=258 Identities=25% Similarity=0.422 Sum_probs=214.9
Q ss_pred CCCCCCcceeEEEEC--CEEEEEccccCCCC---CcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCC
Q 021952 10 GIPSGRFGHTCVVIG--DCLVLFGGINDRGN---RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNR 84 (305)
Q Consensus 10 ~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~---~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 84 (305)
.+|.||.+.++++.- +.|++|||...+++ ..+|+|+|++ .+++|+++..++ .|+||+.|.++++..+
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~-------k~~eWkk~~spn-~P~pRsshq~va~~s~ 133 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT-------KKNEWKKVVSPN-APPPRSSHQAVAVPSN 133 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec-------cccceeEeccCC-CcCCCccceeEEeccC
Confidence 368899999998773 45999999866554 5689999999 899999998775 8999999999999877
Q ss_pred EEEEEecc--CCCCC---ccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCC---Ccccce
Q 021952 85 KMVIHAGI--GLYGL---RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVG---YEVLND 156 (305)
Q Consensus 85 ~lyv~GG~--~~~~~---~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~---~~~~~~ 156 (305)
.+|+|||. +++.. ...|+|+||+.++ +|+++..+..|+||++|-|++. +++++||||+... ..++||
T Consensus 134 ~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr----kweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyND 208 (521)
T KOG1230|consen 134 ILWLFGGEFASPNQEQFHHYKDLWLFDLKTR----KWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYND 208 (521)
T ss_pred eEEEeccccCCcchhhhhhhhheeeeeeccc----hheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceEEeee
Confidence 99999995 33332 2689999999999 9999997789999999999999 4899999999433 447899
Q ss_pred eEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCC--------CCCccCcEEEEecCCCCccc
Q 021952 157 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTS 228 (305)
Q Consensus 157 ~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~~~~~d~~~~~~~~ 228 (305)
+|+||+++ -+|++++ +++..|.||.+|+..+.-++.|||+||++. .+...+|+|.+++++....
T Consensus 209 vy~FdLdt--ykW~Kle-----psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~d- 280 (521)
T KOG1230|consen 209 VYAFDLDT--YKWSKLE-----PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGRED- 280 (521)
T ss_pred eEEEeccc--eeeeecc-----CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCc-
Confidence 99999999 9999997 567789999999988856999999999953 2445689999999854321
Q ss_pred cccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCCCcccCCCccccccCceeeEeee
Q 021952 229 VQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 302 (305)
Q Consensus 229 ~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 302 (305)
+..|++++..|..|.||+++++++.. +++-|.|||.-+-+-. .+....+|.+|+|.|++.
T Consensus 281 ------------Kw~W~kvkp~g~kPspRsgfsv~va~-n~kal~FGGV~D~eee-eEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 281 ------------KWVWTKVKPSGVKPSPRSGFSVAVAK-NHKALFFGGVCDLEEE-EESLSGEFFNDLYFFDLT 340 (521)
T ss_pred ------------ceeEeeccCCCCCCCCCCceeEEEec-CCceEEecceeccccc-chhhhhhhhhhhhheecc
Confidence 68899999999999999999998875 5589999998663322 234444789999999975
No 2
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=258.94 Aligned_cols=263 Identities=27% Similarity=0.440 Sum_probs=219.6
Q ss_pred cceEecCC------------CCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCC
Q 021952 2 LKWQKVNS------------GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIA 69 (305)
Q Consensus 2 ~~W~~~~~------------~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 69 (305)
+||.|++. ..|-.|.+|+.+.+.+++||.||+++....-+-+|+||+ ++.+|.+....+..
T Consensus 54 ~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp-------~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 54 YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDP-------ETNVWKKPEVEGFV 126 (392)
T ss_pred eeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecc-------ccccccccceeeec
Confidence 58999752 135589999999999999999999987667788999999 89999999999999
Q ss_pred CCCCCCceeEEecCCEEEEEeccCCC-CCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEccc
Q 021952 70 PPARGAHAACCIDNRKMVIHAGIGLY-GLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGR 147 (305)
Q Consensus 70 p~~r~~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~ 147 (305)
|.+|.+|++|+.++ .+|+|||+..+ ...++|++.+|.+|- +|+.+. .+.+|.-|-.|++++++ +.||||||+
T Consensus 127 PgaRDGHsAcV~gn-~MyiFGGye~~a~~FS~d~h~ld~~Tm----tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR 200 (392)
T KOG4693|consen 127 PGARDGHSACVWGN-QMYIFGGYEEDAQRFSQDTHVLDFATM----TWREMHTKGDPPRWRDFHTASVID-GMMYIFGGR 200 (392)
T ss_pred CCccCCceeeEECc-EEEEecChHHHHHhhhccceeEeccce----eeeehhccCCCchhhhhhhhhhcc-ceEEEeccc
Confidence 99999999999998 99999997433 356889999999996 999998 67788889999999995 899999999
Q ss_pred CCCCc--------ccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCC-CccCcEEE
Q 021952 148 GVGYE--------VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-RRKDDFWV 218 (305)
Q Consensus 148 ~~~~~--------~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~ 218 (305)
.+... +.+.+..||+.+ ..|.+.+ .....|..|..|++.+ .++++|+|||+.+-. .-.+|+|.
T Consensus 201 ~D~~gpfHs~~e~Yc~~i~~ld~~T--~aW~r~p-----~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy~ 272 (392)
T KOG4693|consen 201 SDESGPFHSIHEQYCDTIMALDLAT--GAWTRTP-----ENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLYC 272 (392)
T ss_pred cccCCCccchhhhhcceeEEEeccc--cccccCC-----CCCcCCCcccccceEE-EcceEEEecccchhhhhhhcceee
Confidence 54322 456788999999 9999985 5667899999999988 899999999997642 34789999
Q ss_pred EecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCC---Cccc------CCCcc
Q 021952 219 LDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG---LVQP------ADTSG 289 (305)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~---~~~~------~~~~~ 289 (305)
||+. +..|+.+...|..|.+|.-+++++ .++++|+|||.+.- ..+. .+...
T Consensus 273 FdP~------------------t~~W~~I~~~Gk~P~aRRRqC~~v--~g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~ 332 (392)
T KOG4693|consen 273 FDPK------------------TSMWSVISVRGKYPSARRRQCSVV--SGGKVYLFGGTSPLPCHPLSPTNYNGMISPSG 332 (392)
T ss_pred cccc------------------cchheeeeccCCCCCcccceeEEE--ECCEEEEecCCCCCCCCCCCccccCCCCCccc
Confidence 9999 889999999999999999888876 67899999998541 1111 12233
Q ss_pred ccccCceeeEeeeecC
Q 021952 290 LRFDGRLLLVELVPLL 305 (305)
Q Consensus 290 ~~~~~d~~~~~~~~~~ 305 (305)
+--.+|++.+|++|+|
T Consensus 333 LiD~SDLHvLDF~PsL 348 (392)
T KOG4693|consen 333 LIDLSDLHVLDFAPSL 348 (392)
T ss_pred ccccccceeeecChhH
Confidence 4446899999999975
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-37 Score=274.42 Aligned_cols=258 Identities=22% Similarity=0.337 Sum_probs=197.1
Q ss_pred cceEecCC---CCCCCCcceeEEEECCEEEEEccccCC-CCCcccceeecccccccccccceEEecccCCCCCCC-CCCc
Q 021952 2 LKWQKVNS---GIPSGRFGHTCVVIGDCLVLFGGINDR-GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-RGAH 76 (305)
Q Consensus 2 ~~W~~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~-r~~~ 76 (305)
-+|.++.. ..|.||.+|++++++++|||+||.... ....+++|+||+ .+++|+++...+..|.. +.+|
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~-------~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDF-------NTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEEC-------CCCEEEEcCccCCCCCCccCce
Confidence 37999963 368999999999999999999998643 334579999999 78999998765433433 4478
Q ss_pred eeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEccc---CCCCCccCCCeeEEEeCCEEEEEcccCCCC--
Q 021952 77 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT---HPSPPARSGHSLTRIGGNRTVLFGGRGVGY-- 151 (305)
Q Consensus 77 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-- 151 (305)
+++++++ +||++||.... ..++++++||+.++ +|+.++. ...|.+|..|++++. +++|||+||.....
T Consensus 80 ~~~~~~~-~iyv~GG~~~~-~~~~~v~~yd~~t~----~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~ 152 (341)
T PLN02153 80 RMVAVGT-KLYIFGGRDEK-REFSDFYSYDTVKN----EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLM 152 (341)
T ss_pred EEEEECC-EEEEECCCCCC-CccCcEEEEECCCC----EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCcc
Confidence 8888887 99999998544 35789999999999 9999871 123789999999888 58999999985321
Q ss_pred ---cccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCC-------CCccCcEEEEec
Q 021952 152 ---EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-------RRRKDDFWVLDT 221 (305)
Q Consensus 152 ---~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------~~~~~~~~~~d~ 221 (305)
..++++++||+.+ ++|+.++ .....|.+|.+|++++ .+++|||+||.... ....+++++||+
T Consensus 153 ~~~~~~~~v~~yd~~~--~~W~~l~-----~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 153 KTPERFRTIEAYNIAD--GKWVQLP-----DPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred CCCcccceEEEEECCC--CeEeeCC-----CCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 2457899999999 9999985 2233457899998876 78999999997521 122578999998
Q ss_pred CCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCCCcccCCCccccccCceeeEee
Q 021952 222 KAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVEL 301 (305)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~d~~~~~~ 301 (305)
. +.+|+++...+.+|.+|..|+++++ +++||||||....+...+.. ...+.+|+|+||+
T Consensus 225 ~------------------~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~-~~~~~n~v~~~d~ 283 (341)
T PLN02153 225 A------------------SGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPDLKGHLG-PGTLSNEGYALDT 283 (341)
T ss_pred C------------------CCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCccccccc-cccccccEEEEEc
Confidence 8 8899999877788999999998774 68999999985433211111 1234567777775
Q ss_pred e
Q 021952 302 V 302 (305)
Q Consensus 302 ~ 302 (305)
.
T Consensus 284 ~ 284 (341)
T PLN02153 284 E 284 (341)
T ss_pred C
Confidence 4
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.5e-37 Score=282.40 Aligned_cols=254 Identities=19% Similarity=0.309 Sum_probs=202.3
Q ss_pred ceEecCC--CCCCCCcceeEEEECCEEEEEccccCCC-CCcccceeecccccccccccceEEecccCCCCCC-CCCCcee
Q 021952 3 KWQKVNS--GIPSGRFGHTCVVIGDCLVLFGGINDRG-NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPP-ARGAHAA 78 (305)
Q Consensus 3 ~W~~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~-~r~~~~~ 78 (305)
+|.++.. ..|.||.+|++++++++|||+||..... ...+++|+||+ .+.+|+.++..+..|. .|.+|++
T Consensus 152 ~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~-------~~~~W~~~~~~g~~P~~~~~~~~~ 224 (470)
T PLN02193 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDL-------ETRTWSISPATGDVPHLSCLGVRM 224 (470)
T ss_pred eEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEEC-------CCCEEEeCCCCCCCCCCcccceEE
Confidence 6999863 3688999999999999999999986433 34578999999 8999998876654554 3568888
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCccccee
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV 157 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 157 (305)
+++++ +||++||.... ..++++|+||+.++ +|++++ .+..|.+|+.|+++.. +++|||+||.. .....+++
T Consensus 225 v~~~~-~lYvfGG~~~~-~~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~-~~~~~~~~ 296 (470)
T PLN02193 225 VSIGS-TLYVFGGRDAS-RQYNGFYSFDTTTN----EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVS-ATARLKTL 296 (470)
T ss_pred EEECC-EEEEECCCCCC-CCCccEEEEECCCC----EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCC-CCCCcceE
Confidence 88887 99999998543 45899999999999 999997 3344889999999888 58999999985 44567899
Q ss_pred EEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCcccccccccccc
Q 021952 158 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR 237 (305)
Q Consensus 158 ~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 237 (305)
++||+.+ ++|+.+. .....|.+|..|++++ .++++||+||.+.. ..+++++||+.
T Consensus 297 ~~yd~~t--~~W~~~~-----~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~--~~~dv~~yD~~--------------- 351 (470)
T PLN02193 297 DSYNIVD--KKWFHCS-----TPGDSFSIRGGAGLEV-VQGKVWVVYGFNGC--EVDDVHYYDPV--------------- 351 (470)
T ss_pred EEEECCC--CEEEeCC-----CCCCCCCCCCCcEEEE-ECCcEEEEECCCCC--ccCceEEEECC---------------
Confidence 9999999 9999985 3345678899998876 68999999998643 36899999998
Q ss_pred ccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCCCcccCCCccccccCceeeEeee
Q 021952 238 GLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 302 (305)
Q Consensus 238 ~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 302 (305)
+++|+++...+..|.+|..|+++++ +++||||||....+...+... ..+.+|+|.||+.
T Consensus 352 ---t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~-~~~~ndv~~~D~~ 410 (470)
T PLN02193 352 ---QDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGP-GQLTDGTFALDTE 410 (470)
T ss_pred ---CCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCc-cceeccEEEEEcC
Confidence 8899999887778999999998764 689999999865322111111 1355677887764
No 5
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=275.61 Aligned_cols=230 Identities=30% Similarity=0.515 Sum_probs=206.2
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCCCCcc-cceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEE
Q 021952 10 GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHN-DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVI 88 (305)
Q Consensus 10 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv 88 (305)
..|.+|.+|+++.+++++|||||......... |+|++|+ .+..|......+..|.+|.+|+++++++ +||+
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~-------~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~l 127 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDL-------ESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYL 127 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeec-------CCcccccccccCCCCCcccceeEEEECC-eEEE
Confidence 46889999999999999999999976544333 6999999 7899999999999999999999999997 9999
Q ss_pred EeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccce
Q 021952 89 HAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFF 167 (305)
Q Consensus 89 ~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~ 167 (305)
|||.......+++++.||+.++ +|..+. .+.+|++|.+|+++.++ +++|||||.+......|++|+||+++ .
T Consensus 128 fGG~~~~~~~~~~l~~~d~~t~----~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~--~ 200 (482)
T KOG0379|consen 128 FGGTDKKYRNLNELHSLDLSTR----TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLET--S 200 (482)
T ss_pred EccccCCCCChhheEeccCCCC----cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeecccc--c
Confidence 9998654456899999999999 999999 66779999999999995 89999999986666999999999999 9
Q ss_pred eEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceee
Q 021952 168 KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRL 247 (305)
Q Consensus 168 ~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v 247 (305)
+|.++. ..+..|.||.+|++++ .+++++|+||......+++|+|.||+. +..|+++
T Consensus 201 ~W~~~~-----~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~------------------~~~W~~~ 256 (482)
T KOG0379|consen 201 TWSELD-----TQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGDVYLNDVHILDLS------------------TWEWKLL 256 (482)
T ss_pred cceecc-----cCCCCCCCCCCceEEE-ECCeEEEEeccccCCceecceEeeecc------------------cceeeec
Confidence 999997 7788999999999987 799999999998667889999999999 8899998
Q ss_pred cccCcCCCCCceeeeeeeCCCcEEEEEcCccCC
Q 021952 248 RAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG 280 (305)
Q Consensus 248 ~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 280 (305)
...+..|.+|++|+++. .+++++|+||....
T Consensus 257 ~~~g~~p~~R~~h~~~~--~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 257 PTGGDLPSPRSGHSLTV--SGDHLLLFGGGTDP 287 (482)
T ss_pred cccCCCCCCcceeeeEE--ECCEEEEEcCCccc
Confidence 88899999999999984 67899999999765
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.7e-35 Score=261.07 Aligned_cols=252 Identities=19% Similarity=0.312 Sum_probs=192.9
Q ss_pred ceEecCCCCCCC---CcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCC--CCCCCCCCce
Q 021952 3 KWQKVNSGIPSG---RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS--IAPPARGAHA 77 (305)
Q Consensus 3 ~W~~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~p~~r~~~~ 77 (305)
+|++++...+.| +.+|++++++++||+|||.... ...+++++||+ .+++|+.++... ..|.+|..|+
T Consensus 61 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~-------~t~~W~~~~~~~~~~~p~~R~~~~ 132 (341)
T PLN02153 61 TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDT-------VKNEWTFLTKLDEEGGPEARTFHS 132 (341)
T ss_pred EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEEC-------CCCEEEEeccCCCCCCCCCceeeE
Confidence 699886433233 4488999999999999998653 34789999999 799999887532 2378899999
Q ss_pred eEEecCCEEEEEeccCCCC-----CccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCC-
Q 021952 78 ACCIDNRKMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG- 150 (305)
Q Consensus 78 ~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~- 150 (305)
+++.++ +|||+||.+..+ ..++++++||+.++ +|+.++ .+..|.+|.+|+++++ +++|||+||....
T Consensus 133 ~~~~~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~----~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~ 206 (341)
T PLN02153 133 MASDEN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG----KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSI 206 (341)
T ss_pred EEEECC-EEEEECCccCCCccCCCcccceEEEEECCCC----eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEecccccc
Confidence 998887 999999985432 24678999999999 999998 3345678999999888 5899999986421
Q ss_pred ------CcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCC--------CCCccCcE
Q 021952 151 ------YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDF 216 (305)
Q Consensus 151 ------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~~ 216 (305)
....+++++||+.+ ++|+++. ..+.+|.+|..|++++ .+++|||+||... .+...+++
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~--~~W~~~~-----~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v 278 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPAS--GKWTEVE-----TTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEG 278 (341)
T ss_pred ccCCccceecCceEEEEcCC--CcEEecc-----ccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccE
Confidence 12357899999999 9999995 3356789999998876 7899999999742 23346799
Q ss_pred EEEecCCCCccccccccccccccccccceeecccCc--CCCCCceeeeeeeCCCcEEEEEcCccCCCcccCCCccccccC
Q 021952 217 WVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY--KPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDG 294 (305)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~--~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 294 (305)
|+||+. +.+|+++...+. +|..|..++++.+..+++|||+||..... +-.+
T Consensus 279 ~~~d~~------------------~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~---------~~~~ 331 (341)
T PLN02153 279 YALDTE------------------TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN---------ERTD 331 (341)
T ss_pred EEEEcC------------------ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC---------cccc
Confidence 999998 889998875433 45555555666665566999999996552 1237
Q ss_pred ceeeEeeee
Q 021952 295 RLLLVELVP 303 (305)
Q Consensus 295 d~~~~~~~~ 303 (305)
|+|+|++..
T Consensus 332 ~~~~~~~~~ 340 (341)
T PLN02153 332 DLYFYAVNS 340 (341)
T ss_pred ceEEEeccc
Confidence 888888753
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-35 Score=270.81 Aligned_cols=249 Identities=21% Similarity=0.331 Sum_probs=198.7
Q ss_pred ceEecCC--CCCC-CCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeE
Q 021952 3 KWQKVNS--GIPS-GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAAC 79 (305)
Q Consensus 3 ~W~~~~~--~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~ 79 (305)
+|++++. ..|. +|.+|++++++++||||||.... ..++++|+||+ .+++|+++...+..|.+|..|+++
T Consensus 204 ~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~-------~t~~W~~l~~~~~~P~~R~~h~~~ 275 (470)
T PLN02193 204 TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDT-------TTNEWKLLTPVEEGPTPRSFHSMA 275 (470)
T ss_pred EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEEC-------CCCEEEEcCcCCCCCCCccceEEE
Confidence 6998763 2344 46799999999999999998753 45789999999 899999998766568899999999
Q ss_pred EecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeE
Q 021952 80 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 158 (305)
Q Consensus 80 ~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 158 (305)
+.++ +||++||.... ..++++++||+.++ +|+.++ .+..|.+|.+|+++++ ++++|++||... ...++++
T Consensus 276 ~~~~-~iYv~GG~~~~-~~~~~~~~yd~~t~----~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g--~~~~dv~ 346 (470)
T PLN02193 276 ADEE-NVYVFGGVSAT-ARLKTLDSYNIVDK----KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNG--CEVDDVH 346 (470)
T ss_pred EECC-EEEEECCCCCC-CCcceEEEEECCCC----EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCC--CccCceE
Confidence 8876 99999998543 35789999999999 999988 4456789999999998 589999999742 3468999
Q ss_pred EEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCC--------CCCccCcEEEEecCCCCccccc
Q 021952 159 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQ 230 (305)
Q Consensus 159 ~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~~~~~d~~~~~~~~~~ 230 (305)
+||+.+ ++|+++. ..+..|.+|..|++++ .+++|||+||... .....+++|+||+.
T Consensus 347 ~yD~~t--~~W~~~~-----~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~-------- 410 (470)
T PLN02193 347 YYDPVQ--DKWTQVE-----TFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE-------- 410 (470)
T ss_pred EEECCC--CEEEEec-----cCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcC--------
Confidence 999999 9999995 3345688999998876 7899999999853 12356789999998
Q ss_pred cccccccccccccceeecccC---cCCCCCceeeee--eeCCCcEEEEEcCccCCCcccCCCccccccCceeeEeeee
Q 021952 231 QSMLDSRGLLLNMWKRLRAEG---YKPNCRSFHRAC--PDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 303 (305)
Q Consensus 231 ~~~~~~~~~~~~~W~~v~~~~---~~p~~r~~~~~~--~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 303 (305)
+.+|+++...+ ..|.+|..|+++ .+..++.|++|||..... ...+|+|+|++..
T Consensus 411 ----------t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~---------~~~~D~~~~~~~~ 469 (470)
T PLN02193 411 ----------TLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTN---------DRFDDLFFYGIDS 469 (470)
T ss_pred ----------cCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcc---------ccccceEEEecCC
Confidence 88999987543 468888777543 222335699999996543 3448999998754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=262.36 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=187.2
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEec
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 82 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (305)
+|.+++ ..|.+|.++++++++++||++||........+++++||+ .+++|..++. +|.+|..+++++++
T Consensus 283 ~W~~l~-~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~-------~~n~W~~~~~---m~~~R~~~~~~~~~ 351 (557)
T PHA02713 283 EYSVIS-TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINI-------ENKIHVELPP---MIKNRCRFSLAVID 351 (557)
T ss_pred eEEECC-CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEEC-------CCCeEeeCCC---CcchhhceeEEEEC
Confidence 688887 578899999999999999999998644445788999999 7899998774 67899999999998
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCC-----------
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY----------- 151 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----------- 151 (305)
+ +||++||.... ..++++++||+.++ +|+.++ ++|.+|..|++++. +++||++||.....
T Consensus 352 g-~IYviGG~~~~-~~~~sve~Ydp~~~----~W~~~~--~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 352 D-TIYAIGGQNGT-NVERTIECYTMGDD----KWKMLP--DMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred C-EEEEECCcCCC-CCCceEEEEECCCC----eEEECC--CCCcccccccEEEE-CCEEEEEeCCCcccccccccccccc
Confidence 7 99999997433 35788999999999 999998 89999999999988 58999999985321
Q ss_pred ------cccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCC
Q 021952 152 ------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIP 225 (305)
Q Consensus 152 ------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~ 225 (305)
...+.+++||+++ ++|+.+ .+++.+|..+++++ .+++|||+||.+......+.+++||+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~t--d~W~~v--------~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~--- 488 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVN--NIWETL--------PNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTN--- 488 (557)
T ss_pred cccccccccceEEEECCCC--CeEeec--------CCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCC---
Confidence 1357899999999 999999 48899999988876 799999999987543334557888887
Q ss_pred cccccccccccccccc-ccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccC
Q 021952 226 FTSVQQSMLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 226 ~~~~~~~~~~~~~~~~-~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 279 (305)
+ ++|+.+.. +|.+|..++++++ +++||++||...
T Consensus 489 ---------------~~~~W~~~~~---m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 489 ---------------TYNGWELITT---TESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ---------------CCCCeeEccc---cCcccccceeEEE--CCEEEEEeeecc
Confidence 7 79998865 9999999888874 689999999754
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.1e-32 Score=241.42 Aligned_cols=236 Identities=17% Similarity=0.271 Sum_probs=176.8
Q ss_pred cceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEE-ecccCCCCCCCCCCceeEE
Q 021952 2 LKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWR-LLDVGSIAPPARGAHAACC 80 (305)
Q Consensus 2 ~~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~ 80 (305)
++|.++. .+|.+|..++++.++++||++||... ...++++|+||+ .+.+|. .......+|.+|..|++++
T Consensus 51 ~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~-~~~~~~v~~~d~-------~~~~w~~~~~~~~~lp~~~~~~~~~~ 121 (323)
T TIGR03548 51 LKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNS-SERFSSVYRITL-------DESKEELICETIGNLPFTFENGSACY 121 (323)
T ss_pred eeEEEcc-cCCccccceEEEEECCEEEEEcCCCC-CCCceeEEEEEE-------cCCceeeeeeEcCCCCcCccCceEEE
Confidence 3698886 57889988888999999999999865 344789999999 677772 1122234788899999998
Q ss_pred ecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCC-CccCCCeeEEEeCCEEEEEcccCCCCcccceeEE
Q 021952 81 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWF 159 (305)
Q Consensus 81 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 159 (305)
+++ +||++||.. .+..++++++||+.++ +|++++ ++| .+|..|+++.+ +++|||+||... ...+++++
T Consensus 122 ~~~-~iYv~GG~~-~~~~~~~v~~yd~~~~----~W~~~~--~~p~~~r~~~~~~~~-~~~iYv~GG~~~--~~~~~~~~ 190 (323)
T TIGR03548 122 KDG-TLYVGGGNR-NGKPSNKSYLFNLETQ----EWFELP--DFPGEPRVQPVCVKL-QNELYVFGGGSN--IAYTDGYK 190 (323)
T ss_pred ECC-EEEEEeCcC-CCccCceEEEEcCCCC----CeeECC--CCCCCCCCcceEEEE-CCEEEEEcCCCC--ccccceEE
Confidence 887 999999973 3345789999999999 999997 555 47888888888 589999999853 23467899
Q ss_pred EEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCC-----------------------------
Q 021952 160 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR----------------------------- 210 (305)
Q Consensus 160 ~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~----------------------------- 210 (305)
||+++ ++|+.+... .....|..+..++++++.+++|||+||.+...
T Consensus 191 yd~~~--~~W~~~~~~---~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 191 YSPKK--NQWQKVADP---TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred EecCC--CeeEECCCC---CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 99999 999998510 01124445555655555789999999986421
Q ss_pred --CccCcEEEEecCCCCccccccccccccccccccceeecccCcCC-CCCceeeeeeeCCCcEEEEEcCccCCCcccC
Q 021952 211 --RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKP-NCRSFHRACPDYSGRYLYVFGGMVDGLVQPA 285 (305)
Q Consensus 211 --~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p-~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~ 285 (305)
.+.+++++||+. +++|+.+.. +| .+|..++++. .+++||++||...+.++..
T Consensus 266 ~~~~~~~v~~yd~~------------------~~~W~~~~~---~p~~~r~~~~~~~--~~~~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 266 WYNWNRKILIYNVR------------------TGKWKSIGN---SPFFARCGAALLL--TGNNIFSINGELKPGVRTP 320 (323)
T ss_pred ccCcCceEEEEECC------------------CCeeeEccc---ccccccCchheEE--ECCEEEEEeccccCCcCCc
Confidence 112457777776 889998864 54 5788887766 4689999999977765443
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=226.00 Aligned_cols=238 Identities=23% Similarity=0.347 Sum_probs=195.6
Q ss_pred CcceEecCCCCCCCCcceeEEEECCEEEEEccccCCCC----CcccceeecccccccccccceEEecccC----------
Q 021952 1 MLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGN----RHNDTWIGQIACHENLGITLSWRLLDVG---------- 66 (305)
Q Consensus 1 ~~~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~~~~---------- 66 (305)
|++|.--= .--+.|.+|+++.++.+||-|||+..... .--|+.+++. .+.+|+++++.
T Consensus 1 m~~WTVHL-eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa-------~~~RWtk~pp~~~ka~i~~~y 72 (392)
T KOG4693|consen 1 MATWTVHL-EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNA-------ENYRWTKMPPGITKATIESPY 72 (392)
T ss_pred CceEEEEe-cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeec-------cceeEEecCcccccccccCCC
Confidence 57887752 23457899999999999999999965321 1235666776 89999998851
Q ss_pred CCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEc
Q 021952 67 SIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFG 145 (305)
Q Consensus 67 ~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~G 145 (305)
...|-.|++|+.+.+.+ ++|+.||...+...-|-+|.||++++ +|.+.. .+-.|..|-+|++++++ +.|||||
T Consensus 73 p~VPyqRYGHtvV~y~d-~~yvWGGRND~egaCN~Ly~fDp~t~----~W~~p~v~G~vPgaRDGHsAcV~g-n~MyiFG 146 (392)
T KOG4693|consen 73 PAVPYQRYGHTVVEYQD-KAYVWGGRNDDEGACNLLYEFDPETN----VWKKPEVEGFVPGARDGHSACVWG-NQMYIFG 146 (392)
T ss_pred CccchhhcCceEEEEcc-eEEEEcCccCcccccceeeeeccccc----cccccceeeecCCccCCceeeEEC-cEEEEec
Confidence 12355699999999998 99999998765556788999999999 999998 88899999999999994 8999999
Q ss_pred ccCCC-CcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCC--------CCccCcE
Q 021952 146 GRGVG-YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDF 216 (305)
Q Consensus 146 G~~~~-~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~ 216 (305)
|+... +.+.++++++|+.+ .+|+.+. +.+..|.=|..|++.+ .++.+|||||.... ..+.+.+
T Consensus 147 Gye~~a~~FS~d~h~ld~~T--mtWr~~~-----Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i 218 (392)
T KOG4693|consen 147 GYEEDAQRFSQDTHVLDFAT--MTWREMH-----TKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTI 218 (392)
T ss_pred ChHHHHHhhhccceeEeccc--eeeeehh-----ccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhccee
Confidence 99544 45778999999999 9999996 7778888889999987 67999999999543 2345678
Q ss_pred EEEecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCC
Q 021952 217 WVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG 280 (305)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 280 (305)
-.+|+. ++.|.+....+..|..|..|++.+ .++++|+|||....
T Consensus 219 ~~ld~~------------------T~aW~r~p~~~~~P~GRRSHS~fv--Yng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 219 MALDLA------------------TGAWTRTPENTMKPGGRRSHSTFV--YNGKMYMFGGYNGT 262 (392)
T ss_pred EEEecc------------------ccccccCCCCCcCCCcccccceEE--EcceEEEecccchh
Confidence 889988 889999988888999999999866 56899999999543
No 11
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.5e-33 Score=252.14 Aligned_cols=236 Identities=32% Similarity=0.584 Sum_probs=205.4
Q ss_pred ceEecC--CCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEE
Q 021952 3 KWQKVN--SGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACC 80 (305)
Q Consensus 3 ~W~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~ 80 (305)
.|.+.. +..|.+|.+|+++.++++||+|||........++++.||+ .+.+|+.+...+.+|++|.+|++++
T Consensus 99 ~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~-------~t~~W~~l~~~~~~P~~r~~Hs~~~ 171 (482)
T KOG0379|consen 99 LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDL-------STRTWSLLSPTGDPPPPRAGHSATV 171 (482)
T ss_pred ccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccC-------CCCcEEEecCcCCCCCCcccceEEE
Confidence 455553 4568999999999999999999999865566889999999 8999999999998899999999999
Q ss_pred ecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEE
Q 021952 81 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWF 159 (305)
Q Consensus 81 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 159 (305)
+++ ++|||||.+..+...+++|+||+.+. +|.++. .+..|.||.+|+++.++ ++++||||.+....+++|+|.
