Query 021953
Match_columns 305
No_of_seqs 117 out of 141
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2735 Phosphatidylserine syn 100.0 4E-110 9E-115 805.7 18.6 266 3-281 23-290 (466)
2 PLN02930 CDP-diacylglycerol-se 100.0 1E-108 2E-113 788.5 23.4 242 41-282 1-243 (353)
3 PF03034 PSS: Phosphatidyl ser 100.0 6.6E-87 1.4E-91 623.2 17.6 176 104-281 1-176 (280)
4 PF04892 VanZ: VanZ like famil 73.0 14 0.00031 29.9 6.5 59 187-255 64-128 (133)
5 PF06645 SPC12: Microsomal sig 45.4 37 0.00081 26.7 4.1 36 75-110 32-67 (76)
6 PF07895 DUF1673: Protein of u 42.0 1.1E+02 0.0023 28.2 7.1 78 39-123 50-140 (205)
7 PRK00159 putative septation in 42.0 1.6E+02 0.0036 24.2 7.4 18 38-55 29-46 (87)
8 PF06781 UPF0233: Uncharacteri 41.0 1.7E+02 0.0037 24.0 7.3 54 36-90 27-82 (87)
9 PF10268 Tmemb_161AB: Predicte 37.4 1.1E+02 0.0023 32.1 7.0 92 39-131 97-189 (486)
10 PF11457 DUF3021: Protein of u 34.8 2.2E+02 0.0048 23.4 7.4 62 77-138 72-133 (136)
11 PF06197 DUF998: Protein of un 34.5 1.3E+02 0.0028 25.4 6.1 29 99-127 125-153 (184)
12 PF02714 DUF221: Domain of unk 31.9 4.3E+02 0.0093 24.7 10.0 27 267-293 133-159 (325)
13 PRK02251 putative septation in 29.4 2.9E+02 0.0063 22.8 7.0 16 40-55 32-47 (87)
14 CHL00204 ycf1 Ycf1; Provisiona 27.1 89 0.0019 37.6 4.9 69 42-113 81-150 (1832)
15 KOG4112 Signal peptidase subun 27.0 1.3E+02 0.0028 25.5 4.6 33 77-109 49-81 (101)
16 PF10011 DUF2254: Predicted me 25.1 3.1E+02 0.0067 27.1 7.7 54 72-128 91-145 (371)
17 KOG1688 Golgi proteins involve 24.8 99 0.0021 28.8 3.8 29 109-146 63-91 (188)
18 COG5652 Predicted integral mem 24.7 48 0.001 29.7 1.8 111 115-250 8-133 (148)
19 PF00689 Cation_ATPase_C: Cati 24.4 1.5E+02 0.0033 25.0 4.8 15 3-17 25-39 (182)
20 KOG0252 Inorganic phosphate tr 24.1 4.5E+02 0.0098 28.2 8.9 127 106-247 221-361 (538)
21 TIGR03097 PEP_O_lig_1 probable 22.9 7.3E+02 0.016 24.4 10.6 18 123-140 114-131 (402)
22 PF07331 TctB: Tripartite tric 22.7 2.1E+02 0.0046 23.4 5.2 18 43-60 37-54 (141)
23 TIGR00947 2A73 probable bicarb 22.4 4.7E+02 0.01 26.2 8.4 21 43-63 36-56 (425)
24 TIGR00366 conserved hypothetic 21.9 5.6E+02 0.012 26.7 9.0 84 39-143 243-327 (438)
25 PF10777 YlaC: Inner membrane 20.2 73 0.0016 28.8 2.0 23 100-125 30-52 (155)
No 1
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-110 Score=805.68 Aligned_cols=266 Identities=49% Similarity=0.884 Sum_probs=246.0
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCcCCCcccccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHH
Q 021953 3 GNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIW 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ffykPhTit~L~v~~~~liy~a~~~~~e~~~~~~~~Nik~Gl~ 82 (305)
++|+++.|+.||.+...++ .+ ...+++.++|+|++|||||||||+|++++|.++|+|++.++| +++++|+|||++
T Consensus 23 ~~e~~~~r~~~r~e~~~~~-~~-~~~ne~~vdDit~dffykphTiTlL~i~~~~l~y~a~~~~~~---~~t~~N~~rGil 97 (466)
T KOG2735|consen 23 SVEPNGARKLRRDELHEKM-HF-RMINERVVDDITTDFFYKPHTITLLLILICFLIYKAFTGDTE---NTTETNVKRGIL 97 (466)
T ss_pred ccCCCCccchhhhhhhhhh-cc-CccceeeeccchhhheecCceehHHHHHHHHHHHHHHhCCCC---cchHHHHHHHHH
