BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021954
(305 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis]
gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]
Length = 340
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/280 (61%), Positives = 210/280 (75%), Gaps = 12/280 (4%)
Query: 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
H +P W+ P+ TT H ++ + S RL LLHSS KKLS LCH+PRL
Sbjct: 19 HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70
Query: 73 KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
KD WC A +F G++F + +ND AS+ LSFFNGG T K G +G + + +++N F
Sbjct: 71 KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
VF++RHR ++ GGKEELQH+A+VI+ NM IG+L +GIDNW
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMVIGILSRGIDNW 290
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa]
gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]
Length = 325
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 176/292 (60%), Positives = 210/292 (71%), Gaps = 25/292 (8%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFGLVGS AVF++RHR ++GGGKE+LQ++AKVI NM IGLL KGIDNW
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNW 272
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]
Length = 325
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/292 (59%), Positives = 209/292 (71%), Gaps = 25/292 (8%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFGLVGS AVF++RHR ++GG KE+LQ++AKVI NM IGLL KGIDNW
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMMIGLLTKGIDNW 272
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera]
gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/277 (59%), Positives = 203/277 (73%), Gaps = 10/277 (3%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
+R PL+ + T H ++ + S RL +H +H L SS K+L+ L H+P LK+ W
Sbjct: 10 SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69
Query: 78 ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
A +F G++F +D+F+++ S FF G TRK S EG S+ + R N GRQW
Sbjct: 70 GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
LNS+GPT+E + GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MR
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMR 246
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
HR ++G KE LQH+A+VI+ NM IG L KGIDNWGH
Sbjct: 247 HRGLVGDSKESLQHIARVIVLNMVIGCLSKGIDNWGH 283
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max]
gi|255640088|gb|ACU20335.1| unknown [Glycine max]
Length = 342
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 159/270 (58%), Positives = 186/270 (68%), Gaps = 7/270 (2%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL+LI T A L RR HH L LLHS KKL+ L HI RL D+WC+ F+
Sbjct: 22 PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79
Query: 84 NGVNFFRFTNDAFASSLSFFNGGGTRKNSG-----HEGTSHLDTARTNLFIGRQWTNILL 138
NG+N+ + + SS S G G S+ + + F GR+WT ILL
Sbjct: 80 NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139
Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
PT+E GPRR+L VYF SAIASSA SY FC PAVGASGAIFGLVGS AVF++RH++++
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLV 259
Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GGGK +LQH+A+VI NM IGLL GIDNW
Sbjct: 260 GGGKRDLQHIAQVIALNMVIGLLSTGIDNW 289
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula]
gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]
Length = 327
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/269 (57%), Positives = 196/269 (72%), Gaps = 16/269 (5%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D A ++S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GGK++LQH+A+VI N+AIGL GIDNW
Sbjct: 246 GGKKDLQHIAQVIALNLAIGLSSTGIDNW 274
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]
Length = 327
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/269 (56%), Positives = 195/269 (72%), Gaps = 16/269 (5%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D A ++S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GG ++LQH+A+VI N+AIGL GIDNW
Sbjct: 246 GGIKDLQHIAQVIALNLAIGLSPTGIDNW 274
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 336
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GP+R+L VY +SA+ASSAMSY F +P+VGASGAIFGLVGS AVF++RH+ ++ GG
Sbjct: 198 ESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGG 257
Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
E+L +A++I NMA+GL+ + IDNWGH
Sbjct: 258 NEDLMQIAQIIALNMAMGLMSRRIDNWGH 286
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 343
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 184/276 (66%), Gaps = 15/276 (5%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIAS-------SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
E + GP+R+L VY +SA+A SAMSY F +P+VGASGAIFGLVGS AVF++RH
Sbjct: 198 ESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRH 257
Query: 255 RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ GG E+L +A++I NMA+GL+ + IDNWGH
Sbjct: 258 KQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGH 293
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]
Length = 220
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/163 (75%), Positives = 143/163 (87%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N F R+WTNILLA NVL +IAQ ATQ KLLLWGAK+NSLIDKGQ WRLATS+FLHANI
Sbjct: 5 NPFNRRKWTNILLAANVLFFIAQLATQGKLLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAMSY FC PAVGASGAIFGLVG
Sbjct: 65 HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMSYWFCKMPAVGASGAIFGLVG 124
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
S AVF++RHR+I+GGGKE+LQH+A+VI+ NM IG+L +GIDNW
Sbjct: 125 SVAVFVLRHRDIVGGGKEDLQHIARVIVLNMVIGILSRGIDNW 167
>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]
Length = 369
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 171/244 (70%), Gaps = 13/244 (5%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NMA+GL+ + ID
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 315
Query: 287 NWGH 290
NWGH
Sbjct: 316 NWGH 319
>gi|25518651|pir||F86382 hypothetical protein F4F7.14 - Arabidopsis thaliana
Length = 373
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 171/244 (70%), Gaps = 13/244 (5%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NMA+GL+ + ID
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 315
Query: 287 NWGH 290
NWGH
Sbjct: 316 NWGH 319
>gi|115479511|ref|NP_001063349.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|51535953|dbj|BAD38035.1| rhomboid-like protein [Oryza sativa Japonica Group]
gi|113631582|dbj|BAF25263.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|218202268|gb|EEC84695.1| hypothetical protein OsI_31626 [Oryza sativa Indica Group]
gi|222641709|gb|EEE69841.1| hypothetical protein OsJ_29608 [Oryza sativa Japonica Group]
Length = 349
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 161/229 (70%), Gaps = 8/229 (3%)
Query: 66 LCHIPRLKDQWCENAFRFNGVNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLD 121
L +PR+ D W E + F + +A +A S FNG G+ + + G L
Sbjct: 74 LGALPRIGDIWFEGSDSFATHSILGVLENALSAPYACSSVLFNGNGSDRR--YIGRGKLP 131
Query: 122 TARTNLFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
+ R + ++ WTNILLAVN+L Y+AQ TQ +LL+WGAKINS+ID+G+ WRLATS+
Sbjct: 132 SRRPSGINSKKRLWTNILLAVNILAYVAQITTQGRLLIWGAKINSMIDRGELWRLATSSL 191
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LHAN+AHL NC+SLNSIGP +E + GPRRYL VYF+SA+A S MSYR+C SPAVGASGA
Sbjct: 192 LHANLAHLAFNCFSLNSIGPMVEMLTGPRRYLAVYFTSALAGSLMSYRYCASPAVGASGA 251
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
IFGLVG++AV+ RHR LG GKE L+H+ +V+I NM +GLL +GIDNW
Sbjct: 252 IFGLVGAYAVYTWRHRRFLGHGKESLEHIGRVVILNMGMGLLTRGIDNW 300
>gi|357158730|ref|XP_003578222.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 345
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 158/224 (70%), Gaps = 4/224 (1%)
Query: 69 IPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG--GGTRKNSGHEGTSHLDTARTN 126
+PR+ + W + F + F++S + GG R N + G +L +R
Sbjct: 73 LPRIGEIWFGGSHPIETNQVFGSLGNVFSASFVCSSALFGGNRSNGRYIGNGNLQPSRPR 132
Query: 127 LFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
++ WTN+LLAVN+L YIAQ ATQ KLL+WGAK+NSLID+G+FWRLATS+ LH N+
Sbjct: 133 GINSKKRLWTNVLLAVNILAYIAQVATQGKLLMWGAKVNSLIDRGEFWRLATSSLLHGNL 192
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL NC+SLNSIGPT+E + GPRR+L VYF+SA+A S MSY C SP+VGASGAIFGLV
Sbjct: 193 THLAFNCFSLNSIGPTVELVTGPRRFLAVYFTSALAGSLMSYCCCQSPSVGASGAIFGLV 252
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GS+AV+ RH+ +LG GKE L+H+A+V+I NM +GLL +GIDNW
Sbjct: 253 GSYAVYTWRHKKLLGRGKESLEHIARVVILNMGMGLLSRGIDNW 296
>gi|414589617|tpg|DAA40188.1| TPA: rhomboid-like protein [Zea mays]
Length = 341
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/233 (53%), Positives = 157/233 (67%), Gaps = 16/233 (6%)
Query: 66 LCHIPRLKDQWCENA-----FRFNGVNFFRFTNDAFASSLSFF-NGGGTRKNSGHEGTSH 119
L +P++ W E + F G F+ SS F NG G R S + S
Sbjct: 70 LDALPKMGSFWFEGSESLATFHILGAIGIVFSAPYVCSSALFSGNGSGGRYISNGKLLSR 129
Query: 120 ----LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
+D+ + R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLA
Sbjct: 130 RPRGIDSKK------RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLA 183
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVG 235
TS+ LHAN+ HL NC+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVG
Sbjct: 184 TSSLLHANLTHLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVG 243
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
ASGAIFGLVG++AV++ RHR G +E L+H+ +V++ NM +GLL +GIDNW
Sbjct: 244 ASGAIFGLVGAYAVYMWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRGIDNW 296
>gi|226503627|ref|NP_001148641.1| rhomboid-like protein [Zea mays]
gi|195621054|gb|ACG32357.1| rhomboid-like protein [Zea mays]
Length = 346
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 130/158 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 144 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 203
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYR SPAVGASGAIFGLVG++AV+
Sbjct: 204 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAYAVY 263
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ RHR G +E L+H+ +V++ NM +GLL +GIDNW
Sbjct: 264 MWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRGIDNW 301
>gi|242044898|ref|XP_002460320.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
gi|241923697|gb|EER96841.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
Length = 341
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/267 (47%), Positives = 163/267 (61%), Gaps = 14/267 (5%)
Query: 26 NLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNG 85
N++ A L SL RR A L V+ L L P++ D W E + F
Sbjct: 40 NVVAAFAGAQLGRSLRRRF-------AGLLRSPEVRHLDAL---PKMGDFWFEGSEPFAT 89
Query: 86 VNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
+ + S + F+G G+ G R R WTN+LLA+N
Sbjct: 90 FPILGAIGNVLSAPYVCSSALFSGNGSGGRYISNGKLLSRRPRGIDSKKRLWTNVLLALN 149
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
VL Y+AQ A+Q KLLLWGAKINSLID+GQFWRLATS+ LHA++ HL NC+SLNSIGP +
Sbjct: 150 VLAYVAQVASQGKLLLWGAKINSLIDRGQFWRLATSSLLHADLTHLAFNCFSLNSIGPMV 209
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GPRR+L VYFSSA+A S MSYR SPAVGASGAIFGLVG+ AV++ RHR G
Sbjct: 210 EMLTGPRRFLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAHAVYMWRHRRFFGNS 269
Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNW 288
+E L+H+ +V++ NM +GLL +GIDNW
Sbjct: 270 RESLEHIGRVVVLNMGMGLLSRGIDNW 296
>gi|414589616|tpg|DAA40187.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 341
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 121/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 139 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 198
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 199 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 258
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 259 MWRHRRFFGNSRESLEHIGRVVVLNM 284
>gi|223943385|gb|ACN25776.1| unknown [Zea mays]
Length = 266
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 121/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 64 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 123
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 124 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 183
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 184 MWRHRRFFGNSRESLEHIGRVVVLNM 209
>gi|168058279|ref|XP_001781137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667455|gb|EDQ54085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/186 (55%), Positives = 134/186 (72%), Gaps = 3/186 (1%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINS 164
T ++G E + T IG R WTNI+L VN+L++ AQ A+Q +LLL GAK+NS
Sbjct: 155 TAASTGDENDTSSANTITGYGIGSRSRNWTNIILGVNLLMFGAQIASQGQLLLLGAKVNS 214
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LIDKGQ+WR T + LHANI HL+VNCYSLNS+GPT+E + G +R+L +Y SAIASS +
Sbjct: 215 LIDKGQWWRFVTPSVLHANIMHLLVNCYSLNSVGPTVESLSGGKRFLAIYAVSAIASSGL 274
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
SY C +P+VGASGAIFGLVG+ AVF+ RH+ ++ GG + L +A+VI N+ GLL G
Sbjct: 275 SYTLCTAPSVGASGAIFGLVGALAVFLARHKTLMIGGDQSLAQVARVIAINLGFGLLSSG 334
Query: 285 IDNWGH 290
IDNWGH
Sbjct: 335 IDNWGH 340
>gi|147784181|emb|CAN72839.1| hypothetical protein VITISV_008789 [Vitis vinifera]
Length = 246
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 101/147 (68%), Gaps = 27/147 (18%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEK 203
V+I Q ATQ KLLLWGAK VNC+SLNS+GPT+E
Sbjct: 80 VFIGQAATQGKLLLWGAK---------------------------VNCFSLNSVGPTVEN 112
Query: 204 ICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKE 263
+ GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MRHR ++G KE
Sbjct: 113 LSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMRHRGLVGDSKE 172
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGH 290
LQH+A+VI+ NM IG L KGIDNWGH
Sbjct: 173 SLQHIARVIVLNMVIGCLSKGIDNWGH 199
>gi|384247206|gb|EIE20693.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 238
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 119/184 (64%), Gaps = 5/184 (2%)
Query: 110 KNSGHEGTSHLDTARTNLFIG--RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID 167
K G + T+ T+ N F R+ T+ILL +N VY+AQ ++DKLLL GAK N LI
Sbjct: 14 KQYGRQATTR--TSSRNEFGAPYRRVTDILLVLNAAVYVAQLVSKDKLLLLGAKDNQLIR 71
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
G++WRL T LHAN+ HL+ N YSLNS+GP +E +CG +R++ VY +SA+ S SY
Sbjct: 72 AGEWWRLLTPVALHANLIHLLTNNYSLNSLGPAVEGLCGRQRFVSVYTASALVGSVASYA 131
Query: 228 FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGID 286
F SP+VGASGAIFGL G+ AV+ RHR ++G G L L + + N+AIGL ID
Sbjct: 132 FNPSPSVGASGAIFGLGGALAVYAARHRKLMGSRGDAILSSLGQSLALNVAIGLTTPRID 191
Query: 287 NWGH 290
WGH
Sbjct: 192 QWGH 195
>gi|302823732|ref|XP_002993515.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
gi|300138646|gb|EFJ05407.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
Length = 280
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 105/140 (75%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T+++L+LWGAK+N+LI KGQ WRL T AFLH N+ HL++NCYS++S+GP +E + G +R+
Sbjct: 74 TENRLILWGAKVNNLIAKGQIWRLLTPAFLHVNLIHLLLNCYSVHSLGPHLESLGGSKRF 133
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
L V+ +A+ +S +S+ C SPAVGASGAI GL+G+ AV+ RHR +L +E L +++
Sbjct: 134 LVVFAVAAVTTSCLSFLMCKSPAVGASGAICGLIGALAVYSFRHRKLLNKAQENLGRISR 193
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+ FNM +GL+ +DNWGH
Sbjct: 194 TVAFNMVLGLMSHEVDNWGH 213
>gi|388510370|gb|AFK43251.1| unknown [Lotus japonicus]
Length = 154
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 88/101 (87%)
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
M+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAM Y FC PA GASGAIFGLVGS
Sbjct: 1 MINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMGYWFCKMPAAGASGAIFGLVGSV 60
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
AVF++RHR+I+GGGKE+LQH+A+VI+ NM IG+L +GIDNW
Sbjct: 61 AVFVLRHRDIVGGGKEDLQHIARVIVLNMVIGILSRGIDNW 101
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 111/161 (68%), Gaps = 4/161 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WT ILL N++V++ Q AT ++LLL GAK+N LI GQ +RL T FLH NIAHLMVNCY
Sbjct: 164 WTKILLVTNIVVFLLQMATANQLLLMGAKVNELISSGQLYRLLTPIFLHGNIAHLMVNCY 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
SL S+GP +E+ G R++G+Y S S+ F +P++GASGAIFGLVG FAV++
Sbjct: 224 SLYSLGPVVERCFGSHRFIGLYLFSGFFGCIASFFFSKNPSLGASGAIFGLVGGFAVYLK 283
Query: 253 RHRNILG-GGKEELQHLAKVIIFNMAIGLLIKG--IDNWGH 290
RH+ +LG + L +A+ +IFN+ + L +G IDNWGH
Sbjct: 284 RHQYLLGETSRLGLFSIAQSLIFNILMSLQ-RGSRIDNWGH 323
>gi|145347053|ref|XP_001417993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578221|gb|ABO96286.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R TN ++ + Q + + GAK+N I GQ WRLAT FLH + HLMVN
Sbjct: 49 RACTNAIMIGTASAFALQILSGQAITALGAKVNERIAAGQLWRLATPIFLHGGLPHLMVN 108
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP ME G ++L VYF + +A + SYRFC S +VGASGA+FGL G+ AV+
Sbjct: 109 MYSLNSIGPLMEATFGREQFLAVYFGAGVAGNYASYRFCASNSVGASGAVFGLAGALAVY 168
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ RH+ LG + +LQ L + NM GL + IDNWGH
Sbjct: 169 LQRHKRYLGERADMQLQQLGTALAVNMGFGLTSRRIDNWGH 209
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
GR+ T++LL N L++ Q T+ L +WG K+N+L+ GQ+WRL T AFLH N+ HL V
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAV 94
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
NCYSLN++GP +E GP R+L +Y S+A+A + S F +P ++GASGA+FG+ G+
Sbjct: 95 NCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVAS--FLGAPKSVSLGASGAVFGIGGA 152
Query: 247 FAVFIMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGH 290
A++ R+R+I G + L+ L + ++ N+ GL IDNWGH
Sbjct: 153 LAMYFYRNRDIYGKTSDRVLRQLWQTLVLNVVYGLSSTRIDNWGH 197
>gi|308804015|ref|XP_003079320.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
gi|116057775|emb|CAL53978.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
Length = 651
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ ++ + Q T+ L +G KIN I G+ WRL T FLH + HLMVN
Sbjct: 55 RACTDGIIVATCGAFALQLLTRQTLTGFGVKINEKIAAGELWRLVTPMFLHGGLPHLMVN 114
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP +E G ++ Y ++ +A + SYRFC +P++GASGA+FGL G+ AV+
Sbjct: 115 MYSLNSIGPLVEATFGREQFCATYLAAGLAGNYASYRFCPTPSLGASGAVFGLAGALAVY 174
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNMAIGLLIKGIDNW 288
+ RH+++LG + +L+ + + NMA GL IDNW
Sbjct: 175 LQRHKHLLGERADMQLKQIGSALAVNMAFGLTSARIDNW 213
>gi|302841472|ref|XP_002952281.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
gi|300262546|gb|EFJ46752.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
Length = 399
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N L+Y + ++D LLLWG K+N+LI GQ WRL T FLH+N HL++N
Sbjct: 99 RRATDVFLVLNALIYALNWLSKDVLLLWGCKVNALIAAGQLWRLVTPLFLHSNAFHLLIN 158
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G +R VY +S + +S S+ + P+VGASGA+FGL + VF
Sbjct: 159 MHALHTLGPQVEVVSGSKRTSVVYLASGVLASLASFMWSPLPSVGASGAVFGLGAALGVF 218
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDN 287
RHR++LG E L+ L N+A L+ K IDN
Sbjct: 219 YWRHRDVLGPASESGLRSLGLAAAINIAYSLVSKRIDN 256
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL 165
GG +S G D T+ R T+ LL + Y+ Q T GAK+N+
Sbjct: 151 GGGAGSSSPRGGRRYDGGLTSGDPRRAATDALLWTTAIGYVLQVLTGHAFTAMGAKVNAE 210
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ +RL T LH + HL+VNC SL+++GP +E+ G ++G+Y +S I + +S
Sbjct: 211 IAAGQVYRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASGIGGNYLS 270
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKG 284
Y+ C + AVGASGAIFGLVG+ V++ RH ++ G G +LQ L + N G++ +
Sbjct: 271 YKMCPNNAVGASGAIFGLVGAMGVYLHRHSDLFGAVGDRQLQSLLGSVGVNALFGMMSRR 330
Query: 285 IDNWGH 290
IDNW H
Sbjct: 331 IDNWAH 336
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ LL + Y Q T+ K AK+N + GQ++RL TSAFLH + HL VN
Sbjct: 73 RKATDALLLSLLAGYSLQLLTRQKATAAFAKVNENVSNGQYYRLLTSAFLHGGLVHLFVN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YS+N+IG +E+I G + SA++ + SY+ PAVGASGAIFGL G+FAV+
Sbjct: 133 MYSVNAIGSAVERIFGKTHTYAAFTLSALSGNIASYKMSKYPAVGASGAIFGLAGAFAVY 192
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ RH+++LG G EE L L ++ N G +DNW H
Sbjct: 193 LYRHKDVLGSGAEEQLNALGTSLMINAVYGATSARVDNWAH 233
>gi|255077864|ref|XP_002502512.1| rhomboid-like protein [Micromonas sp. RCC299]
gi|226517777|gb|ACO63770.1| rhomboid-like protein [Micromonas sp. RCC299]
Length = 336
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ LL Y+ Q + GAK+N+ I +G+ WRL T LH + HLMVN
Sbjct: 115 RALTDALLWATAGGYVLQLLSGHAFTAVGAKVNAKIAQGEVWRLLTPLLLHGSALHLMVN 174
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C SLN++GP +E+ G +++ VY S + + +SY+ C + AVGAS AIFGLVG+ ++
Sbjct: 175 CMSLNNLGPVVERQFGREQFMAVYLGSGLLGNFLSYKRCPNNAVGASSAIFGLVGALGIY 234
Query: 251 IMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ RHR++ G G + Q+L + N GL+ K IDNWGH
Sbjct: 235 LNRHRDLFGDYGDKVFQNLLGSVGLNAMFGLMSKRIDNWGH 275
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
Query: 134 TNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ VNVL YI F + L+ GAK+N LI +G+++RL T FLH I
Sbjct: 141 TYILITVNVLAYIVTAYLSGNFVDSNINVLVFLGAKVNYLIARGEYYRLITCMFLHGGIM 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL++N ++L S+GP +EKI G RYL +YF S I SS SY F + ++GASGAIFGL+G
Sbjct: 201 HLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVSSIFSYMFSTAVSIGASGAIFGLLG 260
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH--DMPGRRVPLQLLG 303
+ +F M+ ++ +G G + ++ VI N+ +G + +DN+GH + G LLG
Sbjct: 261 AALIFAMKMKDRIGRGF--ITNIVSVIFINLFMGFSMSNVDNFGHLGGLIGGSAITLLLG 318
Query: 304 I 304
I
Sbjct: 319 I 319
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 128 FIGRQWTNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAF 179
F + T+ L+ +N+ +++ + F K+LL +GAK N+LIDKGQ WRL T AF
Sbjct: 138 FENKLLTSGLIVINIAIFLITAFLSGSLFDIDTKVLLDYGAKYNALIDKGQVWRLLTCAF 197
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH+ + H+ N YSL IGP +E+I G +YL +Y S+I +SA+SY +S +VGASG
Sbjct: 198 LHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITASALSYFMSPDSISVGASG 257
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFGL+G+ F RN + K+ + L +VII N+ IGL I IDN+ H
Sbjct: 258 AIFGLMGALLAFAFIERNKI--QKKYMSSLMQVIIINLFIGLSISNIDNFAH 307
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 11/172 (6%)
Query: 128 FIGRQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ F ++ + LL GAK N LI +G+ WRL T AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNLGAKYNPLIYQGEVWRLVTCAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFGL+G+ VF ++ R+ + KE + +L VII N+ IG I IDN GH
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLIGVIILNLLIGFNISNIDNLGH 302
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 11/172 (6%)
Query: 128 FIGRQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ F ++ + LL +GAK N LI +G+ WRL AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNFGAKYNPLIYQGEVWRLVACAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFGL+G+ VF ++ R+ + KE + +L VII N+ IG I IDN GH
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLLGVIILNLLIGFNISNIDNLGH 302
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMV 189
R T+ L VNV+V++ Q TQ LL GAKI S+I + Q++RL T FLH +++H++V
Sbjct: 142 RAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILV 201
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSF 247
NC+SLN+IGP +E+ G R + Y + IA + S+ F P+VGASGAIFGLVG+
Sbjct: 202 NCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGAL 261
Query: 248 AVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLI-KGIDNW 288
VF+ RH++I G + L + + I N+ IGL IDNW
Sbjct: 262 GVFLARHQDIFGDRSRYMLNGIIQTCILNLIIGLAPGSNIDNW 304
>gi|159482562|ref|XP_001699338.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158272974|gb|EDO98768.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 406
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N LV++ + ++D +L+WGAK+N+LI GQ+WRL T FLH+N+ HL +N
Sbjct: 90 RRTTDVFLCLNALVFVLNWLSRDVVLIWGAKVNALIAAGQWWRLVTPLFLHSNLFHLAIN 149
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G RR +Y +SA S+ P G + A+FGL + VF
Sbjct: 150 MHALHTLGPQVEVVSGSRRTAAIYMASASCSA-------RCPVWGPAAAMFGLGAALGVF 202
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGH 290
RH ++LG + L+ L + N+A L+ K IDNWGH
Sbjct: 203 YWRHADLLGPASDSGLRSLGLTAVINIAYSLVNKRIDNWGH 243
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 110/169 (65%), Gaps = 11/169 (6%)
Query: 131 RQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
++ T IL+A+NV++++ F ++ + L+ +GAK N LI +G+ WRL T AFLH
Sbjct: 136 KKSTLILIAMNVIIFLLTAFISRRILTIDINVLINFGAKYNPLIYQGEIWRLITCAFLHG 195
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