T Consensus 172 ~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~----~W~~~~~~g~~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~~~ 245 (482)
T KOG0379|consen 172 VGT-KLVVFGGIGGTGDSLNDLHIYDLETS----TWSELDTQGEAPSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDVHI 245 (482)
T ss_pred ECC-EEEEECCccCcccceeeeeeeccccc----cceecccCCCCCCCCCCceEEEEC-CeEEEEeccccCCceecceEe
Confidence 996 99999999777668999999999998 999999 88999999999999995 799998888767789999999
Q ss_pred EEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC-ccCcEEEEecCCCCccccccccccccc
Q 021952 160 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR-RKDDFWVLDTKAIPFTSVQQSMLDSRG 238 (305)
Q Consensus 160 ~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 238 (305)
||+.+ .+|..+. ..+..|.+|++|+.++ .+++++|+||...+.. .+.++|.||.+
T Consensus 246 ldl~~--~~W~~~~-----~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~---------------- 301 (482)
T KOG0379|consen 246 LDLST--WEWKLLP-----TGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPKQEPLGDLYGLDLE---------------- 301 (482)
T ss_pred eeccc--ceeeecc-----ccCCCCCCcceeeeEE-ECCEEEEEcCCccccccccccccccccc----------------
Confidence 99999 9999775 6789999999999984 8999999999977644 58899999998
Q ss_pred cccccceeecccC-cCCCCCceeeeeeeCCC--cEEEEEcCc
Q 021952 239 LLLNMWKRLRAEG-YKPNCRSFHRACPDYSG--RYLYVFGGM 277 (305)
Q Consensus 239 ~~~~~W~~v~~~~-~~p~~r~~~~~~~~~~~--~~i~v~GG~ 277 (305)
+..|.++...+ ..|.+|..|.++..... ..+.++||.
T Consensus 302 --~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (482)
T KOG0379|consen 302 --TLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGN 341 (482)
T ss_pred --ccceeeeeccccccccccccccceeeccCCccceeeecCc
Confidence 88999998877 78899998888765443 355666664
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=255.40 Aligned_cols=213 Identities=19% Similarity=0.257 Sum_probs=178.8
Q ss_pred CcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCC
Q 021952 15 RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGL 94 (305)
Q Consensus 15 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~ 94 (305)
+..+++++++++||++||........+++++||+ .+++|.+++ .+|.+|..|+++++++ +||++||..
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~---~~~~~R~~~~~~~~~~-~lyv~GG~~- 352 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT-------KTKSWNKVP---ELIYPRKNPGVTVFNN-RIYVIGGIY- 352 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEEEEeC-------CCCeeeECC---CCCcccccceEEEECC-EEEEEeCCC-
Confidence 4456888999999999999766666789999999 899999876 3678999999998887 999999985
Q ss_pred CCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEecc
Q 021952 95 YGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPY 174 (305)
Q Consensus 95 ~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 174 (305)
.....+++++||+.++ +|+.++ ++|.+|++|+++.+ +++||++||.......++++++||+.+ ++|+.+.
T Consensus 353 ~~~~~~~v~~yd~~~~----~W~~~~--~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~- 422 (534)
T PHA03098 353 NSISLNTVESWKPGES----KWREEP--PLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNT--NKWSKGS- 422 (534)
T ss_pred CCEecceEEEEcCCCC----ceeeCC--CcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCC--CeeeecC-
Confidence 3346789999999999 999998 88899999999888 589999999755555678999999999 9999984
Q ss_pred ccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC--ccCcEEEEecCCCCccccccccccccccccccceeecccCc
Q 021952 175 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR--RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY 252 (305)
Q Consensus 175 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~ 252 (305)
++|.+|.+|+++. .+++|||+||.+.... ..+.+++||+. +++|+.+..
T Consensus 423 -------~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~------------------~~~W~~~~~--- 473 (534)
T PHA03098 423 -------PLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPV------------------TNKWTELSS--- 473 (534)
T ss_pred -------CCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCC------------------CCceeeCCC---
Confidence 7889999998876 7999999999864332 24568999988 889998865
Q ss_pred CCCCCceeeeeeeCCCcEEEEEcCccCC
Q 021952 253 KPNCRSFHRACPDYSGRYLYVFGGMVDG 280 (305)
Q Consensus 253 ~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 280 (305)
+|.+|..+++++. +++|||+||....
T Consensus 474 ~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 474 LNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCcccccceEEEE--CCEEEEEcCCcCC
Confidence 7778988888764 6899999998643
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=253.88 Aligned_cols=221 Identities=23% Similarity=0.353 Sum_probs=194.2
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEec
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 82 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (305)
.|..++ ..|.+|..++++++++.||++||.+.....++.+|+||+ .+++|+++++ +..+|..+++++++
T Consensus 312 ~w~~~a-~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~-------~~~~W~~~a~---M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 312 EWSSLA-PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDP-------RTNQWTPVAP---MNTKRSDFGVAVLD 380 (571)
T ss_pred cEeecC-CCCcccccccEEEECCEEEEEccccCCCcccceEEEecC-------CCCceeccCC---ccCccccceeEEEC
Confidence 488886 578999999999999999999999854556889999999 7999999774 66899999999999
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEc
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 162 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~ 162 (305)
+ +||++||.+.. ..++.+++||+.++ +|+.+. +++.+|++|++++. +++||++||.......++.+.+||+
T Consensus 381 g-~iYavGG~dg~-~~l~svE~YDp~~~----~W~~va--~m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 381 G-KLYAVGGFDGE-KSLNSVECYDPVTN----KWTPVA--PMLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred C-EEEEEeccccc-cccccEEEecCCCC----cccccC--CCCcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcC
Confidence 8 99999998643 56889999999999 999998 88889999999999 5899999998655558999999999
Q ss_pred cccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccc
Q 021952 163 YEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN 242 (305)
Q Consensus 163 ~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 242 (305)
.+ ++|+.+ .+++.+|.++.+++ .+++||++||++. ......+++||+. ++
T Consensus 452 ~t--~~W~~~--------~~M~~~R~~~g~a~-~~~~iYvvGG~~~-~~~~~~VE~ydp~------------------~~ 501 (571)
T KOG4441|consen 452 ET--NTWTLI--------APMNTRRSGFGVAV-LNGKIYVVGGFDG-TSALSSVERYDPE------------------TN 501 (571)
T ss_pred CC--Cceeec--------CCcccccccceEEE-ECCEEEEECCccC-CCccceEEEEcCC------------------CC
Confidence 99 999999 49999999998876 8999999999988 4456679999998 88
Q ss_pred cceeecccCcCCCCCceeeeeeeCCCcEEEEEcCcc
Q 021952 243 MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 278 (305)
Q Consensus 243 ~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 278 (305)
+|+.+.. ++.+|..+++++ .++++|++||..
T Consensus 502 ~W~~v~~---m~~~rs~~g~~~--~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 502 QWTMVAP---MTSPRSAVGVVV--LGGKLYAVGGFD 532 (571)
T ss_pred ceeEccc---CccccccccEEE--ECCEEEEEeccc
Confidence 9999955 888998888777 468999999963
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.4e-31 Score=235.29 Aligned_cols=227 Identities=19% Similarity=0.302 Sum_probs=168.1
Q ss_pred ceEecCCCCC-CCCcceeEEEECCEEEEEccccCCC-----CCcccceeecccccccccccceEEecccCCCCCCCCCCc
Q 021952 3 KWQKVNSGIP-SGRFGHTCVVIGDCLVLFGGINDRG-----NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAH 76 (305)
Q Consensus 3 ~W~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~ 76 (305)
+|++++ ..| .+|.+++++.++++||++||..... ..++++|+||+ .+++|+++.. ..|.+|.+|
T Consensus 42 ~W~~l~-~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~-------~~~~W~~~~~--~~p~~~~~~ 111 (346)
T TIGR03547 42 GWQKIA-DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDP-------KKNSWQKLDT--RSPVGLLGA 111 (346)
T ss_pred CceECC-CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEEC-------CCCEEecCCC--CCCCcccce
Confidence 599987 355 5899999999999999999985422 24678999999 8999999873 246677788
Q ss_pred eeE-EecCCEEEEEeccCCCC---------------------------------CccCcEEEEeccCCCCCcCeEEcccC
Q 021952 77 AAC-CIDNRKMVIHAGIGLYG---------------------------------LRLGDTWVLELSENFCFGSWQQLVTH 122 (305)
Q Consensus 77 ~~~-~~~~~~lyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~~~~~W~~~~~~ 122 (305)
+++ +.++ +||++||..... ..++++++||+.++ +|+.++
T Consensus 112 ~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~----~W~~~~-- 184 (346)
T TIGR03547 112 SGFSLHNG-QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN----QWRNLG-- 184 (346)
T ss_pred eEEEEeCC-EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC----ceeECc--
Confidence 777 4555 999999974210 01378999999999 999997
Q ss_pred CCCC-ccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEc--cccceeEEEeccccCCCCCCCCCCc-------ceeEE
Q 021952 123 PSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV--YEGFFKWVQIPYELQNIPAGFSLPR-------VGHSA 192 (305)
Q Consensus 123 ~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~--~~~~~~W~~~~~~~~~~~~~~p~~r-------~~~~~ 192 (305)
++|. +|..|+++.. +++|||+||.........+++.|++ ++ ++|+.+. .+|.+| .+|++
T Consensus 185 ~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~--~~W~~~~--------~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 185 ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGK--LEWNKLP--------PLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCC--ceeeecC--------CCCCCCCCccccccEEee
Confidence 7775 6888888888 5899999998533333456766665 55 7999984 565554 34545
Q ss_pred EEEeCCEEEEEeccCCCCC----------------ccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCC
Q 021952 193 TLILGGRVLIYGGEDSARR----------------RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNC 256 (305)
Q Consensus 193 ~~~~~~~l~v~GG~~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~ 256 (305)
++ .+++|||+||...... ....+.+||++ +++|+.+.. +|.+
T Consensus 254 ~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~------------------~~~W~~~~~---lp~~ 311 (346)
T TIGR03547 254 GI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD------------------NGKWSKVGK---LPQG 311 (346)
T ss_pred eE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec------------------CCcccccCC---CCCC
Confidence 55 7999999999863211 01235566665 889998865 8888
Q ss_pred CceeeeeeeCCCcEEEEEcCccCCC
Q 021952 257 RSFHRACPDYSGRYLYVFGGMVDGL 281 (305)
Q Consensus 257 r~~~~~~~~~~~~~i~v~GG~~~~~ 281 (305)
|..+++++ .+++|||+||....+
T Consensus 312 ~~~~~~~~--~~~~iyv~GG~~~~~ 334 (346)
T TIGR03547 312 LAYGVSVS--WNNGVLLIGGENSGG 334 (346)
T ss_pred ceeeEEEE--cCCEEEEEeccCCCC
Confidence 98776654 578999999985543
No 15
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=7e-32 Score=233.30 Aligned_cols=235 Identities=31% Similarity=0.580 Sum_probs=200.6
Q ss_pred cceEecC---CCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCcee
Q 021952 2 LKWQKVN---SGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAA 78 (305)
Q Consensus 2 ~~W~~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~ 78 (305)
++|+++. +..|.||.||.++++.+-|.||||-++. ..+++.+|+. .+++|..-...+..|++...|.+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNT-------atnqWf~PavrGDiPpgcAA~Gf 87 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNT-------ATNQWFAPAVRGDIPPGCAAFGF 87 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc--chhhhhhhcc-------ccceeecchhcCCCCCchhhcce
Confidence 6899984 3458899999999999999999998753 3678899999 89999998899999999999998
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-----cCCCCCccCCCeeEEEeCCEEEEEcccCCC---
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-----THPSPPARSGHSLTRIGGNRTVLFGGRGVG--- 150 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-----~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~--- 150 (305)
+..+. +||+|||+...+.++||+|.+-...- .|.++. .+.+|.||-+|+...++ ++.|+|||....
T Consensus 88 vcdGt-rilvFGGMvEYGkYsNdLYELQasRW----eWkrlkp~~p~nG~pPCPRlGHSFsl~g-nKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 88 VCDGT-RILVFGGMVEYGKYSNDLYELQASRW----EWKRLKPKTPKNGPPPCPRLGHSFSLVG-NKCYLFGGLANDSED 161 (830)
T ss_pred EecCc-eEEEEccEeeeccccchHHHhhhhhh----hHhhcCCCCCCCCCCCCCccCceeEEec-cEeEEeccccccccC
Confidence 88776 99999999889999999998866554 777765 56788999999999995 899999998321
Q ss_pred -----CcccceeEEEEcccc--ceeEEEeccccCCCCCCCCCCcceeEEEEEe-----CCEEEEEeccCCCCCccCcEEE
Q 021952 151 -----YEVLNDVWFLDVYEG--FFKWVQIPYELQNIPAGFSLPRVGHSATLIL-----GGRVLIYGGEDSARRRKDDFWV 218 (305)
Q Consensus 151 -----~~~~~~~~~~d~~~~--~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~ 218 (305)
..++||+|++++..+ -..|...- ..+.+|.+|-.|.++++. ..+++|+||..+ ..+.|+|.
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~-----t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~ 234 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPI-----TYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWT 234 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEeccc-----ccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeE
Confidence 237899999999862 35788774 778999999999998861 346999999964 66899999
Q ss_pred EecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCcc
Q 021952 219 LDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 278 (305)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 278 (305)
+|++ +..|.+....|..|.||+.|+++. .++++|||||..
T Consensus 235 Ldl~------------------Tl~W~kp~~~G~~PlPRSLHsa~~--IGnKMyvfGGWV 274 (830)
T KOG4152|consen 235 LDLD------------------TLTWNKPSLSGVAPLPRSLHSATT--IGNKMYVFGGWV 274 (830)
T ss_pred Eecc------------------eeecccccccCCCCCCccccccee--ecceeEEeccee
Confidence 9999 789999999999999999999987 689999999974
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.2e-31 Score=235.07 Aligned_cols=228 Identities=21% Similarity=0.283 Sum_probs=167.1
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccC-C----CCCcccceeecccccccccccceEEecccCCCCCCCCCCce
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIND-R----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHA 77 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~----~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~ 77 (305)
+|++++..+..+|.+++++.++++|||+||... . ....+++|+||+ .+++|++++. ..|.++.+|+
T Consensus 63 ~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~-------~~n~W~~~~~--~~p~~~~~~~ 133 (376)
T PRK14131 63 GWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP-------KTNSWQKLDT--RSPVGLAGHV 133 (376)
T ss_pred CeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeC-------CCCEEEeCCC--CCCCcccceE
Confidence 699987433368999999999999999999864 1 134688999999 8999999874 2466777888
Q ss_pred eEEecCCEEEEEeccCCCC---------------------------------CccCcEEEEeccCCCCCcCeEEcccCCC
Q 021952 78 ACCIDNRKMVIHAGIGLYG---------------------------------LRLGDTWVLELSENFCFGSWQQLVTHPS 124 (305)
Q Consensus 78 ~~~~~~~~lyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~ 124 (305)
++++.+++||++||..... ...+++++||+.++ +|+.+. ++
T Consensus 134 ~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~----~W~~~~--~~ 207 (376)
T PRK14131 134 AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN----QWKNAG--ES 207 (376)
T ss_pred EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC----eeeECC--cC
Confidence 8774445999999974210 02478999999999 999987 66
Q ss_pred CC-ccCCCeeEEEeCCEEEEEcccCCCCcccceeEE--EEccccceeEEEeccccCCCCCCCCCCcc--------eeEEE
Q 021952 125 PP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWF--LDVYEGFFKWVQIPYELQNIPAGFSLPRV--------GHSAT 193 (305)
Q Consensus 125 p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~--~d~~~~~~~W~~~~~~~~~~~~~~p~~r~--------~~~~~ 193 (305)
|. +|.+|+++.+ +++|||+||.........+++. ||+++ .+|+++. .+|.+|. ++.++
T Consensus 208 p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~--~~W~~~~--------~~p~~~~~~~~~~~~~~~a~ 276 (376)
T PRK14131 208 PFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNN--LKWQKLP--------DLPPAPGGSSQEGVAGAFAG 276 (376)
T ss_pred CCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCC--cceeecC--------CCCCCCcCCcCCccceEece
Confidence 75 6888888787 5899999997543334455554 45677 9999984 5665553 22233
Q ss_pred EEeCCEEEEEeccCCCCCc-------------c---CcEEEEecCCCCccccccccccccccccccceeecccCcCCCCC
Q 021952 194 LILGGRVLIYGGEDSARRR-------------K---DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR 257 (305)
Q Consensus 194 ~~~~~~l~v~GG~~~~~~~-------------~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r 257 (305)
+.+++|||+||.+..... . ..+.+||++ +++|+.+.. +|.+|
T Consensus 277 -~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~------------------~~~W~~~~~---lp~~r 334 (376)
T PRK14131 277 -YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV------------------NGKWQKVGE---LPQGL 334 (376)
T ss_pred -eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec------------------CCcccccCc---CCCCc
Confidence 378999999998643210 0 134566666 889998754 89999
Q ss_pred ceeeeeeeCCCcEEEEEcCccCC
Q 021952 258 SFHRACPDYSGRYLYVFGGMVDG 280 (305)
Q Consensus 258 ~~~~~~~~~~~~~i~v~GG~~~~ 280 (305)
..+++++ .+++|||+||....
T Consensus 335 ~~~~av~--~~~~iyv~GG~~~~ 355 (376)
T PRK14131 335 AYGVSVS--WNNGVLLIGGETAG 355 (376)
T ss_pred cceEEEE--eCCEEEEEcCCCCC
Confidence 8887665 46899999998543
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=5.7e-30 Score=224.30 Aligned_cols=218 Identities=18% Similarity=0.275 Sum_probs=166.2
Q ss_pred CCCCcceeEEEECCEEEEEccccCCCC---------CcccceeecccccccccccceEEecccCCCCCCCCCCceeEEec
Q 021952 12 PSGRFGHTCVVIGDCLVLFGGINDRGN---------RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 82 (305)
Q Consensus 12 p~~r~~~~~~~~~~~lyv~GG~~~~~~---------~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (305)
+..+.++.++++++.|||+||.+.+.. ..+++|+|+.. . .+.+|..+. .+|.+|..+++++++
T Consensus 1 ~~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~-~----~~~~W~~~~---~lp~~r~~~~~~~~~ 72 (323)
T TIGR03548 1 SLGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDE-N----SNLKWVKDG---QLPYEAAYGASVSVE 72 (323)
T ss_pred CCceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecC-C----CceeEEEcc---cCCccccceEEEEEC
Confidence 456788999999999999999976532 34578877620 0 234798876 467889888888887
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCe----EEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSW----QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 158 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W----~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 158 (305)
+ +||++||.... ..++++++||+.++ +| +.++ ++|.+|..|+++++ +++||++||.. .....++++
T Consensus 73 ~-~lyviGG~~~~-~~~~~v~~~d~~~~----~w~~~~~~~~--~lp~~~~~~~~~~~-~~~iYv~GG~~-~~~~~~~v~ 142 (323)
T TIGR03548 73 N-GIYYIGGSNSS-ERFSSVYRITLDES----KEELICETIG--NLPFTFENGSACYK-DGTLYVGGGNR-NGKPSNKSY 142 (323)
T ss_pred C-EEEEEcCCCCC-CCceeEEEEEEcCC----ceeeeeeEcC--CCCcCccCceEEEE-CCEEEEEeCcC-CCccCceEE
Confidence 6 99999997543 45789999999998 87 4454 88999999999998 58999999974 344578999
Q ss_pred EEEccccceeEEEeccccCCCCCCCC-CCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCcccccccccccc
Q 021952 159 FLDVYEGFFKWVQIPYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR 237 (305)
Q Consensus 159 ~~d~~~~~~~W~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 237 (305)
+||+.+ ++|+++. ++| .+|..|++++ .+++|||+||.+.. ...++++||++
T Consensus 143 ~yd~~~--~~W~~~~--------~~p~~~r~~~~~~~-~~~~iYv~GG~~~~--~~~~~~~yd~~--------------- 194 (323)
T TIGR03548 143 LFNLET--QEWFELP--------DFPGEPRVQPVCVK-LQNELYVFGGGSNI--AYTDGYKYSPK--------------- 194 (323)
T ss_pred EEcCCC--CCeeECC--------CCCCCCCCcceEEE-ECCEEEEEcCCCCc--cccceEEEecC---------------
Confidence 999999 9999994 566 4688777765 78999999998643 24578899998
Q ss_pred ccccccceeecccC--cCCCCCceeeeeeeCCCcEEEEEcCccC
Q 021952 238 GLLLNMWKRLRAEG--YKPNCRSFHRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 238 ~~~~~~W~~v~~~~--~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 279 (305)
+++|+++.... ..|..+..+.++++ .+++|||+||...
T Consensus 195 ---~~~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~ 234 (323)
T TIGR03548 195 ---KNQWQKVADPTTDSEPISLLGAASIKI-NESLLLCIGGFNK 234 (323)
T ss_pred ---CCeeEECCCCCCCCCceeccceeEEEE-CCCEEEEECCcCH
Confidence 88999987532 23444444444333 4679999999853
No 18
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=9.4e-30 Score=235.71 Aligned_cols=214 Identities=24% Similarity=0.338 Sum_probs=185.5
Q ss_pred CCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEec
Q 021952 12 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAG 91 (305)
Q Consensus 12 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG 91 (305)
+.+|..... ...+.||++||.....+..+.+.+||+ .++.|..+.. +|.+|..++++++++ +||++||
T Consensus 273 ~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~-------~~~~w~~~a~---m~~~r~~~~~~~~~~-~lYv~GG 340 (571)
T KOG4441|consen 273 QSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDP-------KTNEWSSLAP---MPSPRCRVGVAVLNG-KLYVVGG 340 (571)
T ss_pred cCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecC-------CcCcEeecCC---CCcccccccEEEECC-EEEEEcc
Confidence 445544443 446789999999865567888999999 7889999884 678999888888887 9999999
Q ss_pred cCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEE
Q 021952 92 IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ 171 (305)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 171 (305)
.+.....++++++||+.++ +|..++ +++.+|..|+++.+ ++.||++||++ +...++.+++||+.+ ++|+.
T Consensus 341 ~~~~~~~l~~ve~YD~~~~----~W~~~a--~M~~~R~~~~v~~l-~g~iYavGG~d-g~~~l~svE~YDp~~--~~W~~ 410 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTN----QWTPVA--PMNTKRSDFGVAVL-DGKLYAVGGFD-GEKSLNSVECYDPVT--NKWTP 410 (571)
T ss_pred ccCCCcccceEEEecCCCC----ceeccC--CccCccccceeEEE-CCEEEEEeccc-cccccccEEEecCCC--Ccccc
Confidence 8643356899999999999 999998 99999999999999 58999999996 778899999999999 99999
Q ss_pred eccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecccC
Q 021952 172 IPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG 251 (305)
Q Consensus 172 ~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~ 251 (305)
+ .+++.+|++|++++ .+++||++||.+......+.+..||+. +++|+.+.+
T Consensus 411 v--------a~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~------------------t~~W~~~~~-- 461 (571)
T KOG4441|consen 411 V--------APMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPE------------------TNTWTLIAP-- 461 (571)
T ss_pred c--------CCCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCC------------------CCceeecCC--
Confidence 9 58888999998887 899999999998876678899999998 899999877
Q ss_pred cCCCCCceeeeeeeCCCcEEEEEcCccC
Q 021952 252 YKPNCRSFHRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 252 ~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 279 (305)
++.+|.++++++. +++||++||...
T Consensus 462 -M~~~R~~~g~a~~--~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 462 -MNTRRSGFGVAVL--NGKIYVVGGFDG 486 (571)
T ss_pred -cccccccceEEEE--CCEEEEECCccC
Confidence 9999999998774 689999999865
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=4.1e-29 Score=221.08 Aligned_cols=218 Identities=22% Similarity=0.244 Sum_probs=164.3
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCC-CCCCCceeEEecCCEEEE
Q 021952 10 GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP-PARGAHAACCIDNRKMVI 88 (305)
Q Consensus 10 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~lyv 88 (305)
.+|.+|..+++++++++|||+||... +++|+||++ ..+++|++++. +| .+|..|+++++++ +||+
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~-----~~~~~W~~l~~---~p~~~R~~~~~~~~~~-~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLK-----KPSKGWQKIAD---FPGGPRNQAVAAAIDG-KLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC-----CeeEEEECC-----CCCCCceECCC---CCCCCcccceEEEECC-EEEE
Confidence 46889999899899999999999742 468888872 13678999874 45 4788899888887 9999
Q ss_pred EeccCCCC-----CccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeE-EEeCCEEEEEcccCCCC-----------
Q 021952 89 HAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT-RIGGNRTVLFGGRGVGY----------- 151 (305)
Q Consensus 89 ~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~-~~~~~~i~v~GG~~~~~----------- 151 (305)
+||..... ..++++++||+.++ +|++++. ..|.+|.+|+++ +. +++||++||.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~----~W~~~~~-~~p~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~ 142 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKN----SWQKLDT-RSPVGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFADLSAA 142 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCC----EEecCCC-CCCCcccceeEEEEe-CCEEEEEcCcChHHHHHHHhhHhhc
Confidence 99975322 24789999999999 9999962 456677788776 45 68999999985210
Q ss_pred ----------------------cccceeEEEEccccceeEEEeccccCCCCCCCCC-CcceeEEEEEeCCEEEEEeccCC
Q 021952 152 ----------------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDS 208 (305)
Q Consensus 152 ----------------------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~ 208 (305)
...+++++||+.+ ++|+.+. ++|. +|..++++. .+++|||+||...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t--~~W~~~~--------~~p~~~r~~~~~~~-~~~~iyv~GG~~~ 211 (346)
T TIGR03547 143 DKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST--NQWRNLG--------ENPFLGTAGSAIVH-KGNKLLLINGEIK 211 (346)
T ss_pred CccchhhhhhHHHHhCCChhHcCccceEEEEECCC--CceeECc--------cCCCCcCCCceEEE-ECCEEEEEeeeeC
Confidence 0137899999999 9999994 7775 677776665 7999999999865
Q ss_pred CCCccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCC-------ceeeeeeeCCCcEEEEEcCccC
Q 021952 209 ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR-------SFHRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 209 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r-------~~~~~~~~~~~~~i~v~GG~~~ 279 (305)
.+....+++.||+... +++|+++.. +|.+| ..|.+++ .+++|||+||...
T Consensus 212 ~~~~~~~~~~y~~~~~----------------~~~W~~~~~---m~~~r~~~~~~~~~~~a~~--~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 212 PGLRTAEVKQYLFTGG----------------KLEWNKLPP---LPPPKSSSQEGLAGAFAGI--SNGVLLVAGGANF 268 (346)
T ss_pred CCccchheEEEEecCC----------------CceeeecCC---CCCCCCCccccccEEeeeE--ECCEEEEeecCCC
Confidence 5444566777775322 679998866 55544 3444444 4789999999853
No 20
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=213.90 Aligned_cols=204 Identities=23% Similarity=0.453 Sum_probs=170.0
Q ss_pred ceEecCCC-CCCCCcceeEEEEC-CEEEEEccccC-CCC----CcccceeecccccccccccceEEecccCCCCCCCCCC
Q 021952 3 KWQKVNSG-IPSGRFGHTCVVIG-DCLVLFGGIND-RGN----RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGA 75 (305)
Q Consensus 3 ~W~~~~~~-~p~~r~~~~~~~~~-~~lyv~GG~~~-~~~----~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~ 75 (305)
.|+++.+. +|+||.+|+++++. +.+|||||... +++ ...|+|.|++ .+.+|+++...+ .|.||.+
T Consensus 109 eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~-------~trkweql~~~g-~PS~RSG 180 (521)
T KOG1230|consen 109 EWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDL-------KTRKWEQLEFGG-GPSPRSG 180 (521)
T ss_pred ceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeee-------ccchheeeccCC-CCCCCcc
Confidence 69999644 68999999999996 78999999843 222 3479999999 899999999887 8999999
Q ss_pred ceeEEecCCEEEEEeccCCCC---CccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCC--
Q 021952 76 HAACCIDNRKMVIHAGIGLYG---LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGV-- 149 (305)
Q Consensus 76 ~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~-- 149 (305)
|-+++... +|++|||..... .++||+|+||+++ ++|+++. .+-.|.||++|++.+..++.|||.||+..
T Consensus 181 HRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdt----ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 181 HRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDT----YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred ceeEEeee-eEEEEcceecCCCceEEeeeeEEEeccc----eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 99999997 999999974332 4589999999999 5999999 55679999999999997799999999942
Q ss_pred ------CCcccceeEEEEcccc---ceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCC--------CCCc
Q 021952 150 ------GYEVLNDVWFLDVYEG---FFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRR 212 (305)
Q Consensus 150 ------~~~~~~~~~~~d~~~~---~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~ 212 (305)
.....+|+|.++++.+ .-.|.++. ..+..|.||.++++++..+++-+.|||... .+.+
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk-----p~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F 330 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK-----PSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEF 330 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeecc-----CCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhh
Confidence 2346789999999772 24688886 678889999999998877889999999843 2567
Q ss_pred cCcEEEEecCCC
Q 021952 213 KDDFWVLDTKAI 224 (305)
Q Consensus 213 ~~~~~~~d~~~~ 224 (305)
.+|+|.||+...
T Consensus 331 ~NDLy~fdlt~n 342 (521)
T KOG1230|consen 331 FNDLYFFDLTRN 342 (521)
T ss_pred hhhhhheecccc
Confidence 899999999933
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=3.5e-28 Score=216.88 Aligned_cols=227 Identities=20% Similarity=0.252 Sum_probs=164.5
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCC-CCCCCceeEEe
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP-PARGAHAACCI 81 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~ 81 (305)
.+++++ .+|.||..++++.++++|||+||... +.+|+||+. ..+++|.++.. +| .+|..|+++.+
T Consensus 18 ~~~~l~-~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~-----~~~~~W~~l~~---~p~~~r~~~~~v~~ 83 (376)
T PRK14131 18 NAEQLP-DLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLN-----APSKGWTKIAA---FPGGPREQAVAAFI 83 (376)
T ss_pred ecccCC-CCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECC-----CCCCCeEECCc---CCCCCcccceEEEE
Confidence 456665 57888888899999999999999743 347888881 12578998774 33 47888888888
Q ss_pred cCCEEEEEeccCC-C----CCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCC-----
Q 021952 82 DNRKMVIHAGIGL-Y----GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY----- 151 (305)
Q Consensus 82 ~~~~lyv~GG~~~-~----~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----- 151 (305)
++ +||++||... . ...++++|+||+.++ +|++++. ..|.++.+|+++.+.+++||++||.....