Confidence 4788888887775442222 22 233445589999999999999999999999999999998764 347899999999
Q ss_pred HHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC--CCCCcccccCCCcc
Q 021953 83 AMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG--VELPERSYGADCRI 160 (305)
Q Consensus 83 a~i~~Fl~~~~l~~pdgpf~RPHPa~WRiV~gl~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg--~~l~eksYa~nC~i 160 (305)
|++++||++|++|||||||+|||||+||+|||+||+|+++|+|+||||.+|+||+|+|+||+|| .++|||+||.||++
T Consensus 98 ~~i~~FL~~svlafpngpF~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wldPkl~~~~~l~EkeYg~nC~~ 177 (466)
T KOG2735|consen 98 AMIAVFLIISVLAFPNGPFIRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWLDPKLGGQIELPEKEYGVNCSI 177 (466)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheeeCcccCCCcccchhhhcCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cccCCCcccchhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhh
Q 021953 161 YVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNW 240 (305)
Q Consensus 161 ~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~ 240 (305)
|+|| |+|++ +|+|++|||+||++||++||||++||++||+||++|++|+|+||||+||||||||||||+|||
T Consensus 178 ~spd-------ri~sh-~D~Fa~aHf~GW~mKalLIR~~~lcw~iSI~wEltE~~f~hlLPNFaECWWD~iILDVLiCNg 249 (466)
T KOG2735|consen 178 YSPD-------RIWSH-LDIFAFAHFLGWAMKALLIRHWVLCWVISIMWELTELTFRHLLPNFAECWWDSIILDVLICNG 249 (466)
T ss_pred CCHH-------HHhhh-hhhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHheeccc
Confidence 9864 68887 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccccccccCCCCcchhHHHHHHHhh
Q 021953 241 FGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKVCFELIILD 281 (305)
Q Consensus 241 lGI~lGm~~~r~l~~k~Y~W~g~~~i~s~~gK~kR~~~~~~ 281 (305)
+|||+||++||+|+||+|+|+|+++|||++||+||+++||-
T Consensus 250 lGI~~Gmk~c~~L~mrty~W~sik~i~t~~GK~KR~~lQFT 290 (466)
T KOG2735|consen 250 LGIWAGMKTCRWLSMRTYHWESIKNIPTTRGKMKRAALQFT 290 (466)
T ss_pred chhhhHhHHHhhhcccceeeeeeccCcccchhHHHHhhccC
Confidence 99999999999999999999999999999999999999983
No 2
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=100.00 E-value=1.1e-108 Score=788.49 Aligned_cols=242 Identities=89% Similarity=1.547 Sum_probs=234.6
Q ss_pred cccchHHHHHHHHHHHHHHHhhccCCCC-CCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHH
Q 021953 41 AYKPRTISFLLIGACFLIWASGALDPQS-DSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 119 (305)
Q Consensus 41 fykPhTit~L~v~~~~liy~a~~~~~e~-~~~~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~WRiV~gl~vlY 119 (305)
+|||||||+|++++++++|++++.++++ ++.|+++|+|||+.|++++|++||++|+|||||+||||||||+|+|++|+|
T Consensus 1 ~y~phTit~l~~~~~~l~~~~~a~~~~~~~~~~~~~n~~~Gv~a~i~~fl~~~~lq~pdg~f~RPHPa~WR~v~gl~vlY 80 (353)
T PLN02930 1 AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 80 (353)
T ss_pred CCCCccHHHHHHHHHHHHheeccccCcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHH
Confidence 5999999999999999999988776543 356789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCcccchhhhhcccchHHHHHHHHHHHHHHHHhhh
