Query 021953
Match_columns 305
No_of_seqs 117 out of 141
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 11:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021953.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021953hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0k_ f.30.1.1 (K:) Photosys 13.4 21 0.0016 24.6 0.3 18 236-253 1-18 (58)
2 d1pxva_ d.3.1.1 (A:) Staphopai 11.8 51 0.0037 27.1 2.2 19 133-151 52-71 (183)
3 d1oqca_ a.24.15.1 (A:) Augment 9.6 43 0.0031 24.4 0.9 14 106-119 12-25 (112)
4 d1jr8a_ a.24.15.1 (A:) Thiol o 8.1 54 0.004 23.7 0.9 14 106-119 10-23 (105)
5 d1orsc_ f.14.1.1 (C:) Potassiu 6.5 2.6E+02 0.019 20.3 4.3 39 104-142 4-43 (132)
6 d1wexa_ d.58.7.1 (A:) Heteroge 6.4 1.6E+02 0.011 20.2 2.8 42 124-165 54-98 (104)
7 d2d6fa1 b.38.3.1 (A:2-73) Glut 6.3 81 0.0059 22.3 1.0 16 268-283 1-16 (72)
8 d1b7fa1 d.58.7.1 (A:123-204) S 6.2 82 0.006 20.5 1.0 20 124-143 47-66 (82)
9 d1t77a2 b.55.1.6 (A:2076-2185) 6.1 90 0.0065 22.8 1.3 22 124-146 88-109 (110)
10 d1kzqa2 b.6.2.1 (A:132-255) Ma 5.6 80 0.0058 23.8 0.7 13 216-228 64-76 (124)
No 1
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=13.36 E-value=21 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.5
Q ss_pred HHhhhHHHHHHHHHHhhc
Q 021953 236 LICNWFGIWAGMHTVRYF 253 (305)
Q Consensus 236 L~CN~lGI~lGm~~~r~l 253 (305)
++||.+.|.+|-.+.|+=
T Consensus 1 I~cN~lai~ig~~tI~~p 18 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAIQSR 18 (58)
T ss_dssp CHHHHHHHHHHHC-CCCS
T ss_pred CeehhHHHHHHHHHHcCC
Confidence 379999999999988763
No 2
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}
Probab=11.76 E-value=51 Score=27.11 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCC-CCCCc
Q 021953 133 DARQFMKFLHPDLG-VELPE 151 (305)
Q Consensus 133 daR~~l~~ldP~Lg-~~l~e 151 (305)
.|+++|++|.|+|. ..++.
T Consensus 52 ~A~~iMR~lyPn~s~~~l~~ 71 (183)
T d1pxva_ 52 NAHDIMRTLYPEVSEQDLPN 71 (183)
T ss_dssp CHHHHHHHHSTTSCTTTGGG
T ss_pred CHHHHHHHhCCCcccchhhh
Confidence 39999999999984 44554
No 3
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.60 E-value=43 Score=24.41 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHH
Q 021953 106 PAIWRLVHGMAVVY 119 (305)
Q Consensus 106 Pa~WRiV~gl~vlY 119 (305)
|+.|+++|.++.-|
T Consensus 12 p~~W~~lH~ia~~y 25 (112)
T d1oqca_ 12 RNTWAFLHTLAAYY 25 (112)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999988765
No 4
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.06 E-value=54 Score=23.69 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH
Q 021953 106 PAIWRLVHGMAVVY 119 (305)
Q Consensus 106 Pa~WRiV~gl~vlY 119 (305)
|+.|+++|.++.-|
T Consensus 10 p~~W~~lHtia~~y 23 (105)
T d1jr8a_ 10 RASWKYFHTLLARF 23 (105)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999888654
No 5
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=6.49 E-value=2.6e+02 Score=20.29 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHc
Q 021953 104 PHPAIWRLVHGMAVVYLVALTFLLF-QKRDDARQFMKFLH 142 (305)
Q Consensus 104 PHPa~WRiV~gl~vlYll~LvFLLF-Q~~~daR~~l~~ld 142 (305)
-||.+-..+..+.++-.++++.=.. |-.++.++.+.++|
T Consensus 4 ~~p~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e 43 (132)
T d1orsc_ 4 EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVD 43 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 5899999998888888887776443 33455555555544
No 6
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.41 E-value=1.6e+02 Score=20.20 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.0
Q ss_pred HHHhccChHHHHHHHHHHc--C-CCCCCCCcccccCCCcccccCC
Q 021953 124 TFLLFQKRDDARQFMKFLH--P-DLGVELPERSYGADCRIYVHEN 165 (305)
Q Consensus 124 vFLLFQ~~~daR~~l~~ld--P-~Lg~~l~eksYa~nC~i~tp~~ 165 (305)
.|+-|.+.++|++.++.++ | .++....+-+|+..=++.+|.+
T Consensus 54 AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~ 98 (104)
T d1wexa_ 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGN 98 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCC
T ss_pred EEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCccCCCCC
Confidence 5889999999999999874 3 3544444556775555555544
No 7
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.28 E-value=81 Score=22.27 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=13.8
Q ss_pred CcchhHHHHHHHhhhH
Q 021953 268 NIIGKVCFELIILDYS 283 (305)
Q Consensus 268 s~~gK~kR~~~~~~~~ 283 (305)
|++||+++.+.+.++.
T Consensus 1 ~Y~gk~~~fL~~~~i~ 16 (72)
T d2d6fa1 1 SYQGRARKFLESASID 16 (72)
T ss_dssp CCCHHHHHHHHTTTCC
T ss_pred CcchHHHHHHHHcCCC
Confidence 6899999999998864
No 8
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=6.23 E-value=82 Score=20.52 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHhccChHHHHHHHHHHcC
Q 021953 124 TFLLFQKRDDARQFMKFLHP 143 (305)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP 143 (305)
.|+-|.+.++|++.++.+|-
T Consensus 47 afV~f~~~~~A~~ai~~lng 66 (82)
T d1b7fa1 47 AFVDFTSEMDSQRAIKVLNG 66 (82)
T ss_dssp EEEEESSHHHHHHHHHHHTT
T ss_pred ceEEECCHHHHHHHHHHhCC
Confidence 68899999999999999984
No 9
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.08 E-value=90 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.609 Sum_probs=16.3
Q ss_pred HHHhccChHHHHHHHHHHcCCCC
Q 021953 124 TFLLFQKRDDARQFMKFLHPDLG 146 (305)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP~Lg 146 (305)
.|+-|+|.++.+++++.| |++|
T Consensus 88 ~~~~F~~~~~~~~v~~~l-~~v~ 109 (110)
T d1t77a2 88 VMFNFPDPATVKKVVNFL-PRVG 109 (110)
T ss_dssp EEEECSSHHHHHHHHHHS-CSCT
T ss_pred EEEEeCCHHHHHHHHHhc-cccC
Confidence 466788888888888877 5554
No 10
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1 {Toxoplasma gondii [TaxId: 5811]}
Probab=5.61 E-value=80 Score=23.85 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=0.0
Q ss_pred hhhcCCCCcchhh
Q 021953 216 FRHMLPNFNECWW 228 (305)
Q Consensus 216 f~H~LPNF~ECWW 228 (305)
++-+||+|.|=||
T Consensus 64 ~~~iLp~~~~~wW 76 (124)
T d1kzqa2 64 FKDILPKLTENPW 76 (124)
T ss_dssp GGGTCSSCCSCCE
T ss_pred hHHhcCCCccCEE
Done!