T Consensus 84 ~~-~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n----~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~ 157 (376)
T PRK14131 84 DG-KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN----SWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYF 157 (376)
T ss_pred CC-EEEEEcCCCCCCCCCceeEcccEEEEeCCCC----EEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHH
Confidence 86 9999999753 1 124689999999999 9999973 34667788887774478999999974210
Q ss_pred ----------------------------cccceeEEEEccccceeEEEeccccCCCCCCCCC-CcceeEEEEEeCCEEEE
Q 021952 152 ----------------------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLI 202 (305)
Q Consensus 152 ----------------------------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v 202 (305)
...+++++||+.+ ++|+.+ .++|. +|..|+++. .+++|||
T Consensus 158 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t--~~W~~~--------~~~p~~~~~~~a~v~-~~~~iYv 226 (376)
T PRK14131 158 EDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST--NQWKNA--------GESPFLGTAGSAVVI-KGNKLWL 226 (376)
T ss_pred hhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC--CeeeEC--------CcCCCCCCCcceEEE-ECCEEEE
Confidence 1247899999999 999998 36775 677776655 7999999
Q ss_pred EeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCCce------eeeeeeCCCcEEEEEcC
Q 021952 203 YGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF------HRACPDYSGRYLYVFGG 276 (305)
Q Consensus 203 ~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~------~~~~~~~~~~~i~v~GG 276 (305)
+||....+....+++.|++. +++.+|+.+.. +|.+|.. +++.+...+++|||+||
T Consensus 227 ~GG~~~~~~~~~~~~~~~~~----------------~~~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 227 INGEIKPGLRTDAVKQGKFT----------------GNNLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred EeeeECCCcCChhheEEEec----------------CCCcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeec
Confidence 99986655455666655432 11789998875 5555431 11111224679999999
Q ss_pred ccC
Q 021952 277 MVD 279 (305)
Q Consensus 277 ~~~ 279 (305)
...
T Consensus 288 ~~~ 290 (376)
T PRK14131 288 ANF 290 (376)
T ss_pred cCC
Confidence 854
No 22
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=226.87 Aligned_cols=197 Identities=20% Similarity=0.280 Sum_probs=166.5
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEec
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 82 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (305)
+|++++ ..|.+|.+|+++.++++||++||... ....+++++||+ .+++|+.++. +|.+|..|+++..+
T Consensus 322 ~W~~~~-~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---lp~~r~~~~~~~~~ 389 (534)
T PHA03098 322 SWNKVP-ELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKP-------GESKWREEPP---LIFPRYNPCVVNVN 389 (534)
T ss_pred eeeECC-CCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcC-------CCCceeeCCC---cCcCCccceEEEEC
Confidence 698886 56789999999999999999999874 345788999999 7999998763 67899999999888
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCc--ccceeEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE--VLNDVWFL 160 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~ 160 (305)
+ +||++||....+..++++++||+.++ +|+.++ ++|.+|.+|+++.. +++||++||...... ..+.+++|
T Consensus 390 ~-~iYv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~y 461 (534)
T PHA03098 390 N-LIYVIGGISKNDELLKTVECFSLNTN----KWSKGS--PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESY 461 (534)
T ss_pred C-EEEEECCcCCCCcccceEEEEeCCCC----eeeecC--CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEe
Confidence 7 99999997555556789999999999 999998 78899999999888 589999999853322 35679999
Q ss_pred EccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccc
Q 021952 161 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLL 240 (305)
Q Consensus 161 d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 240 (305)
|+.+ ++|+.+. .+|.+|..+++++ .+++|||+||.... ...+++++||+.
T Consensus 462 d~~~--~~W~~~~--------~~~~~r~~~~~~~-~~~~iyv~GG~~~~-~~~~~v~~yd~~------------------ 511 (534)
T PHA03098 462 NPVT--NKWTELS--------SLNFPRINASLCI-FNNKIYVVGGDKYE-YYINEIEVYDDK------------------ 511 (534)
T ss_pred cCCC--CceeeCC--------CCCcccccceEEE-ECCEEEEEcCCcCC-cccceeEEEeCC------------------
Confidence 9999 9999994 6788899888877 69999999999754 336789999998
Q ss_pred cccceeecc
Q 021952 241 LNMWKRLRA 249 (305)
Q Consensus 241 ~~~W~~v~~ 249 (305)
+++|+.+..
T Consensus 512 ~~~W~~~~~ 520 (534)
T PHA03098 512 TNTWTLFCK 520 (534)
T ss_pred CCEEEecCC
Confidence 889998854
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=219.40 Aligned_cols=191 Identities=17% Similarity=0.222 Sum_probs=160.7
Q ss_pred EEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCcc
Q 021952 20 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 99 (305)
Q Consensus 20 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 99 (305)
.+..++.||++||.... ...+.+++||+ .+++|..++. +|.+|..+++++.++ +||++||... .
T Consensus 267 ~~~~~~~lyviGG~~~~-~~~~~v~~Ydp-------~~~~W~~~~~---m~~~r~~~~~v~~~~-~iYviGG~~~----~ 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN-EIHNNAIAVNY-------ISNNWIPIPP---MNSPRLYASGVPANN-KLYVVGGLPN----P 330 (480)
T ss_pred eEEECCEEEEEcCCCCC-CcCCeEEEEEC-------CCCEEEECCC---CCchhhcceEEEECC-EEEEECCcCC----C
Confidence 34579999999998643 34678999999 7899999884 578998899988887 9999999732 2
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCC
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 179 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 179 (305)
+.+++||+.++ +|+.++ ++|.+|..|+++.. +++||++||.... .+.+.+||+++ ++|+.++
T Consensus 331 ~sve~ydp~~n----~W~~~~--~l~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp~~--~~W~~~~------ 392 (480)
T PHA02790 331 TSVERWFHGDA----AWVNMP--SLLKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLPNH--DQWQFGP------ 392 (480)
T ss_pred CceEEEECCCC----eEEECC--CCCCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeCCC--CEEEeCC------
Confidence 56899999999 999998 88999999999988 5899999998422 36789999999 9999984
Q ss_pred CCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCCce
Q 021952 180 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF 259 (305)
Q Consensus 180 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~ 259 (305)
++|.+|..|++++ .+++|||+||. +.+||++ +++|+.+.. +|.+|..
T Consensus 393 --~m~~~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~------------------~~~W~~~~~---m~~~r~~ 439 (480)
T PHA02790 393 --STYYPHYKSCALV-FGRRLFLVGRN---------AEFYCES------------------SNTWTLIDD---PIYPRDN 439 (480)
T ss_pred --CCCCccccceEEE-ECCEEEEECCc---------eEEecCC------------------CCcEeEcCC---CCCCccc
Confidence 8899999998876 79999999984 4678887 889998865 8889998
Q ss_pred eeeeeeCCCcEEEEEcCccC
Q 021952 260 HRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 260 ~~~~~~~~~~~i~v~GG~~~ 279 (305)
++++++ +++||++||...
T Consensus 440 ~~~~v~--~~~IYviGG~~~ 457 (480)
T PHA02790 440 PELIIV--DNKLLLIGGFYR 457 (480)
T ss_pred cEEEEE--CCEEEEECCcCC
Confidence 888774 689999999853
No 24
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=9e-28 Score=223.26 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=160.4
Q ss_pred EEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEE
Q 021952 26 CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVL 105 (305)
Q Consensus 26 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 105 (305)
.+++.||.. ......+++||+ .+.+|..++. +|.+|..|+++++++ +||++||........+++++|
T Consensus 259 ~l~~~~g~~--~~~~~~v~~yd~-------~~~~W~~l~~---mp~~r~~~~~a~l~~-~IYviGG~~~~~~~~~~v~~Y 325 (557)
T PHA02713 259 CLVCHDTKY--NVCNPCILVYNI-------NTMEYSVIST---IPNHIINYASAIVDN-EIIIAGGYNFNNPSLNKVYKI 325 (557)
T ss_pred EEEEecCcc--ccCCCCEEEEeC-------CCCeEEECCC---CCccccceEEEEECC-EEEEEcCCCCCCCccceEEEE
Confidence 355555532 122356899999 8999999874 678888898888887 999999975334457899999
Q ss_pred eccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCC
Q 021952 106 ELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL 185 (305)
Q Consensus 106 d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~ 185 (305)
|+.++ +|..++ ++|.+|..|+++.+ +++||++||.. .....+++++||+.+ ++|+.+ .++|.
T Consensus 326 d~~~n----~W~~~~--~m~~~R~~~~~~~~-~g~IYviGG~~-~~~~~~sve~Ydp~~--~~W~~~--------~~mp~ 387 (557)
T PHA02713 326 NIENK----IHVELP--PMIKNRCRFSLAVI-DDTIYAIGGQN-GTNVERTIECYTMGD--DKWKML--------PDMPI 387 (557)
T ss_pred ECCCC----eEeeCC--CCcchhhceeEEEE-CCEEEEECCcC-CCCCCceEEEEECCC--CeEEEC--------CCCCc
Confidence 99999 999998 88999999999999 58999999985 445678899999999 999999 48999
Q ss_pred CcceeEEEEEeCCEEEEEeccCCCCC-----------------ccCcEEEEecCCCCccccccccccccccccccceeec
Q 021952 186 PRVGHSATLILGGRVLIYGGEDSARR-----------------RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR 248 (305)
Q Consensus 186 ~r~~~~~~~~~~~~l~v~GG~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~ 248 (305)
+|..+++++ .+++||++||.+.... ..+.+++||+. +++|+.+.
T Consensus 388 ~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~------------------td~W~~v~ 448 (557)
T PHA02713 388 ALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV------------------NNIWETLP 448 (557)
T ss_pred ccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC------------------CCeEeecC
Confidence 999998876 7999999999864321 13556667766 89999886
Q ss_pred ccCcCCCCCceeeeeeeCCCcEEEEEcCccC
Q 021952 249 AEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 279 (305)
Q Consensus 249 ~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 279 (305)
+ ++.+|..+++++ .+++|||+||...
T Consensus 449 ~---m~~~r~~~~~~~--~~~~IYv~GG~~~ 474 (557)
T PHA02713 449 N---FWTGTIRPGVVS--HKDDIYVVCDIKD 474 (557)
T ss_pred C---CCcccccCcEEE--ECCEEEEEeCCCC
Confidence 5 888999888876 4589999999853
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.6e-28 Score=208.41 Aligned_cols=238 Identities=26% Similarity=0.446 Sum_probs=190.8
Q ss_pred ceEe--cCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEeccc----CCCCCCCCCCc
Q 021952 3 KWQK--VNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDV----GSIAPPARGAH 76 (305)
Q Consensus 3 ~W~~--~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~p~~r~~~ 76 (305)
+|.. +.+..|++...|..+-.+.+||+|||..+-+++++|+|.+.- ....|+++.+ .+.+|-||.+|
T Consensus 68 qWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQa-------sRWeWkrlkp~~p~nG~pPCPRlGH 140 (830)
T KOG4152|consen 68 QWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQA-------SRWEWKRLKPKTPKNGPPPCPRLGH 140 (830)
T ss_pred eeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhh-------hhhhHhhcCCCCCCCCCCCCCccCc
Confidence 3544 347789998888888889999999999998999999988887 6788988773 45677899999
Q ss_pred eeEEecCCEEEEEeccCCCC--------CccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEe-----CCEEE
Q 021952 77 AACCIDNRKMVIHAGIGLYG--------LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIG-----GNRTV 142 (305)
Q Consensus 77 ~~~~~~~~~lyv~GG~~~~~--------~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~-----~~~i~ 142 (305)
+...+++ +.|+|||...+. .+++|+|+++++-+.+-+.|+..- .+..|.+|-+|+++.+. ..+|+
T Consensus 141 SFsl~gn-KcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmv 219 (830)
T KOG4152|consen 141 SFSLVGN-KCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMV 219 (830)
T ss_pred eeEEecc-EeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEE
Confidence 9999997 999999973221 358999999999765667798877 78999999999999882 24699
Q ss_pred EEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCC------------
Q 021952 143 LFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR------------ 210 (305)
Q Consensus 143 v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~------------ 210 (305)
|+||.. ...+.|+|.+|+++ .+|.+.+ .++..|.||..|++.. .++++|||||.....
T Consensus 220 vyGGM~--G~RLgDLW~Ldl~T--l~W~kp~-----~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekE 289 (830)
T KOG4152|consen 220 VYGGMS--GCRLGDLWTLDLDT--LTWNKPS-----LSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKE 289 (830)
T ss_pred EEcccc--cccccceeEEecce--eeccccc-----ccCCCCCCccccccee-ecceeEEecceeeeeccccccccccce
Confidence 999973 46789999999999 9999997 6688899999999987 799999999994210
Q ss_pred -CccCcEEEEecCCCCccccccccccccccccccceeecc----cCcCCCCCceeeeeeeCCCcEEEEEcCcc
Q 021952 211 -RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA----EGYKPNCRSFHRACPDYSGRYLYVFGGMV 278 (305)
Q Consensus 211 -~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~----~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 278 (305)
...+.+-.+|+. +..|+.+-. .-..|.+|.+|++++ .+.++||.-|..
T Consensus 290 WkCTssl~clNld------------------t~~W~tl~~d~~ed~tiPR~RAGHCAvA--igtRlYiWSGRD 342 (830)
T KOG4152|consen 290 WKCTSSLACLNLD------------------TMAWETLLMDTLEDNTIPRARAGHCAVA--IGTRLYIWSGRD 342 (830)
T ss_pred eeeccceeeeeec------------------chheeeeeeccccccccccccccceeEE--eccEEEEEeccc
Confidence 112334444444 888987632 123899999999987 578999999984
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=7.5e-26 Score=207.53 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=147.5
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEec
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 82 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 82 (305)
+|.+++ .+|.+|..++++.++++||++||... .+.+++||+ .+++|..+++ +|.+|..|++++.+
T Consensus 298 ~W~~~~-~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp-------~~n~W~~~~~---l~~~r~~~~~~~~~ 362 (480)
T PHA02790 298 NWIPIP-PMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFH-------GDAAWVNMPS---LLKPRCNPAVASIN 362 (480)
T ss_pred EEEECC-CCCchhhcceEEEECCEEEEECCcCC----CCceEEEEC-------CCCeEEECCC---CCCCCcccEEEEEC
Confidence 598987 46889999999999999999999753 246889998 7889998773 67899999999988
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEc
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 162 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~ 162 (305)
+ +||++||.... .+.+.+||+.++ +|+.++ +++.+|..|+++++ +++||++||. +.+||+
T Consensus 363 g-~IYviGG~~~~---~~~ve~ydp~~~----~W~~~~--~m~~~r~~~~~~~~-~~~IYv~GG~---------~e~ydp 422 (480)
T PHA02790 363 N-VIYVIGGHSET---DTTTEYLLPNHD----QWQFGP--STYYPHYKSCALVF-GRRLFLVGRN---------AEFYCE 422 (480)
T ss_pred C-EEEEecCcCCC---CccEEEEeCCCC----EEEeCC--CCCCccccceEEEE-CCEEEEECCc---------eEEecC
Confidence 7 99999997422 367899999999 999998 88899999999988 5899999984 568999
Q ss_pred cccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 163 YEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 163 ~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
++ ++|+.+. ++|.+|..+++++ .+++||++||.+.. ...+.++.||+.
T Consensus 423 ~~--~~W~~~~--------~m~~~r~~~~~~v-~~~~IYviGG~~~~-~~~~~ve~Yd~~ 470 (480)
T PHA02790 423 SS--NTWTLID--------DPIYPRDNPELII-VDNKLLLIGGFYRG-SYIDTIEVYNNR 470 (480)
T ss_pred CC--CcEeEcC--------CCCCCccccEEEE-ECCEEEEECCcCCC-cccceEEEEECC
Confidence 99 9999994 7889999998876 79999999998743 335778999998
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=5.8e-20 Score=153.84 Aligned_cols=247 Identities=21% Similarity=0.299 Sum_probs=180.9
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCC----CCCcccceeecccccccccccceEEecccCCCCCCCCCCcee
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDR----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAA 78 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~ 78 (305)
.|++++..+-.+|.+.++++++++||+|||.... .+..+|+|+||+ .+++|.++... .|....+|.+
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p-------~~nsW~kl~t~--sP~gl~G~~~ 141 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDP-------STNSWHKLDTR--SPTGLVGAST 141 (381)
T ss_pred CceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecC-------CCChhheeccc--ccccccccee
Confidence 5999987788899999999999999999998543 235789999999 89999998875 4677889999
Q ss_pred EEecCCEEEEEeccCCC---------------------------------CCccCcEEEEeccCCCCCcCeEEcccCCCC
Q 021952 79 CCIDNRKMVIHAGIGLY---------------------------------GLRLGDTWVLELSENFCFGSWQQLVTHPSP 125 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~---------------------------------~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p 125 (305)
+..++.+||++||.... -....+++.|+++++ +|+.+- ..|
T Consensus 142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n----~W~~~G--~~p 215 (381)
T COG3055 142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN----QWRNLG--ENP 215 (381)
T ss_pred EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc----hhhhcC--cCc
Confidence 99888899999997321 012568899999999 998875 344
Q ss_pred -CccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEe
Q 021952 126 -PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG 204 (305)
Q Consensus 126 -~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 204 (305)
.++++ ++++++++++.++-|.....-++..+++++...+..+|.+++..+.++..+. ....++-+-. .++.++|.|
T Consensus 216 f~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~-eGvAGaf~G~-s~~~~lv~G 292 (381)
T COG3055 216 FYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK-EGVAGAFSGK-SNGEVLVAG 292 (381)
T ss_pred ccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCc-cccceeccce-eCCeEEEec
Confidence 45666 5667767889999998766667778888888766689999963322222222 3333333333 678889999
Q ss_pred ccCCCC------------------CccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeC
Q 021952 205 GEDSAR------------------RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDY 266 (305)
Q Consensus 205 G~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~ 266 (305)
|..-++ ...++||++| .+.|+.+ +++|.++....++.
T Consensus 293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--------------------~g~Wk~~---GeLp~~l~YG~s~~-- 347 (381)
T COG3055 293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--------------------NGSWKIV---GELPQGLAYGVSLS-- 347 (381)
T ss_pred CCCChhHHHHHHhcccccccchhhhhhceEEEEc--------------------CCceeee---cccCCCccceEEEe--
Confidence 885321 2246889888 6789987 55888776544433
Q ss_pred CCcEEEEEcCccCCCcccCCCccccc
Q 021952 267 SGRYLYVFGGMVDGLVQPADTSGLRF 292 (305)
Q Consensus 267 ~~~~i~v~GG~~~~~~~~~~~~~~~~ 292 (305)
.++.++++||+..+.......+.+.+
T Consensus 348 ~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 348 YNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred cCCcEEEEccccCCCeeeeeEEEEEE
Confidence 67899999999888766555554333
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.79 E-value=4.6e-20 Score=159.99 Aligned_cols=191 Identities=20% Similarity=0.354 Sum_probs=146.0
Q ss_pred cceEecC--C-------CCCCCCcceeEEEECC--EEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCC
Q 021952 2 LKWQKVN--S-------GIPSGRFGHTCVVIGD--CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP 70 (305)
Q Consensus 2 ~~W~~~~--~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p 70 (305)
++|.+++ + .-|.-|.||.|+...+ .||++||+++. +.+.|+|.|+. ..+.|..+...+..|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v-------~e~~W~~iN~~t~~P 310 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSV-------KENQWTCINRDTEGP 310 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcC-------CcceeEEeecCCCCC
Confidence 4788874 2 3488999999998865 69999999874 44889999999 788999999888899
Q ss_pred CCCCCceeEEec-CCEEEEEeccCCCC-----CccCcEEEEeccCCCCCcCeEEcc--c--CCCCCccCCCeeEEEeCCE
Q 021952 71 PARGAHAACCID-NRKMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLV--T--HPSPPARSGHSLTRIGGNR 140 (305)
Q Consensus 71 ~~r~~~~~~~~~-~~~lyv~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~--~--~~~p~~r~~~~~~~~~~~~ 140 (305)
..|..|-++... ..++|+.|-+-+.. ..-+|+|+||.+++ .|..+. + ...|...+.|.|++.+ .+
T Consensus 311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~----~W~~ls~dt~~dGGP~~vfDHqM~Vd~-~k 385 (723)
T KOG2437|consen 311 GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN----TWMLLSEDTAADGGPKLVFDHQMCVDS-EK 385 (723)
T ss_pred cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc----eeEEecccccccCCcceeecceeeEec-Cc
Confidence 999999999864 35899999763222 22469999999999 999998 2 2578889999999996 45
Q ss_pred --EEEEcccCCC--CcccceeEEEEccccceeEEEeccccC--CCCCCCCCCcceeEEEEE-eCCEEEEEeccC
Q 021952 141 --TVLFGGRGVG--YEVLNDVWFLDVYEGFFKWVQIPYELQ--NIPAGFSLPRVGHSATLI-LGGRVLIYGGED 207 (305)
Q Consensus 141 --i~v~GG~~~~--~~~~~~~~~~d~~~~~~~W~~~~~~~~--~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~ 207 (305)
+|||||+.-. ...+..++.||+.. ..|..+.-... ......-..|.+|++-.. .++++|++||..
T Consensus 386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~--~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 386 HMIYVFGGRILTCNEPQFSGLYAFNCQC--QTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred ceEEEecCeeccCCCccccceEEEecCC--ccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 9999998432 24577899999999 99988752211 112233456777766443 567789999874
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1e-16 Score=134.47 Aligned_cols=246 Identities=20% Similarity=0.250 Sum_probs=174.1
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEE
Q 021952 10 GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIH 89 (305)
Q Consensus 10 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~ 89 (305)
..|.+--+.+.+.+++.+||-=|... ...|.+|+.. ....|+++... +-.+|...+++++++ +||+|
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~-----~~k~W~~~a~F--pG~~rnqa~~a~~~~-kLyvF 98 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKK-----PGKGWTKIADF--PGGARNQAVAAVIGG-KLYVF 98 (381)
T ss_pred CCCccccccccceecceEEEEeccCC-----ccceehhhhc-----CCCCceEcccC--CCcccccchheeeCC-eEEEe
Confidence 46778877888999999998544222 2567788832 26789998853 346788888887877 99999
Q ss_pred eccCCCCC----ccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCC----------------
Q 021952 90 AGIGLYGL----RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV---------------- 149 (305)
Q Consensus 90 GG~~~~~~----~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~---------------- 149 (305)
||.+.... .++++|+||+++| +|+++.+ ..|....+++++...+.+++++||.+.
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~n----sW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d 173 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTN----SWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKD 173 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCC----hhheecc-ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhccc
Confidence 99865433 4899999999999 9999974 445567888898997779999999832
Q ss_pred -----------------CCcccceeEEEEccccceeEEEeccccCCCCCCCCC-CcceeEEEEEeCCEEEEEeccCCCCC
Q 021952 150 -----------------GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARR 211 (305)
Q Consensus 150 -----------------~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~ 211 (305)
.......++.||+.+ ++|+.+ +..|. ++++ ++++..++++.++-|+-.++.
T Consensus 174 ~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~--n~W~~~--------G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGL 242 (381)
T COG3055 174 KEAVDKIIAHYFDKKAEDYFFNKEVLSYDPST--NQWRNL--------GENPFYGNAG-SAVVIKGNKLTLINGEIKPGL 242 (381)
T ss_pred HHHHHHHHHHHhCCCHHHhccccccccccccc--chhhhc--------CcCcccCccC-cceeecCCeEEEEcceecCCc
Confidence 011234688999999 999998 45554 5565 455557888999999999998
Q ss_pred ccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCC-c-eeeeeeeCCCcEEEEEcCccCCC--------
Q 021952 212 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR-S-FHRACPDYSGRYLYVFGGMVDGL-------- 281 (305)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r-~-~~~~~~~~~~~~i~v~GG~~~~~-------- 281 (305)
+...+++++.... ..+|+.+...+..+..- . ..++..-...+.+++.||..=+.
T Consensus 243 Rt~~~k~~~~~~~----------------~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~G 306 (381)
T COG3055 243 RTAEVKQADFGGD----------------NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNG 306 (381)
T ss_pred cccceeEEEeccC----------------ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhc
Confidence 8999999998755 78899885422111110 1 11222223457899999864332
Q ss_pred -cccCCCccccccCceeeEe
Q 021952 282 -VQPADTSGLRFDGRLLLVE 300 (305)
Q Consensus 282 -~~~~~~~~~~~~~d~~~~~ 300 (305)
...++-....+.+++|.||
T Consensus 307 k~~AH~Gl~K~w~~~Vy~~d 326 (381)
T COG3055 307 KFYAHEGLSKSWNSEVYIFD 326 (381)
T ss_pred ccccccchhhhhhceEEEEc
Confidence 2223333446788999887
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-15 Score=132.37 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=149.3
Q ss_pred ccceEEecccCC-------CCCCCCCCceeEEec-CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCC
Q 021952 56 ITLSWRLLDVGS-------IAPPARGAHAACCID-NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPP 126 (305)
Q Consensus 56 ~~~~W~~~~~~~-------~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~ 126 (305)
.+..|.++.... ..|..|.+|.++... ++++|++||.+.. ..+.|.|.|....+ +|+.+- .+..|.
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~----~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKEN----QWTCINRDTEGPG 311 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcc----eeEEeecCCCCCc
Confidence 466788877543 568889999999874 3699999998544 35899999999999 999998 556899
Q ss_pred ccCCCeeEEEe-CCEEEEEcccCCC-----CcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCE-
Q 021952 127 ARSGHSLTRIG-GNRTVLFGGRGVG-----YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGR- 199 (305)
Q Consensus 127 ~r~~~~~~~~~-~~~i~v~GG~~~~-----~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~- 199 (305)
.|++|-|+... ..++|+.|-+-.. ...-+|+|+||+.+ +.|.-++++.. ...-|..-+.|.+++ .+++
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~--~~W~~ls~dt~--~dGGP~~vfDHqM~V-d~~k~ 386 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDT--NTWMLLSEDTA--ADGGPKLVFDHQMCV-DSEKH 386 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCC--ceeEEeccccc--ccCCcceeecceeeE-ecCcc
Confidence 99999998863 3489999976211 12346899999999 99999974321 123477788899988 4555
Q ss_pred -EEEEeccCCC--CCccCcEEEEecCCCCccccccccccccccccccceeeccc-------CcCCCCCceeeeeeeCCCc
Q 021952 200 -VLIYGGEDSA--RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE-------GYKPNCRSFHRACPDYSGR 269 (305)
Q Consensus 200 -l~v~GG~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~-------~~~p~~r~~~~~~~~~~~~ 269 (305)
+||+||..-. ......+|.||.. ...|+.+... -+....|.+|.+-.+..++
T Consensus 387 ~iyVfGGr~~~~~e~~f~GLYaf~~~------------------~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~ 448 (723)
T KOG2437|consen 387 MIYVFGGRILTCNEPQFSGLYAFNCQ------------------CQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNR 448 (723)
T ss_pred eEEEecCeeccCCCccccceEEEecC------------------CccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCC
Confidence 9999999532 2456789999998 7889876431 1344578899998888888
Q ss_pred EEEEEcCccC
Q 021952 270 YLYVFGGMVD 279 (305)
Q Consensus 270 ~i~v~GG~~~ 279 (305)
.++++||.+.
T Consensus 449 ~ly~fggq~s 458 (723)
T KOG2437|consen 449 CLYVFGGQRS 458 (723)
T ss_pred eEEeccCccc
Confidence 9999999753
No 31
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.23 E-value=1.9e-09 Score=88.38 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=120.2
Q ss_pred CCCCCcceeEEEEC---C---EEEEEccccCCCCCcccceeecccccc-cccccceEEecccCCCCCCCCCCceeEEec-
Q 021952 11 IPSGRFGHTCVVIG---D---CLVLFGGINDRGNRHNDTWIGQIACHE-NLGITLSWRLLDVGSIAPPARGAHAACCID- 82 (305)
Q Consensus 11 ~p~~r~~~~~~~~~---~---~lyv~GG~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~- 82 (305)
.|+.|.-+.+..-+ + ..+|.||++.++..++.+|.+.+.... +...+...+.....++.|.+|++|++-++.
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 46666554443311 1 266789999999989999999886554 333455666666778899999999998873
Q ss_pred --CCEEEEEeccCC--CCCc-----------cCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEccc
Q 021952 83 --NRKMVIHAGIGL--YGLR-----------LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGR 147 (305)
Q Consensus 83 --~~~lyv~GG~~~--~~~~-----------~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~ 147 (305)
....++|||.+. .+.+ .-.++.+|++.+ ..+.........+.+.|.+..- ++.+|++||+
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG----C~tah~lpEl~dG~SFHvslar-~D~VYilGGH 173 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG----CCTAHTLPELQDGQSFHVSLAR-NDCVYILGGH 173 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc----ccccccchhhcCCeEEEEEEec-CceEEEEccE
Confidence 346888999742 2221 235688888876 6665544456667788887777 5799999998
Q ss_pred CCC-CcccceeEEEEccc--c--ceeEEEeccccCCCCCCCCCCcceeEEEEE--eCCEEEEEeccCCCCCccC
Q 021952 148 GVG-YEVLNDVWFLDVYE--G--FFKWVQIPYELQNIPAGFSLPRVGHSATLI--LGGRVLIYGGEDSARRRKD 214 (305)
Q Consensus 148 ~~~-~~~~~~~~~~d~~~--~--~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~ 214 (305)
.-. +.....++++.++- + ..+.+. ++......+|++. ..+.++|+||+..+.+...
T Consensus 174 sl~sd~Rpp~l~rlkVdLllGSP~vsC~v-----------l~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm 236 (337)
T PF03089_consen 174 SLESDSRPPRLYRLKVDLLLGSPAVSCTV-----------LQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRM 236 (337)
T ss_pred EccCCCCCCcEEEEEEeecCCCceeEEEE-----------CCCCceEeeeeEeecCCCceEEEecccccceeee
Confidence 432 22344566665433 1 112222 2333344444432 4577999999976655443
No 32
>PLN02772 guanylate kinase
Probab=99.18 E-value=1.4e-10 Score=101.48 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=79.2
Q ss_pred CCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEec
Q 021952 12 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAG 91 (305)
Q Consensus 12 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG 91 (305)
+.|+..|+++.+++++||+||.++.++..+++|+||. .+.+|......|..|.||.+|++|.+++++|+++++
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~-------~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDK-------ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEEC-------CCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 5599999999999999999999886657899999999 899999999999999999999999998889999998
Q ss_pred cCCCCCccCcEEEEeccC
Q 021952 92 IGLYGLRLGDTWVLELSE 109 (305)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~ 109 (305)
.++. -+++|.+..+|
T Consensus 95 ~~~~---~~~~w~l~~~t 109 (398)
T PLN02772 95 GSAP---DDSIWFLEVDT 109 (398)
T ss_pred CCCC---ccceEEEEcCC
Confidence 6544 37899999988
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.18 E-value=8e-11 Score=73.19 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=44.6
Q ss_pred CCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCcc
Q 021952 72 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPAR 128 (305)
Q Consensus 72 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r 128 (305)
||.+|+++++++ +||++||.......++++++||+.++ +|++++ ++|.||
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~--~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETN----TWEQLP--PMPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCC----cEEECC--CCCCCC
Confidence 688999999988 99999998664677999999999999 999998 788776
No 34
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.16 E-value=5.1e-09 Score=85.92 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=110.0
Q ss_pred EEEEEeccCCCCCccCcEEEEeccCCCC----CcCeEEcc-cCCCCCccCCCeeEEE---eCCEEEEEcccCCC--Cc--
Q 021952 85 KMVIHAGIGLYGLRLGDTWVLELSENFC----FGSWQQLV-THPSPPARSGHSLTRI---GGNRTVLFGGRGVG--YE-- 152 (305)
Q Consensus 85 ~lyv~GG~~~~~~~~~~~~~~d~~~~~~----~~~W~~~~-~~~~p~~r~~~~~~~~---~~~~i~v~GG~~~~--~~-- 152 (305)
..++.||.+++...++.+|+...+...+ ++.+..-. .+..|.+|++|++.++ ++...++|||+.-. .+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 4667899999988899999998887633 33343333 6789999999998887 34458999998311 11
Q ss_pred ---------ccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC-ccCcEEEEecC
Q 021952 153 ---------VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR-RKDDFWVLDTK 222 (305)
Q Consensus 153 ---------~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~d~~ 222 (305)
....++.+|++. +..+.- ..+.+......|.+.. .++.+|++||..-... .-..++++..+
T Consensus 120 TenWNsVvDC~P~VfLiDleF--GC~tah------~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEF--GCCTAH------TLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred hhhcceeccCCCeEEEEeccc--cccccc------cchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEe
Confidence 123588999998 766655 2346666778888876 8999999999965433 34567776544
Q ss_pred CCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCC-CcEEEEEcCccC
Q 021952 223 AIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYS-GRYLYVFGGMVD 279 (305)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~~~i~v~GG~~~ 279 (305)
-.. -.-+-.... ++......+|++... .+..+|+||+..