Q 021953 120 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQ 199 (305)
Q Consensus 120 ll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~ 199 (305)
+++|+||||||+|||||+||++||+||+++|||+||+||++||||||+|+|+||+++++|+|++||++||++||+|+||+
T Consensus 81 l~~LvFLLFq~~~d~R~~l~~ldp~Lg~~lpE~~Y~~nC~~~tp~~p~~~~~ni~~~~~D~F~~aH~lGW~~KaliiRd~ 160 (353)
T PLN02930 81 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQ 160 (353)
T ss_pred HHHHHHHHhccHHHHHHHHHhcChhhCCCCcccccccCceecCCCCcchhHHHhhhcccceehHHHHHHHHHHHHHHhcH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhhHHHHHHHHHHhhccCcccccccccCCCCcchhHHHHHHH
Q 021953 200 PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKVCFELII 279 (305)
Q Consensus 200 ~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~r~l~~k~Y~W~g~~~i~s~~gK~kR~~~~ 279 (305)
++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|++++|+++||+||++.|
T Consensus 161 ~l~w~~SI~FEl~Elsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~~k~l~~k~Y~W~g~~~~~~~~gk~kR~l~q 240 (353)
T PLN02930 161 PLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQ 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHHHHHcCCccccccccCCCCcccchhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 021953 280 LDY 282 (305)
Q Consensus 280 ~~~ 282 (305)
+.-
T Consensus 241 FTP 243 (353)
T PLN02930 241 FTP 243 (353)
T ss_pred cCc
Confidence 864
No 3
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=100.00 E-value=6.6e-87 Score=623.23 Aligned_cols=176 Identities=58% Similarity=1.170 Sum_probs=174.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCcccchhhhhcccchHHH
Q 021953 104 PHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183 (305)
Q Consensus 104 PHPa~WRiV~gl~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~ 183 (305)
|||||||+|+|++|+|+++|+||||||+||||++|+++||+||+++|||+||+||+++++|||++. +||+++ +|+|++
T Consensus 1 PHPa~WR~v~g~~v~Y~~~L~fllfq~~~~~r~~l~~~dp~Lg~~~~e~~Ya~nC~~~~~~~p~~~-~ni~~~-~D~f~~ 78 (280)
T PF03034_consen 1 PHPAFWRIVFGLSVLYLLFLVFLLFQNRDDARQILKYLDPSLGKPLPEKSYAENCRIYTPENPESP-HNIWDT-FDIFVL 78 (280)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCcccCCCCCCcCccCCCeeCCCCCCCcc-hhhHhh-cchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 999999 799999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhhHHHHHHHHHHhhccCcccccccc
Q 021953 184 AHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGI 263 (305)
Q Consensus 184 aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~r~l~~k~Y~W~g~ 263 (305)
||++||++||+++||+++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|+
T Consensus 79 aH~~GW~~Kali~Rd~~l~w~~Si~fE~~Elsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~~~~l~~k~Y~W~g~ 158 (280)
T PF03034_consen 79 AHFLGWFGKALILRDWWLCWILSIAFELLELSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKTCRYLEMKEYDWRGI 158 (280)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHhh
Q 021953 264 SRQPNIIGKVCFELIILD 281 (305)
Q Consensus 264 ~~i~s~~gK~kR~~~~~~ 281 (305)
+++||++||+||+++|+.