IAHL+ N YSL +GP +E+I G ++YL +YF+SAI SS +S NS +VGASGAIF
Sbjct: 196 GIAHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITSSLLSVLLNENSVSVGASGAIF 255
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ +F ++ R+ + G + +L +II + G I+GIDN GH
Sbjct: 256 GLLGAILIFSIKERHRIKKG--YILNLVGIIILILMSGFTIRGIDNLGH 302
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 16/203 (7%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILLAVNVLVY----IAQFAT 151
FF+ G ++ + ++ + R F W T I++A+NVL+Y + T
Sbjct: 147 FFSKGLEKRETDYKDIEDIIENRKKDFEIQFKAKTPWLTYIIIAMNVLMYGLLRLVAMKT 206
Query: 152 ----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
+ +L +GAK+N+LI +GQ+WR T FLHA+I HL VNCYS+ IG +EKI G
Sbjct: 207 GTSYEQQLEPFGAKVNNLIMEGQYWRFFTPMFLHADIVHLAVNCYSIYIIGAQVEKIFGR 266
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
R+L +YF + + SA S+ F + +VGASGAIFGLVG+ F +R +L +
Sbjct: 267 GRFLAIYFVAGLIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYG--VN 324
Query: 268 LAKVIIFNMAIGLLIKGIDNWGH 290
L +I+ N+A G++ K IDN H
Sbjct: 325 LITMIVINLAYGVMNKRIDNHAH 347
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 41/280 (14%)
Query: 25 LNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFN 84
++ + +H + ++ +R L L+ S K++ + +P AF
Sbjct: 95 MDKVEIIKQHQMDITSEKRFLKCISLNI------SAKQVEKYFSVP---------AFDAG 139
Query: 85 GVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILL 138
V F+ FF+ G R+ + ++ + R F + W T I++
Sbjct: 140 LVKSFK----------RFFSKGLDRRETDYQDIEGIIEKRKKDFEIQFKVQTPWLTYIII 189
Query: 139 AVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
A+N+++Y + Q A + +L +GAK+N+LI +GQ+WR FLHA+I HL VN
Sbjct: 190 ALNIVMYGLLQLVSMKTGTAYEQQLEPFGAKVNNLIMEGQYWRFFAPMFLHADIVHLAVN 249
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
CYS+ IG +EKI G R+L +YF S SA S+ F + +VGASGAIFGLVG+ F
Sbjct: 250 CYSIYIIGSQVEKIFGRGRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFGLVGAMLYF 309
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+R +L +L +++ N+A G + K IDN H
Sbjct: 310 SLRRPALLKSSYG--VNLITMLVINLAYGFMNKRIDNHAH 347
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 16/194 (8%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQ-------FATQDKLLLW 158
G + N G S + N+ T IL+ +N++V++ F ++L++
Sbjct: 121 GNLQINERKNGQSKKEHKNYNIL-----TFILIGINIVVFLLTAFISGNIFDIDTRVLIY 175
Query: 159 -GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAKIN LID G+ WRL T AFLH+ + H++ N YSL IGP +E+I G R+YL +Y S
Sbjct: 176 FGAKINILIDHGEIWRLLTCAFLHSGLIHIVCNMYSLYIIGPQIEQIYGIRKYLIIYLIS 235
Query: 218 AIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
I +S SY N A+GASG IFGL+G+ F + RN + K+ L L ++I N+
Sbjct: 236 CITASISSYFLNPNGIAIGASGGIFGLMGALLAFALIERNRI--QKKFLSSLLQIIAINL 293
Query: 277 AIGLLIKGIDNWGH 290
IGL IK IDN+ H
Sbjct: 294 FIGLSIKNIDNFAH 307
>gi|212275626|ref|NP_001130636.1| uncharacterized protein LOC100191736 [Zea mays]
gi|194689702|gb|ACF78935.1| unknown [Zea mays]
gi|414589614|tpg|DAA40185.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 148
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%)
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ NC+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG+
Sbjct: 2 MQFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGA 61
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+AV++ RHR G +E L+H+ +V++ NM
Sbjct: 62 YAVYMWRHRRFFGNSRESLEHIGRVVVLNM 91
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|357128745|ref|XP_003566030.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 267
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 12/140 (8%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHL-----------MVNCYSLNSIGPTMEKICGPRRYL 211
N+LI KGQ WRLATS LH + HL +VN SL +GP +E+ GPRR+L
Sbjct: 81 NALIKKGQIWRLATSCLLHGGLIHLAVRVSASVDIAVVNNVSLREVGPEVEEATGPRRFL 140
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y +SA+ S MSY F P++GASGAI GL+G+ AV++ R++ L +E L+H+
Sbjct: 141 AIYCTSAVTGSLMSYWFSARPSIGASGAICGLIGAQAVYVWRNQEYLEKSEETLKHIRYD 200
Query: 272 IIFNMAIGLLI-KGIDNWGH 290
++ N IGL++ + I+NWGH
Sbjct: 201 VLLNAGIGLILWRFINNWGH 220
>gi|168186765|ref|ZP_02621400.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
gi|169295367|gb|EDS77500.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
Length = 202
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ T IL+ +NVLVYI + LL GA N+L+ GQ++RL T FLH
Sbjct: 22 RVTFILITINVLVYIITAILSENILDSDIRVLLFLGANENTLVSSGQYYRLITCMFLHGG 81
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL +N Y+L +IGP +E+I G +Y+ +Y + SS SY F ++GASGAIF L
Sbjct: 82 LVHLALNMYALEAIGPIVERIYGKMKYIIIYLVGGLISSLSSYVFSTGVSIGASGAIFAL 141
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+G+ V ++ R+++ GK ++++ VI N+ IGL I IDN+ H
Sbjct: 142 LGAMFVLTIKMRDVV--GKAVIKNIVSVIGINIFIGLAIPNIDNFAH 186
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 11/177 (6%)
Query: 123 ARTNLFIGRQWTNILLAVNVLVYIA----QFATQDK----LLLWGAKINSLIDKGQFWRL 174
+ N F + T IL+ +NV++++ F D L+ +GAK+N LI++GQ WRL
Sbjct: 136 VKKNFFQYQVLTYILIGINVIIFLLTAFLSFDIYDINTGILIDFGAKVNILINQGQIWRL 195
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA 233
T AFLH+ + H+ N YSL IGP +++I G +YL +Y S + +S +SY NS +
Sbjct: 196 FTCAFLHSGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTASLLSYYMSPNSIS 255
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
VGASGAIFGL+G+ F + RN + K L + +VI N+ IGL IK IDN+ H
Sbjct: 256 VGASGAIFGLMGALLAFAIIERNRI--QKRFLFSIMQVISINLFIGLSIKNIDNFAH 310
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI G +WRL ++ FLH ++ H++ N Y+L ++GP E+I G RR+L +Y
Sbjct: 45 LVFLGAKVNELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALY 104
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVII 273
F + + S SY S +VGASGAIFGL+G +F +R +LG GK ++Q++A V +
Sbjct: 105 FLAGLGGSLASYLLSPSVSVGASGAIFGLIGGLGIFYYLNRAVLGNFGKAQVQNMATVAL 164
Query: 274 FNMAIGLLIKG-IDNWGH 290
N+ IG IDNWGH
Sbjct: 165 INLFIGFSAPSIIDNWGH 182
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 41/288 (14%)
Query: 17 FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQW 76
F + + P ++ + +H + ++ +R + ++ S K+ + +P
Sbjct: 87 FLFDSTPDMDKVEIIKQHQMDITSEKRFMKCISVNI------SAKQAEKYFSVP------ 134
Query: 77 CENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---- 132
AF V F+ FF+ G ++ + ++ + R F +
Sbjct: 135 ---AFDAGLVKSFK----------RFFSKGLDKRETSYKDIEDVIEKRKKDFEIQSKAET 181
Query: 133 -W-TNILLAVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
W T I++A N++++ + Q A Q +L +GAK+N+LI +GQ+WR + FLH
Sbjct: 182 PWLTYIIIAFNIVMWGLLQLVSMRTGTAYQQQLEPFGAKVNNLIMEGQYWRFISPMFLHG 241
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFG 242
+I HL VNCYSL IG +EKI G R+L +YF S SA S+ F + +VGASGAIFG
Sbjct: 242 DIVHLAVNCYSLYIIGSQVEKIFGRGRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFG 301
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
LVG+ F +R +L +L ++I N+A G + K IDN H
Sbjct: 302 LVGAMLYFSLRRPALLKSSYG--VNLITMLIINLAYGFMNKRIDNHAH 347
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAKIN I G+ WRL T+ FLHAN+ H+ N Y+L+ +GP E+ G R+L +Y S
Sbjct: 80 GAKINERIADGELWRLLTAVFLHANLIHIFFNGYALSVLGPETERFYGHGRFLALYLISG 139
Query: 219 IASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMA 277
+ S SY +PAVGASGAIFGL+G VF +R +LG G+ +++ + + + N+
Sbjct: 140 LGGSIASYALSPAPAVGASGAIFGLIGGLGVFYYLNRRVLGEFGQNQVRGIVAIALINLL 199
Query: 278 IGLLIKG-IDNWGH 290
IG +G IDNWGH
Sbjct: 200 IGFAAQGVIDNWGH 213
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T L++ GAK+N I G+ WRL T+ LHAN+ H+ N Y+L+ +GP E+ G R+
Sbjct: 72 TLSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFNGYALSVLGPETERFYGHVRF 131
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLA 269
L +Y S + S SY ++PAVGASGAIFGL+G +F +R +LG G+++++ +
Sbjct: 132 LVLYLLSGVGGSIASYALSSAPAVGASGAIFGLIGGLGMFYYLNRQVLGQFGQDQVRGIV 191
Query: 270 KVIIFNMAIGLLIKG-IDNWGH 290
+ + N+ IG +G IDNWGH
Sbjct: 192 AIAVINLLIGFAAQGVIDNWGH 213
>gi|187776993|ref|ZP_02993466.1| hypothetical protein CLOSPO_00538 [Clostridium sporogenes ATCC
15579]
gi|187773921|gb|EDU37723.1| peptidase, S54 family [Clostridium sporogenes ATCC 15579]
Length = 344
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A FI+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATFIIAYKNRKRGGKEFLNNIISVIVI 303
Query: 275 NMAIGLLIKGIDNWGH 290
N+ +G I +DN+GH
Sbjct: 304 NLILGFSIPNVDNFGH 319
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI+ G+ +RL TSAFLH I H+ N +LN IG +E + G +RY+ +Y
Sbjct: 168 LIQMGAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIY 227
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S +SY F NS +VGASGAIFGL+G+ +F ++ R+ + GK+ ++++ + I
Sbjct: 228 VISALGGSVVSYLFKPNSISVGASGAIFGLLGAMLIFGLKERDKI--GKQYMKNILETIG 285
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ IG+ I IDN+ H
Sbjct: 286 LNVIIGITIPNIDNFAH 302
>gi|148657883|ref|YP_001278088.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569993|gb|ABQ92138.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 283
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 15/170 (8%)
Query: 136 ILLAVNVLVYIAQF-------------ATQDKLLLWGAKINSLID-KGQFWRLATSAFLH 181
ILL +N+LV++ + + + L+WGAK N+ I GQ++R T+ FLH
Sbjct: 50 ILLTINILVFVGPWLLDVIGIRIAGVVSVYELTLIWGAKENAAISIGGQYYRFLTAMFLH 109
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
+IAHL N ++L S+G E+I G +R+L +Y + + MSY F +P+VGASGAIF
Sbjct: 110 GSIAHLFFNSFALYSLGFEAERIFGSQRFLALYLIAGLGGGVMSYAFNPNPSVGASGAIF 169
Query: 242 GLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ F + R++LGG +++L L V++ N+A+G IDN H
Sbjct: 170 GLIGALIAFYVVARSVLGGIARQQLGSLIFVVMINLALGFTSPYIDNNAH 219
>gi|424826465|ref|ZP_18251350.1| S54 family peptidase [Clostridium sporogenes PA 3679]
gi|365980910|gb|EHN16927.1| S54 family peptidase [Clostridium sporogenes PA 3679]
Length = 343
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A I+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATLIIAYKNRKKGGKEFLNNIISVIVI 303
Query: 275 NMAIGLLIKGIDNWGH 290
N+ +G I +DN+GH
Sbjct: 304 NLILGFSIPNVDNFGH 319
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 3/137 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++ GAK+N LI+ GQ WRL T FLH +AH+ N Y+L IG +E G +Y+ +Y
Sbjct: 169 LVIMGAKVNELINHGQVWRLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIY 228
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S SY F NS +VGASGAIFGL G+ VF +++R+ + GK + +L KV+I
Sbjct: 229 LFSALGGSIFSYIFSPNSISVGASGAIFGLFGAMLVFGVKNRHRI--GKNYVINLFKVVI 286
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ IG+ I IDN GH
Sbjct: 287 INIFIGVTISNIDNAGH 303
>gi|383761642|ref|YP_005440624.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381910|dbj|BAL98726.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 260
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GAK+N + G+ WRL T FLH+ + HL+ N Y+L +GP +E G R+L V+
Sbjct: 53 LVLMGAKVNERLAAGELWRLVTPIFLHSGVMHLLFNLYALYILGPMLEGYIGHVRFLAVF 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG-GGKEELQHLAKVII 273
S + + SY +VGASGAIFGL+G+ A+F +R+R+ G G+ LQ++ ++
Sbjct: 113 LISGLYGTLFSYALSGPVSVGASGAIFGLLGAIALFFLRYRDNFGPQGRAILQNMLIILA 172
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ IG IDNWGH
Sbjct: 173 LNLVIGFSSSYIDNWGH 189
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 111/192 (57%), Gaps = 19/192 (9%)
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAK 161
G NSG S T R L T L+ +N+ ++ +A +T L+++GAK
Sbjct: 124 GVPTNSGFSTASEAVTFRPYL------TYSLIFINLFIFAMMTLAGGSTNTGVLIMFGAK 177
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G++WRL TS FLH + HL N Y+L ++GP +E++ G RYL +Y SS +
Sbjct: 178 VNSLILQGEYWRLFTSMFLHIGVIHLAFNLYALWALGPILEELFGRIRYLLIYISSGVMG 237
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL---GGGKEELQHLAKVIIFNMAI 278
SA S+ F ++ + GASGAIFG++G+ V+ R + L G GK +L +++ N++I
Sbjct: 238 SAASFLFTDAISAGASGAIFGILGALVVY-SRSKPFLWKSGFGK----NLVIIVLINLSI 292
Query: 279 GLLIKGIDNWGH 290
G GID + H
Sbjct: 293 GFFQPGIDVYAH 304
>gi|153955340|ref|YP_001396105.1| hypothetical protein CKL_2722 [Clostridium kluyveri DSM 555]
gi|219855759|ref|YP_002472881.1| hypothetical protein CKR_2416 [Clostridium kluyveri NBRC 12016]
gi|146348198|gb|EDK34734.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569483|dbj|BAH07467.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 338
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 10/163 (6%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A+NVLVYI + + L+ GAK+N LI KGQ++RL T FLHA I
Sbjct: 154 TYVIIALNVLVYIVTSYLSGSIMDSNVNVLVFMGAKVNFLIAKGQYYRLFTCMFLHAGIV 213
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL VN YSL +G +EK+ G +Y+ +Y S + SS SY F +S +VGASGAIFGL+G
Sbjct: 214 HLGVNMYSLYMMGTFIEKVYGKLKYIIIYIISGLFSSIFSYMFSSSISVGASGAIFGLLG 273
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ VF ++ ++ +E + ++ +I+ N+ IG I +DN+
Sbjct: 274 ASLVFALKMKH--SVAREFIMNIVAIIVMNLIIGFSIANVDNF 314
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 222 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVANSYSLK 280
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
S+G +E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+
Sbjct: 281 SMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNS 340
Query: 256 NILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
I G G+ + L + I N+ +G+ IDNWGH
Sbjct: 341 EIFGHSGRAQKGALLETIGINLVLGMTNPVIDNWGH 376
>gi|156741085|ref|YP_001431214.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156232413|gb|ABU57196.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 281
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWT-NILLAVNVLVYIA-------------QFATQDKLLL 157
+G E + R LF W +LL +N++V++ + D LL+
Sbjct: 30 AGPEPSPAAVQVRFPLF--TPWVARVLLTINIIVFVVPSFLDVIGVRIAGTVSVYDFLLI 87
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGAK N+ I GQ++R T+ FLH +AHL N ++L S+G E++ G +R+L +Y
Sbjct: 88 WGAKDNAAIFVGGQYYRFLTAMFLHGGLAHLFFNSFALYSLGFETERLFGAQRFLAIYML 147
Query: 217 SAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFN 275
+ + SY +P+VGASGAIFGL+G+ F + R +LGG +++L L + + N
Sbjct: 148 AGLGGGVASYALNPNPSVGASGAIFGLIGALIAFYLVARRVLGGIARQQLGSLIFITLIN 207
Query: 276 MAIGLLIKGIDNWGH 290
+A+G IDN H
Sbjct: 208 LALGFTTPYIDNNAH 222
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 211 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSNSYSLK 269
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
S+G +E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+
Sbjct: 270 SMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNS 329
Query: 256 NILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
I G G+ + L + I N+ +G+ IDNWGH
Sbjct: 330 EIFGHSGRAQKGALLETIGINLVLGMTNPVIDNWGH 365
>gi|223994881|ref|XP_002287124.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976240|gb|EED94567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 866
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKG-QFWRLATSAFLHANIA 185
G+ N L L+ IA F Q L WGAK + L+ +G Q RL T FLH I
Sbjct: 527 GQIGKNTLTGNIFLLNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIG 586
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM N YSL S+G +E+ G R++ Y S I + +S +PAVGASGAIFGLVG
Sbjct: 587 HLMANSYSLKSMGMNIERSFGRSRFVATYLLSGIMGNVVSAIQSPNPAVGASGAIFGLVG 646
Query: 246 SFAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ F+ R++++ G G+ + L + I FN+ +G+ IDNWGH
Sbjct: 647 AYYTFLSRNQDLFGYSGQRQKSALIETIGFNLLLGMTNPMIDNWGH 692
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 99 TYTLIAINLIVFALMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 158
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E++ G RY+ VY S I S S+ F ++ + GASGAIFG++G+
Sbjct: 159 FNLYALWALGPIAEELLGRIRYITVYILSGILGSVASFLFTDAISAGASGAIFGILGALV 218
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V+ R + G + LA VI+ N+++G GID + H
Sbjct: 219 VYSRRKPFLWKSGFG--KSLAVVILINLSLGFFQTGIDVYAH 258
>gi|170756233|ref|YP_001780053.1| membrane associated peptidase [Clostridium botulinum B1 str. Okra]
gi|429244301|ref|ZP_19207768.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
gi|169121445|gb|ACA45281.1| putative membrane associated peptidase [Clostridium botulinum B1
str. Okra]
gi|428758682|gb|EKX81087.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
Length = 341
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 AKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|153938565|ref|YP_001389769.1| S54 family peptidase [Clostridium botulinum F str. Langeland]
gi|384460841|ref|YP_005673436.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
gi|152934461|gb|ABS39959.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
Langeland]
gi|295317858|gb|ADF98235.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
Length = 340
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|357128747|ref|XP_003566031.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 214
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N+LI KGQ WRLATS+ LH + HL VN YSL+ +GP +E+ GPRR+L +Y +SA+A S
Sbjct: 45 NALIKKGQIWRLATSSLLHGGLFHLAVNAYSLHVVGPEVEEATGPRRFLAIYCTSALAGS 104
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL-L 281
MSY F G + VG+ AV++ R++ L +E L+ + ++ N+ IGL L
Sbjct: 105 LMSYWF------GMFNLLLDRVGAQAVYVWRNQKYLENAEETLKDIRYDVLINLGIGLFL 158
Query: 282 IKGIDNWGH 290
+ IDNW H
Sbjct: 159 FRRIDNWAH 167
>gi|325289903|ref|YP_004266084.1| rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965304|gb|ADY56083.1| Rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Length = 189
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN L +N+LV++ Q L+++GAK+N LID GQ+WRL TS F+H I HL+
Sbjct: 12 TNTFLIMNILVFLVMTLAGGTTNQVVLVIFGAKVNQLIDLGQYWRLLTSIFIHIGIVHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N Y+L ++G E + G ++ +Y S I + SY F + + GASGAIFGL+G+
Sbjct: 72 LNSYALIAVGQISEAVFGHLKFALLYLLSGIGGATASYLFSEAISAGASGAIFGLLGALV 131
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ + G + +L VI FN+ GL+ GIDN+ H
Sbjct: 132 SYGWKNAGMWRSGL--IANLLFVIGFNILFGLITTGIDNYAH 171
>gi|168177744|ref|ZP_02612408.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|387816637|ref|YP_005676981.1| membrane protein [Clostridium botulinum H04402 065]
gi|182671461|gb|EDT83435.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|322804678|emb|CBZ02230.1| conserved membrane protein [Clostridium botulinum H04402 065]
Length = 340
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ILL V V VY+ Q ++ D LL GAK N+LI +G+FWRL T FLH ++ H+
Sbjct: 39 TYILLGVTVGVYLLQMLSRPLFGYDLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPHIA 98
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L + G ++E+ G RR+L +YF + +SY + GAS A+FG+V + A
Sbjct: 99 FNMYALYAFGVSLERHYGRRRFLLLYFIGGLGGVVLSYLLSPENSAGASTALFGVVAAEA 158
Query: 249 VFIMRHRNILGGGKEELQHL---AKVIIFNMAIGLLIKGIDNWGH 290
VF+ +R GKE + L +I N+ +G L GIDNWGH
Sbjct: 159 VFLYYNRRWF--GKEAVSALWNTVFIIGINLVLG-LSPGIDNWGH 200
>gi|28210270|ref|NP_781214.1| rhomboid family membrane protein [Clostridium tetani E88]
gi|28202706|gb|AAO35151.1| conserved membrane protein (rhomboid family) [Clostridium tetani
E88]
Length = 345
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 105/165 (63%), Gaps = 10/165 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+++N+++Y + D L+ GAK+N LID GQ++RL T FLH +
Sbjct: 167 TFILISMNIIMYFITALLSGNIIDSNIDVLIFLGAKVNPLIDIGQYYRLLTCIFLHGGLI 226
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +N Y+L++IGP +EKI G +YL +YF S I SS +SY +S ++GASGAIFGL+G
Sbjct: 227 HLALNMYALSAIGPLVEKIYGKFKYLAIYFLSGICSSLLSYFMSSSISIGASGAIFGLLG 286
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +++++ + GK + ++ VI N+ IG I +DN+GH
Sbjct: 287 ACLIISLKYKDRV--GKAFVNNIISVIFVNLIIGFSISNVDNFGH 329
>gi|148378401|ref|YP_001252942.1| membrane associated peptidase [Clostridium botulinum A str. ATCC
3502]
gi|148287885|emb|CAL81951.1| putative membrane associated peptidase [Clostridium botulinum A
str. ATCC 3502]
Length = 337
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S + SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGVLSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|226947631|ref|YP_002802722.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
gi|226842288|gb|ACO84954.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
Length = 340
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYANRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 115 EGTSHLDTARTNLFIGRQW-----TNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
EG ++ ++ + W T I++ +N++ ++ LL +G K
Sbjct: 120 EGVLQVNKNKSTYYEKEYWKYKNLTFIIMGINIVTFLLTALLSGNIFNIDYWVLLKYGGK 179
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N LI++GQ+WRL T AFLH + H++ N YSL +GP +++I G +Y +Y S + S
Sbjct: 180 VNELINQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTS 239
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
S +SY +VGASG IFGL+G+ VF + R + K L L + + N+ IG
Sbjct: 240 SLLSYFMSPYLSVGASGGIFGLMGALVVFAIIERKRI--NKRYLSSLLQAMGVNLFIGFS 297
Query: 282 IKGIDNWGH 290
I IDN+ H
Sbjct: 298 ISNIDNFAH 306
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L +N++V+I Q L+ +GAK+N LI G+ WR TS F+H HL+
Sbjct: 135 TYVLFGINIVVFILMTLAGGSENQSVLIAFGAKVNPLIQAGELWRFLTSVFIHIGFLHLL 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L S+GP E+ G R+L +Y S + S SY F + + GASGAIFGL+G+
Sbjct: 195 FNLYALWSLGPISERNFGHWRFLVIYIMSGLGGSIASYFFSTALSAGASGAIFGLLGALL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ ++ G +L VII N GL GIDN+ H
Sbjct: 255 YYSLKRPSLWKSGLG--MNLVIVIIINFGFGLTQPGIDNYAH 294
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK N+LI GQ++RL T FLH + HL++N Y+L ++GP +EK G +Y+ +Y
Sbjct: 181 LIFLGAKENTLIASGQYYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIY 240
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS SY F N ++GASGAIF L+G+ V ++ R++ GK+ ++++ VI+
Sbjct: 241 LVGGLISSISSYIFSNGVSIGASGAIFSLLGAILVLTIKMRSV--AGKDVIKNVVSVIVI 298
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IGL I IDN+ H
Sbjct: 299 NIFIGLAIPNIDNFAH 314
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 151 TYTLIAINLIVFGLMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 210
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++G E++ G RY+ VY S I S S+ F ++ + GASGAIFG++G+
Sbjct: 211 FNLYALWALGAIAEELLGRVRYITVYILSGILGSVASFFFTDAISAGASGAIFGILGALV 270
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V+ R + G + LA V++ N+ +G GID + H
Sbjct: 271 VYSRRKPFLWKSGFG--KSLAVVVLINLGLGFFQTGIDVYAH 310
>gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 4/160 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
RHR++ + L+ +A+ ++ N +G+ IDN+GH
Sbjct: 138 CYRHRHVW-NLEGPLRSVAQAVVINGVLGMSSARIDNFGH 176
>gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 4/160 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
RHR++ + L+ +A+ ++ N +G+ IDN+GH
Sbjct: 138 CYRHRHVW-NLEGPLRSVAQAVVINGVLGMSSARIDNFGH 176
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 8/167 (4%)
Query: 130 GRQWTNI-LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
G+ + I L +NV ++ + L+ +GAK N LI +G++WRL T FLH
Sbjct: 202 GKPYLTISFLVINVFIFMFLEWVGSSTDPQTLITYGAKWNPLIIEGEYWRLVTPMFLHIG 261
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
I HLM N +L +G +E+I G R+L +Y + I+ + S+ F + A GASGAIFG
Sbjct: 262 IWHLMFNSLALYFLGGAVERIFGSFRFLWIYMFAGISGTLASFAFTPNLAAGASGAIFGC 321
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F ++ RN+ + + ++IFN+AIG +I IDN+GH
Sbjct: 322 FGALLYFGLKRRNLF--FRTIGMDIIFILIFNLAIGFIIPMIDNYGH 366
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IGL I IDN+ H
Sbjct: 164 NIFIGLAIPNIDNFAH 179
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQF---ATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV+V++ TQ+ L+ +GAK+N+LID GQ+WRL TS F+H HL+
Sbjct: 19 TYLLVLINVVVFLVMELAGGTQNPYVLIFFGAKMNTLIDAGQYWRLLTSMFIHIGFTHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L +G E++ G R+L +Y S +A S +SY + + GASGAIFGL+G+
Sbjct: 79 FNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGPELSAGASGAIFGLLGAII 138
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ R G + +LA V+ N+ G++ GIDN+ H
Sbjct: 139 IYGCRKPAFWRTGL--ITNLAIVLGINLVFGVVFSGIDNFAH 178
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IGL I IDN+ H
Sbjct: 164 NIFIGLAIPNIDNFAH 179
>gi|384251749|gb|EIE25226.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 278
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 104 NGGGTRKNSG---HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT--------Q 152
+GGG+ + +G G++ D ++ LL +N+ VY A A
Sbjct: 52 DGGGSYQRTGAPMKAGSNKFDIPAVKPYLAYA----LLFLNLAVYGAGIAVALTQGNDAS 107
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++ L AK+N + G+F+RL T FLHA I HL +NC++L SIGP +E + G +
Sbjct: 108 NEWFLSLAKVNEKVASGEFYRLLTCTFLHAGILHLGLNCWALYSIGPEVEGVMGYSTFAA 167