T Consensus 191 Lll---------------GSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 191 LLL---------------GSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred ecC---------------CCceeEEEE---CCCCceEeeeeEeecCCCceEEEecccc
Confidence 110 001111111 444555555554433 368999999843
No 35
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.7e-10 Score=71.71 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=44.3
Q ss_pred ccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCc
Q 021952 127 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR 187 (305)
Q Consensus 127 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r 187 (305)
||.+|+++.+ +++|||+||........+++++||+++ ++|++++ ++|.+|
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~--------~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQLP--------PMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCC--CcEEECC--------CCCCCC
Confidence 6899999999 589999999975577899999999999 9999994 888776
No 36
>PLN02772 guanylate kinase
Probab=99.11 E-value=6e-10 Score=97.49 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=76.5
Q ss_pred CCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccC
Q 021952 70 PPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRG 148 (305)
Q Consensus 70 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~ 148 (305)
+.|+..|+++.+++ ++||+||....+...+.+++||..++ +|.... .|..|.||.+|+++++++++|+|+++..
T Consensus 22 ~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~----~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITN----NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCC----cEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999998 99999997665556899999999998 999998 8999999999999999989999999764
Q ss_pred CCCcccceeEEEEccc
Q 021952 149 VGYEVLNDVWFLDVYE 164 (305)
Q Consensus 149 ~~~~~~~~~~~~d~~~ 164 (305)
... +++|.+.+.+
T Consensus 97 ~~~---~~~w~l~~~t 109 (398)
T PLN02772 97 APD---DSIWFLEVDT 109 (398)
T ss_pred CCc---cceEEEEcCC
Confidence 332 6799999888
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.05 E-value=4.5e-10 Score=69.38 Aligned_cols=47 Identities=40% Similarity=0.780 Sum_probs=41.4
Q ss_pred CEEEEEeccC-CCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEE
Q 021952 84 RKMVIHAGIG-LYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI 136 (305)
Q Consensus 84 ~~lyv~GG~~-~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 136 (305)
++|||+||.. .....++++|+||++++ +|+++. ..|.+|++|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~----~W~~~~--~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTN----TWTRIG--DLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCC----EEEECC--CCCCCccceEEEEC
Confidence 4899999987 35577999999999998 999995 88999999999874
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.03 E-value=2.5e-10 Score=70.65 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=31.4
Q ss_pred CCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCC
Q 021952 72 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP 125 (305)
Q Consensus 72 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p 125 (305)
||.+|+++.+++++|||+||.+.++..++++|+||++++ +|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~----~W~~~~--~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN----TWTRLP--SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT----EEEE----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC----EEEECC--CCC
Confidence 699999999976699999999777678999999999999 999996 544
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.02 E-value=3.9e-10 Score=69.73 Aligned_cols=45 Identities=40% Similarity=0.809 Sum_probs=30.7
Q ss_pred ccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 127 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 127 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
||++|+++.+.+++||||||.......++++|+||+++ ++|+++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEECC
Confidence 69999999997789999999976567999999999999 9999993
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.01 E-value=1.1e-09 Score=67.67 Aligned_cols=47 Identities=43% Similarity=0.808 Sum_probs=41.9
Q ss_pred CCEEEEEcccC-CCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEE
Q 021952 138 GNRTVLFGGRG-VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL 194 (305)
Q Consensus 138 ~~~i~v~GG~~-~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~ 194 (305)
+++||||||.. .....++++|+||+.+ .+|+++ +++|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~--------~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI--------GDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC--------CCCCCCccceEEEE
Confidence 36899999997 4677899999999999 999998 58899999999876
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=4.7e-09 Score=64.77 Aligned_cols=45 Identities=33% Similarity=0.705 Sum_probs=39.7
Q ss_pred CCcceeEEEECCEEEEEccc--cCCCCCcccceeecccccccccccceEEeccc
Q 021952 14 GRFGHTCVVIGDCLVLFGGI--NDRGNRHNDTWIGQIACHENLGITLSWRLLDV 65 (305)
Q Consensus 14 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 65 (305)
||.+|++++++++|||+||. .......+++++||+ .+.+|+.++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~-------~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT-------ETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEEC-------CCCEEeecCC
Confidence 69999999999999999999 334567899999999 8999999875
No 42
>PF13854 Kelch_5: Kelch motif
Probab=98.87 E-value=3.4e-09 Score=62.97 Aligned_cols=38 Identities=37% Similarity=0.805 Sum_probs=34.9
Q ss_pred CCCCCcceeEEEECCEEEEEccccC-CCCCcccceeecc
Q 021952 11 IPSGRFGHTCVVIGDCLVLFGGIND-RGNRHNDTWIGQI 48 (305)
Q Consensus 11 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~ 48 (305)
+|.+|.+|+++.++++||||||... .....+|+|+||+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 5899999999999999999999984 6677899999998
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.84 E-value=4.3e-09 Score=64.42 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=39.5
Q ss_pred CCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 72 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 72 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
||..|+++++++ +||++||.......++++++||+.++ +|+.++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN----TWEELP 44 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT----EEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC----EEEEcC
Confidence 688999999998 99999998776678999999999999 999987
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=4.8e-09 Score=64.20 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEeccc
Q 021952 14 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDV 65 (305)
Q Consensus 14 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 65 (305)
||.+|++++++++||++||.......++++++||+ .+++|+.++.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDP-------ETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEET-------TTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeC-------CCCEEEEcCC
Confidence 69999999999999999999887778999999999 8999999874
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.80 E-value=1.3e-08 Score=60.49 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=35.2
Q ss_pred CCCCCCCceeEEecCCEEEEEeccCC-CCCccCcEEEEeccC
Q 021952 69 APPARGAHAACCIDNRKMVIHAGIGL-YGLRLGDTWVLELSE 109 (305)
Q Consensus 69 ~p~~r~~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~d~~~ 109 (305)
.|.+|.+|+++.+++ +||++||... +...++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999987 9999999873 667899999999876
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=2e-08 Score=61.94 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=38.6
Q ss_pred CCCCceeEEecCCEEEEEecc--CCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 72 ARGAHAACCIDNRKMVIHAGI--GLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 72 ~r~~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
||.+|++++.++ +||++||. ......++++++||+.++ +|+.++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~----~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN----QWTELS 46 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC----EEeecC
Confidence 688999999887 99999998 444467899999999999 999987
No 47
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=3.6e-07 Score=55.57 Aligned_cols=46 Identities=33% Similarity=0.537 Sum_probs=39.4
Q ss_pred EEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEe
Q 021952 85 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG 137 (305)
Q Consensus 85 ~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 137 (305)
+||++||... ....+++++||+.++ +|+.++ ++|.+|..|+++.++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~----~W~~~~--~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETN----KWTPLP--SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCC----eEccCC--CCCCccccceEEEeC
Confidence 4899999854 346889999999999 999998 889999999988773
No 48
>smart00612 Kelch Kelch domain.
Probab=98.28 E-value=1.4e-06 Score=52.85 Aligned_cols=45 Identities=29% Similarity=0.512 Sum_probs=38.2
Q ss_pred EEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEE
Q 021952 140 RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI 195 (305)
Q Consensus 140 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~ 195 (305)
+||++||.. .....+++++||+.+ ++|+.+ .++|.+|..|+++++
T Consensus 1 ~iyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~--------~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFD-GGQRLKSVEVYDPET--NKWTPL--------PSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCC-CCceeeeEEEECCCC--CeEccC--------CCCCCccccceEEEe
Confidence 489999985 356788999999999 999998 489999999988763
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.19 E-value=0.00022 Score=59.27 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=83.7
Q ss_pred ccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEE
Q 021952 56 ITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTR 135 (305)
Q Consensus 56 ~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~ 135 (305)
.+++++.+.... =.-+.+|+ ...++.++..||... + .+.+-.|++.+.-.+..|..... .+..+|-..+++.
T Consensus 54 ~tn~~rpl~v~t--d~FCSgg~--~L~dG~ll~tGG~~~-G--~~~ir~~~p~~~~~~~~w~e~~~-~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 54 NTNTFRPLTVQT--DTFCSGGA--FLPDGRLLQTGGDND-G--NKAIRIFTPCTSDGTCDWTESPN-DMQSGRWYPTATT 125 (243)
T ss_pred CCCcEEeccCCC--CCcccCcC--CCCCCCEEEeCCCCc-c--ccceEEEecCCCCCCCCceECcc-cccCCCccccceE
Confidence 788888877421 12233333 334458999999733 2 34577788776112347888762 3788999999999
Q ss_pred EeCCEEEEEcccCCCCcccceeEEEEcc-c---cceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC
Q 021952 136 IGGNRTVLFGGRGVGYEVLNDVWFLDVY-E---GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 211 (305)
Q Consensus 136 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~-~---~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 211 (305)
..+++++|+||... ..++|-+. . +...|..+. ......+...+=+ +.+.-+++||+++...
T Consensus 126 L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~----~~~~~~~~nlYP~-~~llPdG~lFi~an~~---- 190 (243)
T PF07250_consen 126 LPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLS----QTSDTLPNNLYPF-VHLLPDGNLFIFANRG---- 190 (243)
T ss_pred CCCCCEEEEeCcCC------CcccccCCccCCCCceeeecch----hhhccCccccCce-EEEcCCCCEEEEEcCC----
Confidence 99999999999851 12233232 1 012233231 0111233333333 3344789999999863
Q ss_pred ccCcEEEEecC
Q 021952 212 RKDDFWVLDTK 222 (305)
Q Consensus 212 ~~~~~~~~d~~ 222 (305)
-.+||.+
T Consensus 191 ----s~i~d~~ 197 (243)
T PF07250_consen 191 ----SIIYDYK 197 (243)
T ss_pred ----cEEEeCC
Confidence 3678887
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.36 E-value=0.0024 Score=53.14 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=66.8
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccc--cceeEEEeccccC
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE--GFFKWVQIPYELQ 177 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~ 177 (305)
....+||+.++ +++.+. .+.--++.+.+...++++++.||...+ ...+..|++.. +...|....
T Consensus 46 a~s~~yD~~tn----~~rpl~---v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~---- 111 (243)
T PF07250_consen 46 AHSVEYDPNTN----TFRPLT---VQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP---- 111 (243)
T ss_pred EEEEEEecCCC----cEEecc---CCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc----
Confidence 34568999999 888875 233445555556678999999998542 34466677642 225788774
Q ss_pred CCCCCCCCCcceeEEEEEeCCEEEEEeccCC
Q 021952 178 NIPAGFSLPRVGHSATLILGGRVLIYGGEDS 208 (305)
Q Consensus 178 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 208 (305)
..+..+|-..++..+-+++++|+||...
T Consensus 112 ---~~m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 112 ---NDMQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred ---ccccCCCccccceECCCCCEEEEeCcCC
Confidence 3588899999998888999999999974
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.31 E-value=0.074 Score=44.15 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=81.6
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCc-eeEEec----CCEEEEEeccCCCCCccCcEEEEeccCCCCCcC
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAH-AACCID----NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGS 115 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~-~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~ 115 (305)
..+++.|+ .|.+|..++.....+.....+ .....+ +=|++.+.....+ .....+.+|++.++ .
T Consensus 14 ~~~~V~NP-------~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~----~ 81 (230)
T TIGR01640 14 KRLVVWNP-------STGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSN----S 81 (230)
T ss_pred CcEEEECC-------CCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCC----C
Confidence 35778888 899999987432110001111 122221 1134445432111 13457899999998 9
Q ss_pred eEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEE-eccccCCCCCCCCCCcc---eeE
Q 021952 116 WQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQNIPAGFSLPRV---GHS 191 (305)
Q Consensus 116 W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~~~~~~p~~r~---~~~ 191 (305)
|+.+.... +........+.+ ++.+|-+.-.... .....+..||+.+ .+|+. ++ +|..+. ...
T Consensus 82 Wr~~~~~~-~~~~~~~~~v~~-~G~lyw~~~~~~~-~~~~~IvsFDl~~--E~f~~~i~---------~P~~~~~~~~~~ 147 (230)
T TIGR01640 82 WRTIECSP-PHHPLKSRGVCI-NGVLYYLAYTLKT-NPDYFIVSFDVSS--ERFKEFIP---------LPCGNSDSVDYL 147 (230)
T ss_pred ccccccCC-CCccccCCeEEE-CCEEEEEEEECCC-CCcEEEEEEEccc--ceEeeeee---------cCccccccccce
Confidence 99987211 111112225566 5788877643211 1112699999999 99995 63 232221 112
Q ss_pred EEEEeCCEEEEEeccCCCCCccCcEEEEec
Q 021952 192 ATLILGGRVLIYGGEDSARRRKDDFWVLDT 221 (305)
Q Consensus 192 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~ 221 (305)
.....+++|.++...... ..-+||+++-
T Consensus 148 ~L~~~~G~L~~v~~~~~~--~~~~IWvl~d 175 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDT--NNFDLWVLND 175 (230)
T ss_pred EEEEECCEEEEEEecCCC--CcEEEEEECC
Confidence 222356888777654221 1257888863
No 52
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.98 E-value=0.045 Score=46.75 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=70.2
Q ss_pred Eec-cCCCCC-ccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccc
Q 021952 89 HAG-IGLYGL-RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF 166 (305)
Q Consensus 89 ~GG-~~~~~~-~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~ 166 (305)
+|| ....+. .-..+-.||+.+. +|..+..+ ..+. -..+...+++++|+.|-..........+..||..+
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~----qW~~~g~~--i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~-- 73 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNS----QWSSPGNG--ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN-- 73 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCC----EeecCCCC--ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--
Confidence 444 444443 3567889999998 99998732 2222 23344455678888887643333455699999999
Q ss_pred eeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEe
Q 021952 167 FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD 220 (305)
Q Consensus 167 ~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d 220 (305)
.+|+.+... ....+|.+...........+.+++.|.. ..+ ..-+..||
T Consensus 74 ~~w~~~~~~---~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d 121 (281)
T PF12768_consen 74 QTWSSLGGG---SSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD 121 (281)
T ss_pred CeeeecCCc---ccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc
Confidence 999998510 0123555543322222244568888776 222 34577777
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.32 E-value=0.57 Score=42.29 Aligned_cols=155 Identities=11% Similarity=0.007 Sum_probs=82.7
Q ss_pred eEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCC-----CCCCCceeEEecCCEEEEEeccC
Q 021952 19 TCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP-----PARGAHAACCIDNRKMVIHAGIG 93 (305)
Q Consensus 19 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p-----~~r~~~~~~~~~~~~lyv~GG~~ 93 (305)
+.++.++++|+.... ..++++|.. .-+..|+.-....... .++.. +..++.++++|+.+.
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~v~v~~~-- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDAD-----TGKEIWSVDLSEKDGWFSKNKSALLS-GGVTVAGGKVYIGSE-- 128 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECC-----CCcEeeEEcCCCcccccccccccccc-cccEEECCEEEEEcC--
Confidence 446778999987532 257788872 1255687533211000 11212 223334447887432
Q ss_pred CCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 94 LYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
...++.+|.++. ...|+.-..+ +. ..+.++. ++.+|+..+. ..++.||.+++...|+.-.
T Consensus 129 -----~g~l~ald~~tG--~~~W~~~~~~----~~-~ssP~v~-~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 129 -----KGQVYALNAEDG--EVAWQTKVAG----EA-LSRPVVS-DGLVLVHTSN-------GMLQALNESDGAVKWTVNL 188 (394)
T ss_pred -----CCEEEEEECCCC--CCcccccCCC----ce-ecCCEEE-CCEEEEECCC-------CEEEEEEccCCCEeeeecC
Confidence 135899998874 3578664311 11 1223344 5677764332 3599999999888898752
Q ss_pred cccCCCCCCCCC--CcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 174 YELQNIPAGFSL--PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 174 ~~~~~~~~~~p~--~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
..|. .+...+.++ .++.+|+..+ + ..++.+|..+.
T Consensus 189 --------~~~~~~~~~~~sP~v-~~~~v~~~~~-~------g~v~a~d~~~G 225 (394)
T PRK11138 189 --------DVPSLTLRGESAPAT-AFGGAIVGGD-N------GRVSAVLMEQG 225 (394)
T ss_pred --------CCCcccccCCCCCEE-ECCEEEEEcC-C------CEEEEEEccCC
Confidence 1121 111222333 4566655332 2 24788888765
No 54
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.02 E-value=0.15 Score=43.55 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred EEEcccCCCCc-ccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEe
Q 021952 142 VLFGGRGVGYE-VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD 220 (305)
Q Consensus 142 ~v~GG~~~~~~-~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d 220 (305)
||-|-+..... ....+..||+.+ .+|..+. .--.... .......+++|||.|-....+.....+-.||
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g--------~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG--------NGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCC--CEeecCC--------CCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 44444443332 466799999999 9999984 2222211 1222225788888887765543355577888
Q ss_pred cCCCCccccccccccccccccccceeeccc--CcCCCCCceeeeeeeCCCcEEEEEcCc
Q 021952 221 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAE--GYKPNCRSFHRACPDYSGRYLYVFGGM 277 (305)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~--~~~p~~r~~~~~~~~~~~~~i~v~GG~ 277 (305)
.+ +.+|+.+... ...|.+...... .......+++.|..
T Consensus 71 ~~------------------~~~w~~~~~~~s~~ipgpv~a~~~-~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 71 FK------------------NQTWSSLGGGSSNSIPGPVTALTF-ISNDGSNFWVAGRS 110 (281)
T ss_pred cC------------------CCeeeecCCcccccCCCcEEEEEe-eccCCceEEEecee
Confidence 88 8899888652 234544321211 21223467777655
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.21 E-value=2.3 Score=38.42 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=65.7
Q ss_pred CcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCC
Q 021952 15 RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGL 94 (305)
Q Consensus 15 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~ 94 (305)
+...+.++.++++|+.+ . ...++++|.. .-+..|+.-.. .+. ..+-++.+ +.+|+..+
T Consensus 111 ~~~~~~~v~~~~v~v~~-~------~g~l~ald~~-----tG~~~W~~~~~-----~~~-~ssP~v~~-~~v~v~~~--- 168 (394)
T PRK11138 111 LLSGGVTVAGGKVYIGS-E------KGQVYALNAE-----DGEVAWQTKVA-----GEA-LSRPVVSD-GLVLVHTS--- 168 (394)
T ss_pred ccccccEEECCEEEEEc-C------CCEEEEEECC-----CCCCcccccCC-----Cce-ecCCEEEC-CEEEEECC---
Confidence 33445667788888643 2 2357888871 12456876321 111 11223334 47777432
Q ss_pred CCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEe
Q 021952 95 YGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 95 ~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 172 (305)
...++.+|.+++ ...|+.-...+....+...+.++. ++.+|+..+. ..++.+|.+++...|+.-
T Consensus 169 ----~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 169 ----NGMLQALNESDG--AVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDN-------GRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred ----CCEEEEEEccCC--CEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCC-------CEEEEEEccCChhhheec
Confidence 135899999875 346877542111111222334444 4566664332 248889998877789753
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.01 E-value=1.7 Score=35.92 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=74.9
Q ss_pred ceEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEe-cccCCCCCCCCCCceeEEe
Q 021952 3 KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL-LDVGSIAPPARGAHAACCI 81 (305)
Q Consensus 3 ~W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~~~~p~~r~~~~~~~~ 81 (305)
.|+++...+|........+.+++.+|-+.-.... .....+..||+ .+.+|+. ++.+............+..
T Consensus 81 ~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl-------~~E~f~~~i~~P~~~~~~~~~~~L~~~ 152 (230)
T TIGR01640 81 SWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDV-------SSERFKEFIPLPCGNSDSVDYLSLINY 152 (230)
T ss_pred CccccccCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEc-------ccceEeeeeecCccccccccceEEEEE
Confidence 5888864333322222366789998877643221 11125888999 7888994 5522100001112334445
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEe-ccCCCCCcCeEEcc-cCCCCCccC---CCeeEEEeCCEEEEEcccCCCCcccce
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLE-LSENFCFGSWQQLV-THPSPPARS---GHSLTRIGGNRTVLFGGRGVGYEVLND 156 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d-~~~~~~~~~W~~~~-~~~~p~~r~---~~~~~~~~~~~i~v~GG~~~~~~~~~~ 156 (305)
++ +|.++...... ..-++|+.+ ...+ +|++.- ....+.+.. ........+++|++.-... ...-
T Consensus 153 ~G-~L~~v~~~~~~--~~~~IWvl~d~~~~----~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~----~~~~ 221 (230)
T TIGR01640 153 KG-KLAVLKQKKDT--NNFDLWVLNDAGKQ----EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE----NPFY 221 (230)
T ss_pred CC-EEEEEEecCCC--CcEEEEEECCCCCC----ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC----CceE
Confidence 54 78777653211 124788886 3344 799865 211112222 1234455567887766431 0113
Q ss_pred eEEEEccc
Q 021952 157 VWFLDVYE 164 (305)
Q Consensus 157 ~~~~d~~~ 164 (305)
+..||+.+
T Consensus 222 ~~~y~~~~ 229 (230)
T TIGR01640 222 IFYYNVGE 229 (230)
T ss_pred EEEEeccC
Confidence 77888875
No 57
>PRK13684 Ycf48-like protein; Provisional
Probab=94.88 E-value=2.6 Score=37.25 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=78.6
Q ss_pred ccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEE-eccCCCCCcCeEEcccCCCCCccCCCeeE
Q 021952 56 ITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLT 134 (305)
Q Consensus 56 ~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~ 134 (305)
.-.+|+.+... ..-..+.+....++.++++|.. +. ++.- |.... +|+.+. .+..+.-.+++
T Consensus 160 gG~tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~---G~----i~~s~~~gg~----tW~~~~---~~~~~~l~~i~ 221 (334)
T PRK13684 160 GGKNWEALVED----AAGVVRNLRRSPDGKYVAVSSR---GN----FYSTWEPGQT----AWTPHQ---RNSSRRLQSMG 221 (334)
T ss_pred CCCCceeCcCC----CcceEEEEEECCCCeEEEEeCC---ce----EEEEcCCCCC----eEEEee---CCCcccceeee
Confidence 36789987632 2223344444455445544433 21 2222 22223 798885 23344555566
Q ss_pred EEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccC
Q 021952 135 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKD 214 (305)
Q Consensus 135 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 214 (305)
...++.++++|..+ ...+....+...|+.+. .+........++.....++.+|+.|..-
T Consensus 222 ~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~------~~~~~~~~~l~~v~~~~~~~~~~~G~~G------- 280 (334)
T PRK13684 222 FQPDGNLWMLARGG--------QIRFNDPDDLESWSKPI------IPEITNGYGYLDLAYRTPGEIWAGGGNG------- 280 (334)
T ss_pred EcCCCCEEEEecCC--------EEEEccCCCCCcccccc------CCccccccceeeEEEcCCCCEEEEcCCC-------
Confidence 66667888887543 22332222336899763 0100011112223332466788877541
Q ss_pred cEEEEecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCc
Q 021952 215 DFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 277 (305)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~ 277 (305)
.++.-... -..|+.+......| .....++.. .+++.++.|..
T Consensus 281 ~v~~S~d~------------------G~tW~~~~~~~~~~--~~~~~~~~~-~~~~~~~~G~~ 322 (334)
T PRK13684 281 TLLVSKDG------------------GKTWEKDPVGEEVP--SNFYKIVFL-DPEKGFVLGQR 322 (334)
T ss_pred eEEEeCCC------------------CCCCeECCcCCCCC--cceEEEEEe-CCCceEEECCC
Confidence 12322221 46899875322232 223344333 46688888864
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.76 E-value=1.8 Score=38.33 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=68.2
Q ss_pred ECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCc----
Q 021952 23 IGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLR---- 98 (305)
Q Consensus 23 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~---- 98 (305)
.+++|+..+.. ..+.+||. .+..-...+. ++.+...-.++.+++ +||++.........
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt-------~t~av~~~P~---l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDT-------DTRAVATGPR---LHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPD 136 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEEC-------CCCeEeccCC---CCCCCcceEEEEeCC-eEEEeeccCccccccCcc
Confidence 37888887544 24678998 6766665443 344555557777887 69999775222111
Q ss_pred cCcEEEE--ecc----CCCCCcCeEEcccCCCCCccCC-------CeeEEEeCCEEEE-EcccCCCCcccceeEEEEccc
Q 021952 99 LGDTWVL--ELS----ENFCFGSWQQLVTHPSPPARSG-------HSLTRIGGNRTVL-FGGRGVGYEVLNDVWFLDVYE 164 (305)
Q Consensus 99 ~~~~~~~--d~~----~~~~~~~W~~~~~~~~p~~r~~-------~~~~~~~~~~i~v-~GG~~~~~~~~~~~~~~d~~~ 164 (305)
...++.+ +.. .....-.|+.++ ++|..+.. .+-+++++..|+| .-+.. ...+.||+.+
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP--~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~ 208 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLP--PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTES 208 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCC--CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCC
Confidence 0133333 310 111223566665 33332221 1223334567777 33321 2388999999
Q ss_pred cceeEEEe
Q 021952 165 GFFKWVQI 172 (305)
Q Consensus 165 ~~~~W~~~ 172 (305)
.+|+++
T Consensus 209 --~~W~~~ 214 (342)
T PF07893_consen 209 --HEWRKH 214 (342)
T ss_pred --cceeec
Confidence 999999
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.85 E-value=4.1 Score=36.09 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=37.4
Q ss_pred eEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEccc
Q 021952 78 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGR 147 (305)
Q Consensus 78 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~ 147 (305)
++.+.+++|+..+.. ....+||.++. .-...+ .++.+.....++.++ +++|++...
T Consensus 71 F~al~gskIv~~d~~-------~~t~vyDt~t~----av~~~P--~l~~pk~~pisv~VG-~~LY~m~~~ 126 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS-------GRTLVYDTDTR----AVATGP--RLHSPKRCPISVSVG-DKLYAMDRS 126 (342)
T ss_pred EEEecCCeEEEEcCC-------CCeEEEECCCC----eEeccC--CCCCCCcceEEEEeC-CeEEEeecc
Confidence 333445588888654 34899999997 555555 455555566677775 679999876
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.36 E-value=5.6 Score=35.53 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=63.4
Q ss_pred eeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCC
Q 021952 18 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL 97 (305)
Q Consensus 18 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~ 97 (305)
.+.++.++++|+.+.. ..++++|.. .-+..|+.-... . .. +..++.++.+|+.+. +
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~-----tG~~~W~~~~~~-----~-~~-~~p~v~~~~v~v~~~---~-- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAE-----TGKRLWRVDLDE-----R-LS-GGVGADGGLVFVGTE---K-- 114 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEcc-----CCcEeeeecCCC-----C-cc-cceEEcCCEEEEEcC---C--
Confidence 3456668888875421 358888871 124568753211 1 11 122344547776432 1
Q ss_pred ccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEe
Q 021952 98 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 98 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 172 (305)
..++.+|.+++ ...|+.-..+ .. ..+.+.. ++.+|+..+. ..++.+|.+++...|+.-
T Consensus 115 --g~l~ald~~tG--~~~W~~~~~~----~~-~~~p~v~-~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 115 --GEVIALDAEDG--KELWRAKLSS----EV-LSPPLVA-NGLVVVRTND-------GRLTALDAATGERLWTYS 172 (377)
T ss_pred --CEEEEEECCCC--cEeeeeccCc----ee-ecCCEEE-CCEEEEECCC-------CeEEEEEcCCCceeeEEc
Confidence 35899998764 3468654311 11 1223333 5677765432 348999998877789865
No 61
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=93.33 E-value=4.5 Score=34.28 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=77.4
Q ss_pred EecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCC-CCccCCC-eeEEEeCCEEEEEcccCCCCccccee
Q 021952 80 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS-PPARSGH-SLTRIGGNRTVLFGGRGVGYEVLNDV 157 (305)
Q Consensus 80 ~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~-p~~r~~~-~~~~~~~~~i~v~GG~~~~~~~~~~~ 157 (305)
...++.+++.. .............+..+.+ .+|+... .. ......+ +.+...++.++++--.. ... .+
T Consensus 115 ~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G---~tW~~~~--~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~ 184 (275)
T PF13088_consen 115 QLPDGRLIAPY-YHESGGSFSAFVYYSDDGG---KTWSSGS--PIPDGQGECEPSIVELPDGRLLAVFRTE-GND---DI 184 (275)
T ss_dssp EECTTEEEEEE-EEESSCEEEEEEEEESSTT---SSEEEEE--ECECSEEEEEEEEEEETTSEEEEEEEEC-SST---EE
T ss_pred EecCCCEEEEE-eeccccCcceEEEEeCCCC---ceeeccc--cccccCCcceeEEEECCCCcEEEEEEcc-CCC---cE
Confidence 33455777762 1111122334455555554 4798886 22 2223333 33344567888775432 111 34
Q ss_pred EEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCcccccccccccc
Q 021952 158 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR 237 (305)
Q Consensus 158 ~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 237 (305)
+..--..+..+|+... ...+|.+......+...++.++++..... . ...+.++--...