T Consensus 159 ~~~~~~~gk~kr~~~QFt 176 (280)
T PF03034_consen 159 RDIPTYRGKLKRALLQFT 176 (280)
T ss_pred ccCCchhHHHHHHHHccC
Confidence 999999999999999986
No 4
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=73.01 E-value=14 Score=29.93 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHHHHHHHHHh--hh----hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhhHHHHHHHHHHhhccC
Q 021953 187 FGWWGKAILIR--NQ----PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDG 255 (305)
Q Consensus 187 ~GW~~KaliiR--d~----~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~r~l~~ 255 (305)
+|+..-...-| .+ .+|-.+|+..|+. |-.+|.- ..- +-|+ ++|++|..+|..+.+.+.-
T Consensus 64 lG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~----Q~~~~~r-~~d----~~Dv-~~n~~G~~lG~~l~~~~~~ 128 (133)
T PF04892_consen 64 LGFLLPLLFRRLRSWLLAILIGFLFSLFIELI----QLFLPGR-SFD----IDDV-LANTLGALLGYLLYRLIRK 128 (133)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHH----hccCCCC-CCC----HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45555444432 33 3455667777766 6666655 222 3455 7899999999998877643
No 5
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.41 E-value=37 Score=26.69 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.6
Q ss_pred hhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHH
Q 021953 75 TSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWR 110 (305)
Q Consensus 75 ~Nik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR 110 (305)
+|.+..+.+.++.+++-.++..|+=|+-|-||.=|.
T Consensus 32 q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~ 67 (76)
T PF06645_consen 32 QSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWL 67 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCC
Confidence 457777777777777777788999999999998774
No 6
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=41.99 E-value=1.1e+02 Score=28.17 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=44.0
Q ss_pred cccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhcc----------CCCCcccCCChh-
Q 021953 39 AWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQ----------APSTVLIRPHPA- 107 (305)
Q Consensus 39 ~ffykPhTit~L~v~~~~liy~a~~~~~e~~~~~~~~Nik~Gl~a~i~~Fl~~~~l~----------~pdgpf~RPHPa- 107 (305)
.|+.|-|+-+++.-.+..++|+-.... ..-|...+++++.++.+.+++.. ....|.+|++.-
T Consensus 50 ~~~~~~~~~~Ll~~~f~T~~~~L~i~~-------~gin~~~~ll~g~~~~L~~~i~~wk~~~~~~d~i~k~~v~~~~~k~ 122 (205)
T PF07895_consen 50 GWFRKRSNRILLINIFFTLVYFLVISQ-------LGINLHLFLLAGLILSLYLYIFSWKKQMIRYDDIAKKPVIRNSNKK 122 (205)
T ss_pred ceeeeccceeeHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchh
Confidence 777777777666655555555421110 11233366777777666666554 345788888776
Q ss_pred --HHHHHHHHHHHHHHHH
Q 021953 108 --IWRLVHGMAVVYLVAL 123 (305)
Q Consensus 108 --~WRiV~gl~vlYll~L 123 (305)
+|-+...+..++++..
T Consensus 123 ~~~~~l~~i~~~i~l~~~ 140 (205)
T PF07895_consen 123 KRFRLLLVIILLIILVMF 140 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5555555555544433
No 7
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=41.99 E-value=1.6e+02 Score=24.24 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.0
Q ss_pred ccccccchHHHHHHHHHH
Q 021953 38 TAWAYKPRTISFLLIGAC 55 (305)
Q Consensus 38 ~~ffykPhTit~L~v~~~ 55 (305)
..=-|.|--+.+++++++
T Consensus 29 sp~W~~~~m~glm~~Gll 46 (87)
T PRK00159 29 SSVWYVVLMLGLMLIGLA 46 (87)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 334458988888888776
No 8
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=40.98 E-value=1.7e+02 Score=24.00 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred CcccccccchHHHHHHHHHHHH-HHHhhccC-CCCCCCccchhhhhhHHHHHHHHHh
Q 021953 36 PWTAWAYKPRTISFLLIGACFL-IWASGALD-PQSDSGDVVTSVKRGIWAMIAVFLT 90 (305)
Q Consensus 36 ~~~~ffykPhTit~L~v~~~~l-iy~a~~~~-~e~~~~~~~~Nik~Gl~a~i~~Fl~ 90 (305)
....=-|.|--+++++++++-+ +|+....+ +.- ++=-.-|+-.|.-.+++-|++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi-~~lG~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPI-PDLGNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCc-ccccchHHHHHHHHHHHHHHH
Confidence 3344446999998888877633 33322221 111 111124777776666655554
No 9
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=37.43 E-value=1.1e+02 Score=32.13 Aligned_cols=92 Identities=8% Similarity=0.134 Sum_probs=41.8
Q ss_pred cccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCC-hhHHHHHHHHHH
Q 021953 39 AWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPH-PAIWRLVHGMAV 117 (305)
Q Consensus 39 ~ffykPhTit~L~v~~~~liy~a~~~~~e~~~~~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgpf~RPH-Pa~WRiV~gl~v 117 (305)
--+|.=+.-.+.+...+..+|........-.+...+.|+.. +++...++.+..++..=...+.|-. ++=+.+....+.