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S +A S S+ F + VGASGAIFGL+G+ A + +R+R L G ++L ++A ++
Sbjct: 168 IYVLSGLAGSTASFLFSDLITVGASGAIFGLLGATAGYFLRNRA-LQGSTQQLTYIAGIV 226
Query: 273 IFNMAIGLLIKG-IDNWGH 290
N+ +G IDN GH
Sbjct: 227 ALNIFLGASPGSMIDNSGH 245
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 4/163 (2%)
Query: 129 IGR-QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAH 186
IGR W++ ++ N+ + AQ A + WG K++ I +G+ +RL T FLH H
Sbjct: 83 IGRLSWSSRIIWTNIATFAAQ-AWKPSFTQWGIKVSEKILRGEELYRLITPVFLHGGFGH 141
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ N SL+ +GP +E++ G R+L Y S + + +S +P +GASGA+FG+VG+
Sbjct: 142 IFTNMISLSRVGPDVERLFGSGRFLTTYMVSGMTGNLLSAYMSPNPGLGASGAVFGVVGA 201
Query: 247 FAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ VF+ R+ +LG G+ + + ++FN+ +G L IDNW
Sbjct: 202 YYVFLTRNEWLLGPAGQSVTSSITQTMLFNIFLGALNPVIDNW 244
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 24/169 (14%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A+N+LVY+A + ++ +GAK+N+LI +G++WR T FLH ++ HL+
Sbjct: 188 LIAINILVYLALVLYERTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHGSLMHLL 247
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VNCYSL IG +E++ G R++ Y + I + S+ F P+VGASGAIFGL+G
Sbjct: 248 VNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSFLFVPGPSVGASGAIFGLMGILL 307
Query: 249 VFIMRHRNILGGGKEELQ-------HLAKVIIFNMAIGLLIKGIDNWGH 290
F G + LQ + I+ N+ G GIDN+ H
Sbjct: 308 YF---------GLERPLQFKVYFGSSIITTILINLVYGFSSTGIDNFAH 347
>gi|125973563|ref|YP_001037473.1| rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|256003382|ref|ZP_05428373.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281417768|ref|ZP_06248788.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|385778515|ref|YP_005687680.1| rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|419723657|ref|ZP_14250772.1| Rhomboid family protein [Clostridium thermocellum AD2]
gi|419724518|ref|ZP_14251580.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|125713788|gb|ABN52280.1| Rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|255992672|gb|EEU02763.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281409170|gb|EFB39428.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|316940195|gb|ADU74229.1| Rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|380772065|gb|EIC05923.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|380780339|gb|EIC10022.1| Rhomboid family protein [Clostridium thermocellum AD2]
Length = 511
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 11/166 (6%)
Query: 131 RQW-TNILLAVNVLVY--IAQFA------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
+ W T +L+AVN+LV+ I +A + L+ +GAK N+ I G++WR T FLH
Sbjct: 178 KPWVTYVLIAVNILVWLLIEIYARSKGVDSSSLLVDFGAKENTHIMMGEYWRFVTPMFLH 237
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
I HL+VN YSL +G T+E I G R+L +Y + + S +S+ F +P+VGASGAIF
Sbjct: 238 NGITHLVVNSYSLYVLGTTVEMIMGKGRFLFIYLMAGLMGSIVSFIFSIAPSVGASGAIF 297
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
GL+G+ + HR + G + + ++ N+ GL + IDN
Sbjct: 298 GLLGALIYYGTEHRELFKKGFG--RGILTTLLINIVYGLSVPRIDN 341
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T+ L A+ +L ++ Q ++ GAK+N+ I G+++RL T FLH N HL+VN S
Sbjct: 254 TDWLAAITILSFLLQLWAGPAYVMAGAKVNAAIRTGEWYRLFTPLFLHGNTLHLIVNLSS 313
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
L S+GP +E G RRY +Y S + + S+ F +P+VGAS AIFGL+G+ A F +
Sbjct: 314 LKSLGPQIEATYGHRRYAALYLLSGLTGNLFSFFFNTAPSVGASSAIFGLIGAMAAFYVS 373
Query: 254 HRNILGGGKEE--LQHLAKVIIFNMAIGLLIKG-IDN 287
+ + G L+++A V + N+ GL IDN
Sbjct: 374 NTDWFGREHSHRVLRNIAWVTLLNLGQGLAPASRIDN 410
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 109 RKNSGHEGTSHLDTARTNLFIGRQWTNIL--LAVNVLVYIAQFATQDKLLLWGAKINSLI 166
K S H +D + G N+L L +N+ + Q + +GAK NSLI
Sbjct: 169 EKESNHPSARFIDKVPFITY-GLIIINVLMWLVMNIYALVKGTNVQSLFIPFGAKENSLI 227
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226
G++WR T FLHA++ HL++NC SL G +E + G ++++ +YF + I S S+
Sbjct: 228 FAGEYWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGIMGSIASF 287
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F AVGASGAIFGL+G+ F + + + K + ++I N+ G + GID
Sbjct: 288 MFSPHSAVGASGAIFGLMGALLYFSVENPALF--KKYFGNSILLMVIINLVYGFIRPGID 345
Query: 287 NWGH 290
N+GH
Sbjct: 346 NYGH 349
>gi|295397321|ref|ZP_06807413.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
gi|294974395|gb|EFG50130.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
Length = 223
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 18/168 (10%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL + ++++I +F + LLL+GAK N LI G++WRL T FLH I HL+
Sbjct: 9 TYTLLGIQIILFIMMEFMGSSESSATLLLFGAKFNPLIAAGEYWRLITPMFLHIGIVHLL 68
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RYL +Y +S + + SY+F + + GAS A+FGL FA
Sbjct: 69 INSITLYYLGSMVENIAGHWRYLVIYLASGLMGNLFSYQFSENISAGASTALFGL---FA 125
Query: 249 VFIM------RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
VF+ R+R+I G Q+L V I N+ G++ GID WGH
Sbjct: 126 VFLALKNLFPRNRHIQSIGS---QYLTLVGI-NLVFGMMGSGIDIWGH 169
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKG 169
E + + RTN F+ T IL A+N++V+ +A +T K L+L+GAK+N LI +G
Sbjct: 133 ERDKYFEFFRTNKFVPYV-TIILAAINIIVFSLMTLAGGSTNTKNLILFGAKVNELILQG 191
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL TS F+H HL N Y+L +G E+ G R+L +Y S +A S S+ F
Sbjct: 192 QVWRLFTSMFIHIGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGSVTSFLFT 251
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
++ + GASGAIFG++G+ + ++ + G ++L +I N+ IGL+ ID +
Sbjct: 252 DALSAGASGAIFGILGALVPYSWKNPRLWKSGFG--KNLVVIIAINLGIGLIQPQIDIYA 309
Query: 290 H 290
H
Sbjct: 310 H 310
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VF--IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + RH + G ++ +I+ N+ G+++ GIDN GH
Sbjct: 306 YFGTVYRHLFLQTIGT----NIIGLIVINLVFGMIVPGIDNAGH 345
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+LLA+N +VY+ Q ++ +GQ++RL T LH + HL VN S
Sbjct: 60 TNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMS 119
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC----NSPAVGASGAIFGLVGSFAV 249
+S+GP +E++ G +++ VY + IA + +S C +P+VGASGAIFG+VG++
Sbjct: 120 FSSVGPVVERVMGKAKFVTVYTLAGIAGNVLS---CIVNPRTPSVGASGAIFGMVGAWGA 176
Query: 250 FIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + + +LG + L+++A+ ++ N+ G+ IDN GH
Sbjct: 177 FCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGH 219
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWNGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F +R++ + ++ +I+ N+ G+++ GIDN GH
Sbjct: 306 YFGTVYRHLF--WQTIGTNIIGLIVINLVFGMIVPGIDNAGH 345
>gi|452991452|emb|CCQ97320.1| putative Rhomboid protease [Clostridium ultunense Esp]
Length = 400
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 11/165 (6%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
WT +L+A+N+LV++ + L+ +GAK N I G++WRL TS FLH+ H+
Sbjct: 194 WTYVLVAINLLVFLWLTVNGGSQNPETLIRFGAKYNPAIKAGEWWRLITSIFLHSGFFHV 253
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N +L +G +E++ G R+L +YF + + S S+ + ++ +VG+SGAI+GL G+
Sbjct: 254 ALNSIALYYLGLLVERMYGRARFLLIYFMAGLLGSVASFLYSDTVSVGSSGAIYGLFGAL 313
Query: 248 AVFIMRHRNIL--GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F MR R++ GK+ L +I N+ I +L+ ID + H
Sbjct: 314 LFFGMRRRDLFFRSFGKD----LLFIIGLNLLISVLVPSIDLYAH 354
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F +R++ + ++ +I+ N+ G+++ GIDN GH
Sbjct: 306 YFGTVYRHLF--WQTIGTNIIGLIVINLVFGMIVPGIDNAGH 345
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 7/145 (4%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+++ G +N L+ G+++RL T+ FLHA++ HL +N +LN+IG +EK+ G +++ VY
Sbjct: 53 IIVLGGMVNLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVY 112
Query: 215 FSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
S I +S SY N +VGASGAIFGL+GS + + ++ + GK L+ +
Sbjct: 113 ILSLIFASYGSYVVANVKLGIGISVGASGAIFGLLGSLLIIVFLNKKVF--GKTVLRGIT 170
Query: 270 KVIIFNMAIGLLIKGIDNWGHDMPG 294
+VI+ N+ IG + ID H G
Sbjct: 171 EVIVVNLLIGFFVPNIDITAHVTGG 195
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ +GAK+N LI G+ WRL TS F+H I HL N Y+L ++GP E+ G ++L
Sbjct: 168 QRVLIAFGAKVNDLIQAGEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTEEFFGHPKFL 227
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S SY F + + GASGAIFGL+G+ + ++ + G +L V
Sbjct: 228 MIYMFSGLGGSIASYLFSPALSAGASGAIFGLLGALLYYCIKRPYLWKSGLG--MNLVVV 285
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N G+ GIDN+ H
Sbjct: 286 ILVNFGFGISQPGIDNYAH 304
>gi|300853810|ref|YP_003778794.1| membrane-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433925|gb|ADK13692.1| putative membrane-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 337
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%), Gaps = 10/161 (6%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHL 187
I++A+NV VY F + +L++ GAK+NSLI G+++RL T FLHA I HL
Sbjct: 155 IIIALNVAVYTVTAYLSGNIFDSNINVLVFMGAKVNSLIASGEYYRLFTCMFLHAGIVHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN YSL +G +EK+ G +Y+ +Y S + SS S+ F +S +VGASGAIFGL+G+
Sbjct: 215 GVNMYSLYIMGSFVEKVYGKVKYIVMYLISGLVSSVFSFMFSSSISVGASGAIFGLLGAA 274
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
VF ++ ++ + GKE L ++ +I+ N+ IG I +DN+
Sbjct: 275 LVFAIKMKHKI--GKEFLMNVISIIVVNLIIGFSIANVDNF 313
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYI-AQFATQDK-------LLLWGAKINSLIDKGQFWRLA 175
+ NLF Q T+I++ +N+++++ + + D L+ GAK+NS I G+F+RL
Sbjct: 130 KNNLFSSNQITSIIIFLNIVIFLYSSYINGDIFDINTLILVQLGAKVNSYIINGEFYRLL 189
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVG 235
T FLH+ + H+ N Y+LN+IG +E++ G ++++ +Y + ++ S S+ F +VG
Sbjct: 190 TCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIFAGLSGSLASFLFSPYVSVG 249
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
ASGAIFGL G+ + ++ + + L LA VI+ N+ G GIDN+
Sbjct: 250 ASGAIFGLFGAALIMGLKLKKYINS--NFLGSLASVIVVNVIFGFSSTGIDNY 300
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 11/164 (6%)
Query: 136 ILLAVNVLVY-IAQF------ATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
IL+ +N +VY I+ + A +++L GAK + LID GQ++RL T FLHA I H+
Sbjct: 146 ILIVINFIVYGISAWLSGNPVAISNQVLNFMGAKNSVLIDNGQYYRLITCMFLHAGITHI 205
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
N YSL S+G +E I G RY +YF S I +S SY F S +VGASGAIFGL+G+
Sbjct: 206 GANMYSLYSMGYMLENIYGKLRYTAIYFISGITASFFSYIFSRESLSVGASGAIFGLLGA 265
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
VF + R + GK ++ V N+ I I ID + H
Sbjct: 266 AIVFGFKLRKRI--GKAFFANMVGVFALNIFISFTIPNIDIFAH 307
>gi|56420981|ref|YP_148299.1| hypothetical protein GK2446 [Geobacillus kaustophilus HTA426]
gi|56380823|dbj|BAD76731.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 390
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 186 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 241
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 242 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 301
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ +II N+ GLL+ GIDN GH
Sbjct: 302 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGH 345
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 134 TNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+ +++ +KLL +G+K N+ I +GQ+WR T FLHANI
Sbjct: 185 TYILIALNLFIFVIMGIYSWETGIDYNKLLFEFGSKENTSIIQGQYWRFITPMFLHANIM 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ +NCY+L IG E+I G +++ +YF + I + S+ F ++P VGASGAIFGL G
Sbjct: 245 HVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGNIFSFAFNSNPGVGASGAIFGLFG 304
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + + G ++ I+ N+ G GIDN+ H
Sbjct: 305 AVLFKCIEKPALFKSGLG--PNILGAILINLFYGFSKSGIDNFAH 347
>gi|375009531|ref|YP_004983164.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288380|gb|AEV20064.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 389
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 185 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 241 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ +II N+ GLL+ GIDN GH
Sbjct: 301 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGH 344
>gi|448238728|ref|YP_007402786.1| rhomboid family protein [Geobacillus sp. GHH01]
gi|445207570|gb|AGE23035.1| rhomboid family protein [Geobacillus sp. GHH01]
Length = 389
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 185 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 241 LHLLTNTLALYYLGITVERLYGSFRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ +II N+ GLL+ GIDN GH
Sbjct: 301 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGH 344
>gi|261417690|ref|YP_003251372.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319767503|ref|YP_004133004.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261374147|gb|ACX76890.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317112369|gb|ADU94861.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 386
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 182 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 238 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ +II N+ GLL+ GIDN GH
Sbjct: 298 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGH 341
>gi|297529385|ref|YP_003670660.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|297252637|gb|ADI26083.1| Rhomboid family protein [Geobacillus sp. C56-T3]
Length = 386
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 182 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 238 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ +II N+ GLL+ GIDN GH
Sbjct: 298 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGH 341
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
K+L W GAK N++I G+++RL TS FLH+ I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 KILYWMGAKHNNAIIFHGEYYRLVTSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 VIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N+ IGL + ID H
Sbjct: 302 ILLNVFIGLSMSNIDISAH 320
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 182 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 241
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 242 TNTFALYYLGITVERLYGSLRFLLIYTTAGFFGTLASFLFTPSISAGASGAIFGLFGALL 301
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F +R++ + ++ +I+ N+ GLL+ GIDN GH
Sbjct: 302 YFGTVYRHLF--FRTMGMNVVSLIVVNLLFGLLVPGIDNAGH 341
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ + ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVANALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I +S S F VGA
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFSLYFSPVMGVGA 268
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
SGAIFGL+G+ VF ++ + GK + ++ +I+ N+ IGL + ID H
Sbjct: 269 SGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVIILLNVFIGLSMSNIDISAH 320
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N+ IGL + ID H
Sbjct: 302 ILLNVFIGLSMSNIDISAH 320
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N+ IGL + ID H
Sbjct: 302 ILLNVFIGLSMSNIDISAH 320
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 186 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 246 TNTFALYYLGITVERLYGSLRFLLIYATAGFFGTLASFLFTPSISAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F +R++ + ++ +I+ N+ GLL+ GIDN GH
Sbjct: 306 YFGTVYRHLF--FRTMGMNVISLIVVNLLFGLLVPGIDNAGH 345
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGID 286
I+ N+ IGL + ID
Sbjct: 302 ILLNVFIGLSMSNID 316
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 7/164 (4%)
Query: 132 QWTNILLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
Q T ILLAVN+L+++ +Q +T L+ +GAK N I +G++WR+ +S FLH + H
Sbjct: 183 QMTYILLAVNILLFMFVESQGSTTSVSTLIEFGAKYNPAIMEGEWWRIGSSMFLHIGLLH 242
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N +L IG +E+I G R+ +Y + I S+ A GASGAIFGL G+
Sbjct: 243 LLMNMLALYYIGIAVERIYGTWRFSVIYLLAGIFGGVASFMLNPHVAAGASGAIFGLFGA 302
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F +RHR + K +L VI N+A G+++ +DN H
Sbjct: 303 LLYFGVRHRQLF--FKTMGWNLIFVIALNIAFGIMVPQVDNGAH 344
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T + +N+LV++ QD L+ +GAK+NSLI GQ WRL TS F+H HL
Sbjct: 135 TYAFIGINLLVFLLMTLAGGSENQDVLIAFGAKVNSLIQAGQVWRLLTSMFIHIGYFHLA 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E G +Y +Y S + + S+ F + GASGAI GL+G+
Sbjct: 195 FNLYALWALGPLTELSYGHGKYFAIYMLSGLGGAMASFLFSPFLSAGASGAIMGLLGAQL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
FI + + G +L VI+ N+ G GIDN+ H
Sbjct: 255 FFIYKRPYLWKSGLG--MNLVIVILVNLGFGFWQPGIDNFAH 294
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+N+ ++ Q D L+ GAK N LI +G++WRL TS FLH H+
Sbjct: 187 FTYILIALNLFFFLQQINNGGSENIDTLIQMGAKYNPLIMEGEWWRLLTSMFLHIGFVHI 246
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R+L +YF IA S S+ S + GASGAIFGL G+
Sbjct: 247 LMNMVALFYLGTAVERIFGRTRFLVIYFLGGIAGSIASFATSISISAGASGAIFGLFGAL 306
Query: 248 AVFIMRHRNILGGGKEEL-QHLAKVIIFNMAIGLLIKGIDNWGH 290
F + ++++ K+ + ++ +++ N+ IG I ID H
Sbjct: 307 LFFGLIYKDVF---KDTMGMNIVFILVVNLVIGFSIPEIDMGAH 347
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK + LI G+ WRL + AFLH + H+ N Y L IGP +E+I G +Y+ +Y
Sbjct: 196 LIFLGAKYSPLIYDGEIWRLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIY 255
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVF-IMRHRNILGGGKEELQHLAKVI 272
S I SS +S +S +VGASG IFGL+G+ F ++ +NI +E L K I
Sbjct: 256 LISCITSSTLSLIINPDSISVGASGGIFGLMGALLAFALIERKNI---DREYTVGLIKTI 312
Query: 273 IFNMAIGLLIKGIDNWGH 290
N+ IGL+I IDN H
Sbjct: 313 GINLVIGLIIINIDNAAH 330
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T ++A N+L + QFATQD L G L+ GQ+WR+ +S FLH +I H+ N Y
Sbjct: 11 TLTIMAANILFFAGQFATQDMLTNMGLLYGPLVQDGQYWRMISSGFLHGSILHIAFNMYL 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
L +GP +E G R+ +YF + I + +S+ F P +GASGA+ GL G A+FI
Sbjct: 71 LYMLGPQLESALGSVRFSLMYFGALIGGTLAVLSFGFMQ-PTLGASGAVLGLAG--AMFI 127
Query: 252 -MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ R I + +++ N+ + LLI GI WGH
Sbjct: 128 TLWGRGI----SPTKSPVFGLVVLNLGLPLLIPGISFWGH 163
>gi|410725976|ref|ZP_11364264.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410601611|gb|EKQ56119.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 512
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 134 TNILLAVNVLVYI----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A+N+L++ + T LL +G+K N I +G++WR FLH N
Sbjct: 185 TYILIALNLLIFALMGLYSWKSGTDYNTL--LLEFGSKENEHILQGEYWRFIAPIFLHVN 242
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
I H+ +NCYSL +G EKI G +++ +YF++ I + S+ F +P GASGAIFGL
Sbjct: 243 IVHVALNCYSLYLVGILAEKIFGKGKFIAIYFAAGILGNIFSFAFNMNPGAGASGAIFGL 302
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ + + G ++ +I N+ G GIDN+ H
Sbjct: 303 FGAILFICIEKPALFKSGLG--YNIVGIICINLFYGFTKSGIDNFAH 347
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 137 LLAVNVLVYI------AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++A+N++VY+ + F D +L GAK N+LI+ G+++RL T FLH+ I H+
Sbjct: 142 IIAINIVVYVISAILSSNFFDIDIRVLDFLGAKDNTLINSGEYYRLFTCMFLHSGIVHIA 201
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N YSL SIG +E I G ++Y+ +Y S + +S SY F + +VGASGAIFG++G
Sbjct: 202 SNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIASLFSYVFSSGISVGASGAIFGVLG--G 259
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V ++ H+ GK +++ VI N+ I I ID H
Sbjct: 260 VLVISHKLKHRIGKGLFRNIIFVIAINLFISFTIPNIDISAH 301
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N+ I L + ID H
Sbjct: 302 ILLNVFISLSMSNIDISAH 320
>gi|149181994|ref|ZP_01860480.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
gi|148850259|gb|EDL64423.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
Length = 485
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVY-IAQFA--TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I +A+ +LV+ + + A TQD L+ +GAK N LI G++WR T +H H+
Sbjct: 158 FTYIFIALQLLVFFVMEMAGGTQDTENLIRFGAKYNPLIVDGEWWRFFTPIVIHIGFLHM 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +GP +E+I G R+L +Y + + + S+ F +S + GASGAIFG G+
Sbjct: 218 LMNTFALYFLGPAVERIFGSARFLFIYLFAGFSGTLASFVFNDSLSAGASGAIFGCFGAL 277
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F H I + ++ VI N+A G I GIDN GH
Sbjct: 278 LYFGTAHPKIF--FRTMGTNILVVIGINLAFGFTIPGIDNAGH 318
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LAV + V+I T L+ +GAK N LI +GQ+WRL F+H I HL
Sbjct: 148 FTYVFLAVQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLIMPVFIHIGIMHL 207
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 208 FMNSLSLYYIGPLVERIYGKARFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 267
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+R++ + + +II N+ G + GIDN
Sbjct: 268 LYIGTAYRDLF--FRTMGSSVITLIIINLVFGFSVSGIDN 305
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V+ ++ L+ +GAK+NSLI G+ WR TS F+H HL N
Sbjct: 139 LIGINLVVFFLMTLAGGSQNREVLIAFGAKVNSLILAGEVWRFFTSMFIHIGYLHLGFNL 198
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
Y+L +GP EK+ G R+L +Y S + S S+ F + + GASGAIFGL+G+ +
Sbjct: 199 YALWVLGPFTEKLFGHWRFLVIYLLSGLGGSIASFFFTSGLSAGASGAIFGLLGALLYYS 258
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + G +L V++ N GL GIDN+ H
Sbjct: 259 LKRPWLWKSGLG--MNLVLVLVINFGFGLTQPGIDNFAH 295
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATPGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL++N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLVINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G++ V I R+R + K L L +++++ GL G+DN H
Sbjct: 302 AGAWLVAICRYRGQMPATLSKRLLTQLGMFVLYSLVQGLTKPGVDNAAH 350
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 134 TNILLAVNVLVYI----AQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLAVNV +++ A +T + L+ +GAK N I +G++WRL TS FLH + HLM
Sbjct: 184 TYLLLAVNVALFLLLEWAGGSTNVETLIEYGAKFNPAIMEGEWWRLVTSMFLHIGLIHLM 243
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E+I G RY+ +Y + + S S+ + GASGAIFGL G+
Sbjct: 244 MNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSVASFMLNPQVSAGASGAIFGLFGALL 303
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIF----NMAIGLLIKGIDNWGH 290
F + +R + Q + ++F N+A GL + IDN H
Sbjct: 304 YFGVWNRRLF------FQTMGWNLLFIIGLNIAFGLFVPQIDNGAH 343
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 71/106 (66%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI++G++WRL T FLH H +N ++L S+GP +E++ G R+L
Sbjct: 169 NTLVAFGAKVNPLIEQGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLI 228
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+Y S I +++ S+ F S + GASGA+FGLVG+ F +R R++
Sbjct: 229 IYLLSGILATSASFAFSESISAGASGALFGLVGALLYFGLRDRSLF 274
>gi|118442959|ref|YP_877647.1| rhomboid family membrane protein [Clostridium novyi NT]
gi|118133415|gb|ABK60459.1| conserved membrane protein (rhomboid family) [Clostridium novyi NT]
Length = 202
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GA N+L+ G+++RL T FLH + HL+ N Y+L +IGP +E+I G +Y+ +Y
Sbjct: 53 LLFLGANENTLVSNGEYYRLFTCMFLHGGLIHLLANMYALGAIGPIVERIYGKVKYIIIY 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I SS S+ F ++GASGAIF L+G + + ++I+G G ++ + +I+
Sbjct: 113 LVGGIISSIASHFFLRGVSIGASGAIFALLGVMLIITIERKDIVGNGV--IKDIVFIIVI 170
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IGL IDN+ H
Sbjct: 171 NIFIGLSSNDIDNFAH 186
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Query: 137 LLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+AVN+LV+I TQ+ L+ WGAK N LI +G+ WRL T F+H + HL +N
Sbjct: 14 LIAVNLLVFIGMTLSGGTQNAVNLIAWGAKYNPLIIQGELWRLFTPMFIHIGLEHLALNL 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L +G +E++ G R+L +Y S + + +S+ N+ + GAS ++FGL G++ +
Sbjct: 74 LTLYFLGVQLEQLFGKWRFLALYLISGVGGNILSFALSNNISAGASTSLFGLFGAYLMLG 133
Query: 252 MRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
R + ++ +++ +I+ N+ L GID WGH
Sbjct: 134 ESFRQ-----NQYIRMISRQFLVLIVLNLGFDLFAGGIDIWGH 171
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LA+ + V+I T L+ +GAK N LI +GQ+WRL T F+H HL
Sbjct: 174 FTYVFLALQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLITPVFIHIGFMHL 233
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 234 FMNSLSLYYIGPLVERIYGKGRFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 293
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+R++ + + +II N+ G + GIDN
Sbjct: 294 LYIGTAYRDLF--FRTMGSSVITLIIINLVFGFSVSGIDN 331
>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis]
gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]
Length = 429
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T+IL+++N+ V++ + A+ + LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 178 TSILVSINIAVFLFELASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGV 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+SL + GP + + G ++ ++ I+ + S+ P VG +G IF ++