T Consensus 185 ~~~~S~D~G~TWs~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--r~~l~l~~S~D~------------- 242 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQ------PTNLPNPNSSISLVRLSDGRLLLVYNNPD-G--RSNLSLYVSEDG------------- 242 (275)
T ss_dssp EEEEESSTTSS-EEEE------EEECSSCCEEEEEEECTTSEEEEEEECSS-T--SEEEEEEEECTT-------------
T ss_pred EEEEECCCCCcCCCce------ecccCcccCCceEEEcCCCCEEEEEECCC-C--CCceEEEEEeCC-------------
Confidence 4433333457899863 12455555555544445678887777311 1 222333222211
Q ss_pred ccccccceeecccCcCCCCCceeeeeeeCCCcEEEE
Q 021952 238 GLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV 273 (305)
Q Consensus 238 ~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v 273 (305)
..+|+........+...+.....+...+++|+|
T Consensus 243 ---g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 243 ---GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ---CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ---CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 678987654333333445555555444567765
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.65 E-value=4.9 Score=32.98 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeE
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 158 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 158 (305)
....++.+|+..+ ...++.+|..++ ...|+.-. +. +........ ++.+|+.... +.++
T Consensus 32 ~~~~~~~v~~~~~-------~~~l~~~d~~tG--~~~W~~~~----~~-~~~~~~~~~-~~~v~v~~~~-------~~l~ 89 (238)
T PF13360_consen 32 AVPDGGRVYVASG-------DGNLYALDAKTG--KVLWRFDL----PG-PISGAPVVD-GGRVYVGTSD-------GSLY 89 (238)
T ss_dssp EEEETTEEEEEET-------TSEEEEEETTTS--EEEEEEEC----SS-CGGSGEEEE-TTEEEEEETT-------SEEE
T ss_pred EEEeCCEEEEEcC-------CCEEEEEECCCC--CEEEEeec----cc-cccceeeec-ccccccccce-------eeeE
Confidence 4435558888732 346899998775 34576654 11 111123344 6788877522 2699
Q ss_pred EEEccccceeEE-EeccccCCCCCCCCCCc-ceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 159 FLDVYEGFFKWV-QIPYELQNIPAGFSLPR-VGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 159 ~~d~~~~~~~W~-~~~~~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
.+|..++...|+ ... ..+... .......+.++.+|+... ...++.+|+++.
T Consensus 90 ~~d~~tG~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG 142 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLT--------SSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTG 142 (238)
T ss_dssp EEETTTSCEEEEEEE---------SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTT
T ss_pred ecccCCcceeeeeccc--------cccccccccccCceEecCEEEEEec-------cCcEEEEecCCC
Confidence 999999888999 453 112221 122222325666666553 234899999877
No 63
>PRK13684 Ycf48-like protein; Provisional
Probab=92.47 E-value=7.2 Score=34.43 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=60.0
Q ss_pred cceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEE-eccCCCCCcCeEEcccCCCCCccCCCeeEE
Q 021952 57 TLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLTR 135 (305)
Q Consensus 57 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~ 135 (305)
..+|+.+.. +..+.-+++....++.++++|.. + ..++ ..+.. -.|+.+..........-++++.
T Consensus 203 g~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~---G-----~~~~~s~d~G---~sW~~~~~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 203 QTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARG---G-----QIRFNDPDDL---ESWSKPIIPEITNGYGYLDLAY 267 (334)
T ss_pred CCeEEEeeC----CCcccceeeeEcCCCCEEEEecC---C-----EEEEccCCCC---CccccccCCccccccceeeEEE
Confidence 467988753 33444555555555578888753 2 1223 12222 3898764211111112233444
Q ss_pred EeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEecc
Q 021952 136 IGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 206 (305)
Q Consensus 136 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 206 (305)
..++.+++.|..+. ++.-. .+..+|+.+. .....| ......+...+++.|+.|..
T Consensus 268 ~~~~~~~~~G~~G~-------v~~S~--d~G~tW~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 268 RTPGEIWAGGGNGT-------LLVSK--DGGKTWEKDP-----VGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cCCCCEEEEcCCCe-------EEEeC--CCCCCCeECC-----cCCCCC--cceEEEEEeCCCceEEECCC
Confidence 54567888876531 23222 2237899883 112233 22333433367788887764
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.99 E-value=6 Score=32.46 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=82.9
Q ss_pred EEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCcc
Q 021952 20 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 99 (305)
Q Consensus 20 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 99 (305)
.+..++++|+.. ....++++|.. .-+..|+.-. . .+. .......+ +.+|+....
T Consensus 32 ~~~~~~~v~~~~-------~~~~l~~~d~~-----tG~~~W~~~~-~----~~~-~~~~~~~~-~~v~v~~~~------- 85 (238)
T PF13360_consen 32 AVPDGGRVYVAS-------GDGNLYALDAK-----TGKVLWRFDL-P----GPI-SGAPVVDG-GRVYVGTSD------- 85 (238)
T ss_dssp EEEETTEEEEEE-------TTSEEEEEETT-----TSEEEEEEEC-S----SCG-GSGEEEET-TEEEEEETT-------
T ss_pred EEEeCCEEEEEc-------CCCEEEEEECC-----CCCEEEEeec-c----ccc-cceeeecc-cccccccce-------
Confidence 344688888873 13478889971 1345677633 1 111 11133344 488877631
Q ss_pred CcEEEEeccCCCCCcCeEE-cccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCC
Q 021952 100 GDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 178 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~ 178 (305)
+.++.+|..+. ...|+. ... ..+.+........+.++.+|+.... ..++.+|++++...|+.-.
T Consensus 86 ~~l~~~d~~tG--~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~----- 150 (238)
T PF13360_consen 86 GSLYALDAKTG--KVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPV----- 150 (238)
T ss_dssp SEEEEEETTTS--CEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEES-----
T ss_pred eeeEecccCCc--ceeeeecccc-ccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeec-----
Confidence 26899997764 467984 432 1222222223333335566665431 3599999999778898762
Q ss_pred CCCCCCCCcc-------eeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 179 IPAGFSLPRV-------GHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 179 ~~~~~p~~r~-------~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
..+.... ..+..++.++.+|+..+... +..+|.++.
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg 193 (238)
T PF13360_consen 151 ---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------VVAVDLATG 193 (238)
T ss_dssp ---STT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------EEEEETTTT
T ss_pred ---CCCCCCcceeeecccccceEEECCEEEEEcCCCe-------EEEEECCCC
Confidence 1211100 11222335677777765431 566788854
No 65
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.84 E-value=11 Score=35.20 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=67.2
Q ss_pred cceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCC-CCCCC-CCCceeEEecCCEEEEEeccC
Q 021952 16 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS-IAPPA-RGAHAACCIDNRKMVIHAGIG 93 (305)
Q Consensus 16 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~p~~-r~~~~~~~~~~~~lyv~GG~~ 93 (305)
...+.++.++++|+.... ..++.+|.. .-+..|+.-.... ....+ .........+++++|+...
T Consensus 53 ~~~sPvv~~g~vy~~~~~-------g~l~AlD~~-----tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-- 118 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH-------SALFALDAA-----TGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-- 118 (488)
T ss_pred cccCCEEECCEEEEeCCC-------CcEEEEECC-----CChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--
Confidence 334556778888875432 357777771 1245587533211 00001 0111122234247776332
Q ss_pred CCCCccCcEEEEeccCCCCCcCeEEcccCCC-CCccCCCeeEEEeCCEEEEEcccCCCC---cccceeEEEEccccceeE
Q 021952 94 LYGLRLGDTWVLELSENFCFGSWQQLVTHPS-PPARSGHSLTRIGGNRTVLFGGRGVGY---EVLNDVWFLDVYEGFFKW 169 (305)
Q Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~~d~~~~~~~W 169 (305)
...++.+|.++. ...|+.-..... +.-....+.++. ++.+| +|...... .....++.||.+++...|
T Consensus 119 -----~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 119 -----DGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred -----CCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceee
Confidence 235889998874 356876541110 111122334445 45555 44321111 123568999999988899
Q ss_pred EEe
Q 021952 170 VQI 172 (305)
Q Consensus 170 ~~~ 172 (305)
+.-
T Consensus 190 ~~~ 192 (488)
T cd00216 190 RFY 192 (488)
T ss_pred Eee
Confidence 764
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.63 E-value=7.1 Score=35.32 Aligned_cols=109 Identities=13% Similarity=0.157 Sum_probs=58.7
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d 161 (305)
...+.+.+|++. .-.+|..|-++|+ .-+.+.....| .. +++...++. .++++|+. .-++.||
T Consensus 224 ~~plllvaG~d~----~lrifqvDGk~N~---~lqS~~l~~fP--i~--~a~f~p~G~~~i~~s~rr------ky~ysyD 286 (514)
T KOG2055|consen 224 TAPLLLVAGLDG----TLRIFQVDGKVNP---KLQSIHLEKFP--IQ--KAEFAPNGHSVIFTSGRR------KYLYSYD 286 (514)
T ss_pred CCceEEEecCCC----cEEEEEecCccCh---hheeeeeccCc--cc--eeeecCCCceEEEecccc------eEEEEee
Confidence 346888899743 3357777777771 11112111222 22 222222344 77777763 2489999
Q ss_pred ccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 162 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 162 ~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
+.+ .+-+++. .....+ .+..+.-.+..++.++++-|..+. |+.+..+
T Consensus 287 le~--ak~~k~~-----~~~g~e-~~~~e~FeVShd~~fia~~G~~G~------I~lLhak 333 (514)
T KOG2055|consen 287 LET--AKVTKLK-----PPYGVE-EKSMERFEVSHDSNFIAIAGNNGH------IHLLHAK 333 (514)
T ss_pred ccc--ccccccc-----CCCCcc-cchhheeEecCCCCeEEEcccCce------EEeehhh
Confidence 999 8888885 222333 122222222255667777776543 6666666
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.40 E-value=9.4 Score=34.58 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=58.4
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL 160 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~ 160 (305)
++...++++|.. .=+|.||+.+. +-+++. ....+ .++-+...+..++.++++-|... .|..+
T Consensus 268 ~G~~~i~~s~rr------ky~ysyDle~a----k~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G------~I~lL 330 (514)
T KOG2055|consen 268 NGHSVIFTSGRR------KYLYSYDLETA----KVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG------HIHLL 330 (514)
T ss_pred CCceEEEecccc------eEEEEeecccc----ccccccCCCCcc-cchhheeEecCCCCeEEEcccCc------eEEee
Confidence 343477777752 23899999997 888876 22222 23333322222445666666532 36677
Q ss_pred EccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCC
Q 021952 161 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 223 (305)
Q Consensus 161 d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~ 223 (305)
...+ +.|-.- -.++ ++....+.......|++.||.. +||++|+..
T Consensus 331 hakT--~eli~s--------~Kie-G~v~~~~fsSdsk~l~~~~~~G-------eV~v~nl~~ 375 (514)
T KOG2055|consen 331 HAKT--KELITS--------FKIE-GVVSDFTFSSDSKELLASGGTG-------EVYVWNLRQ 375 (514)
T ss_pred hhhh--hhhhhe--------eeec-cEEeeEEEecCCcEEEEEcCCc-------eEEEEecCC
Confidence 6666 666322 1111 2332223332445677777753 499999984
No 68
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=90.99 E-value=8.6 Score=32.31 Aligned_cols=232 Identities=12% Similarity=0.089 Sum_probs=92.2
Q ss_pred cceeEEEECCEEEEEcccc-CCCCCcccceeecccccccccccceEEecccCCCCCC-------CCCCceeEEecCCEEE
Q 021952 16 FGHTCVVIGDCLVLFGGIN-DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPP-------ARGAHAACCIDNRKMV 87 (305)
Q Consensus 16 ~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~~ly 87 (305)
...+|-+++++||.+=-.. -.+..+.....++-..- ....|+.-.... .|. ...-|+.|.+++ .=|
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF----~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~-~~f 149 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMF----HDSPWRITELGT-IASFTSAGVAVTELHSFATIDD-NQF 149 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-S----TTS--EEEEEES--TT--------SEEEEEEE-SS-S-E
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhccccc----ccCCceeeeccc-ccccccccceeeeeeeeeEecC-Cce
Confidence 3446678899988664321 11111222222222111 355687644222 222 445788888887 455
Q ss_pred EEeccCCCCCccCcEEEEeccCC---CCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccc
Q 021952 88 IHAGIGLYGLRLGDTWVLELSEN---FCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 164 (305)
Q Consensus 88 v~GG~~~~~~~~~~~~~~d~~~~---~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~ 164 (305)
.+|=...+ ..-.++-.+-.... +..+.=+.++ ..-.+-++--++..-++++|+.---......-+.+.+-+...
T Consensus 150 A~GyHnGD-~sPRe~G~~yfs~~~~sp~~~vrr~i~--sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G 226 (367)
T PF12217_consen 150 AVGYHNGD-VSPRELGFLYFSDAFASPGVFVRRIIP--SEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNG 226 (367)
T ss_dssp EEEEEE-S-SSS-EEEEEEETTTTT-TT--EEEE----GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTT
T ss_pred eEEeccCC-CCcceeeEEEecccccCCcceeeeech--hhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccC
Confidence 77643222 11223322222221 1111222333 111122222233344788888753222334556677777766
Q ss_pred cceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC---------c---cCcEEEEecCCCCccccccc
Q 021952 165 GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR---------R---KDDFWVLDTKAIPFTSVQQS 232 (305)
Q Consensus 165 ~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~---------~---~~~~~~~d~~~~~~~~~~~~ 232 (305)
..|+.+..+-..-..++| ....++.||+||-....+. + ....+... .
T Consensus 227 --~~w~slrfp~nvHhtnlP--------FakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k-----------~ 285 (367)
T PF12217_consen 227 --QNWSSLRFPNNVHHTNLP--------FAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLK-----------V 285 (367)
T ss_dssp --SS-EEEE-TT---SS-----------EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEE-----------E
T ss_pred --CchhhccccccccccCCC--------ceeeCCEEEEEeccccccccccCCCcccccccCCceEEEE-----------e
Confidence 889998522111111112 2237899999997643211 0 11122211 1
Q ss_pred cccccccccccceeecc---cCcCCCCCceeeeeeeCCCcEEEEEcCc
Q 021952 233 MLDSRGLLLNMWKRLRA---EGYKPNCRSFHRACPDYSGRYLYVFGGM 277 (305)
Q Consensus 233 ~~~~~~~~~~~W~~v~~---~~~~p~~r~~~~~~~~~~~~~i~v~GG~ 277 (305)
-|..+.+++-.|..+.. .|..-..-.+-+.+++..+=--|+|||.
T Consensus 286 nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgE 333 (367)
T PF12217_consen 286 NVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGE 333 (367)
T ss_dssp ETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB
T ss_pred ecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCc
Confidence 24456667888887754 2334444444455554433355679987
No 69
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.24 E-value=17 Score=34.42 Aligned_cols=119 Identities=11% Similarity=0.121 Sum_probs=62.7
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCC-CCCc-----cCCCeeEEEeCCEEEEEcccCCCCc
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP-SPPA-----RSGHSLTRIGGNRTVLFGGRGVGYE 152 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~-~p~~-----r~~~~~~~~~~~~i~v~GG~~~~~~ 152 (305)
++.++ .||+.... ..++.+|.++. ...|+.-.... ...+ ......++. ++++|+....
T Consensus 66 vv~~g-~vyv~s~~-------g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~d----- 129 (527)
T TIGR03075 66 LVVDG-VMYVTTSY-------SRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLD----- 129 (527)
T ss_pred EEECC-EEEEECCC-------CcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCC-----
Confidence 33444 88885432 35899998874 35687654111 0001 111223344 5677764321
Q ss_pred ccceeEEEEccccceeEEEeccccCCCCCCCCCC-cceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 153 VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLP-RVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 153 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
..++.+|.+++...|+.-. ...... ....+.++ .++.||+-... ........|..||.++.
T Consensus 130 --g~l~ALDa~TGk~~W~~~~-------~~~~~~~~~tssP~v-~~g~Vivg~~~-~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKN-------GDYKAGYTITAAPLV-VKGKVITGISG-GEFGVRGYVTAYDAKTG 191 (527)
T ss_pred --CEEEEEECCCCCEEeeccc-------ccccccccccCCcEE-ECCEEEEeecc-cccCCCcEEEEEECCCC
Confidence 3599999999888998652 111111 11122333 57776654321 11122456889998876
No 70
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.74 E-value=6.7 Score=29.10 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEE
Q 021952 138 GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFW 217 (305)
Q Consensus 138 ~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 217 (305)
++.+|-..-. .....+.+..||+++ .+|+.++.+ ............+ ..+++|-++.-........-++|
T Consensus 5 nGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~~P-----~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 5 NGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIKLP-----EDPYSSDCSSTLI-EYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEEee-----eeeccccCccEEE-EeCCeEEEEEecCCCCcceEEEE
Confidence 4566665544 223456799999999 999988521 0111222233333 36788777654433222345799
Q ss_pred EEec
Q 021952 218 VLDT 221 (305)
Q Consensus 218 ~~d~ 221 (305)
+++.
T Consensus 75 vLeD 78 (129)
T PF08268_consen 75 VLED 78 (129)
T ss_pred Eeec
Confidence 9963
No 71
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.79 E-value=18 Score=32.80 Aligned_cols=161 Identities=10% Similarity=0.059 Sum_probs=75.2
Q ss_pred cceEecCCC--CCCC--CcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCce
Q 021952 2 LKWQKVNSG--IPSG--RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHA 77 (305)
Q Consensus 2 ~~W~~~~~~--~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~ 77 (305)
-+|++.... .... .....+...+++.|++|-. + -++ ... ..-.+|+.+......|.. .+.
T Consensus 120 ~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---G----~il-~T~------DgG~tW~~~~~~~~~p~~--~~~ 183 (398)
T PLN00033 120 KTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---A----ILL-HTS------DGGETWERIPLSPKLPGE--PVL 183 (398)
T ss_pred CCceECccCcccccccccceeeeEEECCEEEEEcCc---e----EEE-EEc------CCCCCceECccccCCCCC--ceE
Confidence 479986311 1111 1234455567778887521 1 111 111 036789987643222322 233
Q ss_pred eEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccC--CCCC--------------ccCCCeeEEEeCCEE
Q 021952 78 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH--PSPP--------------ARSGHSLTRIGGNRT 141 (305)
Q Consensus 78 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~--~~p~--------------~r~~~~~~~~~~~~i 141 (305)
....+++..+++|.. + .+++-+-.-. +|+.+... ..+. .-....+....++.+
T Consensus 184 i~~~~~~~~~ivg~~---G----~v~~S~D~G~----tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~ 252 (398)
T PLN00033 184 IKATGPKSAEMVTDE---G----AIYVTSNAGR----NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDY 252 (398)
T ss_pred EEEECCCceEEEecc---c----eEEEECCCCC----CceEcccccccccccccccccccccceeccceeeEEEcCCCCE
Confidence 444555467777743 2 2444433333 89887311 1011 111122333345566
Q ss_pred EEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEecc
Q 021952 142 VLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 206 (305)
Q Consensus 142 ~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 206 (305)
+++|-.+ .+++-+-.. ...|+.+ +.+.++...++....++.+++.|..
T Consensus 253 ~~vg~~G-------~~~~s~d~G-~~~W~~~---------~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 253 VAVSSRG-------NFYLTWEPG-QPYWQPH---------NRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred EEEECCc-------cEEEecCCC-CcceEEe---------cCCCccceeeeeEcCCCCEEEEeCC
Confidence 6666443 133322222 1348988 3444444444433467788887743
No 72
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.33 E-value=22 Score=32.21 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=56.7
Q ss_pred eEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEcccccee-----EEEeccccCCCCCCCCCCccee
Q 021952 116 WQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK-----WVQIPYELQNIPAGFSLPRVGH 190 (305)
Q Consensus 116 W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~-----W~~~~~~~~~~~~~~p~~r~~~ 190 (305)
|+.+. .+.++.-.++....++.+++.|..+ .++.-+... .. |+.+ ..+..+..-
T Consensus 272 W~~~~---~~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G--~~~~~~~f~~~---------~~~~~~~~l 330 (398)
T PLN00033 272 WQPHN---RASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTG--LTEEDFDFEEA---------DIKSRGFGI 330 (398)
T ss_pred eEEec---CCCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCC--Ccccccceeec---------ccCCCCcce
Confidence 88885 2333444445455567888887543 133333322 33 4444 222222222
Q ss_pred E-EEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCc
Q 021952 191 S-ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGR 269 (305)
Q Consensus 191 ~-~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~ 269 (305)
. +....++.+++.|..-. +++-... -..|+++......+...+ .+.+..++
T Consensus 331 ~~v~~~~d~~~~a~G~~G~-------v~~s~D~------------------G~tW~~~~~~~~~~~~ly---~v~f~~~~ 382 (398)
T PLN00033 331 LDVGYRSKKEAWAAGGSGI-------LLRSTDG------------------GKSWKRDKGADNIAANLY---SVKFFDDK 382 (398)
T ss_pred EEEEEcCCCcEEEEECCCc-------EEEeCCC------------------CcceeEccccCCCCccee---EEEEcCCC
Confidence 2 22225677888886521 3333333 678998764333443333 33333456
Q ss_pred EEEEEc
Q 021952 270 YLYVFG 275 (305)
Q Consensus 270 ~i~v~G 275 (305)
+.++.|
T Consensus 383 ~g~~~G 388 (398)
T PLN00033 383 KGFVLG 388 (398)
T ss_pred ceEEEe
Confidence 888887
No 73
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.29 E-value=19 Score=31.30 Aligned_cols=206 Identities=14% Similarity=0.101 Sum_probs=86.4
Q ss_pred CcceEecCCCCCCC--CcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCcee
Q 021952 1 MLKWQKVNSGIPSG--RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAA 78 (305)
Q Consensus 1 ~~~W~~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~ 78 (305)
+.+|+++....+.+ ....++...++..|+.|-. . -++ ...+ .-.+|+++.... +.|-.....
T Consensus 46 G~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~---g----~ll-~T~D------gG~tW~~v~l~~--~lpgs~~~i 109 (302)
T PF14870_consen 46 GKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP---G----LLL-HTTD------GGKTWERVPLSS--KLPGSPFGI 109 (302)
T ss_dssp TSS-EE-----S-----EEEEEEEETTEEEEEEET---T----EEE-EESS------TTSS-EE----T--T-SS-EEEE
T ss_pred CccccccccCCCccceeeEEEEEecCCceEEEcCC---c----eEE-EecC------CCCCcEEeecCC--CCCCCeeEE
Confidence 35799886333332 2233445567888887631 1 111 1110 477899987432 233334455
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeE
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 158 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 158 (305)
...+++.++++|.. ..+|+-.-.- .+|+.+... . ...-..+....++++++++..+. -+.
T Consensus 110 ~~l~~~~~~l~~~~-------G~iy~T~DgG----~tW~~~~~~--~-~gs~~~~~r~~dG~~vavs~~G~------~~~ 169 (302)
T PF14870_consen 110 TALGDGSAELAGDR-------GAIYRTTDGG----KTWQAVVSE--T-SGSINDITRSSDGRYVAVSSRGN------FYS 169 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESSTT----SSEEEEE-S-------EEEEEE-TTS-EEEEETTSS------EEE
T ss_pred EEcCCCcEEEEcCC-------CcEEEeCCCC----CCeeEcccC--C-cceeEeEEECCCCcEEEEECccc------EEE
Confidence 55566678887643 2244433233 399988621 1 12222234455677777775531 133
Q ss_pred EEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccc
Q 021952 159 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 238 (305)
Q Consensus 159 ~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 238 (305)
..|.-. ..|+.. +.+..|.-.++....++.|+++. ..+ .+..=+....
T Consensus 170 s~~~G~--~~w~~~---------~r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s~~~~~-------------- 217 (302)
T PF14870_consen 170 SWDPGQ--TTWQPH---------NRNSSRRIQSMGFSPDGNLWMLA-RGG------QIQFSDDPDD-------------- 217 (302)
T ss_dssp EE-TT---SS-EEE---------E--SSS-EEEEEE-TTS-EEEEE-TTT------EEEEEE-TTE--------------
T ss_pred EecCCC--ccceEE---------ccCccceehhceecCCCCEEEEe-CCc------EEEEccCCCC--------------
Confidence 556655 779987 34445555555444667788875 211 1333331111
Q ss_pred cccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCcc
Q 021952 239 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 278 (305)
Q Consensus 239 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 278 (305)
...|++... + .....++.--+.....+.+++.||..
T Consensus 218 --~~~w~~~~~-~-~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 --GETWSEPII-P-IKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp --EEEE---B--T-TSS--S-EEEEEESSSS-EEEEESTT
T ss_pred --ccccccccC-C-cccCceeeEEEEecCCCCEEEEeCCc
Confidence 567876322 1 11222322333444567899999874
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.95 E-value=22 Score=31.71 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=60.2
Q ss_pred EEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCcc
Q 021952 20 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 99 (305)
Q Consensus 20 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 99 (305)
.++.++++|+. +. ...++.+|.. .-+..|+.-.. ... ....+ +.++.+|+..+ .
T Consensus 101 p~v~~~~v~v~-~~------~g~l~ald~~-----tG~~~W~~~~~-----~~~-~~~p~-v~~~~v~v~~~-------~ 154 (377)
T TIGR03300 101 VGADGGLVFVG-TE------KGEVIALDAE-----DGKELWRAKLS-----SEV-LSPPL-VANGLVVVRTN-------D 154 (377)
T ss_pred eEEcCCEEEEE-cC------CCEEEEEECC-----CCcEeeeeccC-----cee-ecCCE-EECCEEEEECC-------C
Confidence 44456677753 22 1357888871 12456875321 111 11222 33446776432 1
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEe
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 172 (305)
..++.+|++++ ...|+.-...+....+...+.+.. ++.+| +|... ..++.+|++++...|+.-
T Consensus 155 g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~-~~~~~------g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 155 GRLTALDAATG--ERLWTYSRVTPALTLRGSASPVIA-DGGVL-VGFAG------GKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEEE-CCEEE-EECCC------CEEEEEEccCCCEeeeec
Confidence 34899998774 246875441111112223344455 35444 44332 258899998876789753
No 75
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.12 E-value=22 Score=30.90 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=85.0
Q ss_pred cceEecCCCCCCCCcceeEEEE-CCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEE
Q 021952 2 LKWQKVNSGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACC 80 (305)
Q Consensus 2 ~~W~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~ 80 (305)
-+|++++-..+.|-..+.+..+ ++.++++|.. ..+|+=.= .-.+|+.+.... .........
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~D-------gG~tW~~~~~~~----~gs~~~~~r 152 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTD-------GGKTWQAVVSET----SGSINDITR 152 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESS-------TTSSEEEEE-S--------EEEEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCC-------CCCCeeEcccCC----cceeEeEEE
Confidence 4899986333445444555554 4567776532 12332111 467899876321 122222233
Q ss_pred ecCCEEEEEeccCCCCCccCcEE-EEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEE
Q 021952 81 IDNRKMVIHAGIGLYGLRLGDTW-VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWF 159 (305)
Q Consensus 81 ~~~~~lyv~GG~~~~~~~~~~~~-~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 159 (305)
..++++++++.. + .++ ..|+-.. .|.... .+..|.-.+|....++.+++.. .+ . .+..
T Consensus 153 ~~dG~~vavs~~---G----~~~~s~~~G~~----~w~~~~---r~~~~riq~~gf~~~~~lw~~~-~G-g-----~~~~ 211 (302)
T PF14870_consen 153 SSDGRYVAVSSR---G----NFYSSWDPGQT----TWQPHN---RNSSRRIQSMGFSPDGNLWMLA-RG-G-----QIQF 211 (302)
T ss_dssp -TTS-EEEEETT---S----SEEEEE-TT-S----S-EEEE-----SSS-EEEEEE-TTS-EEEEE-TT-T-----EEEE
T ss_pred CCCCcEEEEECc---c----cEEEEecCCCc----cceEEc---cCccceehhceecCCCCEEEEe-CC-c-----EEEE
Confidence 345566666543 2 133 3455444 798885 2334555667777777887765 32 1 1333
Q ss_pred EEccccceeEEEeccccCCCCCCCCCCcceeEEEEE-eCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccc
Q 021952 160 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 238 (305)
Q Consensus 160 ~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 238 (305)
=+...+...|++.. .+.....++...+.. .++.+++.||... +++=...
T Consensus 212 s~~~~~~~~w~~~~-------~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-------l~~S~Dg---------------- 261 (302)
T PF14870_consen 212 SDDPDDGETWSEPI-------IPIKTNGYGILDLAYRPPNEIWAVGGSGT-------LLVSTDG---------------- 261 (302)
T ss_dssp EE-TTEEEEE---B--------TTSS--S-EEEEEESSSS-EEEEESTT--------EEEESST----------------
T ss_pred ccCCCCcccccccc-------CCcccCceeeEEEEecCCCCEEEEeCCcc-------EEEeCCC----------------
Confidence 33112236788742 122223333222222 4688999988742 3433333
Q ss_pred cccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCc
Q 021952 239 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 277 (305)
Q Consensus 239 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~ 277 (305)
-++|++.......|...+ . +.+...++-+++|-.
T Consensus 262 --GktW~~~~~~~~~~~n~~--~-i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 262 --GKTWQKDRVGENVPSNLY--R-IVFVNPDKGFVLGQD 295 (302)
T ss_dssp --TSS-EE-GGGTTSSS-----E-EEEEETTEEEEE-ST
T ss_pred --CccceECccccCCCCceE--E-EEEcCCCceEEECCC
Confidence 678999876444443332 2 233245688888843
No 76
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.68 E-value=14 Score=27.36 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=49.5
Q ss_pred EEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccC-CCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEE-c
Q 021952 85 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH-PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD-V 162 (305)
Q Consensus 85 ~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d-~ 162 (305)
-+|-..-. .......+..||+.+. +|+.++.. ..........++.. ++++-++.-........=++|+++ .
T Consensus 7 vly~~a~~--~~~~~~~IvsFDv~~E----~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 7 VLYWLAWS--EDSDNNVIVSFDVRSE----KFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEEeEEEE--CCCCCcEEEEEEcCCc----eEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecc
Confidence 55555443 2234567899999999 99988731 12334455666677 477777654322212234788884 5
Q ss_pred cccceeEEEec
Q 021952 163 YEGFFKWVQIP 173 (305)
Q Consensus 163 ~~~~~~W~~~~ 173 (305)
++ .+|++..
T Consensus 80 ~k--~~Wsk~~ 88 (129)
T PF08268_consen 80 EK--QEWSKKH 88 (129)
T ss_pred cc--ceEEEEE
Confidence 55 8999874
No 77
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.92 E-value=25 Score=29.66 Aligned_cols=175 Identities=16% Similarity=0.209 Sum_probs=68.1
Q ss_pred CcceeEEEECCEEEEEccccCCCCC--cccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEecc
Q 021952 15 RFGHTCVVIGDCLVLFGGINDRGNR--HNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI 92 (305)
Q Consensus 15 r~~~~~~~~~~~lyv~GG~~~~~~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~ 92 (305)
-.-|+.|.+++.-|.+|=.+.+..+ ..-+++=+.... +..-.=+.+.. +........|.-.+++ .||+.--.
T Consensus 136 Te~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~s---p~~~vrr~i~s--ey~~~AsEPCvkyY~g-~LyLtTRg 209 (367)
T PF12217_consen 136 TELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFAS---PGVFVRRIIPS--EYERNASEPCVKYYDG-VLYLTTRG 209 (367)
T ss_dssp SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT----TT--EEEE--G--GG-TTEEEEEEEEETT-EEEEEEEE
T ss_pred eeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccC---Ccceeeeechh--hhccccccchhhhhCC-EEEEEEcC
Confidence 3457888888887777644432211 222222111100 01111122221 1222233334444565 89997543
Q ss_pred CCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCe---eEEEeCCEEEEEcccCCCCc--------c----cce-
Q 021952 93 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS---LTRIGGNRTVLFGGRGVGYE--------V----LND- 156 (305)
Q Consensus 93 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~---~~~~~~~~i~v~GG~~~~~~--------~----~~~- 156 (305)
......-+.+.+-+.... .|+.+. .|. ..+|+ .+.+ ++.+|+||-.-...+ . ...