T Consensus 97 L~~Y~ey~WLvdFav~~~~Vyl~tE~y~~~~~~~~e~Nisv-~w~lL~v~F~lk~L~sLt~~yf~s~~~gErs~~l~~gf 175 (486)
T PF10268_consen 97 LRYYTEYQWLVDFAVYALVVYLFTEVYYFFVPPSTEFNISV-VWCLLVVFFALKVLFSLTRLYFSSEEGGERSVCLAFGF 175 (486)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccchHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhHHHHH
Confidence 34577777766666666666654311110001223345543 3433332212111111001111211 245677888877
Q ss_pred HHHHHHHHHhccCh
Q 021953 118 VYLVALTFLLFQKR 131 (305)
Q Consensus 118 lYll~LvFLLFQ~~ 131 (305)
+|+++-.+++..+.
T Consensus 176 ~~fl~am~vliv~e 189 (486)
T PF10268_consen 176 FFFLLAMFVLIVDE 189 (486)
T ss_pred HHHHHHHHHhhccc
Confidence 77776666655443
No 10
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=34.84 E-value=2.2e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 021953 77 VKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFM 138 (305)
Q Consensus 77 ik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~WRiV~gl~vlYll~LvFLLFQ~~~daR~~l 138 (305)
.++-+.-.+..++++..+..-.|=|..==++++-......++|++.-...-.|++.|+|++=
T Consensus 72 ~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~~~~~fi~IYliIw~~~y~~~k~~i~kiN 133 (136)
T PF11457_consen 72 LKQTIIHFIITYAIFLILAYLLGWFPLSVISLLIFILIFIIIYLIIWLIFYLYWKKDIKKIN 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443322477887888889999999999999999999873
No 11
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=34.55 E-value=1.3e+02 Score=25.44 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=13.9
Q ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHHh
Q 021953 99 TVLIRPHPAIWRLVHGMAVVYLVALTFLL 127 (305)
Q Consensus 99 gpf~RPHPa~WRiV~gl~vlYll~LvFLL 127 (305)
....|..++.-|...+++++=...+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
T PF06197_consen 125 SLRRRRRWARRRLFSAVALLLFVALLLLF 153 (184)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554444444443
No 12
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.95 E-value=4.3e+02 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.5
Q ss_pred CCcchhHHHHHHHhhhHHHHhhhhccc
Q 021953 267 PNIIGKVCFELIILDYSFLLASLLLID 293 (305)
Q Consensus 267 ~s~~gK~kR~~~~~~~~~~~~~~~~~~ 293 (305)
+.++.+..|.++.-=+-|++.|.++++
T Consensus 133 ~~s~S~~~~sv~~k~f~f~~~n~~lv~ 159 (325)
T PF02714_consen 133 HKSRSEVERSVLRKLFFFLFFNVFLVP 159 (325)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788877888888888775
No 13
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=29.38 E-value=2.9e+02 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=11.9
Q ss_pred ccccchHHHHHHHHHH
Q 021953 40 WAYKPRTISFLLIGAC 55 (305)
Q Consensus 40 ffykPhTit~L~v~~~ 55 (305)
=-|.|--+.+++++++
T Consensus 32 ~W~~~~m~~lm~~Gl~ 47 (87)
T PRK02251 32 RWFVPLFVALMIIGLI 47 (87)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3358888888887776
No 14
>CHL00204 ycf1 Ycf1; Provisional
Probab=27.12 E-value=89 Score=37.61 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHHHHHhhcc-CCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHH
Q 021953 42 YKPRTISFLLIGACFLIWASGAL-DPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVH 113 (305)
Q Consensus 42 ykPhTit~L~v~~~~liy~a~~~-~~e~~~~~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~WRiV~ 113 (305)
-||||||+|++--+.+=++-... +..+ -.++..|.-|.+-.-++ ||-=-++|+= .||+=|-|.+=|+|.