Sbjct: 238 FHMALGCWSLLTFGPQVSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAII 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG-IDNWGH 290
G++ VF M++++++ E +II ++ L G ID+W H
Sbjct: 298 GAWLVFQMQNKDVIAKDISESMFQKAIIITGLSFILSHFGPIDDWTH 344
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVL ++A D L G + +G++WRL ++ FLHA +
Sbjct: 208 THALIALNVLAWLATLVLGGNPLQTPTDVLFNLGGNAAFEVQQGEWWRLLSATFLHAGVL 267
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL VN L + G T+E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 268 HLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 327
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G++ V I ++R + K L + +++++ GL G+DN H
Sbjct: 328 AGAWLVAIRQYRGRMPETLSKRLLTQIGLFVLYSLVQGLTKPGVDNAAH 376
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I+++VN++VY+ A +T ++L+ +GAK+NSLI G+ WR TS F+H HL+
Sbjct: 136 TYIIISVNLIVYLLMTLAGGSTDQRVLIEFGAKVNSLIQAGEIWRFFTSMFIHIGFMHLI 195
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+ S+GP +E+ G R+ +Y S + S S+ F + + GASGAIFGL+G+
Sbjct: 196 FNLYAFWSLGPFIEERFGHWRFFTIYSLSGLGGSIASFFFSPALSAGASGAIFGLLGALF 255
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ ++ G +L V++ N+ GL + GIDN+ H
Sbjct: 256 YYSIKRPSLWKSGLG--MNLVLVLLINLGFGLTMPGIDNFAH 295
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATLGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL +N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLAINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G++ + I R+R + K L L +++++ GL G+DN H
Sbjct: 302 AGAWLMAICRYRGQMPETLSKRLLTQLGVFVLYSLVQGLTKPGVDNAAH 350
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 24/177 (13%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 95 RFTYALIALNVLAWLV------TLLLGGNPLQTPISILFNLGGNAAFEVQHGEWWRLLSA 148
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G T+E+I GP YL +Y + + SA+S F A VG
Sbjct: 149 TFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 208
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H
Sbjct: 209 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAH 265
>gi|302758242|ref|XP_002962544.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
gi|300169405|gb|EFJ36007.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
Length = 1043
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQH------LAKVIIFNMAIGLLIKGI--DNWGH 290
V ++AV+I+++R G +E+Q + K+++ + L + DNW H
Sbjct: 759 VAAWAVYIIQNRQSFG---KEMQAGITSDVIQKILVMSALHLALTDALPADNWTH 810
>gi|302758654|ref|XP_002962750.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
gi|300169611|gb|EFJ36213.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
Length = 1043
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQH------LAKVIIFNMAIGLLIKGI--DNWGH 290
V ++AV+I+++R G +E+Q + K+++ + L + DNW H
Sbjct: 759 VAAWAVYIVQNRQSFG---KEMQAGITSDVIQKILVMSALHLALTDALPADNWTH 810
>gi|452975048|gb|EME74867.1| rhomboid protease YggP [Bacillus sonorensis L12]
Length = 512
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WR T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLIRFGAKENSLILAGEWWRFVTPIILHIGLIHLMFNTFALLSVGAAAERVFGSFRFLI 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ + S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYITAGVFGSIGSFLFSPYPSAGASGAIFGCLGALLFLAFSNRKAF--LKTIGTNIMVMI 326
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ +G + IDN GH
Sbjct: 327 ILNLGLGFAVSNIDNAGH 344
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +GP +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------QHL 268
+ A S S+ F S + GASGAIFG G+ F G K + ++
Sbjct: 277 LFAGFAGSLASFLFSPSVSAGASGAIFGCFGALLYF--------GKAKPHIFFRTIGMNV 328
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
VI N+A GL++ IDN GH
Sbjct: 329 ITVIGINLAFGLVVPNIDNAGH 350
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I +G++WRL +S FLH + HL++N +L +G +E+I G R+ +Y
Sbjct: 210 LIEYGAKYNPGIIEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQIYGSFRFTMIY 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + I SA S+ F S A GASGAIFGL G+ F R+ ++ + +L ++
Sbjct: 270 FLAGILGSAASFYFNTSVAAGASGAIFGLFGALLYFAWRYPSLF--FRTMGWNLIILVAI 327
Query: 275 NMAIGLLIKGIDNWGH 290
N+ G+ + +DN GH
Sbjct: 328 NIVFGITVPQVDNSGH 343
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L++ N+L+++A A+ L L WGA G++WRL T+ FLH +
Sbjct: 18 TKLLVSTNLLIFVAMLASGAGLWHSSNGVQLAWGANFGPATQDGEWWRLGTAMFLHFGLV 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N ++L G +E++ G R+ +YF+S +A + +S A+ GASGAIFGL
Sbjct: 78 HLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGNLLSLVAHKGLAISGGASGAIFGL 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL----AKVIIFNMAIGLLIKGIDNWGH 290
G+ VF+ R R L E + I ++ +GL I GIDN H
Sbjct: 138 YGALLVFLWRERGRL--HPHEFRWFFWGATAFAIVSLGLGLAITGIDNAAH 186
>gi|365851709|ref|ZP_09392132.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
gi|363716222|gb|EHL99633.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
Length = 211
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 137 LLAVNVLVY-IAQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LL + V+VY I F+ LL +GAK N LI G++WRL + F+H H+++N
Sbjct: 5 LLGIMVIVYVIMTFSGGTENTTTLLTFGAKFNPLIRAGEYWRLVSPIFIHIGFTHILMNG 64
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L IG +E + G R+LG++ +S I + S+ F +S + GAS AIFGL G+F +
Sbjct: 65 ITLYFIGQYVEMLFGHWRFLGIFLTSGIVGNLASFAFSDSLSAGASTAIFGLFGAFMMLG 124
Query: 252 MRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGH 290
N + + +AK I+ N+A L + GID GH
Sbjct: 125 ESFSN-----NQAIVSMAKTFLLFIVLNIATDLFVSGIDIAGH 162
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+++Y+ LLW G + N L+ KG++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLILYVLSLLPGVGTLLWNYGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHR 255
R
Sbjct: 141 YTR 143
>gi|159900030|ref|YP_001546277.1| rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893069|gb|ABX06149.1| Rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
Length = 286
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK + L+D G++WRL T+ LH I H+ N Y+L ++GPT+E+ G R+ +Y +
Sbjct: 69 GAKWSPLMDIGGEWWRLFTATVLHGGIVHIGFNMYALYALGPTVERFYGSLRFSVIYLIA 128
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIF 274
I + SY F P++GASGAIFGL+G F + R++LG ++ L+ +
Sbjct: 129 GIGGAWASYSFGSLTGPSIGASGAIFGLIGCLIGFFLSARSVLGDFARQNLRQMVGTAAI 188
Query: 275 NMAIGLLIKG-IDNWGH 290
N+ IGL IDN+ H
Sbjct: 189 NLIIGLSFSSVIDNYAH 205
>gi|321311972|ref|YP_004204259.1| membrane endopeptidase [Bacillus subtilis BSn5]
gi|320018246|gb|ADV93232.1| membrane endopeptidase [Bacillus subtilis BSn5]
Length = 507
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G RR+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSRRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAH 376
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI++G++WR T FLH + HL++N +L +G +E+I G R++ +Y
Sbjct: 211 LIRFGAKFNPLINEGEWWRFFTPIFLHIGLLHLLMNTLALYYLGTVVERIYGNVRFMLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
++ A S S+ F S + GASGAIFG G+ F + H + + ++ V+
Sbjct: 271 LAAGFAGSLASFVFSPSLSAGASGAIFGCFGALLYFGVIHPRLF--FRTMGMNILVVLGI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+A+G + GIDN GH
Sbjct: 329 NLALGFTLPGIDNAGH 344
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
+YF S I +S S F VGASGAIFGL+G+ VF ++ +G
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIG 291
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIA-QF----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+A+N ++Y+ +F + + L+ +GAK N LI G++WR+ TS FLH + H +
Sbjct: 187 TYLLIAINAILYLLLEFNGGSESNETLIEYGAKFNPLILDGEWWRVVTSMFLHIGLFHFI 246
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N L G EKI G R+ +Y + IA S S+ F + + GASGA++GL G+F
Sbjct: 247 SNMLFLYYFGSLAEKIYGSLRFFFIYMLAGIAGSVASFAFVTNLSAGASGALYGLFGAFI 306
Query: 249 VFIMRHRNIL--GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + H+ I GK+ L L N+ +G ++ +D H
Sbjct: 307 YFGLFHKKIFFRTIGKDILMLLG----INIVLGFVLPQLDVTAH 346
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 180 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 234 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 293
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H
Sbjct: 294 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAH 350
>gi|311069089|ref|YP_003974012.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|419820266|ref|ZP_14343877.1| membrane endopeptidase [Bacillus atrophaeus C89]
gi|310869606|gb|ADP33081.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|388475418|gb|EIM12130.1| membrane endopeptidase [Bacillus atrophaeus C89]
Length = 511
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH +AHL N ++L SIG +EKI G R+L
Sbjct: 210 ETLVAFGAKENSLIAAGEWWRLVTPIVLHIGLAHLAFNTFALWSIGTAVEKIYGSGRFLL 269
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y + + S S+ F P+ GASGAIFG +G+ + +R + K ++ +I
Sbjct: 270 IYLLAGVTGSIASFVFSPYPSAGASGAIFGCLGALLYLAVSNRKLF--LKTIGTNIIVII 327
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 328 IINLGFGFAVSNIDNSGH 345
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T LL VN+ +++ + + L+ +GAK N ++I+ G++WR+ S FLH I HL
Sbjct: 186 TYFLLTVNIFMFLLLELNGNSTSTETLIEFGAKYNPAIIEDGEWWRIVASMFLHIGILHL 245
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++ +G +E+I G R+L +YF + I S+ F + + GASGA+FGL G+
Sbjct: 246 LMNMLAVYYLGTVVERIYGSLRFLIIYFLAGIGGGLASFAFTTNVSAGASGALFGLFGAL 305
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIF----NMAIGLLIKGIDNWGH 290
F HR I Q + ++F N+ GL + +DN H
Sbjct: 306 LFFGCIHRRIF------FQTMGMNLLFIIGINIVFGLSVPQVDNGAH 346
>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]
Length = 468
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LLWGAKINS 164
H+ S +D+ + IL +VN+ V++ + A+ + LL+GAKIN
Sbjct: 230 HDPRSAIDSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINH 289
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 290 LIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFT 349
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL--I 282
S+ + P VG +G +F ++G++ ++ +++++++ E K +I I +L
Sbjct: 350 SFLHTSDPTVGGTGPVFAIIGAWLMYQIQNKHVIASDASE-NLFQKAVIMTALIFILSHF 408
Query: 283 KGIDNWGH 290
ID W H
Sbjct: 409 GPIDEWSH 416
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL ++ FLHA + HL +N + L + G +E+I GP YL +Y + + SA+S
Sbjct: 222 VQHGEWWRLLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGLLGSALS 281
Query: 226 YRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLL 281
F A VGASGA+FG+ G++ V I R+R+++ K L L +++++ GL
Sbjct: 282 LSFAAQHAIGVGASGAVFGVAGAWLVAIGRYRSLMPQTLSKRLLTQLGLFVLYSLVQGLT 341
Query: 282 IKGIDNWGH 290
G+DN H
Sbjct: 342 KPGVDNAAH 350
>gi|15613984|ref|NP_242287.1| hypothetical protein BH1421 [Bacillus halodurans C-125]
gi|10174038|dbj|BAB05140.1| BH1421 [Bacillus halodurans C-125]
Length = 514
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I G++WRL +S FLH I H M+N +L +G T+E+I G R+ +Y
Sbjct: 215 LIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFMMNSLALFYLGGTVERIYGTSRFFIIY 274
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + +A S S+ + GASGAIFG G+ F H+ + + + +++F
Sbjct: 275 FIAGLAGSIASFALNAHVSAGASGAIFGCFGALLYFGTVHKKLF--FRTMGSSVLLILVF 332
Query: 275 NMAIGLLIKGIDNWGH 290
N+A G +I IDN H
Sbjct: 333 NLAFGFIIPMIDNGAH 348
>gi|239827720|ref|YP_002950344.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239808013|gb|ACS25078.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 389
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 8/195 (4%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ-WTNILLAVNVLVYIAQF----ATQDKLL 156
FF +++ E + R G+ +T I +A+ VLV++ +T +L
Sbjct: 153 FFEAERLKQDILREAREQHERERRLFEYGKPVFTYIFIALQVLVFLLMEWSGGSTNPAVL 212
Query: 157 L-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ +GAK N LI +G++WR T FLH HL++N ++L +G T+E++ G R+ +Y
Sbjct: 213 IQYGAKFNPLIQEGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYL 272
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ F S + GASGAIFGL G+ F +R++ + ++ +II N
Sbjct: 273 IAGFFGTLGSFLFTTSLSAGASGAIFGLFGALLYFGTVYRHLF--FQTIGTNIIGLIIIN 330
Query: 276 MAIGLLIKGIDNWGH 290
+ G+++ GIDN GH
Sbjct: 331 LLFGIMVPGIDNAGH 345
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 20/191 (10%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKI 162
S + H++T+ L IG IL +VN+ V++ + A+ + LL+GAKI
Sbjct: 234 SAIDSQQHVETSSLYL-IG-----ILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKI 287
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 288 NHLIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACN 347
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLL 281
+S+ P VG +G +F ++G++ ++ +++++++ E L H K +I I +L
Sbjct: 348 FISFLHTPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFH--KAVIMTALIFIL 405
Query: 282 --IKGIDNWGH 290
ID W H
Sbjct: 406 SHFGPIDEWSH 416
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T FLH + HL++N SL +G +E++ G R+L +Y
Sbjct: 211 LIRFGAKFNLLIIEGEWWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ A S S+ F S + GASGAIFG G+ F + H + + ++ V+
Sbjct: 271 LFAGFAGSLTSFVFSPSLSAGASGAIFGCFGALLYFGVIHPGLF--FRTMGMNILVVLGI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+A+G + GIDN GH
Sbjct: 329 NLALGFTLPGIDNAGH 344
>gi|366085766|ref|ZP_09452251.1| membrane-associated serine protease [Lactobacillus zeae KCTC 3804]
Length = 229
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNTEVLIAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGEMTERLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R+ ++ L++ +++ N+A L G+D +GH
Sbjct: 137 LMLGDTYRD-----NPVIRQLSRQFLLLVVLNLAFNLFSSGVDIYGH 178
>gi|149199790|ref|ZP_01876820.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
gi|149137078|gb|EDM25501.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
Length = 454
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 19/173 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ----------DKLLLWGA-KINSLIDKGQFWRLATSAFLHA 182
T +++A+N++V+ + + D + WG+ +I ID+ WRL T AF+H
Sbjct: 115 TTVIIALNIIVFFLMYGIEKLNIIQPKNLDVFIQWGSNRIFETIDEP--WRLFTCAFIHF 172
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGA 239
+ H+ N Y L++IG EK+ GPR Y +Y SA S S + NS V GASGA
Sbjct: 173 GLLHIACNMYFLHAIGRLSEKLLGPRFYFIIYIFSAFTGSLASLLW-NSDGVISAGASGA 231
Query: 240 IFGLVGSFAVF-IMRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGH 290
+FG+VG F +MR ++ + L++ + ++++ N G L+ GIDN H
Sbjct: 232 VFGVVGMVGAFLVMRRDDVPPTAFKNLKNSMVQIVVLNFLFGTLVPGIDNAAH 284
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+ +Y+ LLW G + N LI G++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLTLYVLSLIPSIGTLLWNYGIQANFLIQSGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHR 255
R
Sbjct: 141 YTR 143
>gi|365157863|ref|ZP_09354108.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
gi|363622533|gb|EHL73692.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
Length = 397
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T LFI Q +AV +L+ I +T D L+ +GAK N LI G++WR T FLH
Sbjct: 186 TYLFIAVQ-----VAVFLLLEINGGSTNTDTLIRFGAKFNPLILDGEWWRFFTPIFLHIG 240
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL++N +L +G +EKI G R+L +Y S S S+ F + + GASGAIFG
Sbjct: 241 VLHLLMNTMALYYLGTMVEKIFGRWRFLWIYLFSGFLGSVASFVFTPNLSAGASGAIFGC 300
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F +R++ + ++ VII N+ G + GIDN GH
Sbjct: 301 FGALLFFGFVNRSLF--FRTIGMNVIVVIIINLIFGFTVPGIDNSGH 345
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 16/149 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T L+AVNVL+++ Q A+ D+L LW I + D Q++RL TSAFLH + HL+
Sbjct: 30 TYSLIAVNVLMFVLQMASGDRLTEELTLWAPGI-AFYD--QYYRLVTSAFLHYGVMHLLF 86
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSF 247
N ++L +GP +E+ G RY +Y SA+ S + Y N+P GASGAIFGL G+
Sbjct: 87 NMWALYVVGPPLEQWLGRLRYGALYALSALGGSVLVYLLTPINTPTAGASGAIFGLFGAI 146
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNM 276
V + R N+ +++ +A V+I N+
Sbjct: 147 FV-VARKLNL------DVRMIAAVVIINL 168
>gi|149919219|ref|ZP_01907702.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149819933|gb|EDM79355.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 383
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 136 ILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL +NV V++ + ++L+ WGA GQ+WRL T+ FLH + HL
Sbjct: 55 VLLGLNVAVWLLMVGMGVDAFEPSSEELVDWGANFGPKTASGQWWRLLTATFLHGGLIHL 114
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS 246
N Y L IG E+I YL +YF S + +SA S + +P+VGASGA+ G+ G+
Sbjct: 115 GFNIYFLWVIGRITEQIFRAPAYLVIYFGSGLCASAASLAWNPIAPSVGASGALLGVFGA 174
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGH 290
F F +R R +L + ++ A V+I N+A+ + IDN H
Sbjct: 175 FLGFTLRRREVLPPEFVQSVRRNAMVLIGLNVAVAFFMSNIDNAAH 220
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
++A+N++V++ ++LL G +N LI G++WR+ TS FLHA H++ N +SL
Sbjct: 21 IIAINLIVFVLTLIPGFGEELLYAGMSVNGLIAAGEWWRIITSMFLHAGFMHVLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R+L +YF + I A +Y ++ +VGASGA++G+ G+F +
Sbjct: 81 FLFGPELEKIAGKMRFLTIYFLAGIFGVAATYATQDAYYASVGASGALYGIFGAFGALVY 140
Query: 253 RHRNIL 258
R++
Sbjct: 141 YTRHLF 146
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A N+LV++A L WGA G++WRL T+ FLH I
Sbjct: 18 TKLIIAANILVFVAMLVKGAGFWHSPNAIQLAWGANFGPATQDGEWWRLGTAMFLHFGII 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL+VN +SL G +E++ G R+ G+Y S + + +S + AV GASGAIFG+
Sbjct: 78 HLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGNLVSLVIQGNAAVSGGASGAIFGV 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL---AKVI-IFNMAIGLLIKGIDNWGH 290
G+ F+ R R + + E + L A V + + G ++ GIDN H
Sbjct: 138 YGALLTFLWRERQSI--ARHEFRWLFWGASVFSVATIVFGFIVPGIDNSAH 186
>gi|386759084|ref|YP_006232300.1| membrane endopeptidase [Bacillus sp. JS]
gi|384932366|gb|AFI29044.1| membrane endopeptidase [Bacillus sp. JS]
Length = 503
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIA-----QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 175 FTYLFIALQVLMFFVLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 234
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 235 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 294
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R + + ++ +II N+ G + IDN GH
Sbjct: 295 LYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGH 335
>gi|317128371|ref|YP_004094653.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
gi|315473319|gb|ADU29922.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
Length = 524
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 118 SHLDTARTNLFIGRQW-TNILLAVNVLVY-IAQF----ATQDKLLLWGAKINSLIDKGQF 171
+ ++ R F G+ T ILLA +++Y I ++ + + L+ +GAK N LI +G++
Sbjct: 173 NQVEKDRKVFFYGKPIVTFILLATILIMYAIVEYNGSSMSTETLISFGAKFNPLILQGEW 232
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
WR ++ FLH HLM+N +L +G +E+I G R+L +Y + + S S+
Sbjct: 233 WRFFSAMFLHIGFFHLMMNSLALFYLGSAVERIYGTGRFLIIYLIAGLVGSIASFALNEQ 292
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAIFG G+ F ++H+ + + ++ ++ N+A G ++ IDN H
Sbjct: 293 VSAGASGAIFGCFGALLYFGIKHKRLF--FRTMGMNVIVILSINLAFGFIVPMIDNGAH 349
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 23/167 (13%)
Query: 136 ILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
I + V +L+ +A +T ++L+ +GAK+ +LI +GQ+WRL T FLH + HL+VN ++
Sbjct: 19 IQVIVFILMTVAGGSTNTQILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMHLVVNSVTV 78
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMR 253
IG +E + G R+L +YF SA+ + S+ F NS + GAS AIFGL G+F +
Sbjct: 79 YYIGTQIENMFGHARFLSIYFVSALTGNLASFVFLPNSLSAGASTAIFGLFGAFLML--- 135
Query: 254 HRNILGGGKEELQH----------LAKVIIFNMAIGLLIKGIDNWGH 290
E H + N+ L + GID +GH
Sbjct: 136 --------GESFHHNPYIRLLSRQFLTFVAINLVFDLFMPGIDIYGH 174
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 24/177 (13%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFNLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
ASGA+FG+ G++ V I R+R ++ K L L +++++ GL G+DN H
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLVQGLTKPGVDNAAH 376
>gi|402776749|ref|YP_006630693.1| membrane endopeptidase [Bacillus subtilis QB928]
gi|402481929|gb|AFQ58438.1| Membrane endopeptidase [Bacillus subtilis QB928]
Length = 505
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 202 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 261
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 262 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 319
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 320 IINLGFGFAVSNIDNSGH 337
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R ++ LA+ +++ N+A L G+D +GH
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGH 178
>gi|221310411|ref|ZP_03592258.1| hypothetical protein Bsubs1_13621 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314734|ref|ZP_03596539.1| hypothetical protein BsubsN3_13537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319657|ref|ZP_03600951.1| hypothetical protein BsubsJ_13458 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323934|ref|ZP_03605228.1| hypothetical protein BsubsS_13592 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767560|ref|NP_390367.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|418032339|ref|ZP_12670822.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915762|ref|ZP_21964388.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
gi|251757277|sp|P54493.2|GLUP_BACSU RecName: Full=Rhomboid protease GluP; AltName: Full=Intramembrane
serine protease
gi|225185188|emb|CAB14418.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|351471202|gb|EHA31323.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959733|dbj|BAM52973.1| membrane endopeptidase [Bacillus subtilis BEST7613]
gi|407965308|dbj|BAM58547.1| membrane endopeptidase [Bacillus subtilis BEST7003]
gi|452116110|gb|EME06506.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
Length = 507
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R ++ LA+ +++ N+A L G+D +GH
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGH 178
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFAT----QDKLLL--- 157
G GT H +A + R T IL+ VN+L+++ Q A +D+ L
Sbjct: 56 GGSGTGHAPSASAPRTLAGGTVAADPRLLTKILIGVNLLLFLVQQAVGDTFEDRFDLIGR 115
Query: 158 -WGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
W ++ S + +GQ++RL TS FLH ++ H++ N SL IG +E G RYL +
Sbjct: 116 AWDPELGSSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTL 175
Query: 214 YFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
YF S +A SA++Y N P++GASGAIFGL G+ V + R R
Sbjct: 176 YFVSGLAGSALTYLLAAPNQPSLGASGAIFGLFGATGVLMRRLR 219
>gi|1303863|dbj|BAA12519.1| YqgP [Bacillus subtilis]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q +L ++L + L+ +GAK NSLI +G++WRL T LH I
Sbjct: 180 TYLFIALQ----ILMFSLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGI 235
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
AHL N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +
Sbjct: 236 AHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCL 295
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ + +R + + ++ +II N+ G + IDN GH
Sbjct: 296 GALLYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGH 339
>gi|449094984|ref|YP_007427475.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
gi|449028899|gb|AGE64138.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|430759046|ref|YP_007208970.1| hypothetical protein A7A1_3554 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023566|gb|AGA24172.1| Hypothetical protein YqgP [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|384176109|ref|YP_005557494.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595333|gb|AEP91520.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|375090618|ref|ZP_09736932.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
gi|374565379|gb|EHR36650.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
Length = 228
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 134 TNILLAVNVLVYIAQFATQ------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
T L+A+NVLV+I T + L+ GAK N ++ +G+++RL T+AF+H H
Sbjct: 13 TYFLVAINVLVFIYMLMTFKTTTSFEALIETGAKSNPHIVYQGEWYRLVTAAFIHIGFEH 72
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L+ N S+ IG +E++ G R G++ ++I + S+ F + + GAS IFGL +
Sbjct: 73 LLFNNLSIYFIGQDLERLMGHLRLFGLFMIASIGGNIFSFAFSEAISAGASTGIFGLFVA 132
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + + G K+ + + +I+ N+ GL+ G+DNWGH
Sbjct: 133 YIILAKMYPQSY-GLKKRAMNFSLLILLNIVTGLMGSGLDNWGH 175
>gi|229552508|ref|ZP_04441233.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|258539881|ref|YP_003174380.1| membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|385835529|ref|YP_005873303.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314060|gb|EEN80033.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|257151557|emb|CAR90529.1| Membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|355395020|gb|AER64450.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