T Consensus 210 t~~~~~GS~L~rs~d~G~----~w~slr---fp~-nvHhtnlPFakv-gD~l~mFgsERA~~EWE~G~~D~RY~~~yPRt 280 (367)
T PF12217_consen 210 TLPTNPGSSLHRSDDNGQ----NWSSLR---FPN-NVHHTNLPFAKV-GDVLYMFGSERAENEWEGGEPDNRYRANYPRT 280 (367)
T ss_dssp S-TTS---EEEEESSTTS----S-EEEE----TT----SS---EEEE-TTEEEEEEE-SSTT-SSTT-----SS-B--EE
T ss_pred cCCCCCcceeeeecccCC----chhhcc---ccc-cccccCCCceee-CCEEEEEeccccccccccCCCcccccccCCce
Confidence 222222334555544444 898885 222 22222 3344 579999986521111 0 011
Q ss_pred -eEEE-----EccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEE-EEEeccCC
Q 021952 157 -VWFL-----DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRV-LIYGGEDS 208 (305)
Q Consensus 157 -~~~~-----d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l-~v~GG~~~ 208 (305)
+.+. .++. .+|..++..+ -.+.....-.+-.++++.++-| |+|||.+-
T Consensus 281 F~~k~nv~~W~~d~--~ew~nitdqI--YqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 281 FMLKVNVSDWSLDD--VEWVNITDQI--YQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp EEEEEETTT---TT-----EEEEE-B--B--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred EEEEeecccCCccc--eEEEEeecce--eccccccccccceeEEEECCEEEEEecCccc
Confidence 1222 3344 6777775221 1222333333444445577765 89999964
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.84 E-value=26 Score=29.74 Aligned_cols=104 Identities=23% Similarity=0.394 Sum_probs=62.6
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d 161 (305)
.++.+|.--|. .+ -+.+..+|+.++ +-.+.. +.|..-++-.++.+ ++++|..-=.+ ...++||
T Consensus 54 ~~g~LyESTG~--yG--~S~l~~~d~~tg----~~~~~~--~l~~~~FgEGit~~-~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGL--YG--QSSLRKVDLETG----KVLQSV--PLPPRYFGEGITIL-GDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp ETTEEEEEECS--TT--EEEEEEEETTTS----SEEEEE--E-TTT--EEEEEEE-TTEEEEEESSS------SEEEEEE
T ss_pred CCCEEEEeCCC--CC--cEEEEEEECCCC----cEEEEE--ECCccccceeEEEE-CCEEEEEEecC------CeEEEEc
Confidence 55588887775 22 367899999997 544433 56666677788888 57999886543 3588999
Q ss_pred ccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 162 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 162 ~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
..+ .+.+. ..+.+.-+=..+. .+..|++.-|.+ .++.+|++
T Consensus 117 ~~t----l~~~~--------~~~y~~EGWGLt~-dg~~Li~SDGS~-------~L~~~dP~ 157 (264)
T PF05096_consen 117 PNT----LKKIG--------TFPYPGEGWGLTS-DGKRLIMSDGSS-------RLYFLDPE 157 (264)
T ss_dssp TTT----TEEEE--------EEE-SSS--EEEE-CSSCEEEE-SSS-------EEEEE-TT
T ss_pred ccc----ceEEE--------EEecCCcceEEEc-CCCEEEEECCcc-------ceEEECCc
Confidence 977 33331 2333334444543 667788888864 26666665
No 79
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.37 E-value=30 Score=30.54 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=36.9
Q ss_pred CceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCC---CCcc-CCCeeEEEeCC-EEEEEcccC
Q 021952 75 AHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPS---PPAR-SGHSLTRIGGN-RTVLFGGRG 148 (305)
Q Consensus 75 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~---p~~r-~~~~~~~~~~~-~i~v~GG~~ 148 (305)
.|.+..-+++.+|+..-. .+.+.+|+..... .+++.+. .... +... ..+.++...++ .+|+.-..
T Consensus 195 Rh~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~- 265 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNEL------SNTVSVFDYDPSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG- 265 (345)
T ss_dssp EEEEE-TTSSEEEEEETT------TTEEEEEEEETTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-
T ss_pred cEEEEcCCcCEEEEecCC------CCcEEEEeecccC--CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-
Confidence 355555566689998643 3557777776221 1555544 1112 2222 23333344334 46664321
Q ss_pred CCCcccceeEEEEcc
Q 021952 149 VGYEVLNDVWFLDVY 163 (305)
Q Consensus 149 ~~~~~~~~~~~~d~~ 163 (305)
.+.|.+|+++
T Consensus 266 -----~~sI~vf~~d 275 (345)
T PF10282_consen 266 -----SNSISVFDLD 275 (345)
T ss_dssp -----TTEEEEEEEC
T ss_pred -----CCEEEEEEEe
Confidence 3568888873
No 80
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.33 E-value=51 Score=30.80 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=62.1
Q ss_pred EEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCC--CCCc-cCCCeeEEEeCCEEEEEcccCCCCcccc
Q 021952 79 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP--SPPA-RSGHSLTRIGGNRTVLFGGRGVGYEVLN 155 (305)
Q Consensus 79 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~--~p~~-r~~~~~~~~~~~~i~v~GG~~~~~~~~~ 155 (305)
++.++ ++|+.... ..++.+|..+. ...|+.-.... ...+ ......++.+++++|+.... .
T Consensus 58 vv~~g-~vy~~~~~-------g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-------g 120 (488)
T cd00216 58 LVVDG-DMYFTTSH-------SALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-------G 120 (488)
T ss_pred EEECC-EEEEeCCC-------CcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEecCC-------C
Confidence 44454 88885432 35889998874 35687754111 0011 11112233322567764321 3
Q ss_pred eeEEEEccccceeEEEeccccCCCCCCC-CCCcceeEEEEEeCCEEEEEeccCCCC---CccCcEEEEecCCC
Q 021952 156 DVWFLDVYEGFFKWVQIPYELQNIPAGF-SLPRVGHSATLILGGRVLIYGGEDSAR---RRKDDFWVLDTKAI 224 (305)
Q Consensus 156 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~~~~~~d~~~~ 224 (305)
.++.+|.+++...|+.-. .... +......+.++ .++.+| +|...... .....++.||..+.
T Consensus 121 ~v~AlD~~TG~~~W~~~~------~~~~~~~~~i~ssP~v-~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 121 RLVALDAETGKQVWKFGN------NDQVPPGYTMTGAPTI-VKKLVI-IGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred eEEEEECCCCCEeeeecC------CCCcCcceEecCCCEE-ECCEEE-EeccccccccCCCCcEEEEEECCCC
Confidence 589999998888998753 1110 00011222333 456555 44332211 12456899999877
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.84 E-value=47 Score=30.40 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=56.1
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d 161 (305)
.+++|+++|+. . ..+-+||..++ .--..+...+.|.-+..+ ... ++.+++.|+-+. -+-.+|
T Consensus 78 ~DG~LlaaGD~--s----G~V~vfD~k~r---~iLR~~~ah~apv~~~~f--~~~-d~t~l~s~sDd~------v~k~~d 139 (487)
T KOG0310|consen 78 SDGRLLAAGDE--S----GHVKVFDMKSR---VILRQLYAHQAPVHVTKF--SPQ-DNTMLVSGSDDK------VVKYWD 139 (487)
T ss_pred cCCeEEEccCC--c----CcEEEeccccH---HHHHHHhhccCceeEEEe--ccc-CCeEEEecCCCc------eEEEEE
Confidence 45689999985 2 34888985543 011111122222222211 123 578999887642 234455
Q ss_pred ccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCC
Q 021952 162 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 223 (305)
Q Consensus 162 ~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~ 223 (305)
+.+ .. .+.. ..+..-.-|. .++...++++++.||++.. +-.||+.+
T Consensus 140 ~s~--a~-v~~~-----l~~htDYVR~--g~~~~~~~hivvtGsYDg~------vrl~DtR~ 185 (487)
T KOG0310|consen 140 LST--AY-VQAE-----LSGHTDYVRC--GDISPANDHIVVTGSYDGK------VRLWDTRS 185 (487)
T ss_pred cCC--cE-EEEE-----ecCCcceeEe--eccccCCCeEEEecCCCce------EEEEEecc
Confidence 555 32 1221 1122222233 3333367899999999875 66677763
No 82
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=78.73 E-value=32 Score=27.56 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=56.6
Q ss_pred ceeEEecC-CEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEE---cccCCCCC--ccCCCeeEEEe-CCEEEEEcccC
Q 021952 76 HAACCIDN-RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ---LVTHPSPP--ARSGHSLTRIG-GNRTVLFGGRG 148 (305)
Q Consensus 76 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~---~~~~~~p~--~r~~~~~~~~~-~~~i~v~GG~~ 148 (305)
.++....+ +++|+|-|. ..|+|+..+. .... +..-..|. .... ++.... ++++|+|-|.
T Consensus 54 DAa~~~~~~~~~yfFkg~--------~yw~~~~~~~----~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg~- 119 (194)
T cd00094 54 DAAFERPDTGKIYFFKGD--------KYWVYTGKNL----EPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKGD- 119 (194)
T ss_pred cEEEEECCCCEEEEECCC--------EEEEEcCccc----ccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeCC-
Confidence 34444433 689999763 3677776531 2211 11101111 1222 232332 5789999874
Q ss_pred CCCcccceeEEEEccccceeEEEecc-ccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 149 VGYEVLNDVWFLDVYEGFFKWVQIPY-ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 149 ~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
..|+||..+ ++...--+ .+...-..+|.. ..++....++++|++-|. ..|+||..
T Consensus 120 -------~y~ry~~~~--~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~--------~y~~~d~~ 175 (194)
T cd00094 120 -------KYWRYDEKT--QKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD--------QYWRFDPR 175 (194)
T ss_pred -------EEEEEeCCC--ccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC--------EEEEEeCc
Confidence 388998766 43321100 000001123322 233444344788888765 37999987
No 83
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=75.01 E-value=36 Score=30.94 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=15.3
Q ss_pred EeCCEEEEEeccCCCCCccCcEEEEe
Q 021952 195 ILGGRVLIYGGEDSARRRKDDFWVLD 220 (305)
Q Consensus 195 ~~~~~l~v~GG~~~~~~~~~~~~~~d 220 (305)
..++.+|++||. ++|+||
T Consensus 573 fi~dylY~vg~~--------ev~~ld 590 (603)
T COG4880 573 FIKDYLYLVGGN--------EVWKLD 590 (603)
T ss_pred EecceEEEeccc--------eeEEec
Confidence 378999999986 489999
No 84
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.05 E-value=91 Score=29.54 Aligned_cols=133 Identities=8% Similarity=-0.030 Sum_probs=68.1
Q ss_pred ceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCC-----CCCceeEEecCCEEEEEec
Q 021952 17 GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-----RGAHAACCIDNRKMVIHAG 91 (305)
Q Consensus 17 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~-----r~~~~~~~~~~~~lyv~GG 91 (305)
..+-++.+++||+... ...++.+|.. .-+..|+.-........+ ......+ +.++++|+...
T Consensus 62 ~stPvv~~g~vyv~s~-------~g~v~AlDa~-----TGk~lW~~~~~~~~~~~~~~~~~~~~rg~a-v~~~~v~v~t~ 128 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTS-------YSRVYALDAK-----TGKELWKYDPKLPDDVIPVMCCDVVNRGVA-LYDGKVFFGTL 128 (527)
T ss_pred ccCCEEECCEEEEECC-------CCcEEEEECC-----CCceeeEecCCCCcccccccccccccccce-EECCEEEEEcC
Confidence 3455677888998533 2257888871 124568753311100000 0111223 33347776322
Q ss_pred cCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEE
Q 021952 92 IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ 171 (305)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 171 (305)
-..++.+|.++. ...|+.-............+.++. ++++|+-... .....-..+..||.+++...|+.
T Consensus 129 -------dg~l~ALDa~TG--k~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 129 -------DARLVALDAKTG--KVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred -------CCEEEEEECCCC--CEEeecccccccccccccCCcEEE-CCEEEEeecc-cccCCCcEEEEEECCCCceeEec
Confidence 135899999875 356875431111011122334455 4666654221 11222346999999998889986
Q ss_pred ec
Q 021952 172 IP 173 (305)
Q Consensus 172 ~~ 173 (305)
-.
T Consensus 198 ~~ 199 (527)
T TIGR03075 198 YT 199 (527)
T ss_pred cC
Confidence 64
No 85
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=71.78 E-value=59 Score=27.27 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred CeEEcc---cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeE
Q 021952 115 SWQQLV---THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS 191 (305)
Q Consensus 115 ~W~~~~---~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~ 191 (305)
-|+... .+..+.|-.+.....=..+.++..||-. .++..|+++ ++.++.- --..-+-|+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~--G~i~r~~---------rGHtDYvH~ 161 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLED--GRIQREY---------RGHTDYVHS 161 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecC--CEEEEEE---------cCCcceeee
Confidence 465544 2234445555444332457899999863 489999999 8877762 112335566
Q ss_pred EEEEeCCEEEEEeccCCCCCccCcEEEEecCC
Q 021952 192 ATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 223 (305)
Q Consensus 192 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~ 223 (305)
.+.-..+--++.|+.++. +-+.|.++
T Consensus 162 vv~R~~~~qilsG~EDGt------vRvWd~kt 187 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGT------VRVWDTKT 187 (325)
T ss_pred eeecccCcceeecCCCcc------EEEEeccc
Confidence 654233344667777653 44556553
No 86
>PRK04792 tolB translocation protein TolB; Provisional
Probab=70.04 E-value=92 Score=28.74 Aligned_cols=104 Identities=11% Similarity=0.175 Sum_probs=53.6
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
..+|.+|+ .+.+-+.+... +. ........-++++|++.... ++ ..++|++|++++ +.+++.
T Consensus 242 ~~L~~~dl-------~tg~~~~lt~~---~g-~~~~~~wSPDG~~La~~~~~--~g--~~~Iy~~dl~tg----~~~~lt 302 (448)
T PRK04792 242 AEIFVQDI-------YTQVREKVTSF---PG-INGAPRFSPDGKKLALVLSK--DG--QPEIYVVDIATK----ALTRIT 302 (448)
T ss_pred cEEEEEEC-------CCCCeEEecCC---CC-CcCCeeECCCCCEEEEEEeC--CC--CeEEEEEECCCC----CeEECc
Confidence 35777777 45444444321 11 11122222344456655432 22 257999999987 777775
Q ss_pred cCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 121 THPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 121 ~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
.. .. .........+++ |++..... ...++|.+|+.+ ++++++.
T Consensus 303 ~~--~~--~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~--g~~~~Lt 346 (448)
T PRK04792 303 RH--RA--IDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLAS--GKVSRLT 346 (448)
T ss_pred cC--CC--CccceEECCCCCEEEEEECCC----CCceEEEEECCC--CCEEEEe
Confidence 21 11 111223333444 44433221 124799999998 8888874
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.22 E-value=85 Score=27.27 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=34.2
Q ss_pred EEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEcc
Q 021952 85 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVY 163 (305)
Q Consensus 85 ~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~ 163 (305)
++|+.... .+.+.+||+.++ .+++.+. ..+.....+.++...+++ +|+ ++.. ...+..|++.
T Consensus 3 ~~y~~~~~------~~~I~~~~~~~~---g~l~~~~--~~~~~~~~~~l~~spd~~~lyv-~~~~-----~~~i~~~~~~ 65 (330)
T PRK11028 3 IVYIASPE------SQQIHVWNLNHE---GALTLLQ--VVDVPGQVQPMVISPDKRHLYV-GVRP-----EFRVLSYRIA 65 (330)
T ss_pred EEEEEcCC------CCCEEEEEECCC---Cceeeee--EEecCCCCccEEECCCCCEEEE-EECC-----CCcEEEEEEC
Confidence 56776443 245788888643 2666555 112122223343433444 555 4322 1457777775
Q ss_pred -ccceeEEEe
Q 021952 164 -EGFFKWVQI 172 (305)
Q Consensus 164 -~~~~~W~~~ 172 (305)
+ +.++.+
T Consensus 66 ~~--g~l~~~ 73 (330)
T PRK11028 66 DD--GALTFA 73 (330)
T ss_pred CC--CceEEe
Confidence 4 556544
No 88
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.54 E-value=87 Score=27.19 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=30.3
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~d 161 (305)
++.||+.+.. .+.+..|+++.+ .+++.+. ..+.+...+.++...++ .+|+.. .. .+.+.+||
T Consensus 46 ~~~lyv~~~~------~~~i~~~~~~~~---g~l~~~~--~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~ 108 (330)
T PRK11028 46 KRHLYVGVRP------EFRVLSYRIADD---GALTFAA--ESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSP 108 (330)
T ss_pred CCEEEEEECC------CCcEEEEEECCC---CceEEee--eecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEE
Confidence 3456664331 245777777532 1565544 11111111223333344 455543 22 24678888
Q ss_pred ccc
Q 021952 162 VYE 164 (305)
Q Consensus 162 ~~~ 164 (305)
+++
T Consensus 109 ~~~ 111 (330)
T PRK11028 109 LDK 111 (330)
T ss_pred ECC
Confidence 864
No 89
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=64.62 E-value=1e+02 Score=27.39 Aligned_cols=109 Identities=13% Similarity=0.214 Sum_probs=61.7
Q ss_pred EecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEE
Q 021952 80 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWF 159 (305)
Q Consensus 80 ~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 159 (305)
++.++++|+.. .++ .++.+|+++. ...|+....+ ......+.....++++|+-.... .++.
T Consensus 65 ~~~dg~v~~~~---~~G----~i~A~d~~~g--~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-------~~y~ 125 (370)
T COG1520 65 ADGDGTVYVGT---RDG----NIFALNPDTG--LVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-------KLYA 125 (370)
T ss_pred EeeCCeEEEec---CCC----cEEEEeCCCC--cEEecccCcC---cceeccCceEEeCCeEEEecccc-------eEEE
Confidence 44455888861 122 6899999986 1138666521 11111222233356766543322 6999
Q ss_pred EEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 160 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 160 ~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
||..++...|+.-. .. . ++....+ +..++.+|+.- . .+.++.+|..+.
T Consensus 126 ld~~~G~~~W~~~~-------~~-~-~~~~~~~-v~~~~~v~~~s-~------~g~~~al~~~tG 173 (370)
T COG1520 126 LDASTGTLVWSRNV-------GG-S-PYYASPP-VVGDGTVYVGT-D------DGHLYALNADTG 173 (370)
T ss_pred EECCCCcEEEEEec-------CC-C-eEEecCc-EEcCcEEEEec-C------CCeEEEEEccCC
Confidence 99988778998773 11 2 3333333 33566666554 1 234888888876
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=64.37 E-value=1.1e+02 Score=27.53 Aligned_cols=110 Identities=14% Similarity=0.220 Sum_probs=55.6
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFL 160 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~ 160 (305)
+++.|++.... . ...++|.+|+.++ +..++.... ... .......++ +|++..... . ...+|.+
T Consensus 244 Dg~~l~~~~~~--~--~~~~i~~~d~~~~----~~~~l~~~~--~~~--~~~~~s~dg~~l~~~s~~~-g---~~~iy~~ 307 (417)
T TIGR02800 244 DGSKLAVSLSK--D--GNPDIYVMDLDGK----QLTRLTNGP--GID--TEPSWSPDGKSIAFTSDRG-G---SPQIYMM 307 (417)
T ss_pred CCCEEEEEECC--C--CCccEEEEECCCC----CEEECCCCC--CCC--CCEEECCCCCEEEEEECCC-C---CceEEEE
Confidence 34456554332 1 1357999999887 666665211 111 111222234 444443221 1 2379999
Q ss_pred EccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 161 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 161 d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
|+.+ ..+..+.. .. ..........+++.+++...... ...++++|+.
T Consensus 308 d~~~--~~~~~l~~-----~~-----~~~~~~~~spdg~~i~~~~~~~~---~~~i~~~d~~ 354 (417)
T TIGR02800 308 DADG--GEVRRLTF-----RG-----GYNASPSWSPDGDLIAFVHREGG---GFNIAVMDLD 354 (417)
T ss_pred ECCC--CCEEEeec-----CC-----CCccCeEECCCCCEEEEEEccCC---ceEEEEEeCC
Confidence 9988 77777741 11 11112222235555555544321 3468999987
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=63.28 E-value=1.2e+02 Score=27.71 Aligned_cols=104 Identities=11% Similarity=0.086 Sum_probs=57.3
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
.++|.+|+ .+.+=+.+.... .........-++++|.+.-.. .+ ..++|++|++++ +++++.
T Consensus 213 ~~Iyv~dl-------~tg~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~--~g--~~~Iy~~dl~~g----~~~~LT 273 (419)
T PRK04043 213 PTLYKYNL-------YTGKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAP--KG--QPDIYLYDTNTK----TLTQIT 273 (419)
T ss_pred CEEEEEEC-------CCCcEEEEecCC----CcEEeeEECCCCCEEEEEEcc--CC--CcEEEEEECCCC----cEEEcc
Confidence 37888888 555555554211 111112233344466555432 21 358999999887 888876
Q ss_pred cCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 121 THPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 121 ~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..+. .........++ +|++.-... -..+++++|+.+ +..+++.
T Consensus 274 --~~~~--~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~--g~~~rlt 317 (419)
T PRK04043 274 --NYPG--IDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNS--GSVEQVV 317 (419)
T ss_pred --cCCC--ccCccEECCCCCEEEEEECCC----CCceEEEEECCC--CCeEeCc
Confidence 2221 12222333334 455544321 125799999998 8887774
No 92
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.37 E-value=1.1e+02 Score=26.12 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=43.8
Q ss_pred eEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCc
Q 021952 133 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR 212 (305)
Q Consensus 133 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 212 (305)
++++++.+-+++=|... ..+...|+.++...|+++- ..|...++++ .++. +|+|=+++
T Consensus 16 LVV~~dskT~v~igSHs-----~~~~avd~~sG~~~We~il-----------g~RiE~sa~v-vgdf-VV~GCy~g---- 73 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS-----GIVIAVDPQSGNLIWEAIL-----------GVRIECSAIV-VGDF-VVLGCYSG---- 73 (354)
T ss_pred EEEecCCceEEEEecCC-----ceEEEecCCCCcEEeehhh-----------CceeeeeeEE-ECCE-EEEEEccC----
Confidence 55665555444444332 2366788888888999873 2577777766 5665 66665543
Q ss_pred cCcEEEEecCCC
Q 021952 213 KDDFWVLDTKAI 224 (305)
Q Consensus 213 ~~~~~~~d~~~~ 224 (305)
-+|.++.++.
T Consensus 74 --~lYfl~~~tG 83 (354)
T KOG4649|consen 74 --GLYFLCVKTG 83 (354)
T ss_pred --cEEEEEecch
Confidence 3899998876
No 93
>PRK04792 tolB translocation protein TolB; Provisional
Probab=59.90 E-value=1.4e+02 Score=27.45 Aligned_cols=60 Identities=10% Similarity=0.196 Sum_probs=33.9
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..+|++|+.++ +-+.+. ..+. .........+++ +++....+ . ..++|.+|+++ ++.+++.
T Consensus 242 ~~L~~~dl~tg----~~~~lt--~~~g--~~~~~~wSPDG~~La~~~~~~-g---~~~Iy~~dl~t--g~~~~lt 302 (448)
T PRK04792 242 AEIFVQDIYTQ----VREKVT--SFPG--INGAPRFSPDGKKLALVLSKD-G---QPEIYVVDIAT--KALTRIT 302 (448)
T ss_pred cEEEEEECCCC----CeEEec--CCCC--CcCCeeECCCCCEEEEEEeCC-C---CeEEEEEECCC--CCeEECc
Confidence 46889998876 555554 2111 112233333444 54443221 1 25799999998 8888774
No 94
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=59.03 E-value=1e+02 Score=25.44 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=59.7
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEE-eCCEEEEEcccCCCCcccceeEEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI-GGNRTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~d 161 (305)
++.+|+..- .-..++++|+.++ +-..+.. +. ...++.. .++.+|+..... +..+|
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~----~~~~~~~---~~---~~G~~~~~~~g~l~v~~~~~--------~~~~d 66 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTG----EVEVIDL---PG---PNGMAFDRPDGRLYVADSGG--------IAVVD 66 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTT----EEEEEES---SS---EEEEEEECTTSEEEEEETTC--------EEEEE
T ss_pred CCEEEEEEc------CCCEEEEEECCCC----eEEEEec---CC---CceEEEEccCCEEEEEEcCc--------eEEEe
Confidence 457777632 2357999999986 5444432 11 2233444 467888876542 56779
Q ss_pred ccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCcc--CcEEEEecC
Q 021952 162 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRK--DDFWVLDTK 222 (305)
Q Consensus 162 ~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~d~~ 222 (305)
+.+ ++++.+... .....+..+..-.+ +..++.||+-.-........ ..+++++..
T Consensus 67 ~~~--g~~~~~~~~---~~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 67 PDT--GKVTVLADL---PDGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TTT--TEEEEEEEE---ETTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred cCC--CcEEEEeec---cCCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC
Confidence 998 888877410 00111223333323 33567788765332221212 568999975
No 95
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=56.47 E-value=1.2e+02 Score=25.43 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=62.9
Q ss_pred ccceEEecccCCCCCCCCCCceeEE-ecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeE
Q 021952 56 ITLSWRLLDVGSIAPPARGAHAACC-IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT 134 (305)
Q Consensus 56 ~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~ 134 (305)
.-.+|+...... +.....+.+.+ ..++.|+++--.. ... ...+.+..+.. .+|+.......|.+.....++
T Consensus 143 ~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G---~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 143 GGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGG---RTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp TTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTT---SS-EEEEEEECSSCCEEEEEE
T ss_pred CCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCC---CcCCCceecccCcccCCceEE
Confidence 356688766432 22233444443 4556888876542 111 22333333333 589986633455555555556
Q ss_pred EEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcce-eEEEEEeCCEEEE
Q 021952 135 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVG-HSATLILGGRVLI 202 (305)
Q Consensus 135 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~~l~v 202 (305)
...++.++++.........+ .++.-.-.. .+|+.... ...-+...++ .+++...+++|+|
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l-~l~~S~D~g--~tW~~~~~-----i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNL-SLYVSEDGG--KTWSRPKT-----IDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEE-EEEEECTTC--EEEEEEEE-----EEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EcCCCCEEEEEECCCCCCce-EEEEEeCCC--CcCCccEE-----EeCCCCCcEECCeeEEeCCCcCCC
Confidence 65677888887732221111 122222223 89987641 1111212232 3344445678876
No 96
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=55.86 E-value=1.2e+02 Score=25.47 Aligned_cols=157 Identities=11% Similarity=0.054 Sum_probs=73.3
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCC-CCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENF-CFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~-~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d 161 (305)
.+++|++.+...+ .++.|....++ ...+..+.- .+|.+-.+...++. ++.+|.- ....+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~--~Lp~~~~GtG~vVY-ngslYY~------~~~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY--KLPYPWQGTGHVVY-NGSLYYN------KYNSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE--EEeceeccCCeEEE-CCcEEEE------ecCCceEEEEE
Confidence 3489999886322 46666554431 000122221 34444445455555 3455432 12356799999
Q ss_pred cccccee-EEEeccccCCCCCCCCCCcceeEEE--EEeCCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccc
Q 021952 162 VYEGFFK-WVQIPYELQNIPAGFSLPRVGHSAT--LILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 238 (305)
Q Consensus 162 ~~~~~~~-W~~~~~~~~~~~~~~p~~r~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 238 (305)
+.+.... +..++ ........|....+++-+ .+.++-|+|+=....... .--|-++|+++..-
T Consensus 96 L~t~~v~~~~~L~--~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v------------ 160 (250)
T PF02191_consen 96 LTTRSVVARRELP--GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSV------------ 160 (250)
T ss_pred CcCCcEEEEEECC--ccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCce------------
Confidence 9983333 55553 111111112111222221 225666777755533211 12345567664321
Q ss_pred cccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCcc
Q 021952 239 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 278 (305)
Q Consensus 239 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 278 (305)
..+|..- .+...++.+-++| +.||++--..
T Consensus 161 --~~tw~T~-----~~k~~~~naFmvC---GvLY~~~s~~ 190 (250)
T PF02191_consen 161 --EQTWNTS-----YPKRSAGNAFMVC---GVLYATDSYD 190 (250)
T ss_pred --EEEEEec-----cCchhhcceeeEe---eEEEEEEECC
Confidence 5667632 3344444433333 4677766543
No 97
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=54.57 E-value=86 Score=25.11 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCCcccceeecccccccccccceEEecccCCC--CCCCCCCceeEEecCCE-EEEEeccCCCCCccCcEEEEeccCCCCC
Q 021952 37 GNRHNDTWIGQIACHENLGITLSWRLLDVGSI--APPARGAHAACCIDNRK-MVIHAGIGLYGLRLGDTWVLELSENFCF 113 (305)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~p~~r~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~d~~~~~~~ 113 (305)
.....++|.+|+ .+..|..+..... --.|. . +..+++.. ++++|..-..-+.-..+|+|++.++
T Consensus 84 eEgiGkIYIkn~-------~~~~~~~L~i~~~~~k~sPK--~-i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg--- 150 (200)
T PF15525_consen 84 EEGIGKIYIKNL-------NNNNWWSLQIDQNEEKYSPK--Y-IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTG--- 150 (200)
T ss_pred cccceeEEEEec-------CCCceEEEEecCcccccCCc--e-eEEecCCcEEEEEccccceEccCCeEEEEEccCC---
Confidence 345788999999 6777765543221 22344 2 33444434 4555532111122457999999998
Q ss_pred cCeEEcc
Q 021952 114 GSWQQLV 120 (305)
Q Consensus 114 ~~W~~~~ 120 (305)
+-+.+-
T Consensus 151 -~~~~ly 156 (200)
T PF15525_consen 151 -NLTELY 156 (200)
T ss_pred -ceeEee
Confidence 666655
No 98
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.36 E-value=1.1e+02 Score=28.91 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=41.7
Q ss_pred CccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEe
Q 021952 126 PARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG 204 (305)
Q Consensus 126 ~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 204 (305)
.|+.+.-+++..-++ ||+. |.+ +++|+||++. +.|-+.- ..-.+-..+..+. .-..|+.+|
T Consensus 132 IP~~GRDm~y~~~scDly~~-gsg------~evYRlNLEq--GrfL~P~--------~~~~~~lN~v~in-~~hgLla~G 193 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLV-GSG------SEVYRLNLEQ--GRFLNPF--------ETDSGELNVVSIN-EEHGLLACG 193 (703)
T ss_pred cCcCCccccccCCCccEEEe-ecC------cceEEEEccc--ccccccc--------ccccccceeeeec-CccceEEec
Confidence 356666666654444 5554 433 4699999999 8886541 1111222222211 346788899
Q ss_pred ccCCCCCccCcEEEEecC
Q 021952 205 GEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 205 G~~~~~~~~~~~~~~d~~ 222 (305)
|.++. |..+|+.