T Consensus 81 gRPHtITvL~lPYllFhffw~n~K~ff~-y~stt~nSmrn~~iq~v-FlnnlifQl~-N~~iLpss~LaRLvn 150 (1832)
T CHL00204 81 GRPHTITVLALPYLLFHFFWNNHKHFFD-YGSTTRNSMRNLSIQCV-FLNNLIFQLF-NHFILPSSMLARLVN 150 (1832)
T ss_pred cCchhhHHHHHHHHHHHHHHhcCCCccc-cCCCccccccchhHHHH-HHhhHHHHHh-hHhhcccHHHHHHHH
Confidence 58999999876433331121111 1111 11122244444433332 3222222332 367888888888765
No 15
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.97 E-value=1.3e+02 Score=25.50 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHhhhhccCCCCcccCCChhHH
Q 021953 77 VKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIW 109 (305)
Q Consensus 77 ik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~W 109 (305)
...-+.++.+.|..=+.+..|-=|+-|-||-.|
T Consensus 49 ls~tvy~vg~~~v~t~li~LPpwP~y~rn~LkW 81 (101)
T KOG4112|consen 49 LSVTVYIVGAGFVFTLLITLPPWPWYRRNPLKW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhcCcccc
Confidence 444556666666677778899999999999877
No 16
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=25.15 E-value=3.1e+02 Score=27.09 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=35.7
Q ss_pred ccchhhhhhHHHHHHHHHhhhhccCCCCcc-cCCChhHHHHHHHHHHHHHHHHHHHhc
Q 021953 72 DVVTSVKRGIWAMIAVFLTYCLLQAPSTVL-IRPHPAIWRLVHGMAVVYLVALTFLLF 128 (305)
Q Consensus 72 ~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgpf-~RPHPa~WRiV~gl~vlYll~LvFLLF 128 (305)
|...-.-.|++.+.++|.+.+....+++-. ..|+-+ +..++.+.-.++..|+.|
T Consensus 91 d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~---~~~a~~l~i~~v~~li~f 145 (371)
T PF10011_consen 91 DRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLS---VFIALALAILSVVLLIYF 145 (371)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHccccccccCcchH---HHHHHHHHHHHHHHHHHH
Confidence 344556678888888888888888877665 356555 555555555555555554
No 17
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.80 E-value=99 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC
Q 021953 109 WRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG 146 (305)
Q Consensus 109 WRiV~gl~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg 146 (305)
|=+|--..-+|++= .|+.|.++. .||+++
T Consensus 63 ~YII~Y~LgIYlLN-lfiaFLtPk--------~Dp~~~ 91 (188)
T KOG1688|consen 63 FYIITYALGIYLLN-LFIAFLTPK--------VDPELQ 91 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCC--------CCchhh
Confidence 44444444445543 356666666 888884
No 18
>COG5652 Predicted integral membrane protein [Function unknown]
Probab=24.70 E-value=48 Score=29.68 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCcccchhhhhcccchHHHHHHHHHHHHHH
Q 021953 115 MAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAI 194 (305)
Q Consensus 115 l~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~Kal 194 (305)
.+++|+..+-++--|++|.+|+-+-..+=..-.+ +.+|. |..|.++.+..++ -.||++|.+.+++
T Consensus 8 ~~i~~~~~v~~~s~~Pp~~~r~~l~v~~fl~~~~------~~~~~---~~~~~~~~~~~~~------k~aH~~~Yf~lg~ 72 (148)
T COG5652 8 AGILWMKLVFPFSSQPPDSYRLTLLVHNFLSVYD------ALKPL---PPRPLPVVNHRID------KLAHFLGYFSLGI 72 (148)
T ss_pred HHhhHHhhccccCCCChhHhhhhchHHHHHHHHH------HhccC---CCCCCCcccchHH------HHHHHHHHHHHHH
Confidence 4456666666666677765554433222110000 22232 1222222334444 4699999999985
Q ss_pred HH----hhh-----------hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhhHHHHHHHHHH
Q 021953 195 LI----RNQ-----------PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTV 250 (305)
Q Consensus 195 ii----Rd~-----------~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~ 250 (305)
++ |+. .+|..++++.|.-...+ |- =++-+-|| +.|.+|-.+|+...
