Query 021953
Match_columns 305
No_of_seqs 117 out of 141
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_B Na+,K+-ATPase beta subu 10.9 2.5E+02 0.0085 26.3 4.5 54 37-106 13-84 (305)
2 1uwd_A Hypothetical protein TM 8.1 1.8E+02 0.0062 22.0 2.0 25 130-154 7-32 (103)
3 1wex_A Hypothetical protein (r 8.0 1.9E+02 0.0065 21.8 2.1 43 124-166 54-99 (104)
4 3arc_T Photosystem II reaction 6.9 4.3E+02 0.015 17.3 3.1 18 50-67 9-27 (32)
5 2oix_A Xanthomonas outer prote 6.6 2.1E+02 0.0072 24.0 1.9 26 256-281 157-182 (186)
6 1rh5_C Secbeta; protein transl 6.6 4.1E+02 0.014 18.9 3.1 39 20-60 8-46 (53)
7 2klu_A T-cell surface glycopro 6.4 7.1E+02 0.024 18.9 4.5 29 99-128 1-29 (70)
8 1jb0_K Photosystem 1 reaction 6.3 1.3E+02 0.0043 23.7 0.3 20 233-252 17-36 (83)
9 1pxv_A Cysteine protease; hydr 6.3 2.5E+02 0.0086 24.9 2.2 20 132-151 51-71 (183)
10 3ar4_A Sarcoplasmic/endoplasmi 6.0 2.1E+03 0.071 22.5 10.7 108 28-144 879-994 (995)
No 1
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=10.93 E-value=2.5e+02 Score=26.28 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=21.1
Q ss_pred cccccccchHHHHHH-----HHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhccC-------------CC
Q 021953 37 WTAWAYKPRTISFLL-----IGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQA-------------PS 98 (305)
Q Consensus 37 ~~~ffykPhTit~L~-----v~~~~liy~a~~~~~e~~~~~~~~Nik~Gl~a~i~~Fl~~~~l~~-------------pd 98 (305)
.-.|+|.|.|=++|. -+-+++.|.++ .+++|+++.++++.++|. +-
T Consensus 13 ~k~f~~n~~~~~~lGRT~~sW~~IllFYliF----------------Y~~La~lF~~~m~v~l~tl~~~~Pk~q~~i~~P 76 (305)
T 2zxe_B 13 WKKFLWDSEKKEFLGRTGSSWFKIFLFYLIF----------------YGCLAGIFIGTIQVLLLTLSDFEPKYQDRVAPP 76 (305)
T ss_dssp ---------------CCSTTHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHTSCSSSCSCCTTTCSC
T ss_pred hhhheeCcccCeEecccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHccccCCccccCCCCC
Confidence 447889988877664 12233444433 235555555555555543 33
Q ss_pred CcccCCCh
Q 021953 99 TVLIRPHP 106 (305)
Q Consensus 99 gpf~RPHP 106 (305)
|.-.||.|
T Consensus 77 GL~~~P~~ 84 (305)
T 2zxe_B 77 GLSHAPYA 84 (305)
T ss_dssp CBCCSSCC
T ss_pred eeeEecCC
Confidence 88999998
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=8.10 E-value=1.8e+02 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=19.5
Q ss_pred ChHHHHHHHH-HHcCCCCCCCCcccc
Q 021953 130 KRDDARQFMK-FLHPDLGVELPERSY 154 (305)
Q Consensus 130 ~~~daR~~l~-~ldP~Lg~~l~eksY 154 (305)
+.+++++.|+ ..||++|..+.+-..