T Consensus 194 t~~g~------VEfwDpR 205 (703)
T KOG2321|consen 194 TEDGV------VEFWDPR 205 (703)
T ss_pred ccCce------EEEecch
Confidence 87543 6677765
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=53.13 E-value=2.2e+02 Score=27.51 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCCCCCCc--eeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc--cCCCCCccCCCeeEEEeCCEEEEE
Q 021952 69 APPARGAH--AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV--THPSPPARSGHSLTRIGGNRTVLF 144 (305)
Q Consensus 69 ~p~~r~~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~--~~~~p~~r~~~~~~~~~~~~i~v~ 144 (305)
.|..+... .+..++++++++.. ....+++.+++.+. +..++. ....-.+-.++-++.-.++.|-++
T Consensus 424 ~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~p----s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 424 VPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETP----SFKELKSIQSQAKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred chhhhccceeeEEEecCceEEEEe------cccceeEEEEecCc----chhhhhccccccCCCcceeEEEcCCCCEEEEE
Confidence 44444333 33334555777765 22446777877775 555554 112122333444444445678887
Q ss_pred cccCCCCcccceeEEEEccccceeEEEe
Q 021952 145 GGRGVGYEVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 145 GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 172 (305)
++.+ .+++|++++ .+-+-+
T Consensus 494 ~t~g-------~I~v~nl~~--~~~~~l 512 (691)
T KOG2048|consen 494 STRG-------QIFVYNLET--LESHLL 512 (691)
T ss_pred eccc-------eEEEEEccc--ceeecc
Confidence 7653 599999999 655544
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=52.41 E-value=1.8e+02 Score=26.37 Aligned_cols=60 Identities=8% Similarity=0.121 Sum_probs=34.2
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..+|++|++++ +-+.+. ..+ ..........+++ +++..... + ..++|.+|+.+ ...+++.
T Consensus 223 ~~l~~~~l~~g----~~~~l~--~~~--g~~~~~~~SpDG~~la~~~~~~-g---~~~Iy~~d~~~--~~~~~lt 283 (430)
T PRK00178 223 PRIFVQNLDTG----RREQIT--NFE--GLNGAPAWSPDGSKLAFVLSKD-G---NPEIYVMDLAS--RQLSRVT 283 (430)
T ss_pred CEEEEEECCCC----CEEEcc--CCC--CCcCCeEECCCCCEEEEEEccC-C---CceEEEEECCC--CCeEEcc
Confidence 47999999887 666665 111 1112233333444 44332211 1 25799999999 7787774
No 101
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=52.11 E-value=1.5e+02 Score=25.25 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEE
Q 021952 24 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTW 103 (305)
Q Consensus 24 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 103 (305)
++.+|.--|... .+.+..+|+ .+.+-..... +|..-++-.++..++ +||..-=. ....+
T Consensus 55 ~g~LyESTG~yG----~S~l~~~d~-------~tg~~~~~~~---l~~~~FgEGit~~~d-~l~qLTWk------~~~~f 113 (264)
T PF05096_consen 55 DGTLYESTGLYG----QSSLRKVDL-------ETGKVLQSVP---LPPRYFGEGITILGD-KLYQLTWK------EGTGF 113 (264)
T ss_dssp TTEEEEEECSTT----EEEEEEEET-------TTSSEEEEEE----TTT--EEEEEEETT-EEEEEESS------SSEEE
T ss_pred CCEEEEeCCCCC----cEEEEEEEC-------CCCcEEEEEE---CCccccceeEEEECC-EEEEEEec------CCeEE
Confidence 345555444433 356788888 5665543332 444455566666666 99998653 34579
Q ss_pred EEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccc
Q 021952 104 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 164 (305)
Q Consensus 104 ~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~ 164 (305)
+||.++ .+++. ..+.+.-+-.++.. +..+++--|. +.++.+|+++
T Consensus 114 ~yd~~t------l~~~~--~~~y~~EGWGLt~d-g~~Li~SDGS-------~~L~~~dP~~ 158 (264)
T PF05096_consen 114 VYDPNT------LKKIG--TFPYPGEGWGLTSD-GKRLIMSDGS-------SRLYFLDPET 158 (264)
T ss_dssp EEETTT------TEEEE--EEE-SSS--EEEEC-SSCEEEE-SS-------SEEEEE-TTT
T ss_pred EEcccc------ceEEE--EEecCCcceEEEcC-CCEEEEECCc-------cceEEECCcc
Confidence 999874 34444 22333456667655 4678887775 3599999977
No 102
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.02 E-value=1.6e+02 Score=25.18 Aligned_cols=111 Identities=20% Similarity=0.315 Sum_probs=62.7
Q ss_pred eeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccce
Q 021952 77 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLND 156 (305)
Q Consensus 77 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 156 (305)
-.++.++.+-+++=|. ....+...|++++ ++.|+.+- . .|.-.++.+++ + ++|+|=+. ..
T Consensus 15 pLVV~~dskT~v~igS-----Hs~~~~avd~~sG--~~~We~il--g---~RiE~sa~vvg-d-fVV~GCy~------g~ 74 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGS-----HSGIVIAVDPQSG--NLIWEAIL--G---VRIECSAIVVG-D-FVVLGCYS------GG 74 (354)
T ss_pred cEEEecCCceEEEEec-----CCceEEEecCCCC--cEEeehhh--C---ceeeeeeEEEC-C-EEEEEEcc------Cc
Confidence 3445555455554443 1334677888874 67898875 1 45555666674 3 46666543 23
Q ss_pred eEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 157 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 157 ~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
+|.++..++..-|.-.. .+.. ...+.+.-++.++-.|-.+.+ .+++|+++.
T Consensus 75 lYfl~~~tGs~~w~f~~------~~~v-----k~~a~~d~~~glIycgshd~~------~yalD~~~~ 125 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVI------LETV-----KVRAQCDFDGGLIYCGSHDGN------FYALDPKTY 125 (354)
T ss_pred EEEEEecchhheeeeee------hhhh-----ccceEEcCCCceEEEecCCCc------EEEeccccc
Confidence 88888888667787652 1111 112333234555555655443 678887753
No 103
>PRK03629 tolB translocation protein TolB; Provisional
Probab=50.75 E-value=2e+02 Score=26.31 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=40.2
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 161 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d 161 (305)
++++|++.... .+ ..++|++|++++ +..++.. ... .........+++.++|..... ...++|.+|
T Consensus 253 DG~~La~~~~~--~g--~~~I~~~d~~tg----~~~~lt~--~~~--~~~~~~wSPDG~~I~f~s~~~---g~~~Iy~~d 317 (429)
T PRK03629 253 DGSKLAFALSK--TG--SLNLYVMDLASG----QIRQVTD--GRS--NNTEPTWFPDSQNLAYTSDQA---GRPQVYKVN 317 (429)
T ss_pred CCCEEEEEEcC--CC--CcEEEEEECCCC----CEEEccC--CCC--CcCceEECCCCCEEEEEeCCC---CCceEEEEE
Confidence 44456654332 11 235999999887 7766652 111 112233444455444433211 124799999
Q ss_pred ccccceeEEEec
Q 021952 162 VYEGFFKWVQIP 173 (305)
Q Consensus 162 ~~~~~~~W~~~~ 173 (305)
+.+ ..-+++.
T Consensus 318 ~~~--g~~~~lt 327 (429)
T PRK03629 318 ING--GAPQRIT 327 (429)
T ss_pred CCC--CCeEEee
Confidence 988 6666663
No 104
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.48 E-value=1.3e+02 Score=24.12 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=42.5
Q ss_pred CCCCccCcEEEEeccCCCCCcCeEEcccCCC---CCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeE
Q 021952 94 LYGLRLGDTWVLELSENFCFGSWQQLVTHPS---PPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKW 169 (305)
Q Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~---p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W 169 (305)
....-..++|++|+.++ .|..+..++. ..|. -+..+.+.. ++++|.....-.-.-.++.|++.+ +.-
T Consensus 82 a~eEgiGkIYIkn~~~~----~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t--g~~ 152 (200)
T PF15525_consen 82 AEEEGIGKIYIKNLNNN----NWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT--GNL 152 (200)
T ss_pred cccccceeEEEEecCCC----ceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccC--Cce
Confidence 33345789999999998 8876652222 2344 244555544 555553211111123599999999 777
Q ss_pred EEec
Q 021952 170 VQIP 173 (305)
Q Consensus 170 ~~~~ 173 (305)
+.+.
T Consensus 153 ~~ly 156 (200)
T PF15525_consen 153 TELY 156 (200)
T ss_pred eEee
Confidence 7773
No 105
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=50.15 E-value=1.9e+02 Score=26.01 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=74.5
Q ss_pred cccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCC-----ccCcEEEEeccCCCCCc
Q 021952 40 HNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL-----RLGDTWVLELSENFCFG 114 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~~~d~~~~~~~~ 114 (305)
...++++|+ .+.+...-. .+.+.. ..+....+++.+++........ ....+++.++.+.
T Consensus 149 ~~~l~v~Dl-------~tg~~l~d~----i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~---- 212 (414)
T PF02897_consen 149 WYTLRVFDL-------ETGKFLPDG----IENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP---- 212 (414)
T ss_dssp EEEEEEEET-------TTTEEEEEE----EEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-----
T ss_pred eEEEEEEEC-------CCCcCcCCc----cccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC----
Confidence 346778888 565443211 112222 2245555545666655433211 2567899998886
Q ss_pred CeE--EcccCCCCCccC-CCeeEEEeCCEEEEEcccCCCCcccceeEEEEcccc---ceeEEEeccccCCCCCCCCCCcc
Q 021952 115 SWQ--QLVTHPSPPARS-GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEG---FFKWVQIPYELQNIPAGFSLPRV 188 (305)
Q Consensus 115 ~W~--~~~~~~~p~~r~-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~---~~~W~~~~~~~~~~~~~~p~~r~ 188 (305)
.-+ .+- ..+.+.. ...+....+++.+++.-.. ... .++++.+|+... ...|..+. . ...-.
T Consensus 213 ~~~d~lvf--e~~~~~~~~~~~~~s~d~~~l~i~~~~-~~~-~s~v~~~d~~~~~~~~~~~~~l~--------~-~~~~~ 279 (414)
T PF02897_consen 213 QSEDELVF--EEPDEPFWFVSVSRSKDGRYLFISSSS-GTS-ESEVYLLDLDDGGSPDAKPKLLS--------P-REDGV 279 (414)
T ss_dssp GGG-EEEE--C-TTCTTSEEEEEE-TTSSEEEEEEES-SSS-EEEEEEEECCCTTTSS-SEEEEE--------E-SSSS-
T ss_pred hHhCeeEE--eecCCCcEEEEEEecCcccEEEEEEEc-ccc-CCeEEEEeccccCCCcCCcEEEe--------C-CCCce
Confidence 433 222 2222232 2233333344444433221 222 478999999872 24788884 1 11111
Q ss_pred eeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 189 GHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 189 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
...+...++.+|+....+.+ ...|..+++...
T Consensus 280 -~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~ 311 (414)
T PF02897_consen 280 -EYYVDHHGDRLYILTNDDAP---NGRLVAVDLADP 311 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-T---T-EEEEEETTST
T ss_pred -EEEEEccCCEEEEeeCCCCC---CcEEEEeccccc
Confidence 12222358889988874332 456888888744
No 106
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=48.06 E-value=2.1e+02 Score=25.79 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=70.0
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
+++|.+++.... .....|+.+.... .-..+.+-..+ +.+|+.... +.....+...++.... ...|..+-
T Consensus 252 s~v~~~d~~~~~--~~~~~~~~l~~~~----~~~~~~v~~~~-~~~yi~Tn~---~a~~~~l~~~~l~~~~-~~~~~~~l 320 (414)
T PF02897_consen 252 SEVYLLDLDDGG--SPDAKPKLLSPRE----DGVEYYVDHHG-DRLYILTND---DAPNGRLVAVDLADPS-PAEWWTVL 320 (414)
T ss_dssp EEEEEEECCCTT--TSS-SEEEEEESS----SS-EEEEEEET-TEEEEEE-T---T-TT-EEEEEETTSTS-GGGEEEEE
T ss_pred CeEEEEeccccC--CCcCCcEEEeCCC----CceEEEEEccC-CEEEEeeCC---CCCCcEEEEecccccc-cccceeEE
Confidence 678888882110 0134788776321 11122222234 488887653 2334568888888750 01266332
Q ss_pred cCCCCCcc-CCCeeEEEeCCEEEEEcccCCCCcccceeEEEEcc-ccceeEEEeccccCCCCCCCCCCcceeEEEEE---
Q 021952 121 THPSPPAR-SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-EGFFKWVQIPYELQNIPAGFSLPRVGHSATLI--- 195 (305)
Q Consensus 121 ~~~~p~~r-~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~-~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~--- 195 (305)
..+... .--.+... ++.+++.-= ......+.++|+. + ..-..+ .+|.. +......
T Consensus 321 --~~~~~~~~l~~~~~~-~~~Lvl~~~----~~~~~~l~v~~~~~~--~~~~~~---------~~p~~--g~v~~~~~~~ 380 (414)
T PF02897_consen 321 --IPEDEDVSLEDVSLF-KDYLVLSYR----ENGSSRLRVYDLDDG--KESREI---------PLPEA--GSVSGVSGDF 380 (414)
T ss_dssp --E--SSSEEEEEEEEE-TTEEEEEEE----ETTEEEEEEEETT-T--EEEEEE---------ESSSS--SEEEEEES-T
T ss_pred --cCCCCceeEEEEEEE-CCEEEEEEE----ECCccEEEEEECCCC--cEEeee---------cCCcc--eEEeccCCCC
Confidence 111121 22223333 456666532 2335679999998 5 333333 23322 2111111
Q ss_pred eCCE-EEEEeccCCCCCccCcEEEEecCC
Q 021952 196 LGGR-VLIYGGEDSARRRKDDFWVLDTKA 223 (305)
Q Consensus 196 ~~~~-l~v~GG~~~~~~~~~~~~~~d~~~ 223 (305)
..+. .|.+.+...+ ..+|.||+.+
T Consensus 381 ~~~~~~~~~ss~~~P----~~~y~~d~~t 405 (414)
T PF02897_consen 381 DSDELRFSYSSFTTP----PTVYRYDLAT 405 (414)
T ss_dssp T-SEEEEEEEETTEE----EEEEEEETTT
T ss_pred CCCEEEEEEeCCCCC----CEEEEEECCC
Confidence 1233 4556666554 3589999984
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=47.73 E-value=2.2e+02 Score=26.02 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=40.3
Q ss_pred eEEEeCCEEEEEcccCCCCcccceeEEEEcccccee-EEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCC
Q 021952 133 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK-WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 211 (305)
Q Consensus 133 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 211 (305)
+...++|-.|+.-+.++ ..+..+|++. .+ ...+ .++...--.+......+.+++++|.+-
T Consensus 394 ~i~FsENGY~Lat~add-----~~V~lwDLRK--l~n~kt~---------~l~~~~~v~s~~fD~SGt~L~~~g~~l--- 454 (506)
T KOG0289|consen 394 AISFSENGYWLATAADD-----GSVKLWDLRK--LKNFKTI---------QLDEKKEVNSLSFDQSGTYLGIAGSDL--- 454 (506)
T ss_pred EEEeccCceEEEEEecC-----CeEEEEEehh--hccccee---------eccccccceeEEEcCCCCeEEeeccee---
Confidence 33444555666555432 1388899987 32 1222 111111111222224467777776542
Q ss_pred ccCcEEEEecCCCCccccccccccccccccccceeecc
Q 021952 212 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA 249 (305)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~ 249 (305)
.||.++-. ++.|+++..
T Consensus 455 ---~Vy~~~k~------------------~k~W~~~~~ 471 (506)
T KOG0289|consen 455 ---QVYICKKK------------------TKSWTEIKE 471 (506)
T ss_pred ---EEEEEecc------------------cccceeeeh
Confidence 25666655 889999876
No 108
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=47.13 E-value=2.1e+02 Score=25.61 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=54.9
Q ss_pred ceeEEe--cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcC-eEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCc
Q 021952 76 HAACCI--DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGS-WQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE 152 (305)
Q Consensus 76 ~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~-W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~ 152 (305)
|..... +++++|+.+. + ..+.++|+.+. + -.+++. .......+...+++.++.+...
T Consensus 39 h~~~~~s~Dgr~~yv~~r---d----g~vsviD~~~~----~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~---- 98 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR---D----GTVSVIDLATG----KVVATIKV-----GGNPRGIAVSPDGKYVYVANYE---- 98 (369)
T ss_dssp EEEEE-TT-SSEEEEEET---T----SEEEEEETTSS----SEEEEEE------SSEEEEEEE--TTTEEEEEEEE----
T ss_pred eeEEEecCCCCEEEEEcC---C----CeEEEEECCcc----cEEEEEec-----CCCcceEEEcCCCCEEEEEecC----
Confidence 555443 3468999753 2 25899999987 4 222332 2333445554556655555443
Q ss_pred ccceeEEEEccccceeE-EEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 153 VLNDVWFLDVYEGFFKW-VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 153 ~~~~~~~~d~~~~~~~W-~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
.+.+.++|.++ .+= +.++... .....+.+|...-... ..+..||+--.+ .+++|.+|..
T Consensus 99 -~~~v~v~D~~t--le~v~~I~~~~--~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd-----~~~I~vVdy~ 158 (369)
T PF02239_consen 99 -PGTVSVIDAET--LEPVKTIPTGG--MPVDGPESRVAAIVAS-PGRPEFVVNLKD-----TGEIWVVDYS 158 (369)
T ss_dssp -TTEEEEEETTT----EEEEEE--E--E-TTTS---EEEEEE--SSSSEEEEEETT-----TTEEEEEETT
T ss_pred -CCceeEecccc--ccceeeccccc--ccccccCCCceeEEec-CCCCEEEEEEcc-----CCeEEEEEec
Confidence 24688999887 432 2221000 0011144454322221 344445554332 3468999876
No 109
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.37 E-value=1.9e+02 Score=26.22 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCC
Q 021952 73 RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSEN 110 (305)
Q Consensus 73 r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~ 110 (305)
+.--+++..-++.=|+++|. .++ .+++||.+..
T Consensus 236 ~~~wSC~wDlde~h~IYaGl-~nG----~VlvyD~R~~ 268 (463)
T KOG1645|consen 236 NQIWSCCWDLDERHVIYAGL-QNG----MVLVYDMRQP 268 (463)
T ss_pred CCceeeeeccCCcceeEEec-cCc----eEEEEEccCC
Confidence 44445555544477788885 233 4899998864
No 110
>PRK00178 tolB translocation protein TolB; Provisional
Probab=44.45 E-value=2.5e+02 Score=25.54 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=34.9
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
.++|++|++++ +.+++. ..+. .........++ .|++.... ....+++.+|+.+ +.++++.
T Consensus 267 ~~Iy~~d~~~~----~~~~lt--~~~~--~~~~~~~spDg~~i~f~s~~----~g~~~iy~~d~~~--g~~~~lt 327 (430)
T PRK00178 267 PEIYVMDLASR----QLSRVT--NHPA--IDTEPFWGKDGRTLYFTSDR----GGKPQIYKVNVNG--GRAERVT 327 (430)
T ss_pred ceEEEEECCCC----CeEEcc--cCCC--CcCCeEECCCCCEEEEEECC----CCCceEEEEECCC--CCEEEee
Confidence 57999999987 777765 2111 11222333344 44443221 1124799999988 7787774
No 111
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=43.11 E-value=1.7e+02 Score=23.32 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=37.7
Q ss_pred eeEEec-CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEE-----ccc--CCCCCccCCCeeEEEeCCEEEEEcccC
Q 021952 77 AACCID-NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ-----LVT--HPSPPARSGHSLTRIGGNRTVLFGGRG 148 (305)
Q Consensus 77 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~-----~~~--~~~p~~r~~~~~~~~~~~~i~v~GG~~ 148 (305)
++.... ++++|+|-|. ..|+||...+ +... +.. ...|.. . .++....++++|+|-|.
T Consensus 103 AA~~~~~~~~~yfFkg~--------~y~ry~~~~~----~v~~~yP~~i~~~w~g~p~~-i-daa~~~~~~~~yfF~g~- 167 (194)
T cd00094 103 AALRWPDNGKTYFFKGD--------KYWRYDEKTQ----KMDPGYPKLIETDFPGVPDK-V-DAAFRWLDGYYYFFKGD- 167 (194)
T ss_pred EEEEEcCCCEEEEEeCC--------EEEEEeCCCc----cccCCCCcchhhcCCCcCCC-c-ceeEEeCCCcEEEEECC-
Confidence 344443 4699999873 3688887654 2211 110 122222 2 23334444789999775
Q ss_pred CCCcccceeEEEEccc
Q 021952 149 VGYEVLNDVWFLDVYE 164 (305)
Q Consensus 149 ~~~~~~~~~~~~d~~~ 164 (305)
.+|+||..+
T Consensus 168 -------~y~~~d~~~ 176 (194)
T cd00094 168 -------QYWRFDPRS 176 (194)
T ss_pred -------EEEEEeCcc
Confidence 499999987
No 112
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.69 E-value=2.4e+02 Score=24.96 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=72.0
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
+.++.|++. ..+-+........|..--.|.+..-+++.+|++.=. ...-++|.||.... +.+.++
T Consensus 167 Dri~~y~~~-------dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL----~stV~v~~y~~~~g----~~~~lQ 231 (346)
T COG2706 167 DRIFLYDLD-------DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL----NSTVDVLEYNPAVG----KFEELQ 231 (346)
T ss_pred ceEEEEEcc-------cCccccccccccCCCCCcceEEEcCCCcEEEEEecc----CCEEEEEEEcCCCc----eEEEee
Confidence 456677773 333333222221233334566666677788888543 12345777777655 777776
Q ss_pred -cCCCC----CccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEE
Q 021952 121 -THPSP----PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI 195 (305)
Q Consensus 121 -~~~~p----~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~ 195 (305)
..-+| ..+.+.+..+..+++++..--+ ..+.+++|.+....++-+-+.. ....-..||..- ..
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~----~~teg~~PR~F~--i~- 299 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGI----TPTEGQFPRDFN--IN- 299 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEE----eccCCcCCccce--eC-
Confidence 22233 2333444444445554443322 2346777766542243333320 011222355432 12
Q ss_pred eCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 196 LGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 196 ~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
..++++|.-+.+.+. =.++..|.+
T Consensus 300 ~~g~~Liaa~q~sd~---i~vf~~d~~ 323 (346)
T COG2706 300 PSGRFLIAANQKSDN---ITVFERDKE 323 (346)
T ss_pred CCCCEEEEEccCCCc---EEEEEEcCC
Confidence 455566666554331 234445555
No 113
>PRK04922 tolB translocation protein TolB; Provisional
Probab=42.04 E-value=2.7e+02 Score=25.39 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=34.2
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
.++|++|+.++ +..++.. ... .........+++-+++...... ..++|.+|+.+ ...+++.
T Consensus 272 ~~Iy~~d~~~g----~~~~lt~--~~~--~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~--g~~~~lt 332 (433)
T PRK04922 272 PEIYVMDLGSR----QLTRLTN--HFG--IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASG--GSAERLT 332 (433)
T ss_pred ceEEEEECCCC----CeEECcc--CCC--CccceEECCCCCEEEEEECCCC---CceEEEEECCC--CCeEEee
Confidence 57999999887 6666541 111 1122333334444444321111 24799999988 7777774
No 114
>PRK04043 tolB translocation protein TolB; Provisional
Probab=41.68 E-value=2.8e+02 Score=25.38 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=28.5
Q ss_pred eeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 156 DVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 156 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
++|++|+.+ ++=+.+. . ...........-.+.+|++.-.... ..++|.+|+.
T Consensus 214 ~Iyv~dl~t--g~~~~lt--------~-~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~ 265 (419)
T PRK04043 214 TLYKYNLYT--GKKEKIA--------S-SQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTN 265 (419)
T ss_pred EEEEEECCC--CcEEEEe--------c-CCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECC
Confidence 799999988 6666663 1 1111111222213445554433221 4679999987
No 115
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.59 E-value=2.6e+02 Score=24.79 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=79.9
Q ss_pred EEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccC
Q 021952 21 VVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLG 100 (305)
Q Consensus 21 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~ 100 (305)
+..++++|+. ..+ ..++.+|+. .....|+..... ......+-....+++||+-... +
T Consensus 65 ~~~dg~v~~~---~~~----G~i~A~d~~-----~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~~g~~~---g---- 121 (370)
T COG1520 65 ADGDGTVYVG---TRD----GNIFALNPD-----TGLVKWSYPLLG----AVAQLSGPILGSDGKIYVGSWD---G---- 121 (370)
T ss_pred EeeCCeEEEe---cCC----CcEEEEeCC-----CCcEEecccCcC----cceeccCceEEeCCeEEEeccc---c----
Confidence 5667788875 111 267778882 112248764421 0011111111224466664332 1
Q ss_pred cEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCC
Q 021952 101 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIP 180 (305)
Q Consensus 101 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~ 180 (305)
.+++||.++ +++.|..-..+ . ++..-.+ +..+..+|+.- ....++.+|..++...|+.-. .
T Consensus 122 ~~y~ld~~~--G~~~W~~~~~~--~-~~~~~~~-v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~-----~- 182 (370)
T COG1520 122 KLYALDAST--GTLVWSRNVGG--S-PYYASPP-VVGDGTVYVGT-------DDGHLYALNADTGTLKWTYET-----P- 182 (370)
T ss_pred eEEEEECCC--CcEEEEEecCC--C-eEEecCc-EEcCcEEEEec-------CCCeEEEEEccCCcEEEEEec-----C-
Confidence 688999864 34688877633 2 3333333 33345666542 124588999998888998553 0
Q ss_pred CCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 181 AGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 181 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
... ..+...... +.++.+|+-... . ...++.+|+++.
T Consensus 183 ~~~-~~~~~~~~~-~~~~~vy~~~~~----~-~~~~~a~~~~~G 219 (370)
T COG1520 183 APL-SLSIYGSPA-IASGTVYVGSDG----Y-DGILYALNAEDG 219 (370)
T ss_pred Ccc-ccccccCce-eecceEEEecCC----C-cceEEEEEccCC
Confidence 111 222222222 355665555321 1 226999999877
No 116
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=39.51 E-value=3.5e+02 Score=25.89 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCCCCceeEEecCC-EEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEE-eCCEEEEEcccC
Q 021952 71 PARGAHAACCIDNR-KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI-GGNRTVLFGGRG 148 (305)
Q Consensus 71 ~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~i~v~GG~~ 148 (305)
.|+.+.-++...-+ .||+.|- -.++|++|+..+ .|-..- ..-.+-..+ +.+ .-+.++.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqG----rfL~P~--~~~~~~lN~--v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQG----RFLNPF--ETDSGELNV--VSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEcccc----cccccc--cccccccee--eeecCccceEEecccC
Confidence 34444444443222 3665442 247999999987 774433 111111121 222 124688888864
Q ss_pred CCCcccceeEEEEccc
Q 021952 149 VGYEVLNDVWFLDVYE 164 (305)
Q Consensus 149 ~~~~~~~~~~~~d~~~ 164 (305)
..+..+|++.
T Consensus 197 ------g~VEfwDpR~ 206 (703)
T KOG2321|consen 197 ------GVVEFWDPRD 206 (703)
T ss_pred ------ceEEEecchh
Confidence 2477788876
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=39.34 E-value=2.2e+02 Score=23.58 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=32.0
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCe-EEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSW-QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL 160 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~ 160 (305)
+++.+|+.++. .+.+.++|+++. +- ..++. ....++++...++.+++++.... +.+..+
T Consensus 83 ~g~~l~~~~~~------~~~l~~~d~~~~----~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~ 142 (300)
T TIGR03866 83 NGKILYIANED------DNLVTVIDIETR----KVLAEIPV-----GVEPEGMAVSPDGKIVVNTSETT-----NMAHFI 142 (300)
T ss_pred CCCEEEEEcCC------CCeEEEEECCCC----eEEeEeeC-----CCCcceEEECCCCCEEEEEecCC-----CeEEEE
Confidence 34456665432 135888999875 21 22211 11123444554566666654321 235667
Q ss_pred Eccc
Q 021952 161 DVYE 164 (305)
Q Consensus 161 d~~~ 164 (305)
|..+
T Consensus 143 d~~~ 146 (300)
T TIGR03866 143 DTKT 146 (300)
T ss_pred eCCC
Confidence 8776
No 118
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=37.76 E-value=58 Score=17.09 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=13.5
Q ss_pred CCceeEEecCCEEEEEec
Q 021952 74 GAHAACCIDNRKMVIHAG 91 (305)
Q Consensus 74 ~~~~~~~~~~~~lyv~GG 91 (305)
..|+++...++.+|..|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 478888887789999985
No 119
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=36.92 E-value=3.1e+02 Score=24.52 Aligned_cols=118 Identities=7% Similarity=-0.065 Sum_probs=65.9
Q ss_pred CEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEecc---CCCCCccCc
Q 021952 25 DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI---GLYGLRLGD 101 (305)
Q Consensus 25 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~---~~~~~~~~~ 101 (305)
.++||.-...... .+.++++|. .+.+-...- +.....|....-+++.+|+.-.. ...+...+.
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~-------~~~~v~g~i-----~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDG-------EAGRVLGMT-----DGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCccccc--CceEEEEEC-------CCCEEEEEE-----EccCCCceeECCCCCEEEEEeccccccccCCCCCE
Confidence 4577775432222 267889998 554443322 22323333444456689998763 234456788
Q ss_pred EEEEeccCCCCCcCe-EEcccCCCCCcc-----CCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeE
Q 021952 102 TWVLELSENFCFGSW-QQLVTHPSPPAR-----SGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKW 169 (305)
Q Consensus 102 ~~~~d~~~~~~~~~W-~~~~~~~~p~~r-----~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W 169 (305)
+.++|+.+. +- .+++. ++.|| ..+..+...+++ +|+. ....-+.+-+.|+.+ ++-
T Consensus 79 V~v~D~~t~----~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-----n~~p~~~V~VvD~~~--~kv 140 (352)
T TIGR02658 79 VEVIDPQTH----LPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-----QFSPSPAVGVVDLEG--KAF 140 (352)
T ss_pred EEEEECccC----cEEeEEcc--CCCchhhccCccceEEECCCCCEEEEe-----cCCCCCEEEEEECCC--CcE
Confidence 999999986 32 23432 23334 233444444554 5554 223346788999988 544
No 120
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=36.42 E-value=1.9e+02 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecc
Q 021952 197 GGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA 249 (305)
Q Consensus 197 ~~~l~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~ 249 (305)
+.++++.||.+.. |-.+|+.++. .|.+||.+-+.|..+..