T Consensus 73 l~f~ls~~~r~~~~~ai~av~i~~~~~~ldE~~Q~f~----PG-----R~~sl~Dv-i~d~iGA~lg~~~~ 133 (148)
T COG5652 73 LLFGLSRSTRLTGVIAIAAVFIGTLYGILDEVHQTFL----PG-----RAASLVDV-IADTIGAVLGHIWE 133 (148)
T ss_pred HhheeecccccceeehhhHHHHHHHHHHHHHHHHhhc----CC-----cchHHHHH-HHHHhhhheeeeEE
Confidence 53 222 46888889988876554 32 14567898 67889999887653
No 19
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=24.42 E-value=1.5e+02 Score=25.03 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=6.1
Q ss_pred CCCCCCCCCcccccc
Q 021953 3 GNEPNGHRGVRRKDH 17 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (305)
|+|+..++-++|++.
T Consensus 25 ~~e~~~~~im~r~Pr 39 (182)
T PF00689_consen 25 GFEPPDPDIMKRPPR 39 (182)
T ss_dssp GGSS-STTGGGS---
T ss_pred hcCcchhhhhhcccc
Confidence 456665555555443
No 20
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=24.13 E-value=4.5e+02 Score=28.19 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHcCC-----CCCCCCc-ccccCCCcccccCCCcccchhhhhccc
Q 021953 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQF-MKFLHPD-----LGVELPE-RSYGADCRIYVHENPTSRFKNVYETLF 178 (305)
Q Consensus 106 Pa~WRiV~gl~vlYll~LvFLLFQ~~~daR~~-l~~ldP~-----Lg~~l~e-ksYa~nC~i~tp~~p~~~~~ni~~~~~ 178 (305)
-.+||+++|++.+--+.....=---+|++|.- |.-=||+ ..++++. -+-+++-+. +...|.+.+.
T Consensus 221 d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~-~~~~~~~~~~------- 292 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAES-DVPPPSNSFG------- 292 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcccc-CCCCcccccc-------
Confidence 47999999999887665554444455555544 1111322 2222211 000111111 1112222222
Q ss_pred chHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHH----hh--hcCCCCcchhhhHHHHHHHHhhhHHHHHHH
Q 021953 179 DEFVLAHIFGWWGKAILIRNQPLLWL-LSIGFELMELT----FR--HMLPNFNECWWDSIILDILICNWFGIWAGM 247 (305)
Q Consensus 179 DiF~~aH~~GW~~KaliiRd~~l~w~-~SI~fEl~Els----f~--H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm 247 (305)
-+..||.-|-+|-++- --.+|+ +.|+|==.-+- ++ -+.|-=+|= |.+.++..-|.+=+.+|-
T Consensus 293 --~F~~~f~~~hg~~Llg--t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~ 361 (538)
T KOG0252|consen 293 --LFSRLFLRWHGKHLLG--TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCST 361 (538)
T ss_pred --hHHHHHHHHHHHHHHH--HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHcc
Confidence 2456777776665442 234454 44544322222 23 345666666 788888887776555543
No 21
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=22.95 E-value=7.3e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.8
Q ss_pred HHHHhccChHHHHHHHHH
Q 021953 123 LTFLLFQKRDDARQFMKF 140 (305)
Q Consensus 123 LvFLLFQ~~~daR~~l~~ 140 (305)
+...+..++++.|.++.-
T Consensus 114 ~~~~l~~~~~~l~~l~~~ 131 (402)
T TIGR03097 114 VTLMLISDRQRLHWLLWV 131 (402)
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 344556788888877653
No 22
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=22.74 E-value=2.1e+02 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=9.5
Q ss_pred cchHHHHHHHHHHHHHHH
Q 021953 43 KPRTISFLLIGACFLIWA 60 (305)
Q Consensus 43 kPhTit~L~v~~~~liy~ 60 (305)
=|..+..+.+..+++...