Length = 229
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R ++ LA+ +++ N+A L G+D +GH
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGH 178
>gi|428279976|ref|YP_005561711.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
gi|291484933|dbj|BAI86008.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
Length = 507
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 134 TNILLAVNVLVYIAQFA----TQDK---LLLWGAKINSLI-DKGQFWRLATSAFLHANIA 185
T ILL V ++V++ + T D L+ GAK I D Q+WRL T FLHA
Sbjct: 17 TTILLTVTIVVFVIELVVSGGTTDNSYFLVQVGAKWGPYIKDDSQYWRLITPIFLHAGFM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP E G R++LG+YF S I+ + SY F N+ +VGAS A+FGL
Sbjct: 77 HIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGLF 136
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----IKGIDNWGH 290
G +F + R+ ++ L ++ + + LL ID WGH
Sbjct: 137 GGLMIFAYQFRH-----DPNVRALGSMMGLFILLTLLSSFSATNIDLWGH 181
>gi|159485784|ref|XP_001700924.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158281423|gb|EDP07178.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 440
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
RQ TN+ LA+NV Y+ T ++L A I + +G++ RL T+ FLH + HL+ N
Sbjct: 233 RQVTNLFLAINVATYLVAR-TDRSVVLAMAAIPHEVARGEWHRLLTAGFLHTDFLHLLSN 291
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
+L+ +GP +E G R+ +Y S +A SA Y + V GASG + GL ++
Sbjct: 292 MLALHWLGPDLESAAGRGRFAAIYLLSVVAGSAAQYAWGGWGTVSWGASGGVAGLFAAYV 351
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
+ +R+RN G ++ +A+V+ N+ + ++ G
Sbjct: 352 TYRLRNRNYTGWSSADMSWVAQVVGLNVVLSMVAGG 387
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNLTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|56963491|ref|YP_175222.1| hypothetical protein ABC1726 [Bacillus clausii KSM-K16]
gi|56909734|dbj|BAD64261.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 523
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQ------DKLLLWGAKINSLIDKGQFWRLATS 177
R LF G+ L +++L+ + + L+ +GAK N LI +G++WRL ++
Sbjct: 174 RQTLFFGKPRVIYALLISILIMFSVLEANGGSTNIETLIDFGAKYNPLIVEGEWWRLFSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
FLH HL +N +L +G +E++ G R+L +YF + + SA+S+ F +S + GAS
Sbjct: 234 MFLHIGFFHLFMNGMALYFLGSAVEQLFGSIRFLVIYFMAGLFGSAVSFAFTDSLSAGAS 293
Query: 238 GAIFGLVGSFAVFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGID 286
GA+FG G+ F ++ ++ LG + + ++I N +G ++ GID
Sbjct: 294 GALFGCFGALLYFGIKQPSLFFRTLG------RSVIVLLIINFFLGFIVPGID 340
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|421768840|ref|ZP_16205550.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|421771007|ref|ZP_16207668.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
gi|411185689|gb|EKS52816.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|411186442|gb|EKS53566.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
Length = 229
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANLLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R ++ LA+ +++ N+A L G+D +GH
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGH 178
>gi|94968908|ref|YP_590956.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94550958|gb|ABF40882.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 365
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 17/171 (9%)
Query: 134 TNILLAVNVLVYIA------QFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NV V++A QF D L WGA G++WR+ TS FLH I
Sbjct: 61 TRILIGINVAVFLAMVLLTRQFVEFDTPTALRWGADYGPATASGEWWRMLTSMFLHGGIL 120
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
H++VN ++L ++G T E G + +L +Y S SA + + +S +VGASGAIFG+
Sbjct: 121 HILVNMFALRNLGYTAELFYGRKNFLIIYMLSGFGGSAATLLWRPDSVSVGASGAIFGVA 180
Query: 245 GSFAVFIM-----RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ A + R +L K ++ + VI +N+ IG + I+N H
Sbjct: 181 GALAAMVYFKKLPVDRALL---KRDIGSIGAVIFYNLLIGAALPIINNAAH 228
>gi|116789343|gb|ABK25213.1| unknown [Picea sitchensis]
Length = 301
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 12/167 (7%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N L A+N+ V++ + A+ K LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 52 NTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNGEWWRLITPKFLHSGLL 111
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + ++L + GP ++ G + +YF + + MS+ VG +G + ++G
Sbjct: 112 HIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVLAIIG 171
Query: 246 SFAVFIMRHRNILGGGKEE--LQHLAKVIIFNMAIGLLIKGIDNWGH 290
S+ +++ ++R LG + +Q +A + ++A+ L ID+W H
Sbjct: 172 SWIIYLFQNREALGEEMADNLIQKVAVASVLSVALSYLTP-IDDWTH 217
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVLV++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 178 VIAVNVLVWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 237
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 238 ANMVVLYLLGKHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQTSVSVGASGAVFGIGGA 297
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGH 290
V + HR L + L A ++I +++A G L +DN H
Sbjct: 298 LLVAALLHRRELPQNIRNRLVSDAVIMIGYSLAQGFLSTRVDNAAH 343
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYIALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T ILL + + V + L+ +GAK N LI +GQ+WR T F+H HL
Sbjct: 184 FTYILLVIQIAVLLVMELNGGSTNSTTLIKFGAKFNPLIIEGQWWRFLTPIFIHIGFLHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L IGP +E+I G R++ +Y + S+ F + + GASGAIFG G+
Sbjct: 244 IMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLASFAFSANLSAGASGAIFGCFGAL 303
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + + + + ++ VI N+A G ++GIDN GH
Sbjct: 304 LYFGLIYPKLF--FRTMGMNILVVIGLNLAFGFSMQGIDNAGH 344
>gi|443631783|ref|ZP_21115963.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347898|gb|ELS61955.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 507
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ L+ +GAK NSLI G++WRL T LH IAHL
Sbjct: 179 FTYVFIALQVLMFFLLELNGGSTNTQTLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R + + ++ +II N+ G + IDN GH
Sbjct: 299 LYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGH 339
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 15/166 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NV ++I D L+ GAK + LI G++WR+ TS F+H HL+
Sbjct: 192 TYALLVMNVFIFILIELYGDSESILTLVEVGAKYSPLILDGEWWRIITSMFIHIGFLHLL 251
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E+I G R++ +YF++ + + +S+ S GASGAIFGL G+
Sbjct: 252 MNSLALYFLGTLVERIYGSFRFVFIYFTAGVIGTLVSFWMNLSIGAGASGAIFGLFGALL 311
Query: 249 VFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + +R + +G ++ V+ N+A G LI +DN H
Sbjct: 312 YFGLNYRKLFFRTMGA------NVLIVLAINLAFGFLIPVVDNSAH 351
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 134 TNILLAVNVLVYIAQFA----TQDK---LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL V V+V++ + T D L+ GAK I Q+WRL T FLHA
Sbjct: 14 TTILLTVTVVVFLIELVVSGGTTDNSYFLVQVGAKWGPYIKGDSQYWRLITPIFLHAGFM 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H+ N +L IGP E G R++LG+YF S I+ + SY F N+ +VGAS A+FGL
Sbjct: 74 HIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGLF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----IKGIDNWGH 290
GS +F ++R+ ++ L ++ + + LL ID WGH
Sbjct: 134 GSLMIFAYQYRH-----DPNVRALGSMMGLFVLLTLLSSFSATNIDLWGH 178
>gi|423682997|ref|ZP_17657836.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
gi|383439771|gb|EID47546.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
Length = 512
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S+ I S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAF--LKTIGTNIIVII 326
Query: 273 IFNMAIGLLIKGIDN--------------WGHDMPGRRVPLQLLG 303
I N+ +G I +DN +PG++ PLQ L
Sbjct: 327 ILNLGLGFTISNVDNAGHIGGLIGGLLTALAVGIPGKKRPLQRLA 371
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVL+++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 199 MIAVNVLIWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 259 ANMVVLYLLGTHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQASVSVGASGAVFGIGGA 318
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGH 290
V + HR L + L A ++I +++A G L +DN H
Sbjct: 319 LLVAALLHRRELPQSIRNRLVSDAVIMIGYSLAQGFLSTRVDNAAH 364
>gi|52081023|ref|YP_079814.1| integral membrane protein GluP [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319645019|ref|ZP_07999252.1| YqgP protein [Bacillus sp. BT1B_CT2]
gi|404489905|ref|YP_006714011.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004234|gb|AAU24176.1| TPR motif integral membrane protein GluP [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348902|gb|AAU41536.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392828|gb|EFV73622.1| YqgP protein [Bacillus sp. BT1B_CT2]
Length = 512
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S+ I S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAF--LKTIGTNIIVII 326
Query: 273 IFNMAIGLLIKGIDN--------------WGHDMPGRRVPLQLLG 303
I N+ +G I +DN +PG++ PLQ L
Sbjct: 327 ILNLGLGFTISNVDNAGHIGGLIGGLLTALAVGIPGKKRPLQRLA 371
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 18/168 (10%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+ +N+L ++A + ++ G I L + ++WRL TS FLH ++
Sbjct: 29 TYALIGINLLAFVAVVLQAGGVASLLQRSTIMQQGTLITGLGFQDEYWRLLTSGFLHWSV 88
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFG 242
H+ +N SL IG +E++ GP RYL VY + SA M+ N GASGA++G
Sbjct: 89 VHIAMNMISLYLIGADLERVLGPVRYLAVYLIGLLGGSAAVMALGSENVATAGASGAVYG 148
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ + ++R K L VI+ N+ + L I GI W H
Sbjct: 149 LLGALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGISIWAH 189
>gi|160886529|ref|ZP_02067532.1| hypothetical protein BACOVA_04540 [Bacteroides ovatus ATCC 8483]
gi|423289697|ref|ZP_17268547.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
gi|156108414|gb|EDO10159.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|392667408|gb|EIY60918.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
Length = 592
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHRNILGGGKEELQH-LAKVIIF---NMAIGLLIKGIDNWGH 290
G F F++ HR KE+ + LA ++IF N+ G+ GIDN H
Sbjct: 284 GIFLAFLLFHRI----AKEQRKALLASILIFVGYNLVYGMK-AGIDNAAH 328
>gi|293373190|ref|ZP_06619552.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|292631838|gb|EFF50454.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
Length = 584
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|383113335|ref|ZP_09934107.1| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
gi|382948721|gb|EFS32339.2| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
Length = 592
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 283
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 284 GIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 328
>gi|237723366|ref|ZP_04553847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229447888|gb|EEO53679.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 584
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|423298194|ref|ZP_17276253.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
gi|392663610|gb|EIY57158.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
Length = 592
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 328
>gi|336395216|ref|ZP_08576615.1| membrane-associated serine protease [Lactobacillus farciminis KCTC
3681]
Length = 225
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 137 LLAVNVLVYIAQF---ATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V V++ + +Q+ L L +GAK N L+ +GQ+WRL T FLH I H+++N
Sbjct: 16 LLAITVAVFLLETISGGSQNLLTLIHFGAKTNYLVQEGQWWRLITPIFLHIGIFHILMNG 75
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF-- 247
++L +G +E + G R+L VY S I + S+ F N+ + GAS ++FG+ +F
Sbjct: 76 FTLLYVGQILEPMIGHWRFLIVYMLSGIMGNLASFAFGANNAISAGASTSLFGMFAAFLS 135
Query: 248 -AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+ +R + GK L +I+ N+ + L + GID WGH
Sbjct: 136 LAIIYRENRFLTELGKSFL----GLIVINLLMDLTMSGIDIWGH 175
>gi|299149420|ref|ZP_07042477.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
gi|298512607|gb|EFI36499.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
Length = 592
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 284 GIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 328
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LL V V++Y+ LL +GA+ N L+ GQ+WRL T F+H H++
Sbjct: 16 TYLLLFVMVVIYLLMTMNGGSENVFNLLKFGAQSNQLVRDGQWWRLITPIFVHIGFQHIL 75
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RY ++ S I + MS+ N + G+S AIFGL G+F
Sbjct: 76 INGITLYYLGKLIEPIVGHLRYFIIFMVSGICGNLMSFALGNGISAGSSTAIFGLFGAFL 135
Query: 249 VFIMRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGH 290
+ ++R G + ++ AK ++ N+ + GID +GH
Sbjct: 136 MIAFQYR-----GNDFVRSTAKTFVLFVVINLVFDIFTPGIDIYGH 176
>gi|336417117|ref|ZP_08597446.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
gi|335936742|gb|EGM98660.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
Length = 592
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 328
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD----KLLLWGA----KINSLIDKGQFWRLATSAFLHA 182
R T IL+ +NV V++A A D L+L+GA S + +GQ++RL T+ FLH
Sbjct: 69 RLITMILIGINVAVFLAVQAVGDSLVQDLILYGAWPPVDPTSGVAEGQWYRLLTATFLHQ 128
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAI 240
N+ H+ N SL IGP +E G R+L VY SA+ SA+S+ N A +GASGA+
Sbjct: 129 NVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSALGGSALSFLLANPNAGSLGASGAV 188
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
FGL+G+ V + R R + + + +I+ N+ G +W
Sbjct: 189 FGLLGATFVLMRRLRY-------DSRPIVAIIVLNLFFTFAQTGTIDW 229
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 137 LLAVNVLVYIA---QFATQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+AVN+ +IA Q LLL GA + L + ++WRL TS FLH +I H+
Sbjct: 32 LIAVNLAAFIAVVLQAGGTSNLLLKSSIMQQGALVTGLGLENEYWRLLTSGFLHWSILHV 91
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVG 245
+N SL IG +E++ GP RYL VY SA A GASGAI+GL+G
Sbjct: 92 AMNMISLYLIGADLERVLGPARYLAVYLIGLFGGSAAVVALGPELAATAGASGAIYGLLG 151
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + ++R K L VI+ N+ + L I GI W H
Sbjct: 152 ALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGISIWAH 189
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL------IDKGQFWRLATSAF 179
R T IL+ VN+L+++ Q D L+ A + L + +GQ++RL TS F
Sbjct: 82 RLLTKILIGVNLLLFLVQQILGDTFTDRFDLIGRAWVPELGTSLQGVAEGQWYRLVTSMF 141
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH ++ H++ N SL IG +E G RYL +YF+S +A SA++Y N P++GAS
Sbjct: 142 LHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAGSALTYLLAAPNQPSLGAS 201
Query: 238 GAIFGLVGSFAVFIMRHR 255
GAIFGL G+ V + R R
Sbjct: 202 GAIFGLFGATGVLMRRLR 219
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH I HL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGITHLAFNTLALWSVGTVVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGH 290
I N+ G + IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 25 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 84
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI--MRHRNILGGGKEELQHLAK 270
+Y S I + S+ F +VGAS A+FGL G+F + + R + + Q A
Sbjct: 85 IYLLSGIVGNIASFVFNTGISVGASTALFGLFGAFFMLVEAFRQNTAI---RAMGQQFAL 141
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ N+A L GID GH
Sbjct: 142 FIVLNLAFDLFNPGIDLAGH 161
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 14/160 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+Y+ Q A+ + +LW + + G+++RL TSAFLH + HL+ N
Sbjct: 77 TYTLIAVNVLMYVLQRASTGFTEAFVLWAPAVAA----GEYYRLVTSAFLHFGLMHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L IG +E G R+ +Y SA+ S + Y +P GASGA+FGL A +
Sbjct: 133 MFALYVIGGPLEAALGRLRFGLLYALSALGGSVLVYLLAMNPTAGASGAVFGLFA--ATY 190
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ R L +++ + +I+ N+ I ++ GI GH
Sbjct: 191 VVAKRLNL-----DVRFVTGLIVVNLVITFVVPGISWQGH 225
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLL--WGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F T + LL +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSLLVAFGAKWGPYIKAYDQYWRLVTPIFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ ++ ++ I + + + ++ N+ G GID WGH
Sbjct: 138 ILYAIQFKHDPRI----RAQGTMMGLFVVLNLMSGFFSTGIDMWGH 179
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ RN ++ +A+ +++ N+ GID WGH
Sbjct: 131 MLGESFRN-----NAYIKMMARQFLLLVVLNIFFDFFSSGIDIWGH 171
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 39 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 98
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLA 269
+Y S I + S+ F +VGAS A+FGL G+F + + R I G Q A
Sbjct: 99 IYLLSGIVGNIASFVFNMGISVGASTALFGLFGAFFMLVEAFRQNTAIRAMG----QQFA 154
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
I+ N+A L GID GH
Sbjct: 155 LFIVLNLAFDLFNPGIDLAGH 175
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 20/169 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ + VLV++A + + L+ +GAK+N LI +GQ+WRL T FLH H+
Sbjct: 18 TTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQGQWWRLITPMFLHIGFTHIF 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E G R+L ++ + I + S+ F NS + GAS AIFGL G+F
Sbjct: 78 LNMVTLYFVGTQLEAAFGHARFLIIFLVAGIGGNVASFCFLNSLSAGASTAIFGLFGAFM 137
Query: 249 VFIMRHRNILGGGKEE---LQHLAKV----IIFNMAIGLLIKGIDNWGH 290
+LG + ++ LA+ ++ N+A L GID GH
Sbjct: 138 --------MLGESFWQNPIIRQLARTFLAFVVMNIAFDLFTPGIDLAGH 178
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I + LL WGA + +GQ+WRL T+ FLH I
Sbjct: 156 TPILIDLNILVFILMTISGVNILMPDNESLLNWGANFRPITLEGQWWRLLTNCFLHVGIF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
HL++N Y+L IG +E + G R++ Y + I +S S + + + + GASGAIFG+
Sbjct: 216 HLLLNMYALLYIGVLLEPLLGRTRFISAYLLTGITASITSLWWHDLTISAGASGAIFGMY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F + + K L +A + +N+ GL GIDN H
Sbjct: 276 GVFLAMLTTNLIEKTARKPLLTSIAVFVGYNLIYGLK-GGIDNAAH 320
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPSVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ RN Q L V++ N+ I GID WGH
Sbjct: 131 MLGESFRNNAYIKMMSRQFLLLVVL-NIFIDFFNSGIDIWGH 171
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ N LI GQ+WRL T FLH + HL++NC +L +G +EK G RYL ++
Sbjct: 41 LLRYGAQSNPLIQAGQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEKTVGHFRYLVLF 100
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR-NILGGGKEELQHLAKVII 273
S I + S+ N + G+S AIFGL+G F + + R N+L E A +
Sbjct: 101 LGSGIGGNLFSFAAGNVISAGSSTAIFGLLGVFLMLSLVVRGNLL--ITETGITFAVFVG 158
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ + ID WGH
Sbjct: 159 LNLLTDFFVPQIDIWGH 175
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSILVAFGAKWGPYIKVYDQYWRLVTPLFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIM--RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + +H + + + + + ++ N+ G GID WGH
Sbjct: 138 ILYAVQFKHDSRI---RAQGTMMGLFVVLNLMSGFFSTGIDMWGH 179
>gi|398304447|ref|ZP_10508033.1| hypothetical protein BvalD_02972 [Bacillus vallismortis DV1-F-3]
Length = 507
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI G++WRL T LH I HL
Sbjct: 179 FTYLFIALQVLMFFLLEIKGGSTNTETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIVHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTEVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R + + ++ +II N+ G + IDN GH
Sbjct: 299 LYVALSNRKMF--FRTIGTNIIVIIIINLGFGFAVSHIDNSGH 339
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+G + N LI KG++WR+ ++ FLHA H+ N +SL GP +EKI G R++ +Y S
Sbjct: 4 YGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVS 63
Query: 218 AIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNIL 258
I + +Y F +S ++GASGAIFG+ G+F + R +
Sbjct: 64 GIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRKTM 106
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 101/178 (56%), Gaps = 19/178 (10%)
Query: 116 GTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
G + + TAR + WT LLA+N+L Y+A+ ++++ + + +G++WRL
Sbjct: 72 GGAPVTTARVS------WT--LLAINLLAYVAEVLDPERVISAYGMWSIGVYQGEWWRLI 123
Query: 176 TSAFLHA---NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP 232
TSAFLHA + H++ N ++L IGP +E++ G R+ +Y SA+ S Y F
Sbjct: 124 TSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLLSALGGSVAIYLF-GVA 182
Query: 233 AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+GASGAI+GL G A+F++ R LG +++ + +I N+ I ++ GI GH
Sbjct: 183 ALGASGAIYGLFG--ALFVVARR--LG---TDVRGVLWLIGINVLITFVVPGISWQGH 233
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 12/137 (8%)
Query: 131 RQWTNILLAVNVLVYIAQF----ATQDKLLLWG----AKINSL--IDKGQFWRLATSAFL 180
R T +L+ +N+ ++ Q A D+ L G + NS+ + +GQ++RL T+ FL
Sbjct: 69 RLVTKVLIGLNLAFFLVQLSVGDAFTDRFSLLGQAYVPQFNSVEGVAQGQWYRLITAMFL 128
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
HAN H++ N SL IG +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 129 HANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGSALTYLLAAPNQPSLGASG 188
Query: 239 AIFGLVGSFAVFIMRHR 255
AIFGL G+ AV + R R
Sbjct: 189 AIFGLFGATAVLMRRLR 205
>gi|255690223|ref|ZP_05413898.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
gi|260624242|gb|EEX47113.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 584
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ + LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVEIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 29/192 (15%)
Query: 109 RKNSGHEGTSHLDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDK------- 154
++ G G + AR G R +T IL+A+N+ V++ A D+
Sbjct: 96 QRGGGGTGRAPRGDARPRTLAGGVVQGDPRLFTKILIALNLAVFLLVQAVPDQQRLLDDL 155
Query: 155 ------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L +GA + +G+++RL T+AFLH I H+ VN SL +GP +E + G
Sbjct: 156 EMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRA 215
Query: 209 RYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R+L +Y +A+ S SY F N+ ++GASGAIFGL G+ + ++R R +++
Sbjct: 216 RFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVR-------ADVR 268
Query: 267 HLAKVIIFNMAI 278
+++ N+ I
Sbjct: 269 PFVALLVINLII 280
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLW-------GAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L+ G I+ Q+WRL TS FLH ++ H
Sbjct: 18 TYTLIAINVVVFAAVLLQAGGTTLFYSSIYREGVLISGAGFDDQYWRLLTSGFLHQSVPH 77
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L +N +SL IG +E+ G RYL +Y S + SA M+++ + GASGAI+GL+
Sbjct: 78 LAINMFSLYIIGADLERALGRGRYLAIYLVSLLGGSAAVMAFQSGVTATAGASGAIYGLM 137
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ + ++R K +Q + VI N+ I + I GI +GH
Sbjct: 138 GALLILLLRV-------KAPVQTVLGVIAINIVISVTIPGISLFGH 176
>gi|298480750|ref|ZP_06998946.1| S54 family peptidase [Bacteroides sp. D22]
gi|298273184|gb|EFI14749.1| S54 family peptidase [Bacteroides sp. D22]
Length = 584
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|295085069|emb|CBK66592.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
Length = 584
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|336406188|ref|ZP_08586849.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
gi|335935437|gb|EGM97389.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
Length = 584
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N+ V+ A A L L WGA GQ+WRL ++ FLH +
Sbjct: 22 TVVLIALNLAVFAAMLAGGAGLWHSQNGVQLAWGANFGPATKDGQWWRLGSAMFLHFGLL 81
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N SL G +E++ GP R+L +Y S + + +S AV GASGAIFG+
Sbjct: 82 HLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGDRAVSGGASGAIFGV 141
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL----AKVIIFNMAIGLLIKGIDNWGH 290
G+ F+ + R+ L + E L + +GL I GIDN H
Sbjct: 142 YGALLAFLWQQRDTL--DRREFVRLFWGAGLFAAITIVLGLNIPGIDNGAH 190
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 15/140 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 32 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 91
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 92 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 151
Query: 236 ASGAIFGLVGSFAVFIMRHR 255
ASGAIFGL G+ + ++R R
Sbjct: 152 ASGAIFGLFGATGILVLRVR 171
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV +++ FA D L +GA LID+G+ WRL FLH + HL+ N
Sbjct: 63 VLIGINVAMFLLTAFAGGSTDPDVLTAFGACNRKLIDQGEVWRLVVPMFLHIGMIHLLAN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 123 MYALWVLGPQLESLYGSARFTILYLLSGIGGFVASYFFAHPESIGAGASGALFGMFGALL 182
Query: 249 VFIMRHR-NILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGH 290
VF+ ++R I + +Q + +I N+ I I I GH
Sbjct: 183 VFVYKYRAEIPPMVRATMQRGVWLTLIINLVITFSIPFISRSGH 226
>gi|403237491|ref|ZP_10916077.1| rhomboid protein membrane-associated serine peptidase [Bacillus sp.