T Consensus 311 ~~n~fl~G~sd~k------i~~wDiRs~k-------vvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 311 NQNIFLVGGSDKK------IRQWDIRSGK-------VVQEYDRHLGAILDITF 350 (503)
T ss_pred CCcEEEEecCCCc------EEEEeccchH-------HHHHHHhhhhheeeeEE
Confidence 4589999999764 6777877543 56777777777776654
No 121
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.32 E-value=3e+02 Score=24.20 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCceeEEecC-CEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc---cCCCCCccCCCeeEEE-eCCEEEEEccc
Q 021952 73 RGAHAACCIDN-RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV---THPSPPARSGHSLTRI-GGNRTVLFGGR 147 (305)
Q Consensus 73 r~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~---~~~~p~~r~~~~~~~~-~~~~i~v~GG~ 147 (305)
...|.+....+ +.+|+.- . -.+.+++|+.+.+.. +..... ....-.||. ++.. .+..+|+..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~--~l~~~~~~~~~~G~GPRh---~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTG--KLTPVDSIKVPPGSGPRH---LAFSPDGKYAYVVNEL 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS---TEEEEEEEECSTTSSEEE---EEE-TTSSEEEEEETT
T ss_pred ccceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCc--eEEEeeccccccCCCCcE---EEEcCCcCEEEEecCC
Confidence 34566655544 4666642 2 145689998887511 243322 112222332 3333 23578887643
Q ss_pred CCCCcccceeEEEEccccceeEEEec
Q 021952 148 GVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 148 ~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
.+.+.+|++......++.++
T Consensus 213 ------s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 213 ------SNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp ------TTEEEEEEEETTTTEEEEEE
T ss_pred ------CCcEEEEeecccCCceeEEE
Confidence 35677777762115555554
No 122
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=34.97 E-value=3.5e+02 Score=24.53 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=32.6
Q ss_pred CCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEE
Q 021952 24 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTW 103 (305)
Q Consensus 24 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 103 (305)
+++-+||++..+. ...+|.+|+ .+.+-+++... +..-....+...+++.+|.+-.. ..++
T Consensus 46 dG~kllF~s~~dg---~~nly~lDL-------~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~ 105 (386)
T PF14583_consen 46 DGRKLLFASDFDG---NRNLYLLDL-------ATGEITQLTDG---PGDNTFGGFLSPDDRALYYVKNG-------RSLR 105 (386)
T ss_dssp TS-EEEEEE-TTS---S-EEEEEET-------TT-EEEE---S---S-B-TTT-EE-TTSSEEEEEETT-------TEEE
T ss_pred CCCEEEEEeccCC---CcceEEEEc-------ccCEEEECccC---CCCCccceEEecCCCeEEEEECC-------CeEE
Confidence 3445556555332 346899999 88888888742 22222234444555676544321 3578
Q ss_pred EEeccCC
Q 021952 104 VLELSEN 110 (305)
Q Consensus 104 ~~d~~~~ 110 (305)
..|++|.
T Consensus 106 ~vdL~T~ 112 (386)
T PF14583_consen 106 RVDLDTL 112 (386)
T ss_dssp EEETTT-
T ss_pred EEECCcC
Confidence 8888875
No 123
>PRK05137 tolB translocation protein TolB; Provisional
Probab=34.56 E-value=3.6e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=34.5
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCE-EEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..+|++|+.++ +...+. ..+... .+.....+++ |++..... -..++|.+|+++ ..-.++.
T Consensus 226 ~~i~~~dl~~g----~~~~l~--~~~g~~--~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~--~~~~~Lt 286 (435)
T PRK05137 226 PRVYLLDLETG----QRELVG--NFPGMT--FAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRS--GTTTRLT 286 (435)
T ss_pred CEEEEEECCCC----cEEEee--cCCCcc--cCcEECCCCCEEEEEEecC----CCceEEEEECCC--CceEEcc
Confidence 57999999887 666665 222111 1223333444 44332221 125799999998 7777774
No 124
>PRK04922 tolB translocation protein TolB; Provisional
Probab=33.22 E-value=3.8e+02 Score=24.45 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=33.0
Q ss_pred CcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 100 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 100 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..++++|+.++ +-..+. ..+. .. .+.....++ ++++..... . ..+++.+|+.+ +..+++.
T Consensus 228 ~~l~~~dl~~g----~~~~l~--~~~g-~~-~~~~~SpDG~~l~~~~s~~-g---~~~Iy~~d~~~--g~~~~lt 288 (433)
T PRK04922 228 SAIYVQDLATG----QRELVA--SFRG-IN-GAPSFSPDGRRLALTLSRD-G---NPEIYVMDLGS--RQLTRLT 288 (433)
T ss_pred cEEEEEECCCC----CEEEec--cCCC-Cc-cCceECCCCCEEEEEEeCC-C---CceEEEEECCC--CCeEECc
Confidence 56899999887 666554 2221 11 122233334 444432221 1 24799999998 7666663
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=30.84 E-value=3.1e+02 Score=22.69 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=32.8
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEE-cccCCCCCccCCCeeEEEeCC-EEEEEcccCCCCcccceeEE
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWF 159 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~ 159 (305)
+++.+|+.++. .+.+.++|..+. +... ++.+ ..+ ...+...++ .+|+.++.. ..+..
T Consensus 41 dg~~l~~~~~~------~~~v~~~d~~~~----~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~------~~l~~ 99 (300)
T TIGR03866 41 DGKLLYVCASD------SDTIQVIDLATG----EVIGTLPSG--PDP---ELFALHPNGKILYIANEDD------NLVTV 99 (300)
T ss_pred CCCEEEEEECC------CCeEEEEECCCC----cEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC------CeEEE
Confidence 34456776653 235888998876 5433 2211 111 223333333 465554432 35889
Q ss_pred EEccc
Q 021952 160 LDVYE 164 (305)
Q Consensus 160 ~d~~~ 164 (305)
+|+.+
T Consensus 100 ~d~~~ 104 (300)
T TIGR03866 100 IDIET 104 (300)
T ss_pred EECCC
Confidence 99987
No 126
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=30.75 E-value=5.7e+02 Score=25.70 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=24.2
Q ss_pred eeEEEeCCEEEEEcccCCCC----cccceeEEEEccccceeEEEec
Q 021952 132 SLTRIGGNRTVLFGGRGVGY----EVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 132 ~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
+.++. ++.+|+ |+..... ...-.+..||.+++...|+.-.
T Consensus 311 ~P~V~-~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 311 PPLVA-GTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred CCEEE-CCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 34445 456555 5432111 2234689999999888998653
No 127
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=30.65 E-value=4.5e+02 Score=24.57 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEe
Q 021952 98 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 98 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 172 (305)
...|+|+++.+.+ +-.++. .+ .++.-.+....++.++|.--....-.....++..+.+. .....+
T Consensus 105 ~taDly~v~~e~G----e~kRiTyfG----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg--~~~e~L 170 (668)
T COG4946 105 QTADLYVVPSEDG----EAKRITYFG----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDG--IKTEPL 170 (668)
T ss_pred ccccEEEEeCCCC----cEEEEEEec----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCC--ceeeec
Confidence 4678999999887 777776 33 33444455566778888755432222234455555554 434443
No 128
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.56 E-value=4.1e+02 Score=24.07 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCC-ccCCCeeEEEeCCEEEEE-cccCCCC
Q 021952 74 GAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLF-GGRGVGY 151 (305)
Q Consensus 74 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~-GG~~~~~ 151 (305)
+++.-+...+++-++|++. .. ....+|.+|+.+. +-+++. ..+. ...+ ..+.-.++.+|.+ .+
T Consensus 37 YF~~~~ft~dG~kllF~s~-~d--g~~nly~lDL~t~----~i~QLT--dg~g~~~~g-~~~s~~~~~~~Yv~~~----- 101 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD-FD--GNRNLYLLDLATG----EITQLT--DGPGDNTFG-GFLSPDDRALYYVKNG----- 101 (386)
T ss_dssp -TTS--B-TTS-EEEEEE--TT--SS-EEEEEETTT-----EEEE-----SS-B-TTT--EE-TTSSEEEEEETT-----
T ss_pred eecCCCcCCCCCEEEEEec-cC--CCcceEEEEcccC----EEEECc--cCCCCCccc-eEEecCCCeEEEEECC-----
Confidence 3333343444455555553 12 2346899999998 777776 3332 2233 3333334565444 33
Q ss_pred cccceeEEEEccccceeEEEe
Q 021952 152 EVLNDVWFLDVYEGFFKWVQI 172 (305)
Q Consensus 152 ~~~~~~~~~d~~~~~~~W~~~ 172 (305)
..++.+|+++ .+=+.+
T Consensus 102 ---~~l~~vdL~T--~e~~~v 117 (386)
T PF14583_consen 102 ---RSLRRVDLDT--LEERVV 117 (386)
T ss_dssp ---TEEEEEETTT----EEEE
T ss_pred ---CeEEEEECCc--CcEEEE
Confidence 2588999988 554444
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.87 E-value=2.7e+02 Score=24.95 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=17.3
Q ss_pred CCCceeeeeeeCCCcEEEEEcCccCCCc
Q 021952 255 NCRSFHRACPDYSGRYLYVFGGMVDGLV 282 (305)
Q Consensus 255 ~~r~~~~~~~~~~~~~i~v~GG~~~~~~ 282 (305)
..|+.|..++-.+-+.=||+-|..+..+
T Consensus 312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred HhhhheeeEEEEeccccEEEecCCCcce
Confidence 4566666655445556778888755543
No 130
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=28.39 E-value=52 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=14.6
Q ss_pred eCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 196 LGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 196 ~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
..+.++|+||...=....+.+++||+.
T Consensus 35 ~AG~F~vLGG~~EMpW~FdRlykydIT 61 (103)
T PF14830_consen 35 KAGTFFVLGGEKEMPWAFDRLYKYDIT 61 (103)
T ss_dssp EEEEEEE---TTS---B-SS-EEEE-H
T ss_pred EccEEEEcCCCccCccccCccchhhHH
Confidence 457789999997766678889999985
No 131
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=28.25 E-value=3e+02 Score=23.83 Aligned_cols=79 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred cEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCC
Q 021952 101 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIP 180 (305)
Q Consensus 101 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~ 180 (305)
.+++||+++. +|...+ -+-..-...++-+-..+++.+ ...-.+.+.+||+++ .+.+.+
T Consensus 255 ~l~rfdPs~~----sW~eyp--LPgs~arpys~rVD~~grVW~------sea~agai~rfdpet--a~ftv~-------- 312 (353)
T COG4257 255 SLHRFDPSVT----SWIEYP--LPGSKARPYSMRVDRHGRVWL------SEADAGAIGRFDPET--ARFTVL-------- 312 (353)
T ss_pred eeeEeCcccc----cceeee--CCCCCCCcceeeeccCCcEEe------eccccCceeecCccc--ceEEEe--------
Q ss_pred CCCCCCcceeEEEEEeCCEEEE
Q 021952 181 AGFSLPRVGHSATLILGGRVLI 202 (305)
Q Consensus 181 ~~~p~~r~~~~~~~~~~~~l~v 202 (305)
..|.+..+-....-..++++.
T Consensus 313 -p~pr~n~gn~ql~gr~ge~W~ 333 (353)
T COG4257 313 -PIPRPNSGNIQLDGRPGELWF 333 (353)
T ss_pred -cCCCCCCCceeccCCCCceee
No 132
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=27.64 E-value=96 Score=15.81 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.8
Q ss_pred cceeEEEEEeCCEEEEEeccCC
Q 021952 187 RVGHSATLILGGRVLIYGGEDS 208 (305)
Q Consensus 187 r~~~~~~~~~~~~l~v~GG~~~ 208 (305)
+..|+-.++.+++..++|+.+-
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~ 24 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANL 24 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccC
Confidence 4456666668888888898753
No 133
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.03 E-value=2.9e+02 Score=26.78 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=37.7
Q ss_pred cCCEEEEEeccCCCCCccCcEEEEeccCCCC--CcCeEEcccCCCC-CccCC-CeeEEEeCCEEEEEcccCCCCccccee
Q 021952 82 DNRKMVIHAGIGLYGLRLGDTWVLELSENFC--FGSWQQLVTHPSP-PARSG-HSLTRIGGNRTVLFGGRGVGYEVLNDV 157 (305)
Q Consensus 82 ~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~--~~~W~~~~~~~~p-~~r~~-~~~~~~~~~~i~v~GG~~~~~~~~~~~ 157 (305)
.++.+++.||.+. .++++|+.+.+. ......++....+ .++.+ .+.+.-..+.+++.||.. .++
T Consensus 128 k~~~lvaSgGLD~------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte------k~l 195 (735)
T KOG0308|consen 128 KNNELVASGGLDR------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE------KDL 195 (735)
T ss_pred cCceeEEecCCCc------cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc------cce
Confidence 5567889999733 366666665311 1123333321222 22322 223333334788888875 357
Q ss_pred EEEEccc
Q 021952 158 WFLDVYE 164 (305)
Q Consensus 158 ~~~d~~~ 164 (305)
..||+++
T Consensus 196 r~wDprt 202 (735)
T KOG0308|consen 196 RLWDPRT 202 (735)
T ss_pred EEecccc
Confidence 7777776
No 134
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.74 E-value=1.1e+02 Score=15.83 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=12.8
Q ss_pred ceeEEEEccccceeEE
Q 021952 155 NDVWFLDVYEGFFKWV 170 (305)
Q Consensus 155 ~~~~~~d~~~~~~~W~ 170 (305)
..++.+|.+++...|+
T Consensus 16 g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 16 GTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEEcccCcEEEE
Confidence 3589999988777886
No 135
>PRK05137 tolB translocation protein TolB; Provisional
Probab=25.65 E-value=5.2e+02 Score=23.57 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=53.3
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
..+|.+|+ .+.+.+.+... +. ........-++++|++.... .+ ..++|++|++++ +..++.
T Consensus 226 ~~i~~~dl-------~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~--~g--~~~Iy~~d~~~~----~~~~Lt 286 (435)
T PRK05137 226 PRVYLLDL-------ETGQRELVGNF---PG-MTFAPRFSPDGRKVVMSLSQ--GG--NTDIYTMDLRSG----TTTRLT 286 (435)
T ss_pred CEEEEEEC-------CCCcEEEeecC---CC-cccCcEECCCCCEEEEEEec--CC--CceEEEEECCCC----ceEEcc
Confidence 46888888 55555555421 11 11122222344455554332 11 357999999887 666665
Q ss_pred cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEec
Q 021952 121 THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 173 (305)
Q Consensus 121 ~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 173 (305)
..+. .........+++-++|.... .-..++|.+|+.+ ...+++.
T Consensus 287 --~~~~--~~~~~~~spDG~~i~f~s~~---~g~~~Iy~~d~~g--~~~~~lt 330 (435)
T PRK05137 287 --DSPA--IDTSPSYSPDGSQIVFESDR---SGSPQLYVMNADG--SNPRRIS 330 (435)
T ss_pred --CCCC--ccCceeEcCCCCEEEEEECC---CCCCeEEEEECCC--CCeEEee
Confidence 2111 11122333344433443221 1124799999987 7677773
No 136
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=23.88 E-value=3.1e+02 Score=23.69 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred eEecCCCCCCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecC
Q 021952 4 WQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDN 83 (305)
Q Consensus 4 W~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 83 (305)
|..+....-.+-...+.+.-+++.+++|++.. -+..-|. .+.|.+.. .+..|+...++.+-+
T Consensus 34 ~~~velp~~s~~l~ia~~~~g~~gwlVg~rgt------iletdd~--------g~tw~qal----~~~gr~~f~sv~f~~ 95 (339)
T COG4447 34 WTDVELPTLSPTLDIAFTESGSHGWLVGGRGT------ILETDDG--------GITWAQAL----DFLGRHAFHSVSFLG 95 (339)
T ss_pred ceeeeccccCcccceeEeecCcceEEEcCcce------EEEecCC--------cccchhhh----chhhhhheeeeeeec
Q ss_pred CEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc-cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEc
Q 021952 84 RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 162 (305)
Q Consensus 84 ~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~ 162 (305)
.+=.+.|=- +-++.-+-.-. +|.+++ ....|.+-.+ ....++..-+++|-++. +|.+
T Consensus 96 ~egw~vGe~-------sqll~T~DgGq----sWARi~~~e~~eg~~~s--I~f~d~q~g~m~gd~Ga---------il~T 153 (339)
T COG4447 96 MEGWIVGEP-------SQLLHTTDGGQ----SWARIPLSEKLEGFPDS--ITFLDDQRGEMLGDQGA---------ILKT 153 (339)
T ss_pred ccccccCCc-------ceEEEecCCCc----chhhchhhcCCCCCcce--eEEecchhhhhhcccce---------EEEe
Q ss_pred cccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEe
Q 021952 163 YEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG 204 (305)
Q Consensus 163 ~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 204 (305)
..+...|+.+ .....+.......+.. .++.++++|
T Consensus 154 ~DgGk~Wk~l------~e~~v~~~~~n~ia~s-~dng~vaVg 188 (339)
T COG4447 154 TDGGKNWKAL------VEKAVGLAVPNEIARS-ADNGYVAVG 188 (339)
T ss_pred cCCcccHhHh------cccccchhhhhhhhhh-ccCCeEEEe
No 137
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=23.68 E-value=6.3e+02 Score=23.92 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCceeEEe-cCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeC-CEEEEEcccCCC
Q 021952 73 RGAHAACCI-DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG-NRTVLFGGRGVG 150 (305)
Q Consensus 73 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~ 150 (305)
++..+++++ .++..+++||.+ + .+++|.+..+ .-.... ....-|..-+.+.+.. .+++..|-..
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~D--g----kvhvysl~g~----~l~ee~--~~~~h~a~iT~vaySpd~~yla~~Da~-- 508 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQD--G----KVHVYSLSGD----ELKEEA--KLLEHRAAITDVAYSPDGAYLAAGDAS-- 508 (603)
T ss_pred ccccceEEEcCCCCEEEEeccc--c----eEEEEEecCC----ccccee--eeecccCCceEEEECCCCcEEEEeccC--
Confidence 334444433 334677788863 2 2788888764 221111 2222344444444443 4555554332
Q ss_pred CcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCC
Q 021952 151 YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 223 (305)
Q Consensus 151 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~ 223 (305)
..+..||.++ +.= +.. .-..-.+|....+-. -+++++..|..+.. +++|+.+.
T Consensus 509 ----rkvv~yd~~s--~~~-~~~------~w~FHtakI~~~aWs-P~n~~vATGSlDt~------Viiysv~k 561 (603)
T KOG0318|consen 509 ----RKVVLYDVAS--REV-KTN------RWAFHTAKINCVAWS-PNNKLVATGSLDTN------VIIYSVKK 561 (603)
T ss_pred ----CcEEEEEccc--Cce-ecc------eeeeeeeeEEEEEeC-CCceEEEeccccce------EEEEEccC
Confidence 3477788776 322 110 001111222222211 46777888877643 88888874
No 138
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.31 E-value=4.6e+02 Score=22.14 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=39.9
Q ss_pred CEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEE
Q 021952 139 NRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV 218 (305)
Q Consensus 139 ~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 218 (305)
..+++-|+++ +.+..+|.+. +.-+.++ .+-..+-+-+++. ..++.+|.|-.++. +-.
T Consensus 113 sSVv~SgsfD------~s~r~wDCRS--~s~ePiQ--------ildea~D~V~Si~-v~~heIvaGS~DGt------vRt 169 (307)
T KOG0316|consen 113 SSVVASGSFD------SSVRLWDCRS--RSFEPIQ--------ILDEAKDGVSSID-VAEHEIVAGSVDGT------VRT 169 (307)
T ss_pred ceEEEecccc------ceeEEEEccc--CCCCccc--------hhhhhcCceeEEE-ecccEEEeeccCCc------EEE
Confidence 3567777765 4588899988 7766664 4445555555554 56676666655543 566
Q ss_pred EecCCC
Q 021952 219 LDTKAI 224 (305)
Q Consensus 219 ~d~~~~ 224 (305)
||+...
T Consensus 170 ydiR~G 175 (307)
T KOG0316|consen 170 YDIRKG 175 (307)
T ss_pred EEeecc
Confidence 776643
No 139
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=22.84 E-value=7.9e+02 Score=24.72 Aligned_cols=34 Identities=6% Similarity=0.118 Sum_probs=21.0
Q ss_pred eeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 77 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 77 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
+-+++++ .||+... .+.++.+|.+|+ ...|+.-+
T Consensus 189 TPlvvgg-~lYv~t~-------~~~V~ALDa~TG--k~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGD-TLYLCTP-------HNKVIALDAATG--KEKWKFDP 222 (764)
T ss_pred CCEEECC-EEEEECC-------CCeEEEEECCCC--cEEEEEcC
Confidence 3344555 8888643 245888888774 34677655
No 140
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=22.63 E-value=4.3e+02 Score=21.61 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=56.0
Q ss_pred CCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEe-cCCEEEEEeccCCCCCccCcE
Q 021952 24 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI-DNRKMVIHAGIGLYGLRLGDT 102 (305)
Q Consensus 24 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~ 102 (305)
++.||+.-- ....++++++ .+..-+.+.. +. ...++.. .++.+|+.... .+
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~-------~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~~--------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDP-------DTGEVEVIDL----PG---PNGMAFDRPDGRLYVADSG--------GI 62 (246)
T ss_dssp TTEEEEEET------TTTEEEEEET-------TTTEEEEEES----SS---EEEEEEECTTSEEEEEETT--------CE
T ss_pred CCEEEEEEc------CCCEEEEEEC-------CCCeEEEEec----CC---CceEEEEccCCEEEEEEcC--------ce
Confidence 466776621 1346888888 5555544342 12 2233333 45678886542 24
Q ss_pred EEEeccCCCCCcCeEEcccC--CC-CCccCCCeeEEEeCCEEEEEcccCCCCccc--ceeEEEEccc
Q 021952 103 WVLELSENFCFGSWQQLVTH--PS-PPARSGHSLTRIGGNRTVLFGGRGVGYEVL--NDVWFLDVYE 164 (305)
Q Consensus 103 ~~~d~~~~~~~~~W~~~~~~--~~-p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~--~~~~~~d~~~ 164 (305)
.++|+.++ +++.+... .. +..+.. -.++..++.+|+---........ ..+++++...
T Consensus 63 ~~~d~~~g----~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~ 124 (246)
T PF08450_consen 63 AVVDPDTG----KVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG 124 (246)
T ss_dssp EEEETTTT----EEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS
T ss_pred EEEecCCC----cEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCCC
Confidence 66698887 88877621 11 222222 24444467777753221111122 5689998873
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=21.83 E-value=6.4e+02 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=19.9
Q ss_pred CCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecC
Q 021952 184 SLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 222 (305)
Q Consensus 184 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~ 222 (305)
..|+.-+++++.-.++.+.+|+.++. +|..++.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~------I~~~~~~ 247 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGK------IFQNLLF 247 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcce------EEeeehh
Confidence 34555566665455667777877653 5666554
No 142
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.58 E-value=6.5e+02 Score=23.29 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=67.5
Q ss_pred cceeEEEECCEEEE---EccccCCCCCcccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEecc
Q 021952 16 FGHTCVVIGDCLVL---FGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI 92 (305)
Q Consensus 16 ~~~~~~~~~~~lyv---~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~ 92 (305)
..+++.-+++.+=+ +|-+.....+.+++|.+|-+ -+---++. |-.|..| -.++-.+++ .+|++-=.
T Consensus 378 n~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~-------lnvvGklt--Gl~~gER-IYAvRf~gd-v~yiVTfr 446 (603)
T COG4880 378 NSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDEN-------LNVVGKLT--GLAPGER-IYAVRFVGD-VLYIVTFR 446 (603)
T ss_pred hcccCcccceEEEEEeeecccccCCCccceeEEEcCC-------CcEEEEEe--ccCCCce-EEEEEEeCc-eEEEEEEe
Confidence 44555555555333 34555556678999999882 22222322 2223445 455555565 77776432
Q ss_pred CCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccc
Q 021952 93 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 164 (305)
Q Consensus 93 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~ 164 (305)
.++-+++.|+++- +=-++ .|.+--|-++.-..-++++.++=+|-.. + --.+-.||+..
T Consensus 447 -----qtDPlfviDlsNP----enPkv-lGeLKIPGfS~YLHpigen~~lGvG~~~-g---~vKiSLFdiSd 504 (603)
T COG4880 447 -----QTDPLFVIDLSNP----ENPKV-LGELKIPGFSEYLHPIGENRLLGVGAYQ-G---GVKISLFDISD 504 (603)
T ss_pred -----ccCceEEEEcCCC----CCCce-eEEEecCCchhhccccCCCcEEEeeccc-C---CceEEEEeccC
Confidence 3456889999874 21111 2333335555556677767777666443 1 12355666654
No 143
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=21.55 E-value=1.4e+02 Score=18.57 Aligned_cols=33 Identities=6% Similarity=-0.161 Sum_probs=19.3
Q ss_pred CeeEEEeCCEEEEEcccCCC-CcccceeEEEEcc
Q 021952 131 HSLTRIGGNRTVLFGGRGVG-YEVLNDVWFLDVY 163 (305)
Q Consensus 131 ~~~~~~~~~~i~v~GG~~~~-~~~~~~~~~~d~~ 163 (305)
+++++..+++|++.|-.... ...--.+.+|+..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 45666778999999865322 1222235566554
No 144
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=20.61 E-value=5.2e+02 Score=21.77 Aligned_cols=165 Identities=12% Similarity=0.023 Sum_probs=77.6
Q ss_pred CCCCcceeEEEECCEEEEEccccCCCCCcccceeecccccccccccceEEecccCCC---CCCCCCCcee--EEecCCEE
Q 021952 12 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSI---APPARGAHAA--CCIDNRKM 86 (305)
Q Consensus 12 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~p~~r~~~~~--~~~~~~~l 86 (305)
|-+-.|-..++.|+.+|.--. ..+.+..||+... ....+..++..+. .|-...+++- .+++++-|
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~----~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GL 135 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTR----SVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGL 135 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCC----cEEEEEECCccccccccceecCCCceEEEEEcCCCE
Confidence 444455555666777776432 2568999999322 1122444442211 1111112211 12344457
Q ss_pred EEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccc
Q 021952 87 VIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF 166 (305)
Q Consensus 87 yv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~ 166 (305)
+++=....+. -.--+-.+|+.+=.-.-+|.. ..+.+..+.+..++ +.+|+.-...... ..-.+.||+.+
T Consensus 136 WvIYat~~~~-g~ivvskld~~tL~v~~tw~T----~~~k~~~~naFmvC--GvLY~~~s~~~~~--~~I~yafDt~t-- 204 (250)
T PF02191_consen 136 WVIYATEDNN-GNIVVSKLDPETLSVEQTWNT----SYPKRSAGNAFMVC--GVLYATDSYDTRD--TEIFYAFDTYT-- 204 (250)
T ss_pred EEEEecCCCC-CcEEEEeeCcccCceEEEEEe----ccCchhhcceeeEe--eEEEEEEECCCCC--cEEEEEEECCC--
Confidence 7764432221 011234455543100013432 33444555544444 5899887664332 34467899988
Q ss_pred eeEEEeccccCCCCCCCCCCcceeEEEEE--eCCEEEEEe
Q 021952 167 FKWVQIPYELQNIPAGFSLPRVGHSATLI--LGGRVLIYG 204 (305)
Q Consensus 167 ~~W~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~G 204 (305)
++=..+. -.++.+-..++++.. .+.+||+.-
T Consensus 205 ~~~~~~~-------i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 GKEEDVS-------IPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cceecee-------eeeccccCceEeeeECCCCCeEEEEE
Confidence 5544442 123333333444332 356788775
No 145
>PRK02889 tolB translocation protein TolB; Provisional
Probab=20.40 E-value=6.6e+02 Score=22.87 Aligned_cols=187 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred ccceeecccccccccccceEEecccCCCCCCCCCCceeEEecCCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcc
Q 021952 41 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 120 (305)
..+|..|. ....-+.+.... .........-++++|++..-. .....+|++|+.++ +=..+.
T Consensus 176 ~~L~~~D~-------dG~~~~~l~~~~----~~v~~p~wSPDG~~la~~s~~----~~~~~I~~~dl~~g----~~~~l~ 236 (427)
T PRK02889 176 YQLQISDA-------DGQNAQSALSSP----EPIISPAWSPDGTKLAYVSFE----SKKPVVYVHDLATG----RRRVVA 236 (427)
T ss_pred cEEEEECC-------CCCCceEeccCC----CCcccceEcCCCCEEEEEEcc----CCCcEEEEEECCCC----CEEEee
Q ss_pred cCCCCCccCCCeeEEEeCCEEEEEcccCCCCcccceeEEEEccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEE
Q 021952 121 THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRV 200 (305)
Q Consensus 121 ~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 200 (305)
..+ ....+.....+++.+++....... .++|.+|+.+ ...+++ .............-.+..|
T Consensus 237 --~~~--g~~~~~~~SPDG~~la~~~~~~g~---~~Iy~~d~~~--~~~~~l---------t~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 237 --NFK--GSNSAPAWSPDGRTLAVALSRDGN---SQIYTVNADG--SGLRRL---------TQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred --cCC--CCccceEECCCCCEEEEEEccCCC---ceEEEEECCC--CCcEEC---------CCCCCCCcCeEEcCCCCEE
Q ss_pred EEEeccCCCCCccCcEEEEecCCCCccccccccccccccccccceeecccCcCCCCCceeeeeeeCCCcEEEEEcCccCC
Q 021952 201 LIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG 280 (305)
Q Consensus 201 ~v~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 280 (305)
+....... ..++|.+|.. .+..+++ ...........+-..++.|+........
T Consensus 299 ~f~s~~~g----~~~Iy~~~~~------------------~g~~~~l-----t~~g~~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 299 YFTSDRGG----APQIYRMPAS------------------GGAAQRV-----TFTGSYNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred EEEecCCC----CcEEEEEECC------------------CCceEEE-----ecCCCCcCceEECCCCCEEEEEEccCCc
Q ss_pred CcccCCCccccccCceeeEeeeec
Q 021952 281 LVQPADTSGLRFDGRLLLVELVPL 304 (305)
Q Consensus 281 ~~~~~~~~~~~~~~d~~~~~~~~~ 304 (305)
.+++.+++...
T Consensus 352 -------------~~I~v~d~~~g 362 (427)
T PRK02889 352 -------------FKLYVQDLATG 362 (427)
T ss_pred -------------EEEEEEECCCC
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=20.09 E-value=8.2e+02 Score=23.89 Aligned_cols=113 Identities=11% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCEEEEEeccCCCCCccCcEEEEeccCCCCCcCeEEcccCCCCCccCCCe--eEEEeCCEEEEEcccCCCCcccceeEEE
Q 021952 83 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS--LTRIGGNRTVLFGGRGVGYEVLNDVWFL 160 (305)
Q Consensus 83 ~~~lyv~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~ 160 (305)
++.++++|-. .++.+|.++-.. ..+=..+. ..|..+-..+ .-.+.++++++.- ...-+++.+
T Consensus 393 dg~~Ia~st~-------~~~~iy~L~~~~-~vk~~~v~--~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~ 456 (691)
T KOG2048|consen 393 DGNLIAISTV-------SRTKIYRLQPDP-NVKVINVD--DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEF 456 (691)
T ss_pred CCCEEEEeec-------cceEEEEeccCc-ceeEEEec--cchhhhccceeeEEEecCceEEEEe------cccceeEEE
Confidence 3356666543 334445544431 23444444 5565553333 3334456777764 112357788
Q ss_pred EccccceeEEEeccccCCCCCCCCCCcceeEEEEEeCCEEEEEeccCCCCCccCcEEEEecCCC
Q 021952 161 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 224 (305)
Q Consensus 161 d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~d~~~~ 224 (305)
++++ ..-..+. . .....-.+-..+-++.-.++.|-++++. .++++||+++.
T Consensus 457 el~~--ps~kel~-~---~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~ 507 (691)
T KOG2048|consen 457 ELET--PSFKELK-S---IQSQAKCPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETL 507 (691)
T ss_pred EecC--cchhhhh-c---cccccCCCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccc
Confidence 8877 4444442 0 0011011112222222256677777754 34999999965
Done!