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~ 32 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGL 32 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTC
T ss_pred hHHHHHHHHcCCCCCCCCcChhhcCC
Confidence 5678999997 559999998876543
No 3
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=7.97 E-value=1.9e+02 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHhccChHHHHHHHHHHcC---CCCCCCCcccccCCCcccccCCC
Q 021953 124 TFLLFQKRDDARQFMKFLHP---DLGVELPERSYGADCRIYVHENP 166 (305)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP---~Lg~~l~eksYa~nC~i~tp~~p 166 (305)
.|.-|.+.++|.+.++.++- .++...-.-+|+..=....|.|+
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~ 99 (104)
T 1wex_A 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCCCC
Confidence 78889999999999998853 35433334566666555555554
No 4
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.88 E-value=4.3e+02 Score=17.30 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHHHHH-HHHHHhhccCCC
Q 021953 50 LLIGAC-FLIWASGALDPQ 67 (305)
Q Consensus 50 L~v~~~-~liy~a~~~~~e 67 (305)
+++++. ++.++.+.++|+
T Consensus 9 ll~~tlgiiFFAI~FRePP 27 (32)
T 3arc_T 9 IFACIIALFFFAIFFREPP 27 (32)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhhhcCCC
Confidence 344444 444444667664
No 5
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=6.60 E-value=2.1e+02 Score=24.02 Aligned_cols=26 Identities=8% Similarity=-0.147 Sum_probs=20.8
Q ss_pred cccccccccCCCCcchhHHHHHHHhh
Q 021953 256 KTYEWVGISRQPNIIGKVCFELIILD 281 (305)
Q Consensus 256 k~Y~W~g~~~i~s~~gK~kR~~~~~~ 281 (305)
...+|...++++..|..+++.+++++
T Consensus 157 ~~~~~~~~~~i~~~R~~i~~lI~~~~ 182 (186)
T 2oix_A 157 DYAGGRDLTDIEPDRGLIRDRLAQAE 182 (186)
T ss_dssp TSTTTTCBTTCCCCHHHHHHHHHCC-
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 45678888889999999999988775
No 6
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.57 E-value=4.1e+02 Score=18.87 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=16.9
Q ss_pred ccCCCCCCCCCCCcCCCcccccccchHHHHHHHHHHHHHHH
Q 021953 20 QENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWA 60 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~D~~~~ffykPhTit~L~v~~~~liy~ 60 (305)
.+.+..++-.|-|++|. ..==.|.++..+.+++.+++.+
T Consensus 8 ~~~ssaGLvryy~ee~~--giKi~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 8 GLATSAGLIRYMDETFS--KIRVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp -------------CCCC--SCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhhhhccCC--ccccCCeehhhhHHHHHHHHHH
Confidence 45566677777777766 4445899998776665555443
No 7
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=6.38 E-value=7.1e+02 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=22.7
Q ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHHhc
Q 021953 99 TVLIRPHPAIWRLVHGMAVVYLVALTFLLF 128 (305)
Q Consensus 99 gpf~RPHPa~WRiV~gl~vlYll~LvFLLF 128 (305)
||+.+.-|.+= +|+|-++..+++..+-.|
T Consensus 1 ~~l~~~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 1 GPLVPRGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CCSSCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 67778888777 888888887777777766
No 8
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=6.27 E-value=1.3e+02 Score=23.65 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.0
Q ss_pred HHHHHhhhHHHHHHHHHHhh
Q 021953 233 LDILICNWFGIWAGMHTVRY 252 (305)
Q Consensus 233 LDVL~CN~lGI~lGm~~~r~ 252 (305)
+=.++||.+.|.+|-.+.|+
T Consensus 17 iIMI~cN~lai~igk~~I~~ 36 (83)
T 1jb0_K 17 LVVILCNLFAIALGRYAIQS 36 (83)
T ss_dssp ---CHHHHHHHHHHHC-CCC
T ss_pred eeehhHHHHHHHHHHHHHcC
Confidence 33578999999999888754
No 9
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=6.26 E-value=2.5e+02 Score=24.85 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCC-CCCCc
Q 021953 132 DDARQFMKFLHPDLG-VELPE 151 (305)
Q Consensus 132 ~daR~~l~~ldP~Lg-~~l~e 151 (305)
-.|+++|+.+.|++. .+++.
T Consensus 51 ~nA~~iMr~~yPN~s~~~l~~ 71 (183)
T 1pxv_A 51 YNAHDIMRTLYPEVSEQDLPN 71 (183)
T ss_dssp CCHHHHHHHHSTTSCTTTGGG
T ss_pred CCHHHHHHHHCCCCChhHHhh
Confidence 359999999999995 34543
No 10
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=6.03 E-value=2.1e+03 Score=22.52 Aligned_cols=108 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCCCcCCCccccc--ccchHHHHHHHHHHHHHHHhhccCCCCC--CCccchhhhhhHHHHHHHHHhhhhccCCCCc---
Q 021953 28 SSGSDELDPWTAWA--YKPRTISFLLIGACFLIWASGALDPQSD--SGDVVTSVKRGIWAMIAVFLTYCLLQAPSTV--- 100 (305)
Q Consensus 28 ~~~~~~~D~~~~ff--ykPhTit~L~v~~~~liy~a~~~~~e~~--~~~~~~Nik~Gl~a~i~~Fl~~~~l~~pdgp--- 100 (305)
+..++..+....+| .+..|+....++++-+...-..+..... ....-.|...-+..++.+.+.+.+++.|-..
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~r~~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f 958 (995)
T 3ar4_A 879 EDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIF 958 (995)
T ss_dssp SCCSCCSCSCCCGGGCHHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTHHHHHT
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred -ccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCC
Q 021953 101 -LIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPD 144 (305)
Q Consensus 101 -f~RPHPa~WRiV~gl~vlYll~LvFLLFQ~~~daR~~l~~ldP~ 144 (305)
+..+.+..|-++.++++++++. +++++.++.-.|+
T Consensus 959 ~~~~l~~~~w~~~~~~~~~~~~~---------~e~~k~~~r~~~~ 994 (995)
T 3ar4_A 959 KLKALDLTQWLMVLKISLPVIGL---------DEILKFIARNYLE 994 (995)
T ss_dssp TCCCCCHHHHHHHHHHHTHHHHH---------HHHHHHHHHHSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHhhcCCC
Done!