10403023]
Length = 515
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+ ++++ + LL +GAK N I G++WR T LH HL
Sbjct: 183 FTYILIAIQLIMFAVLELYGGSTNTETLLKYGAKENFRILNGEWWRFFTPMILHIGFIHL 242
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +G +E++ G R+L +Y + S S+ F + + GASGAIFG G+
Sbjct: 243 LMNTFALYYLGTEVERLYGKSRFLMIYVFAGFLGSLASFVFNANISAGASGAIFGCFGAL 302
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + ++ + ++ +II N+ +G +I GIDN GH
Sbjct: 303 LFFGTAYPSLF--FRTMGPNVIGIIIINLVLGFMIPGIDNSGH 343
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+N+ ++I + ++LLL+G N LI G++WRL T FLH + HL+ N
Sbjct: 18 VTFLLALNIGIFILTWIPGIGNQLLLFGIGDNFLIANGEYWRLVTPMFLHGGLTHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVGSFAV 249
+SL GP +EKI G R++ +Y + + +Y + +GASGAIFG+ G+F
Sbjct: 78 FSLFIFGPELEKIAGKARFITIYMLAGLFGDVATYFLQSGDYRHLGASGAIFGVFGAFGA 137
Query: 250 FIMRHRNIL 258
+ +++
Sbjct: 138 LVYYTKHVF 146
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 88/163 (53%), Gaps = 8/163 (4%)
Query: 134 TNILLAVN-VLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+ +N +L ++ F ++ WG N ++ G++WRL T FLH ++ H +
Sbjct: 19 VSVLVIINLILWFVVNFLGLPIGREIYYWGVGSNFMVAAGEYWRLVTPIFLHGDLMHALF 78
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N +SL GP +E++ G ++L +F + I ++A +Y F N +GASGAIFGL G +
Sbjct: 79 NSFSLVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPLNYTHLGASGAIFGLFGIY 138
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ ++++ Q + ++I ++ + L I+ + H
Sbjct: 139 TFMVLFRKHLIDYSSS--QMITTILIISLVMTFLRNNINIYAH 179
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLITPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|297584599|ref|YP_003700379.1| rhomboid protease [Bacillus selenitireducens MLS10]
gi|297143056|gb|ADH99813.1| Rhomboid protease [Bacillus selenitireducens MLS10]
Length = 526
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK + I G++WR ++ F+H HL +N +L +G +E+I G R+ G+Y
Sbjct: 219 LVEFGAKYDPAILDGEWWRFVSAMFIHIGPLHLFMNSLALFFLGAAVERIFGTGRFFGIY 278
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + + S S+ F ++ + GASGAIFGL G+ F +RH+ + + ++ ++
Sbjct: 279 FLAGLFGSVASFVFNDNISAGASGAIFGLFGALLYFGVRHKKLF--FRTMGMNILVILGI 336
Query: 275 NMAIGLLIKGIDNWGH 290
N+ G ++ +DN H
Sbjct: 337 NLVFGFVVPMVDNGAH 352
>gi|393788564|ref|ZP_10376691.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
gi|392654244|gb|EIY47892.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
Length = 467
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 134 TNILLAVNVLVYIAQ-------FATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +NVLV+I F + +LL WGA L G +WR T F+H I
Sbjct: 38 TPILLGINVLVFILMTLSGVNLFEPKTLELLQWGADFGPLTLTGSWWRTLTCNFVHIGIV 97
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
H+++N Y+L IG +E + G RR Y + + S+ S + + + GASGAIFGL
Sbjct: 98 HILMNMYALVYIGVLLEPMFGTRRMFAAYLLTGLCSAVSSLFWHAETISAGASGAIFGLY 157
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIF---NMAIGLLIKGIDNWGH 290
G F F+ H +I + L L+ ++IF N+ GL +GIDN H
Sbjct: 158 GIFLAFLCFH-HIEKAQRNAL--LSSILIFVGYNLIYGLK-EGIDNAAH 202
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 22/163 (13%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 125 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 184
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 185 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 244
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAI 278
ASGAIFGL G+ + ++R R +++ +++ N+ I
Sbjct: 245 ASGAIFGLFGATGILVLRVR-------ADVRPFVALLVINLII 280
>gi|29347217|ref|NP_810720.1| hypothetical protein BT_1807 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339116|gb|AAO76914.1| conserved protein, with rhomboid family domain [Bacteroides
thetaiotaomicron VPI-5482]
Length = 586
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ S Y + + GASG+IFGL G F F++ HR K L + + +N
Sbjct: 249 TGLCSAVFSLYMHAETISTGASGSIFGLYGIFLAFLLFHRIERSQRKALLTSILIFVGYN 308
Query: 276 MAIGLLIKGIDNWGH 290
+ G+ G+DN H
Sbjct: 309 LIYGIR-AGVDNAAH 322
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 33/207 (15%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQ-----WTNILLAVNVLVYIAQFATQDKL----- 155
GG + H G + +F R T +LAVNVLV++ A L
Sbjct: 4 GGQEQRRQHRGYQEAGFGQRTVFGARLSRSVLVTQAILAVNVLVFLLTVAQAGSLNDNDL 63
Query: 156 -------LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+G ++ + G++WR+ T+ FLH H+ VN +SL +G ++E++CG
Sbjct: 64 SSAFQHGALYG---DATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQVCGRG 120
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHR-NILGGGKE 263
R+L +YF S + +SA F N VGASGA+FGL+G++AV +++ R N G
Sbjct: 121 RFLALYFVSMLGASASVLLFGNPGGYPGTVGASGALFGLMGAYAVTVLKLRLNPTG---- 176
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L + N I I GI +GH
Sbjct: 177 ----LIITLALNAFITFGIPGISIFGH 199
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L +N+ VY+ + + GA IN LI +G++WR+ T+ F+H H++ N + L
Sbjct: 21 FLLINIAVYLVGLVPSIGNWIFAKGAAINFLIAQGEYWRVVTAIFIHGGFMHVLSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIM 252
GP +E+I G R+ +Y + I + +Y + N +VGASGAIFG++G+F +
Sbjct: 81 YVFGPELERIAGKARFFTIYMLAGILGNVFTYIWQPLNYASVGASGAIFGILGAFLALVY 140
Query: 253 RHRNILGGGKEELQHLAKV 271
R I K+ + L +
Sbjct: 141 YTRKIFPQLKQMIVPLVVI 159
>gi|227510498|ref|ZP_03940547.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190150|gb|EEI70217.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 234
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ +S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLASGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+IFGL G+F + R++ I+ + L I+ N+A + + GID GH
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIAGH 185
>gi|262409313|ref|ZP_06085856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644959|ref|ZP_06722693.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294805963|ref|ZP_06764830.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509393|ref|ZP_08788992.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|229446228|gb|EEO52019.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|262352765|gb|EEZ01862.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639680|gb|EFF57964.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294446845|gb|EFG15445.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 584
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|383125162|ref|ZP_09945818.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
gi|251838549|gb|EES66635.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
Length = 586
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ S Y + + GASG+IFGL G F F++ HR K L + + +N
Sbjct: 249 TGLCSAVFSLYMHAETISAGASGSIFGLYGIFLAFLLFHRIERSQRKALLTSILIFVGYN 308
Query: 276 MAIGLLIKGIDNWGH 290
+ G+ G+DN H
Sbjct: 309 LIYGIR-AGVDNAAH 322
>gi|419714376|ref|ZP_14241793.1| rhomboid family protein [Mycobacterium abscessus M94]
gi|382945655|gb|EIC69948.1| rhomboid family protein [Mycobacterium abscessus M94]
Length = 247
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + F N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWFSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 187
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L+GAK N LI G +WRL T FLH HL VN + IG +EKI G R+ +Y
Sbjct: 46 LILFGAKFNPLIVMGDWWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHLAKVI 272
S +A + S+ F +S + GAS +IFGL FA +M G +E + +I
Sbjct: 106 LLSGVAGNVASFAFSDSVSAGASTSIFGL---FATTLMLAETFKGNAYYREIAKTFGILI 162
Query: 273 IFNMAIGLLIKG---IDNWGH 290
+FN G L G +DN GH
Sbjct: 163 VFNFITGFLSIGDGNVDNAGH 183
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL------- 156
+G G ++ H T T T+ R T +L+ VN+LV++ Q + D+
Sbjct: 58 SGTGHAPSASHPRTIAGGTVTTD---PRLLTKLLVGVNLLVFLVQLSLGDRFTDRFDLIG 114
Query: 157 -LWGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
W ++ S + +GQ++RL TS FLH ++ H+ N SL +G +E G RY+
Sbjct: 115 RAWVPELGSTLQGVAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIA 174
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+YF S +A A++Y N ++GASGAIFGL G+ AV + R K +++ +
Sbjct: 175 LYFVSGLAGGALTYLLAAPNQASLGASGAIFGLFGATAVLMRRL-------KYDMRPVVI 227
Query: 271 VIIFNMAIGLLIKGI 285
+++ N+ I GI
Sbjct: 228 LLVINLIITFGWSGI 242
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+++++ + L+ +GAK N I +G +WR T FLH HL
Sbjct: 178 TYVLVVINLIMFLLLELVGSGSTDLSTLIKFGAKYNPAILEGDWWRFITPMFLHIGFLHL 237
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G ++E+I G R+L +YF++ I S+ F + GASGAIFG G+
Sbjct: 238 LMNTLALYYLGISVERIYGTWRFLILYFAAGITGGVASFAFTTQVSAGASGAIFGCFGAL 297
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + H ++ + ++ V+ N+A G L+ +DN H
Sbjct: 298 LYFGVVHPSLF--LRSMGWNIIVVLGINLAFGFLVPMVDNSAH 338
>gi|153808412|ref|ZP_01961080.1| hypothetical protein BACCAC_02706 [Bacteroides caccae ATCC 43185]
gi|149128734|gb|EDM19951.1| peptidase, S54 family [Bacteroides caccae ATCC 43185]
Length = 584
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 13/200 (6%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y + + S+A S Y + + GASGAIFGL G F F++ H K L +
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFHHIPRAQRKALLISILL 303
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+ +N+ G+ GIDN H
Sbjct: 304 FVGYNLVYGMK-AGIDNAAH 322
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 72 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 131
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 132 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 190
>gi|423219507|ref|ZP_17206003.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
gi|392625402|gb|EIY19471.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
Length = 584
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 13/200 (6%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y + + S+A S Y + + GASGAIFGL G F F++ H K L +
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFHHIPRAQRKALLISILL 303
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+ +N+ G+ GIDN H
Sbjct: 304 FVGYNLVYGMK-AGIDNAAH 322
>gi|423216154|ref|ZP_17202679.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691005|gb|EIY84256.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
Length = 584
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNLLVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F F+ HR K L + + +N+ G+ GIDN H
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAH 320
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------------LLLWGAKINSLIDKGQFWRLATSAF 179
T +L+AVNV ++ A A Q + +LWG + + G+F R+ TS F
Sbjct: 86 TYVLIAVNVAIF-AVTAVQSRSVMDNHVASPLFLDWVLWGPAVAA----GEFSRIVTSGF 140
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASG 238
LH + HL VN ++L IG E + G RY VY + + SA P GASG
Sbjct: 141 LHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSASVLMLDPLVPTAGASG 200
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFGL+G+ AV ++R K + VI N+ I + I GI WGH
Sbjct: 201 AIFGLLGAQAVILLRL-------KRSPTPVLAVIAINVIISITIPGISLWGH 245
>gi|332880624|ref|ZP_08448298.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357046009|ref|ZP_09107639.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
gi|332681612|gb|EGJ54535.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531015|gb|EHH00418.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
Length = 476
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL +N LV++A F LL WGA L G +WR+ T ++H +
Sbjct: 59 TPLLLDLNFLVFLAMCLSGVGIFFPDNVDLLHWGADFAPLTLTGDYWRVLTCNYVHVGLI 118
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
HL +N Y+L IG +E + G RR Y S + +S S A GASGAIFGL
Sbjct: 119 HLAMNMYALLFIGLFLEPLAGSRRMAMAYVLSGLYASLASLSVNAEWIAAGASGAIFGLY 178
Query: 245 GSFAVFIMRHRNILGGGKEE----LQHLAKVIIFNMAIGLLIKGIDNWGH 290
G F +++ R GG+E L +A I++N+ G+ +DN H
Sbjct: 179 GLFFAYLLLRR----GGEERRKTLLISIAVFILYNLLFGMRDDSVDNAAH 224
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N++VY+ + L+ +GAK+N LI +G++WRL T F+H + H++
Sbjct: 10 TYFLIIINIIVYLLMTVAGGSENTNVLVFFGAKVNQLIGQGEWWRLFTPMFIHIGLQHIV 69
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E + G R++ +Y S + + S+ F S + GAS +IFGL G+F
Sbjct: 70 LNMVTLYFIGIQIEAVFGKWRFVILYLISGLGGNIASFVFSPSISAGASTSIFGLFGAFL 129
Query: 249 VFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R ++ AK ++I N+ +G GID GH
Sbjct: 130 MLGESYRQ-----NPYIRATAKQFLILVILNLGLGF--TGIDIAGH 168
>gi|311030831|ref|ZP_07708921.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
sp. m3-13]
Length = 503
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N I +G++WR T LH HL++N ++ +G +E+I G R+L
Sbjct: 204 ETLVKYGAKYNPAILEGEWWRFFTPIVLHIGFLHLLLNTMAIFYLGSAVERIYGNIRFLA 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI----LGGGKEELQHL 268
+Y + S S+ F +S + GASGAIFG G+ + H + +G ++
Sbjct: 264 IYLFAGFTGSLASFVFTSSLSAGASGAIFGCFGALLFVGIIHPKMFFRTMGA------NI 317
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+I N+AIG I GIDN GH
Sbjct: 318 LVLIGINLAIGFTIPGIDNAGH 339
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++NVLV++ Q + +L LW + S
Sbjct: 15 REGARTVRQPRTQ-FGGRQRSATPVVTYTLISLNVLVFVMQVTVMGLERQLALWPPGVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGH 290
I GH
Sbjct: 183 PAISWQGH 190
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 14/133 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWG-------AKINSLIDKGQFWRLATSAFLHA 182
T IL+A+N+ V++A + D+L+ L G A+I + +GQ+WRL TS FLH
Sbjct: 83 TKILVAINIAVWLAALSAGDRLVNDLDLVGRAYDPGAAQIVG-VAEGQWWRLVTSIFLHQ 141
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAI 240
+ H+ N SL IG +E G R++ +Y S + SA+SY N P++GASGAI
Sbjct: 142 QLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSYLLAAQNQPSLGASGAI 201
Query: 241 FGLVGSFAVFIMR 253
FGL+G+ AV + R
Sbjct: 202 FGLLGATAVLMRR 214
>gi|384250516|gb|EIE23995.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 306
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 12/154 (7%)
Query: 136 ILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+LLA+N+ VY A A QD L AK + ++ G+++RL T+ FLH +
Sbjct: 59 LLLAINLGVYGAGLVAGLGPEGADAQQDYFLAL-AKTDVGVEAGEYYRLITANFLHDSFV 117
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +CY+L ++ P +E++ G +L Y S++ S ++ ++ VGAS IFG++G
Sbjct: 118 HLGSSCYALATVAPAIEEVLGWDIFLATYLLSSVGGSVGTFILGDAVTVGASSGIFGVIG 177
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
+ +++++R++ K +L +A V+ N+ +G
Sbjct: 178 ALVAYLLKNRSLERTSK-QLVSIAGVVGVNLVMG 210
>gi|227513507|ref|ZP_03943556.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
gi|227083380|gb|EEI18692.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
Length = 234
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+IFGL G+F + R++ I+ + L I+ N+A + + GID GH
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIAGH 185
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 134 TNILLAVNVLVYIAQFAT--QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY + D L +G N I +GQ+WR T FLH + HL+ N
Sbjct: 18 VSTLIALNLLVYALTWLPLLGDWLYFYGVGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R+ +Y S+ + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKVRFTTIYLSAGLFASAATYFLQPLDYAHVGASGAIFGVFGAFGA 137
Query: 250 FI 251
+
Sbjct: 138 LV 139
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N LI +G++WR T FLH HL++N ++L IG +EKI G R+L
Sbjct: 208 ETLVFFGAKFNPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLF 267
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y + I S+ F +P + GASGAIFG G+ F + + ++
Sbjct: 268 IYLLAGIIGCIASFYF--NPVGLSAGASGAIFGCFGALLYFGYTFPQVF--FRTMGMNIL 323
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
++ N+ +G + GIDN GH
Sbjct: 324 VIVGLNLVLGFTVPGIDNAGH 344
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 137 LLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+A+NVL +I Q ++ +L+LW + + GQ +RL TSAFLH HL++N ++
Sbjct: 67 LIALNVLAFIGQMSSHQLDSELVLW----SPAVADGQLYRLLTSAFLHYGAMHLLLNMWA 122
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L +GP +E + G R+ +Y SA+ S Y N+ GASGAIFGL G A I
Sbjct: 123 LYVVGPPLEGLLGRSRFSALYLLSALGGSVTVYLLAPLNTATAGASGAIFGLFG--ATLI 180
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ R + ++ +A +I+ N+ I I GH
Sbjct: 181 VGRRL-----QMDIGWVAAIIVINLVFTFTIPQISWQGH 214
>gi|319651546|ref|ZP_08005673.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
gi|317396613|gb|EFV77324.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
Length = 506
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I + + V V++ A L+ +GAK N LI G++WR T LH + HL
Sbjct: 181 FTYIFIFIQVAVFLVLEAMGGSTDTSTLIKYGAKFNPLILDGEWWRFLTPIVLHIGLLHL 240
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E++ G R+L +Y ++ + S+ F + + GASGAIFG G+
Sbjct: 241 LMNTLALFYLGSAVERVYGNLRFLFIYLAAGFGGTLASFIFSPTLSAGASGAIFGCFGAL 300
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F + + ++ + ++ V+ N+A G I GIDN GH
Sbjct: 301 LYFGLIYPSLF--FRTIGFNIIVVLGINLAFGFTIPGIDNAGH 341
>gi|449015504|dbj|BAM78906.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 364
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T ++ +N+L Y+A+ A + LL GAKINS I GQ WRL T FLH
Sbjct: 110 TTGIIGINILTYLAELYFEVEGKLSGANSNILLALGAKINSAIAAGQLWRLFTPIFLHGG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL+ N Y+L +I E GP + +Y +S + +SY F +VGAS +IFGL
Sbjct: 170 LLHLLSNTYALYAISYECEMAYGPLAFAVIYLASGAWGNLLSYWFTPYLSVGASSSIFGL 229
Query: 244 VGSFAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLI-KGIDNWGH 290
++ V+++ + ILG + ++ L +++FN A G IDN H
Sbjct: 230 FSAYIVYLVNNYAILGRQARRQITVLVALVVFNFAFGSTPGDAIDNSAH 278
>gi|440784052|ref|ZP_20961473.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
gi|440219088|gb|ELP58303.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
Length = 325
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLIDKGQFWRLATSAFLHANIA 185
T I++ +N+ VY+ L + GAK N LI+ G+++RL T FLH+ I
Sbjct: 141 TYIIIGINIAVYLLSGVLSRNLFNIDINVLDILGAKDNYLINNGEYYRLFTCMFLHSGIL 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ N Y+L SIG E I G ++Y+ +Y S I +S SY F N +VGASGAIFG++G
Sbjct: 201 HIASNMYALYSIGGLAESIYGRKKYIIIYILSGIIASTASYVFSNGISVGASGAIFGVLG 260
Query: 246 SFAVFIMRHR 255
V ++ H+
Sbjct: 261 --GVLVISHK 268
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRL 174
ART L G+ + T L+ +N+LV+ +AQ D + G + S + G++WRL
Sbjct: 59 ARTRLSEGKPYVTYTLIGINILVFLLCVAQAGFGDPGAATIFSSGDLLKSDVAAGEYWRL 118
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV 234
TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A+
Sbjct: 119 LTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIALLGGSAAVMLFENDRAL 178
Query: 235 --GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 179 TAGASGAIYGLMGAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 229
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 21/162 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-------IDKGQFWRLATSA 178
R T ILL + + ++AQ A D+ L+ A + +L + +GQ++RL TS
Sbjct: 83 RLVTKILLGICAVAFLAQQALGDEFTDRFDLIGRALMPALGWDQLQGVAEGQWYRLLTSM 142
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGA 236
FLH +I H++ N SL IG +E G RYL ++F S +A SA++Y N ++GA
Sbjct: 143 FLHGSIIHILSNALSLWWIGGPLEAALGRARYLALFFVSGLAGSALTYLVAEPNQASLGA 202
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAI 278
SGAIFG+ G+ AV + R R +++ + +++ N+ I
Sbjct: 203 SGAIFGVFGAMAVLMRRQRY-------DMRPMIAILVINLII 237
>gi|298245593|ref|ZP_06969399.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
gi|297553074|gb|EFH86939.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
Length = 294
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N +++ + ++WR T FLHAN+ HL +N +L +G +E++ G RYL +
Sbjct: 95 LIDYGAKYNPAIVQQHEYWRFLTPMFLHANLLHLGLNMLNLLMLGIFLERLLGHTRYLFL 154
Query: 214 YFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILG-GGKEELQHLAKV 271
Y + I S S+ F ++GASGAIFGLVG F++F++ HR GG + +L +
Sbjct: 155 YIITGIISILASFYFAPEEVSLGASGAIFGLVGVFSIFVITHRRAFPFGGLFSILYLIVI 214
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I N+ +G +I +DN+ H
Sbjct: 215 IGINLGVGFMIANVDNYAH 233
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 11/134 (8%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WR T FLH +
Sbjct: 184 FTYMLIAVQVVMFLLLELSGGSTNTAT---LTAFGAKNNVLILEGEWWRFVTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +Y S I S S+ F + GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIVAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNIL 258
G+ + +R +
Sbjct: 301 GALLYLAISNRKLF 314
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
Query: 122 TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQF 171
TA NL T +L+ +N+ +++ Q + D LL A + +GQ+
Sbjct: 86 TADPNLV-----TKVLIGLNLALFLVQLSLGDDFTRRFELLGRASYTGFSPLEGVAEGQY 140
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--C 229
+RL T+ FLH AH++ N SL +G +EK G R+L +Y S +A SA+SY
Sbjct: 141 YRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALSYLLAAA 200
Query: 230 NSPAVGASGAIFGLVGSFAVFIMR 253
N P++GASGAIFGL G+ AV + R
Sbjct: 201 NQPSLGASGAIFGLFGATAVLVRR 224
>gi|418423189|ref|ZP_12996358.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
gi|363993164|gb|EHM14390.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
Length = 252
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATLSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 192
>gi|302782513|ref|XP_002973030.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
gi|300159631|gb|EFJ26251.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
Length = 432
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 134 TNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+ + H
Sbjct: 227 VSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHSGLLH 286
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L ++C++ S GP +E + G + +Y + S+ + P VG +GA+F ++ S
Sbjct: 287 LFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAMICS 346
Query: 247 FAVFIMRHRN 256
+ +F+++++
Sbjct: 347 WIIFLVKNKE 356
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD--------KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ILL N+L+++ + +LL WGA S G +WRL +S FLH I
Sbjct: 319 TSILLDFNILIFLLMTFSGVHIISPNGIELLEWGANRRSETTGGDWWRLVSSMFLHGGIM 378
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL +N Y L +E + G +Y +YF+S I S S Y + N+ +VGASGAIFGL
Sbjct: 379 HLFLNIYGLVIAALFVEPVFGRIKYFILYFASGICGSLASIYWYENTISVGASGAIFGLY 438
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ ++ + G L + + N+ +G L GIDN H
Sbjct: 439 GAVLGLLLTNAFPKDGKIGILMFIGPYVGVNLLVG-LTGGIDNAAH 483
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q+WRL T FLHA + H++ N +L IGP E+ G R++LG+Y I + MSY F
Sbjct: 4 QYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFA 63
Query: 230 N-SPAVGASGAIFGLVGSFAVFIM--RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
+ +VGAS A+FG+ G ++ + +H + + + + + ++ N+ G GID
Sbjct: 64 PLTVSVGASSALFGMFGGLILYAVQFKHDSRI---RAQGTMMGLFVVLNLMSGFFSTGID 120
Query: 287 NWGH 290
WGH
Sbjct: 121 MWGH 124
>gi|418251560|ref|ZP_12877691.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|420934166|ref|ZP_15397439.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|420935691|ref|ZP_15398961.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|420944426|ref|ZP_15407681.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|420949678|ref|ZP_15412927.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|420954531|ref|ZP_15417773.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|420958705|ref|ZP_15421939.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
gi|420963609|ref|ZP_15426833.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|420994639|ref|ZP_15457785.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|420995600|ref|ZP_15458743.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|421004948|ref|ZP_15468070.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|353448717|gb|EHB97118.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|392132578|gb|EIU58323.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|392146032|gb|EIU71756.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|392147198|gb|EIU72919.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|392150719|gb|EIU76432.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|392153444|gb|EIU79151.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|392180741|gb|EIV06393.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|392191420|gb|EIV17045.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|392193651|gb|EIV19275.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|392246522|gb|EIV71999.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|392248431|gb|EIV73907.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
Length = 232
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 11 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 70
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 71 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 130
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 131 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 172
>gi|365872871|ref|ZP_09412407.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363992937|gb|EHM14164.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
Length = 252
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 192
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------------IDKGQFWRL 174
R T ILL +NV V++A AT L +N L + +G+++RL
Sbjct: 86 RLITKILLGLNVAVFVAVMATGGAL---SPLVNRLDLVGLAAEPGGYHLVGVAEGEWYRL 142
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSP 232
T+ FLH +AH+ N SL +GP +E G R++ +Y + + SA+SY N P
Sbjct: 143 LTAMFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALSYFLAAQNQP 202
Query: 233 AVGASGAIFGLVGSFAVFIMRHR 255
++GASGAIFGL+G+ AV + R R
Sbjct: 203 SLGASGAIFGLLGATAVLLRRLR 225
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 54 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 113
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 114 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 170
Query: 268 LAKVIIFNMAIGLLIKGIDNWGH 290
A + +FN+ + + +D W H
Sbjct: 171 FAALALFNLISNIGDQSVDIWAH 193
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 16/162 (9%)
Query: 134 TNILLAVNVLVYIAQFATQD--KLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHLMVN 190
T +A++V++++ Q A QD +LL+ +NSL + GQ++RL TS FLH HL+ N
Sbjct: 67 TYTFIAISVVMFVVQLAAQDVERLLV----LNSLAVADGQWYRLLTSTFLHFGPVHLLFN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y + A+ S + Y N+ GASGA+FGL +
Sbjct: 123 MWALYVVGPPLESALGRLRFTALYLAGALGGSVLVYLLAPLNAATAGASGAVFGLFAATL 182
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V I R N+ +++ + +I+ N+ I + GI GH
Sbjct: 183 V-IGRRLNL------DVRWVLALIVINLVITFSVPGISWQGH 217
>gi|302805494|ref|XP_002984498.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