T Consensus 37 fP~~l~~~l~~~~~~l~~ 54 (141)
T PF07331_consen 37 FPRLLGILLLILSLLLLV 54 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366666665544444333
No 23
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=22.35 E-value=4.7e+02 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHHHHHHhhc
Q 021953 43 KPRTISFLLIGACFLIWASGA 63 (305)
Q Consensus 43 kPhTit~L~v~~~~liy~a~~ 63 (305)
.|.+...+++.+|...+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (425)
T TIGR00947 36 VSTTGLGLVLAACGALWLLLT 56 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 455555566656655555443
No 24
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=21.91 E-value=5.6e+02 Score=26.70 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=47.2
Q ss_pred cccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHH
Q 021953 39 AWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVV 118 (305)
Q Consensus 39 ~ffykPhTit~L~v~~~~liy~a~~~~~e~~~~~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgpf~RPHPa~WRiV~gl~vl 118 (305)
|+....+-++++ ++++.+.|....+...+ .+. ++=.+-++|++-+.+. ..+|.--.=-+.-|+.-+
T Consensus 243 e~le~S~~l~~l-ig~lg~~y~~~~F~~~g--~~l------~LN~vN~~Fl~~Gil~-----~~tp~~~~~a~~~g~~~~ 308 (438)
T TIGR00366 243 EKLENSRVLALL-IGALGIIYLGMYFYEKG--FNL------TLNSVNLIFLIVGLLL-----HKTPMAYMRAITRAARSV 308 (438)
T ss_pred HHHhcCHHHHHH-HHHHHHHHHHHHHHhcC--Ccc------chHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHH
Confidence 888888888865 56667777765442211 112 2333446677766665 344543333344555433
Q ss_pred -HHHHHHHHhccChHHHHHHHHHHcC
Q 021953 119 -YLVALTFLLFQKRDDARQFMKFLHP 143 (305)
Q Consensus 119 -Yll~LvFLLFQ~~~daR~~l~~ldP 143 (305)
..++.+++ +|+++..++-
T Consensus 309 ~gi~l~fpf-------~agI~~im~~ 327 (438)
T TIGR00366 309 AGILVQFPF-------YAGIMGMMEH 327 (438)
T ss_pred HHHHHHHHH-------HHHHHHHHcC
Confidence 44444444 8888888854
No 25
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=20.20 E-value=73 Score=28.84 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=13.2
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHH
Q 021953 100 VLIRPHPAIWRLVHGMAVVYLVALTF 125 (305)
Q Consensus 100 pf~RPHPa~WRiV~gl~vlYll~LvF 125 (305)
.|+|-||..| .|+-+.|+..++.
T Consensus 30 ~Fi~~HP~L~---~~M~~~y~~~~~l 52 (155)
T PF10777_consen 30 SFIRNHPYLC---LAMYAAYLAVAAL 52 (155)
T ss_pred HHHHhCcHHH---HHHHHHHHHHHHH
Confidence 3666777766 4555555554443
Done!