gi|300147886|gb|EFJ14548.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
Length = 459
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 135 NILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+ ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+ + HL
Sbjct: 228 STIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHSGLLHL 287
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++C++ S GP +E + G + +Y + S+ + P VG +GA+F ++ S+
Sbjct: 288 FLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAMICSW 347
Query: 248 AVFIMRHRN 256
+F+++++
Sbjct: 348 IIFLVKNKE 356
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 49 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 108
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 109 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 165
Query: 268 LAKVIIFNMAIGLLIKGIDNWGH 290
A + +FN+ + + +D W H
Sbjct: 166 FAALALFNLISNIGDQSVDIWAH 188
>gi|421036084|ref|ZP_15499101.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
gi|392219936|gb|EIV45460.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
Length = 252
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 192
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 75 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 134
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 135 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 193
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T ILL +NV V+IA A D L L+ GA + +G+++RL T+ FL
Sbjct: 89 RLVTKILLGINVAVFIAVLAVGDGLVQDLELIGGAFTREDLQFIGVAEGEWYRLLTAVFL 148
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H++ N SL +GP +E G R+L +Y S + SA+SY N P++GASG
Sbjct: 149 HQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALSYLLAAQNQPSLGASG 208
Query: 239 AIFGLVGSFAVFIMRHRN 256
AIFGL+G+ V +MR N
Sbjct: 209 AIFGLLGA-TVILMRRLN 225
>gi|414584256|ref|ZP_11441396.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|420881430|ref|ZP_15344797.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|420884483|ref|ZP_15347843.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|420887277|ref|ZP_15350635.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|420896232|ref|ZP_15359571.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|420901413|ref|ZP_15364744.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|420907312|ref|ZP_15370630.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|420974770|ref|ZP_15437960.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|421052000|ref|ZP_15514994.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392080246|gb|EIU06072.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|392086339|gb|EIU12164.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|392093991|gb|EIU19787.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|392095544|gb|EIU21339.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|392098774|gb|EIU24568.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|392105216|gb|EIU31002.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|392119408|gb|EIU45176.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|392159888|gb|EIU85581.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|392240603|gb|EIV66096.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898]
Length = 247
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 187
>gi|420912660|ref|ZP_15375972.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|420919114|ref|ZP_15382417.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|420924284|ref|ZP_15387580.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|420929944|ref|ZP_15393223.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|420969638|ref|ZP_15432841.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
gi|420980281|ref|ZP_15443458.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|420985667|ref|ZP_15448834.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|421009768|ref|ZP_15472877.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|421010496|ref|ZP_15473600.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|421020930|ref|ZP_15483986.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|421025708|ref|ZP_15488751.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|421031230|ref|ZP_15494260.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392112005|gb|EIU37775.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|392114654|gb|EIU40423.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|392126932|gb|EIU52683.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|392128937|gb|EIU54687.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|392164559|gb|EIU90248.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|392170663|gb|EIU96341.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|392195374|gb|EIV20993.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|392206653|gb|EIV32236.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|392209231|gb|EIV34803.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|392216607|gb|EIV42150.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|392219112|gb|EIV44637.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392245294|gb|EIV70772.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
Length = 247
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 187
>gi|397678270|ref|YP_006519805.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
gi|395456535|gb|AFN62198.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
Length = 287
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 186 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 227
>gi|420866475|ref|ZP_15329864.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|420871266|ref|ZP_15334648.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|420875716|ref|ZP_15339092.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|420988850|ref|ZP_15452006.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|421040347|ref|ZP_15503355.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|421046065|ref|ZP_15509065.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
gi|392065191|gb|EIT91040.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|392067191|gb|EIT93039.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|392070736|gb|EIT96583.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|392183129|gb|EIV08780.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|392221275|gb|EIV46798.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|392235518|gb|EIV61016.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
Length = 247
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 187
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 20/158 (12%)
Query: 116 GTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKI 162
GT H +A T I R T IL+ +NV +Y+ Q + D L+ A
Sbjct: 62 GTGHAPSATTPRTIAGGTIAADPRLLTKILIGLNVALYLLQLSIGDDFTQRFELVGRASY 121
Query: 163 NSL-----IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
L + +GQ++RL TS FLH ++ H++ N SL +G +E G RYL +Y S
Sbjct: 122 EYLGPVEGVAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYLVS 181
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMR 253
+A SA++Y +P++GASGAIFGL G+ AV + R
Sbjct: 182 GLAGSALTYLLEAPTTPSLGASGAIFGLFGATAVLMRR 219
>gi|419710435|ref|ZP_14237901.1| rhomboid family protein [Mycobacterium abscessus M93]
gi|382941267|gb|EIC65587.1| rhomboid family protein [Mycobacterium abscessus M93]
Length = 247
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAEGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 187
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV + V++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTISVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLL--WGAKINSL-IDKGQFWRLATSAFLHANI 184
T ILLA + +VY+ + D +L GA L + KG++WRL T+ FLH +
Sbjct: 11 TYILLASSSVVYLFSALLSQSLSDMDMQVLVDMGALFGPLTVLKGEWWRLLTAMFLHGGM 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
HL++N +SL +G E + YL +YF S I +S Y S VGASGAIFG+
Sbjct: 71 THLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGGLVSLYIHPVSVGVGASGAIFGV 130
Query: 244 VGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ A F + HR I K ++ + +I N+ IG I ID H
Sbjct: 131 FGALAGFFLAHREKIASHTKAFMKDFSIIIAINLVIGFSIPSIDVSAH 178
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A NVL+++A L L WGA G++WRL ++ FLH I
Sbjct: 18 TPLLIAANVLIFVAMLLNGASLWHAQNTIQLAWGANFGPATQDGEWWRLGSALFLHFGIL 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL++N +L +G +E++ G R+ +Y ++ + + +S AV GASGAIFG+
Sbjct: 78 HLLLNMAALWDVGQWVERMYGTLRFAVIYLTAGLTGNLLSLVANAGAAVSGGASGAIFGI 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKV------IIFNMAIGLLIKGIDNWGH 290
G+ ++ R+ + G+ A + IIF GLL+ GIDN H
Sbjct: 138 YGALLSYLWLERSSIHRGEFRWLFWAAIGFSGATIIF----GLLVPGIDNAAH 186
>gi|381182764|ref|ZP_09891551.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
gi|380317332|gb|EIA20664.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
Length = 516
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR + FLH + H+ NC + +GP EKI G RY+ +
Sbjct: 210 LVEYGAKFNPLIYQGEWWRFISPIFLHTGLMHIAANCLMIYIVGPWAEKIYGRWRYIVIL 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
IA + S+ + AVG+S A+F L G+ ++ ++ K +A +++
Sbjct: 270 LVGGIAGNIASFALNTNVAVGSSTAVFALFGALLYLVVLKPHLY--AKTIGSSIAALVVI 327
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + GID GH
Sbjct: 328 NLIIDIFAVGIDLAGH 343
>gi|167763036|ref|ZP_02435163.1| hypothetical protein BACSTE_01401 [Bacteroides stercoris ATCC
43183]
gi|167699376|gb|EDS15955.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 771
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 130 GRQWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +N+ +++ T ++ WGA L G +WR T F+H
Sbjct: 349 GNMATPLLVYINIALFVVMSICGVSLLAPTGISIIKWGADFGPLTLTGDWWRTITCNFIH 408
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS----SAIASSAMSYRFCNSPAVGAS 237
+ H+++N Y+L IG +E++ G RR + YF SA+AS AM + + GAS
Sbjct: 409 IGVIHVLMNMYALLYIGIFLEQLIGGRRLISAYFLTGLFSALASLAMHPE---TISAGAS 465
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGH 290
G+IFGL G F +++ H I G ++ L + + + +N+ G +GIDN H
Sbjct: 466 GSIFGLYGIFLSYLVFHHRIEKGQRKSLLYSIGFFVFYNLMSGARAEGIDNAAH 519
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
RQ ++ ++ ++ +A + Q LL+GA+ L+D+G++WR+ T+ F+H
Sbjct: 12 RQLYMYIIMIDSIILLAFYVVQTFFVSEPYAYLLFGAQYGPLVDQGEWWRIVTAMFMHGG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL N Y+L +G E I G R+L + + IA + ++ F +S +VGASGAIFG
Sbjct: 72 FLHLAFNMYALYILGSYAEGIYGTYRFLSYFILTGIAGNIATHFFYHDSLSVGASGAIFG 131
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGH 290
LVG+ R L +II N+A+G + GI+N H
Sbjct: 132 LVGALFAAGFRKDTPFFLKPITGSALLPMIILNVALGFIPGSGINNAAH 180
>gi|269124334|ref|YP_003297704.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
gi|268309292|gb|ACY95666.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
Length = 302
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL-----IDKGQFWRLATSAFLHAN-- 183
T L+A+NVLVY+AQ ++ + G + + + G+++RL T+AFLH+
Sbjct: 77 TYTLIALNVLVYLAQLSSSRIVYDFAMVGVRFDPYGEMHGVADGEWYRLITAAFLHSQPG 136
Query: 184 -----IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGAS 237
+ H++ N ++L IGP +E++ G R+ +Y SA+ S + Y AVGAS
Sbjct: 137 GGSFGVTHILFNMWALWVIGPQLEQVLGRWRFTSLYLLSALGGSVLLYLVDPTGAAVGAS 196
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GAIFGL G+F V R GG + +++ N+ I + GI GH
Sbjct: 197 GAIFGLFGAFFVIAKRLNAPAGG-------IVFLLVLNLVITFTVPGISWEGH 242
>gi|169627133|ref|YP_001700782.1| rhomboid family protein [Mycobacterium abscessus ATCC 19977]
gi|169239100|emb|CAM60128.1| Rhomboid family protein [Mycobacterium abscessus]
Length = 287
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V +R R Q + V++ N+ + + + GI GH
Sbjct: 186 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGH 227
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 134 TNILLAVNVLVY-IAQFATQDKLLLWGAKINSLI-----------DKGQFWRLATSAFLH 181
T ++AVNV+V+ + D + G + + + D G +WRL TSAFLH
Sbjct: 73 TMAIIAVNVVVFALTDIVGTDAITAAGRMVGADVIDTQGRLWPGMDDGGYWRLLTSAFLH 132
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
A + HL+ N Y+L GP +E+ G RY+ Y + A+ S A+ Y + + VGASGA
Sbjct: 133 AGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSGAVVYLLTDPRTFTVGASGA 192
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+FGL G V ++R K++++ L ++ N I L
Sbjct: 193 VFGLFGYALVLLVR-------AKQDVRTLLVLLAVNGVISL 226
>gi|365902867|ref|ZP_09440690.1| membrane-associated serine protease [Lactobacillus malefermentans
KCTC 3548]
Length = 226
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 135 NILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
I++ V +L+ + +T +L+ +GAK++SLI GQ+WRL T FLH H+++N +
Sbjct: 20 GIMVIVFLLMTVMGGSTNTYVLIQFGAKVSSLIQAGQWWRLFTPVFLHIGFEHILLNGIT 79
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVF-- 250
L +G +E+I G RY ++ +AI + S+ F NS + GAS AIFGL G+F +
Sbjct: 80 LYFLGLQIERIFGHWRYFIIFVVTAIGGNLASFVFSPNSLSAGASTAIFGLFGAFLMLGE 139
Query: 251 -IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + A I+ N+ LL GID GH
Sbjct: 140 SFWENPYI----RQMTKTFALFIVLNLGFDLLSPGIDLSGH 176
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGH 290
I GH
Sbjct: 183 PAISWQGH 190
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 23/166 (13%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG----------QFWRLATSAFLHANIAH 186
L+AVN++++ A A + AK +S+++ G ++WRL TS FLH+++ H
Sbjct: 30 LIAVNLVLFAAAMAQS----VGNAKASSIMNDGALYSNRHLVFEYWRLLTSGFLHSSVPH 85
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLV 244
L +N SL +G +E++ GP RYL +Y S SA F PA VGASGAI+GL+
Sbjct: 86 LALNMISLYIVGRELERLFGPARYLTIYLMSLFGGSAAVLLFQQGPAPTVGASGAIYGLM 145
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V ++R K + VI N+ + + I GI W H
Sbjct: 146 GALLVVVLRL-------KLPATSVLVVIGLNIVMSISIPGISLWAH 184
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I L +N+ I + + +GAK N I G++WR T FLHA++ HL N SL
Sbjct: 192 IWLVMNIYARIKNIDVSNLFIPFGAKENFSIMSGEYWRFITPIFLHADLEHLFANSLSLF 251
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH- 254
G +E + G +++ +Y ++ + + S+ F VGASG+IFG G+ + +
Sbjct: 252 VFGRIVEGMYGHKKFTFIYLAAGVIGNVASFMFSTYSGVGASGSIFGFFGALLYLWVENP 311
Query: 255 ---RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
R G ++ +I+ N+A G GIDN+ H
Sbjct: 312 AAFRRYFG------NNILIMIVINLAYGFASPGIDNFAH 344
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 50 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 108
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 109 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 164
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 165 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 217
Query: 283 KGIDNWGH 290
I GH
Sbjct: 218 PAISWQGH 225
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 134 TNILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+ +L+ +NV++++ FA + L +GA LI +G+ WRL FLH + HL+
Sbjct: 35 SYVLIGINVVMFLLTAFAGGSTDPEVLTAFGACNRKLIAQGELWRLVVPMFLHIGVIHLV 94
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 95 ANMYALWVVGPQLESLYGSARFTILYVLSGIGGFVASYFFAHPESIGAGASGALFGMFGA 154
Query: 247 FAVFIMRHRN 256
VF+ ++R+
Sbjct: 155 LLVFVYKYRS 164
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKIN-----SLIDKGQFWRLATSAFL 180
R T +L+ VN+ +++ Q + D+ LL A I + +GQ++RL T+ FL
Sbjct: 84 RLVTKVLIGVNLALFLVQLSVGDRFTQRFELLGQAYITFPGPVEGVAEGQWYRLLTAMFL 143
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H++ N SL +G +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 144 HTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGSALTYLIAEPNQPSLGASG 203
Query: 239 AIFGLVGSFAVFIMR 253
AIFGL G+ A + R
Sbjct: 204 AIFGLFGATATLVRR 218
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 9/146 (6%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +LL G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +
Sbjct: 52 SIQSSILL-GGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTK 110
Query: 210 YLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEE 264
YL +Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +
Sbjct: 111 YLLIYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQ 167
Query: 265 LQHLAKVIIFNMAIGLLIKGIDNWGH 290
L A + +FN+ + + +D W H
Sbjct: 168 LVVFAALALFNLISNIGDQSVDIWAH 193
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGH 290
I GH
Sbjct: 183 PAISWQGH 190
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY+ + + + +G N I +GQ+WR T FLH+ + HL+ N
Sbjct: 18 VSTLIALNLLVYVLTWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R++ +Y + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKIRFITIYLLAGFFASAATYFLQPLDYSHVGASGAIFGVFGAFGA 137
Query: 250 FI 251
+
Sbjct: 138 LV 139
>gi|312137531|ref|YP_004004867.1| serine peptidase [Rhodococcus equi 103S]
gi|311886870|emb|CBH46178.1| putative serine peptidase [Rhodococcus equi 103S]
Length = 321
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 34/182 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------------------WGAKINSLIDKGQF 171
T +L+A+NVL++ A A Q K L+ W +S + +G+
Sbjct: 86 TYVLIALNVLIF-AITALQAKSLMDNGGGVVNRFTGVATFDSPLFGWMVLDSSAVAQGEL 144
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
+R+ S FLH + HL VN ++L +G E + G RYL VY S + SA + F S
Sbjct: 145 FRVIGSGFLHFGLIHLAVNMFALWVLGRDTEIVLGRSRYLAVYLISLLGGSASALMF-ES 203
Query: 232 P---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
P GASGAIFG++G+ AV ++R R + VI N+ I L + GI W
Sbjct: 204 PFAFTAGASGAIFGIMGAQAVLLLRMR-------RSATPVLTVIGINVVISLTVPGISLW 256
Query: 289 GH 290
GH
Sbjct: 257 GH 258
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 13 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 71
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 72 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 127
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 128 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 180
Query: 283 KGIDNWGH 290
I GH
Sbjct: 181 PAISWQGH 188
>gi|410455491|ref|ZP_11309370.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
gi|409929185|gb|EKN66272.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
Length = 519
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYI-AQF--- 149
+FA S + +K S + T R L G+ + T + +A+ +V+ +F
Sbjct: 145 SFAEDYSEQDVEAIKKESLDFANKKVKTERAILSNGKPFFTYVFIAIQAIVFFWLEFHGG 204
Query: 150 -ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+ +GAK+N LI G++WR T FLH HL +N +L +G T+EKI G
Sbjct: 205 STNTSTLIKYGAKVNQLILGGEWWRFITPIFLHIGFVHLAMNTLALYFLGTTVEKIFGSV 264
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
R+L +Y + + S+ F ++ + GASGAI+G G+ F
Sbjct: 265 RFLLIYLFAGVMGVIASFIFSSTLSAGASGAIYGCFGALLYF 306
>gi|413925970|gb|AFW65902.1| hypothetical protein ZEAMMB73_057038 [Zea mays]
Length = 503
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 10/186 (5%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKINSL 165
+ S LD + G TN+L VN+ V + + A+ K LL+GAKIN+L
Sbjct: 246 DEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNL 305
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WRL T LH+ H+ + C++L GP + + G R + +Y I + S
Sbjct: 306 ILSGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSS 365
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG- 284
+ V +G +F L+G++ V+ +++ ++ E VI ++ L I G
Sbjct: 366 FVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGR 425
Query: 285 IDNWGH 290
IDNW H
Sbjct: 426 IDNWAH 431
>gi|227524649|ref|ZP_03954698.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
gi|227088133|gb|EEI23445.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
Length = 234
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+IFGL G+F + R++ I+ + L I+ N+A + + GID H
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIASH 185
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 24/157 (15%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
+ K ++WRL T+AFLH ++ H+ N Y+L +G +E I G RYL ++F+ AI +
Sbjct: 216 DIAQKHEYWRLVTAAFLHGSVLHIAFNMYALFLLGTQLEAILGRVRYLALFFACAIGGNT 275
Query: 224 MSYRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+SY + A GAS AIFG FA + + R + + + V+ N+ I
Sbjct: 276 LSYVIHDEKAFSYGASTAIFGF---FAAYYLIARRL----RVNTNQILIVVGINLLITFS 328
Query: 282 IKGIDNWGH---------------DMPGRRVPLQLLG 303
I GID WGH +P RRV +Q LG
Sbjct: 329 ISGIDKWGHIGGLATGVVLGLLYAYVPARRVAIQALG 365
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------KGQFWRLATSAFLHAN 183
T IL+ +N+ V++A T D+L+ + D +GQ++RL T+AFLH
Sbjct: 81 TKILIGLNIAVWLAVLGTGDRLVDGFDLVGRAYDPGTADIVGVAEGQWYRLLTAAFLHQQ 140
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
H+ N SL IG +E G RYL +Y S + SA+SY N P++GASGA+F
Sbjct: 141 PLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGSALSYLLAAQNQPSLGASGAVF 200
Query: 242 GLVGSFAVFIMR 253
GL+G+ AV + R
Sbjct: 201 GLLGATAVLMRR 212
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+N+++++ F T LL WG ++ + G+ +RL +S F+H N H+++N
Sbjct: 162 LIAINIIIWLFMFLIINAFTNRSLLDWGGLVHFNVVHGEIYRLISSMFIHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAV 249
SL G +E I G + LG+YF S I + +S NS +VGASGAIFGL+GS FA+
Sbjct: 222 LSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVSLALDTNSISVGASGAIFGLIGSLFAI 281
Query: 250 FIMRHR 255
+ +
Sbjct: 282 MYLSKQ 287
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T +L+ + + V++AQ + D L+ A + L D +GQ++RL TS FL
Sbjct: 100 RLVTKVLIGICLAVFLAQLSMGDPFTDRFDLMGRAYVPELGDVEGVAEGQWYRLLTSMFL 159
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASG 238
H + H++ N SL IG +E G RY+ +Y S +A SA++Y N P++GASG
Sbjct: 160 HGSYIHILFNMLSLWWIGGPLEAALGRVRYIALYLVSGLAGSALTYLIAAANQPSLGASG 219
Query: 239 AIFGLVGSFAVFIMR 253
AIFGL G+ AV + R
Sbjct: 220 AIFGLFGATAVLMRR 234
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-Y 226
KG++WRL T+ FLH + H+++N SL IG ME + YL +Y S + +S Y
Sbjct: 20 KGEWWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGLVSLY 79
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGI 285
S +GASGAIFG+ G+ A F + HR LG K ++ +I+ N+ IG I +
Sbjct: 80 IHPASVGIGASGAIFGVFGALAGFFIAHRKHLGKHTKAFMKEFTVIIVINLVIGFSIPNV 139
Query: 286 DNWGH 290
D H
Sbjct: 140 DVSAH 144
>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa]
gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 137 LLAVNVLVYI---------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L ++N+ V++ ++FA LL+GAKIN LI G++WRL T FLH+ H+
Sbjct: 253 LASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEWWRLVTPMFLHSGAFHV 312
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ +SL + GP + + G + +Y I+ + S+ P VG +G +F ++G++
Sbjct: 313 VLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAW 372
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK---GIDNWGH 290
++ ++++++ K++ + + + A+ ++ ID+W H
Sbjct: 373 LIYQNQNKDVI--SKDDFDRMFQKAVITTAVSFILSHFGPIDDWTH 416
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 176
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 176
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NVLV+I + L+ +GAK+N+LI GQ+WRL T FLH H++
Sbjct: 8 TYTLLGINVLVFILMTLAGGSQSVGVLVEFGAKVNTLIVAGQWWRLITPMFLHIGFEHIV 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L VY S IA + S+ F ++ + GAS A+FGL G +
Sbjct: 68 LNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNLASFAFNPDALSAGASTALFGLFGIY 127
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ VLVY A +T +LL GA+ SLI +G++WRL + FLH ++HL+
Sbjct: 12 TLILIVFQVLVYCWLVYAGGSTNTVILLKMGARSTSLIREGEWWRLVSPVFLHVGLSHLV 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
VN +L IG +E+ G R + +YF SAI + S F + + GAS AIFGL G+F
Sbjct: 72 VNSVTLLYIGRYIEEFFGHWRMVVIYFISAIFGNLASAVFMPLTISAGASTAIFGLFGAF 131
Query: 248 AVF-IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + HRNI+ + + +I N+ + + G+D GH
Sbjct: 132 LMLGVCFHRNIV--VRVLSRTFLLFVIINIVMDFFLPGVDLVGH 173
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+ +NV ++I T L+ WGA L G +WR T F+H I
Sbjct: 540 TPLLIYINVALFIVMSICGVSLIEPTGISLMKWGADFGPLTLTGDWWRTVTCNFIHIGII 599
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR-FCNSPAVGASGAIFGLV 244
HL++N Y+L IG +E+I G R+ + Y + + S+ S + + GASG+IFGL
Sbjct: 600 HLLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFSALASLTAHPETISAGASGSIFGLY 659
Query: 245 GSF-AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLG 303
G F + I H+ K L + +I+N+ +G +GIDN H G V +LG
Sbjct: 660 GIFLSYLIFNHKIEKHQRKSLLFSIGFFVIYNLLLGTKEEGIDNAAH--IGGLVSGVILG 717
Query: 304 IT 305
IT
Sbjct: 718 IT 719
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 23/188 (12%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+ +N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLILLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGH 290
I GH
Sbjct: 183 PAISWQGH 190
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPIFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 176
>gi|331701529|ref|YP_004398488.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128872|gb|AEB73425.1| Peptidase S54, rhomboid domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 220
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ +
Sbjct: 36 TLVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVI 95
Query: 214 YFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAK 270
+F S I + S+ F +S + GAS AIFGL G+F + ++ I+ K L
Sbjct: 96 FFVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAFMMLGESFSKNPAIVSMAKTFLLF--- 152
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
II N+ + + GID GH
Sbjct: 153 -IILNIGTDIFVSGIDIAGH 171
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 17/169 (10%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINS--LIDKGQFWRLATSAFLHANIAH 186
T L+ + V++++A +F+ + L+ +GA + LI+K ++WRL T FLH H
Sbjct: 17 TYCLIGITVIIFLAMEFSGGSENSRVLIQFGALVRPYILINK-EYWRLFTPIFLHIGWMH 75
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N +L IG +E+I G RYLG+Y S IA + +S+ F NS + GAS A+FGL
Sbjct: 76 LILNMVTLYYIGEQIERIYGHWRYLGIYLLSGIAGNVLSFSFGSLNSISAGASTALFGLF 135
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+F + +N IL E ++ I+ N+ L +D GH
Sbjct: 136 GAFVILGKHFKNNPAIL----EMVRQYTIFIMINLIFNLFSSSVDIMGH 180
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 134 TNILLAVNVLVYI--AQFATQD------------KLLLWGAKINSLIDKGQFWRLATSAF 179
T I+L +N+ +YI A F+ Q L+ +GAK + L+ +G++WRL T+ F
Sbjct: 57 TTIILLMNIGLYIVTAVFSLQSGNSDAFFNLDGRTLIAFGAKFDPLLAQGEWWRLVTAGF 116
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LH + H+ +N ++L +G +E+ G R +YF + + S + + +VGAS
Sbjct: 117 LHGGMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATVTGFYASAVWSPALSVGASAG 176
Query: 240 IFGLVGSFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKG-IDNWGH 290
IFGL+G+ F +RH G + + A + N+ G+L G IDN H
Sbjct: 177 IFGLLGAMIAFGVRHHGFTGDAFRSQYMFWAGL---NLLFGILGSGRIDNAAH 226
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N ++ IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+F V + RH +Q + I+ N+ L +D GH
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGH 182
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+NV++++ Q + Q L+L + + G ++RL TSAFLH IAHL+ N
Sbjct: 77 TYTLIAINVVMFVLQTVSPNLQSDLVLRSPSVAT----GDWYRLVTSAFLHYGIAHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
Y+L +GP++E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 133 MYALYIMGPSLESWLGRLRFSALYAMSALGGSVLVYLLSPLNAATAGASGAVFGLFG--A 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
F++ R L +Q + +I+ N+A +I +
Sbjct: 191 AFVIGKRLNL-----NVQWVVGLIVLNLAFTFVIPAL 222
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 19/158 (12%)
Query: 115 EGTSHL-DTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA--- 160
GT H D +R G R T IL+AVN+ V+IA ++Q + L L G+
Sbjct: 58 SGTGHAPDASRPRTIAGGSIAADPRLVTKILVAVNLAVFIAVQSSQSLRNDLYLIGSWPP 117
Query: 161 ---KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+ + +G++WRL TS F H + H N SL +G +E G RYL +YF S
Sbjct: 118 APFQPTQGVAEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPLEAALGRARYLALYFCS 177
Query: 218 AIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMR 253
+A SA +Y + + ++GASGAIFGL G+ AV + R
Sbjct: 178 GLAGSAFTYLLADPHTASLGASGAIFGLFGATAVLLRR 215
>gi|163790986|ref|ZP_02185408.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
gi|159873725|gb|EDP67807.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
Length = 235
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T + LA+ +L ++ T D LL +GAK N I G++WRL T FLH H
Sbjct: 19 TYLFLAIQILAFVLM--TLDGGSTNMVTLLKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 77 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 136
Query: 247 FAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGID 286
+ ++ +Q +AK +II N+ G+ ID
Sbjct: 137 TIMLGQTFKH-----NPAIQQMAKSFGTLIIINIIFGVFSSSID 175
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 134 TNILLAVNVLVYIA-------QFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T +LAV +LV+IA Q A + L+ +GAK I Q+WRL T FLHA
Sbjct: 15 TMSILAVTILVFIAEGLFSGGQTANGEFLVSFGAKWGPYIHHYDQYWRLLTPVFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+ N +L IGP E+ G ++LG+YF I + MSY F + +VGAS A+F +
Sbjct: 75 HIATNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGNIMSYLFAPLTISVGASTALFAMF 134
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ ++ + I + + + ++ N+ G ID WGH
Sbjct: 135 GGLILYAVQFKEDPRI----RSQGTIMILFVVLNLVTGFASTDIDMWGH 179
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+ +N++V+ +A+ + L+ G+ + ++ +G++WRL T+ FLH ++ H
Sbjct: 80 TYALIVINLIVFGLCVAEAGITNPGNAALMSDGSLVKGIVGEGEYWRLLTAGFLHFSVMH 139
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ VN SL IG +E+ G RYL VY S + SA M + N GASGAI+GL+
Sbjct: 140 VAVNMISLYIIGRDLERALGTYRYLAVYLISLLGGSAAVMLFEADNVQTAGASGAIYGLI 199
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V +++ R + +I FN+ + + + GI H
Sbjct: 200 GAMLVIVLKAR-------VPATPVLVIIGFNVVLSVSLPGISLMAH 238
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+ +NV+++ Q + D +L+L+ + + G+++RL TSAFLH + H++ N
Sbjct: 72 TYVLIGINVVMFGLQTVSVDLQRELVLF----SPAVADGEWYRLLTSAFLHYGVTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFA 248
++L +GP +E G R++G+YF+SA+ S + Y + + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYLLSSLGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
F++ R L +++ + +I NMA +I
Sbjct: 186 TFVVGKRLNL-----DVRWVIGLIALNMAFTFVI 214
>gi|163815124|ref|ZP_02206505.1| hypothetical protein COPEUT_01280 [Coprococcus eutactus ATCC 27759]
gi|158449533|gb|EDP26528.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 333
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T I L +N+LVY+A L + ++ +K Q++R TS F H I HL+ N
Sbjct: 148 TPIFLLMNILVYLACVYIYQPTEL-AVNVYAISEKRQYYRFLTSMFTHFGITHLLGNMVI 206
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSP---AVGASGAIFGLVGSFA 248
L ++G +E I G Y+ VY + +A++ SY FCN + GASGAIFGL+G
Sbjct: 207 LIALGARIENIIGRLNYVIVYIVTGLAAAFASYINFFCNDIYDYSAGASGAIFGLLGVLV 266
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAI--GLLIKGIDNWGH 290
V ++ G ++L + +I+F + + GL+ +GIDN H
Sbjct: 267 VIAFYNK----GRVKDLSLMNMIILFILTLVDGLMSEGIDNVAH 306
>gi|319937466|ref|ZP_08011871.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
gi|319807306|gb|EFW03915.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
Length = 213
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 33/179 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG---------------QFWRLATSA 178
T++L+A+ V++Y+ F LL+G ++N + +G +++RL T+
Sbjct: 15 TSVLIALCVVIYVISF------LLYGEEMN--VYEGMAFGGYNPVFVQLNHEYYRLITAN 66
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------CNS 231
F+H I H+ VNCYSL IG +E P++Y V F SA+A++ + Y N+
Sbjct: 67 FIHFGIIHIAVNCYSLYGIGMFIESSLKPKKYCIVLFISALATTGLPYLLYLINGFEANT 126
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ G SG IFGL+G+ +++R+I + + LA ++ + I +++ I GH
Sbjct: 127 VSGGISGVIFGLIGALGALALKYRDIF---LDVFRQLAPNLLLMLFISVVVPSISLSGH 182
>gi|442323116|ref|YP_007363137.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
gi|441490758|gb|AGC47453.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
Length = 518
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
+L+ ++ L++ D L+ WGAK L+ + GQ WRL T+ LH ++ HL++N
Sbjct: 10 AGVLVGLHGLLWSQGPVDVDALVRWGAKAGPLVLEAGQVWRLLTANLLHRDVLHLLLNVT 69
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
L + G +E++C YL + A+ + A S + + +VGASG ++G +G+ V
Sbjct: 70 VLVAAGSALERVCRRSDYLAFLVTVALTTMASSLAWSGAVSVGASGLVYGCLGALLVLGR 129
Query: 253 RHRNI-----LGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
RHR++ L G L V++F + +G G+DN
Sbjct: 130 RHRSLFRVRWLSGES----ALPTVLVF-LWMGWTSVGVDN 164
>gi|406027090|ref|YP_006725922.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
gi|405125579|gb|AFS00340.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
Length = 220
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ +
Sbjct: 36 TLVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVI 95
Query: 214 YFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAK 270
+F S I + S+ F +S + GAS AIFGL G+F + ++ I+ K L
Sbjct: 96 FFVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAFMMLGESFSKNPAIVSMAKTFLLF--- 152
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ N+ + + GID GH
Sbjct: 153 -IVLNIGTDIFVSGIDIAGH 171
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 16/161 (9%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TYALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
V + R N+ +++ +A +II N+ + I G
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLVFTFVYPLISGQG 228
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLIFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + + N+ + GID WGH
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+L+ + +++Y+ F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 166 NVLIWLIMILYLNHFSDV-KLLDLGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 224
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
G +E I GP R LG+Y S + + +S F ++ +VGASGAIFGL+GS
Sbjct: 225 FIFGKIVESIVGPLRMLGIYVISGLLGNFISLSFNLHTVSVGASGAIFGLIGS 277
>gi|326692732|ref|ZP_08229737.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINS--LIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ V V++ Q A L+ GAK ID Q+WRL T FLHA H++ N +L
Sbjct: 25 MFVVEVIMGHGQIANGQLLVTLGAKWGPGIAIDH-QYWRLLTPIFLHAGWLHIITNMLTL 83
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMR 253
IGP E + G R++LG+Y + + MSY F + +VGAS A+FGL G +F +
Sbjct: 84 WFIGPLAEAVFGHRKFLGLYLFGGVVGNIMSYLFAPLTVSVGASTALFGLFGGLLMFASQ 143
Query: 254 HR---NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
R IL GK L + N+ +G G+D W
Sbjct: 144 FRHDPEILAQGKTLLLFVG----LNLVMGFGANGVDMW 177
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T+I+LAVNVL+ I F +Q L + +GA+ L+ G+++RL T+ F+H +
Sbjct: 7 THIILAVNVLIAIVMFFAGNLSAFRSQTYLFIRFGAQYGPLVSDGEWYRLITAIFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGL 243
HL+ N Y+L G +E + GP +++ Y ++ + + ++ F + +VGASG+IFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGNIATHLFYYRAISVGASGSIFGL 126
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGH 290
VG R + L +I+FN+ G + GI+N H
Sbjct: 127 VGILFSLGFRRDTPFFMKQFTGYALLPMILFNIIYGFIPGSGINNAAH 174
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLVFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + + N+ + GID WGH
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I +D Q++RL T+AFLHA
Sbjct: 134 TQILIGLCVVAYILQGAPGLAGGDTSNRFTDDFAMIGFRIA--VDD-QYYRLLTAAFLHA 190
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 191 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 250
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F ++ V R R + Q + V+ N+ I ID WGH
Sbjct: 251 FAFFSAYYVIARRLR-------VDSQQILIVLGINLLITFSFSSIDKWGH 293
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 137 LLAVNVLVYI---AQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNVLV++ AQ D L G + S + G++WRL T+ FLH ++ H+ V
Sbjct: 74 LIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKSDVASGEYWRLLTAGFLHFSVMHIAV 133
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF 247
N SL +G +E G RYL +Y + + SA F AV GASGAI+GL+G+
Sbjct: 134 NMLSLYILGRDLELALGMFRYLAIYLIALLGGSAAVMLFEADRAVTAGASGAIYGLMGAM 193
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V I++ R + +I FN+ + + GI GH
Sbjct: 194 LVIILKAR-------VSPVPVLSIIAFNVVLSFSLPGISVLGH 229
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+ +NV+V++A A L WGA GQ+WRL ++ F+H +
Sbjct: 27 TAGLMVLNVMVFLAIALAGGGWWHAVNGVQLDWGANFAPATQDGQWWRLLSAMFIHFGVW 86
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL VN ++L IG +E + G R+ +Y + + + +S + AV GASGA+FGL
Sbjct: 87 HLAVNMWALWDIGRLLETLLGRWRFAALYLGAGVCGNLLSLVVQGNRAVSGGASGAVFGL 146
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKV--IIFNMAIGLLIKGIDNWGH 290
G+ VF+ R + G+ + + +A+G + GIDN H
Sbjct: 147 YGALLVFLWVERKQVEAGEFRWLFGGALGFSVLMLALGWFMPGIDNAAH 195
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 15/148 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW + +L D +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLQIAGGDLESRLTLWPPAL-ALHD--EYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
V + RH N+ +++ + +++ N+
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINL 177
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG IN I +GQ+WRL TS FLHA + H++ N ++L GP +E++ G +++ Y +
Sbjct: 47 WGMGINFAISQGQYWRLITSIFLHAGLMHVLFNSFALVLFGPALEQMLGKVKFITAYLGA 106
Query: 218 AIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ + + F PA VGASGAI+GL G +A + ++++ ++ + +++
Sbjct: 107 GLIGNLAT--FLLGPALYSHVGASGAIYGLFGIYAFMVAFRKHLIDPSSSQI--ITIILV 162
Query: 274 FNMAIGLLIKGIDNWGH 290
+ + + GI+ + H
Sbjct: 163 IGLIMTFVRSGINIYAH 179
>gi|113969173|ref|YP_732966.1| rhomboid family protein [Shewanella sp. MR-4]
gi|113883857|gb|ABI37909.1| Rhomboid family protein [Shewanella sp. MR-4]
Length = 520
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYLCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +LA + ++ +GL G+DN H
Sbjct: 451 GVLIIWIWLGLLPLADNMPLALNLALFVSASLVMGLF-GGVDNAAH 495
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q++R +AFLH N H++VN Y+L +G +E + G R +G++ + A+ + +SY
Sbjct: 42 QYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLFLAGAVGGNVLSYVVN 101
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+ ++GAS AIFG G+F V R R + + +I+ N AI + ID
Sbjct: 102 GLETSSLGASTAIFGFFGAFYVIARRMR-------ADTTQILILIVLNFAITFSLSSIDR 154
Query: 288 WGH 290
WGH
Sbjct: 155 WGH 157
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 137 LLAVNVLVYIAQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+ +N++VY+ + +GA N LI G++WRL T+ F+H H++ N + L
Sbjct: 21 LILINLIVYVIGLVPRINSYIFNYGAAANWLIGAGEYWRLVTAIFIHGGFLHILSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ ++ S I + +Y + +VGASGA+FG++G++ +
Sbjct: 81 YVFGPELEKIAGRARFIFIFLMSGIIGNVATYFVQDLGYVSVGASGAVFGMLGAYLALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
R+I + Q + ++I ++ I L ++ H
Sbjct: 141 YTRHIF---PQLRQMILPLVIISVIITFLQPNVNATAH 175
>gi|24372586|ref|NP_716628.1| rhomboid protease [Shewanella oneidensis MR-1]
gi|24346607|gb|AAN54073.1| rhomboid protease [Shewanella oneidensis MR-1]
Length = 528
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 129 IGRQWTNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFL 180
+G T ILL VL+++ FA+ LL WGA + L+ Q WRL ++ FL
Sbjct: 332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
H + HL+ N Y L G +E + G R LGVY S +A+S S + + ++GASGA
Sbjct: 392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
I GL G ++I L HL + ++ +GLL G+DN H
Sbjct: 452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAH 501
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 16/161 (9%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TFALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
V + R N+ +++ +A +II N+ + I G
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLVFTFVYPLISGQG 228
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 131 RQWTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R T+ L+ +NVL++I + F+ +L+GA++ +LI G+++RL TS F+H
Sbjct: 3 RNVTSYLIMLNVLIFIMMFLFGGLSAFSNPRIYILFGAQLGNLITAGEWFRLITSMFVHG 62
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ N +L +G +E+ G R++ +Y S I + +++ F N+ +VGASGAIF
Sbjct: 63 GLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLPNAISVGASGAIF 122
Query: 242 GLVG 245
GL+G
Sbjct: 123 GLIG 126
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-------QDKLLL-WGAK 161
+N+ E S L+ R G T +L+++N V+I + Q LLL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHLLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+ M + + K +Q L V+I + + L + I+ H
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAH 318
>gi|302531387|ref|ZP_07283729.1| predicted protein [Streptomyces sp. AA4]
gi|302440282|gb|EFL12098.1| predicted protein [Streptomyces sp. AA4]
Length = 320
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGA-KINSL--------IDKGQFWRLATSAFLHANI 184
T L+AVNV +++ L GA +I L + G++WR+ TS FLH
Sbjct: 88 TATLIAVNVAIFLITVVQAKSLFDNGAARIEMLGELWTYPALGGGEWWRIFTSGFLHYGP 147
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFG 242
H+ N +SL +G +E++ G R+L +YF S +S F N P+ GASGAIFG
Sbjct: 148 IHIAANAFSLWMMGRALEQVFGKSRFLALYFVSMFGASTAVLLFDAPNRPSAGASGAIFG 207
Query: 243 LVGSFAVFIMRHR 255
L+GS+AV +++ R
Sbjct: 208 LLGSYAVIVLKLR 220
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+ M + + K +Q L V+I + + L + I+ H
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAH 318
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+ M + + K +Q L V+I + + L + I+ H
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAH 318
>gi|14520881|ref|NP_126356.1| hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
gi|5458098|emb|CAB49587.1| Membrane protein, rhomboid protein homolog [Pyrococcus abyssi GE5]
gi|380741425|tpe|CCE70059.1| TPA: hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
Length = 212
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I+ AV + I F D+ +L A+IN L+ +GQ+WRL T+ FLH H +N + L
Sbjct: 34 IITAVFIYEVIVGF---DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLF 90
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
+G +E I G +R+L V+F+SA+A + +S F P + GASG +FG+VG+
Sbjct: 91 YLGTDLEGIVGTKRFLIVFFASALAGNVLSL-FTLDPRIASGGASGGLFGIVGA 143
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 138 LAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSI 197
L + +L+ QF LL +G +N LI +G++WRL T FLHA AH + N +SL
Sbjct: 26 LLLWILIDFLQFGFALDLLRFGIGVNVLILEGEYWRLVTPIFLHAGFAHALFNSFSLVLF 85
Query: 198 GPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMR 253
GP +E+I G +++ +Y + I + ++ N A +GASGAIFG+ G + ++
Sbjct: 86 GPALEQILGKFKFIFMYLFAGIVGNLGTF-IVNPDAYYQHLGASGAIFGIFGVYVFMVLF 144
Query: 254 HRNILGGGKEEL 265
++++ ++
Sbjct: 145 RKHLIDQANSQI 156
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 18/149 (12%)
Query: 134 TNILLAVNVLVYIAQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T L+AVNVLV++ Q T++ +L A + G+F+RL TSAFLH + H++
Sbjct: 39 TYTLIAVNVLVFLLQAVLPGFTREFVLQPYA-----VADGEFYRLLTSAFLHYGLTHILF 93
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N ++L +GP +E G R++G+Y SA+ S + Y N+ GASGAIFGL G
Sbjct: 94 NMWALYVVGPALEAALGRLRFVGLYALSALGGSVLVYLLSAPNAATAGASGAIFGLFG-- 151
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNM 276
A F++ R +++ +A +I+ N+
Sbjct: 152 ATFVVGKRL-----NMDVRWVAAIIVINL 175
>gi|111020678|ref|YP_703650.1| rhomboid family protein [Rhodococcus jostii RHA1]
gi|110820208|gb|ABG95492.1| possible rhomboid family protein [Rhodococcus jostii RHA1]
Length = 305
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGH 243
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
T L+A N+LV++ L WGA G++WRL T+ FLH
Sbjct: 25 TKCLIAANLLVFVLMLFNGAGFWHSPNNVQLQLAWGANFGPATQDGEWWRLFTALFLHFG 84
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
HL +N + G +E++ G RYL +Y S + + +S + + AV GASGAIF
Sbjct: 85 AVHLALNMIAFWDGGQLVERMYGHWRYLVIYLVSGLVGNLLSLVWQGNQAVSGGASGAIF 144
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHL-AKVIIF---NMAIGLLIKGIDNWGH 290
G+ G+ VF+ + R +L + E + L +F +A+G +I IDN H
Sbjct: 145 GIYGALIVFLWQERALL--DRREFRWLFGGACVFATATIALGFMIPAIDNAAH 195
>gi|384107096|ref|ZP_10007998.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
gi|383833031|gb|EID72500.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGH 243
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ VN+ V+I D L+ +GA + L+ GQ+WR+ T+AF+H H++
Sbjct: 14 TTALMLVNIAVFIIMTLHGGSEDIDNLVRFGAMVKPLVKLGQWWRIFTAAFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N Y L SIGP EK+ G R +L +Y + I + +Y F N+ + GAS +++G+ G
Sbjct: 74 FNMYFLYSIGPLFEKLYGSRNFLIIYLLAGIMGNLFTYAFASNNTVSAGASTSLYGIFG- 132
Query: 247 FAVFIM---RHRNILGG-GKEELQHLAKVIIFNM 276
A+ +M R +IL G G L +A +++++
Sbjct: 133 LAIGLMINYRDDDILRGLGASFLSIIAINVVYSL 166
>gi|259503580|ref|ZP_05746482.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168453|gb|EEW52948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 219
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSA 178
+T+L+ T +L+A+ ++VY+ T L+ +GA + + G++WRL T
Sbjct: 2 KTSLWKDNPVTVVLIAIQLVVYLLMTLAGGSTTPAVLIRFGALQAAAVQAGEWWRLLTPV 61
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGAS 237
F+H AHL++N +L IG +E++ G R L +Y SAI + +S Y + GAS
Sbjct: 62 FVHIGFAHLLINSITLYFIGMYIEQLFGHWRMLVIYLGSAIVGNLLSAYWLPAGISAGAS 121
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
IFGL G+F + R + L+ L++ +++ N+A L++ GID GH
Sbjct: 122 TGIFGLFGAFIMLGATFRE-----NQALRMLSRQFLILVVLNIATDLMVPGIDLAGH 173
>gi|419967548|ref|ZP_14483436.1| rhomboid family protein [Rhodococcus opacus M213]
gi|424859689|ref|ZP_18283671.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|356661133|gb|EHI41465.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|414567056|gb|EKT77861.1| rhomboid family protein [Rhodococcus opacus M213]
Length = 305
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGH 243
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 16/162 (9%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+++N LV++ Q + +L LW + S GQ +RL TSAFLH HL++N
Sbjct: 3 TYTLISLNALVFVMQVTVMGLERQLALWPPAVAS----GQTYRLVTSAFLHYGAMHLLLN 58
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 59 MWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFG--A 116
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F++ R L +++ + +I+ N+A L I GH
Sbjct: 117 TFMVARRLHL-----DVRWVVALIVINLAFTFLAPAISWQGH 153
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 23/170 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I + Q++RL T+AFLHA
Sbjct: 45 TQILIGLCVVAYILQGAPGLAGGDNSNRFTDDFAMIGFRIAA---DDQYYRLLTAAFLHA 101
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 102 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 161
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F ++ V R R + + + V+ N+ I ID WGH
Sbjct: 162 FAFFAAYYVIARRLR-------VDSRQILVVLGINLLITFSFSNIDKWGH 204
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLTAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR-------ASPVPVLLIIGFNVVLSFSLPGISVLGH 176
>gi|397733720|ref|ZP_10500434.1| rhomboid family protein [Rhodococcus sp. JVH1]
gi|396930518|gb|EJI97713.1| rhomboid family protein [Rhodococcus sp. JVH1]
Length = 305
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGH 243
>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]
Length = 477
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++C++L + G + + GP + +Y ++ + S+ P VG +G +F ++G++
Sbjct: 292 ALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTGPVFAMIGAW 351
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL--IKGIDNWGH 290
+ ++++++ + L K ++ + +L I ID W H
Sbjct: 352 LSYQFQNKDVMTKDVSDKMFL-KALVAAVISSILSNIGPIDEWTH 395
>gi|432333562|ref|ZP_19585328.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
gi|430779509|gb|ELB94666.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
Length = 249
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 28 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 86
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 87 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 146
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 147 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGH 187
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 15/148 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW +L +++RL TS FLH HL+ N
Sbjct: 86 TYTLIAVNVLMFVLQIAGGDLESRLTLWP---PALALHDEYYRLVTSMFLHYGAMHLLFN 142
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 143 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 202
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
V + RH N+ +++ + +++ N+
Sbjct: 203 V-VARHLNL------DVRAIGVIVVINL 223
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 24/168 (14%)
Query: 136 ILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+L+ + V+ YI + Q+ L+ +GAK N I +G++WR +S FLH HL
Sbjct: 189 LLIMIAVMFYIVE---QNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGFIHLF 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E++ G R++ +YF + + S S+ F A GASGAIFGL G+
Sbjct: 246 MNSLALFYLGGAVERMYGTSRFVLIYFIAGLIGSISSFAFNEQVAAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEEL------QHLAKVIIFNMAIGLLIKGIDNWGH 290
F G + +L ++ ++ N+ G ++ IDN H
Sbjct: 306 YF--------GTAQPKLFFRTMGMNVLVILGINLVFGFVMPMIDNGAH 345
>gi|268637931|ref|XP_002649151.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|256012943|gb|EEU04099.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 489
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GAK + LI G++WR T FLH I H ++N + +G +E+ G R + +Y
Sbjct: 277 LLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIY 336
Query: 215 FSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+A + S NS VGASGAIFG +G ++R+ ++L L II
Sbjct: 337 LLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSVLAKPWLNFGSLLFSII 396
Query: 274 FNMAIGLLIKGIDNWGH 290
+ A+GL + G+DN+ H
Sbjct: 397 TSFAVGLFLPGVDNFAH 413
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ L+ GQ++R+ T+ F+H HL+ N Y+L +G +E + G ++L YF
Sbjct: 35 LLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYF 94
Query: 216 SSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
S+ I + A + + NS +VGASGAIFGLVG
Sbjct: 95 STGIIGNLATQFFYYNSFSVGASGAIFGLVG 125
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY+ + + + +G N I +GQ+WR T FLH + HL+ N
Sbjct: 18 VSTLIALNLLVYVLMWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R+ +Y + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKVRFTTIYLLAGFFASAATYFLQPLDYFHVGASGAIFGVFGAFGA 137
Query: 250 FI 251
+
Sbjct: 138 LV 139
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN LL +N LV++ Q + ++ D G+++RL T+ LH HL N +
Sbjct: 80 TNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYRLVTAVMLHGGWGHLAGNSMA 139
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIM 252
L +IG E G +++ +Y S ++ + +S +P++GASGAIFGL+G+ A M
Sbjct: 140 LFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLTPSLGASGAIFGLLGAEA---M 196
Query: 253 RHRNILGGGKEEL----QHLAKVIIFNMAIGLLIKGIDNWGH 290
H L G K + + + F + +GLL+ ID+WGH
Sbjct: 197 IH---LAGPKASMPLFVSSVGQTAFFAVLVGLLVPNIDHWGH 235
>gi|88800271|ref|ZP_01115838.1| hypothetical protein MED297_14685 [Reinekea blandensis MED297]
gi|88776986|gb|EAR08194.1| hypothetical protein MED297_14685 [Reinekea sp. MED297]
Length = 209
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 130 GRQWTNILLAVNVLVYIA---------QFATQDKLLLW-GAKINSLIDKGQFWRLATSAF 179
G + + +L+ + LV++A Q++ Q L W GA + +D GQ+WRL TS F
Sbjct: 9 GYKISPLLVLIYGLVFVAMSIMNLSFTQYSIQS--LYWLGANFSPWVDAGQWWRLGTSIF 66
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASG 238
+H + HL+ N S +G +E + G ++ V+ ++ + +S SY F + GASG
Sbjct: 67 VHFGLMHLVFNSVSTLFLGRFLEPLLGHVAFIVVFLTTGLCASMASYVFNKEVYSAGASG 126
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+FGL G F V ++ + E L+ + +++ N+ +GL++ +DN H
Sbjct: 127 AVFGLFGLFIVLVLSNLVRPEVRNEWLKSIGVILVINLGMGLVLP-VDNAAH 177
>gi|242061182|ref|XP_002451880.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
gi|241931711|gb|EES04856.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
Length = 328
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 108 TRKNSGHEG-TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LL 157
R N+G + S LD + G TN+L A+N+ V + + A+ K LL
Sbjct: 137 VRGNTGIKSYQSLLDMHTDDQASGFYLTNLLAAINIAVLLFEIASPVKSSENEYLSLPLL 196
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+GAKIN+LI G++WRL T LH+ H+ + C++L GP + + G + +Y
Sbjct: 197 YGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLLFGPRVCRAYGQMTFFLIYILG 256
Query: 218 AIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I + S+ V +G +F L+G++ V+ +++ ++ E VI ++
Sbjct: 257 GICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQSQNKQVIDKDVSESMFWQAVIAAALS 316
Query: 278 IGLLIKG-IDNW 288
L I G IDNW
Sbjct: 317 FLLSIFGRIDNW 328
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|407641198|ref|YP_006804957.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
gi|407304082|gb|AFT97982.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
Length = 235
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 134 TNILLAVNVLVYIAQFA---------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+AVNV ++ A D L W ++ D GQ+WR+ S FLH
Sbjct: 21 TYALIAVNVAIFAVTAAQAQSLLENRASDLFLRWVLYPPAVAD-GQWWRVLGSGFLHYGP 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
HL++N ++L IG E + G RYL VY S + +A F +S GASGA++GL
Sbjct: 80 IHLLLNMFALYVIGRDAELVLGRLRYLSVYLVSLLGGAAAVMVFAQDSATAGASGAVYGL 139
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V ++R R + + +I N+ I + GI WGH
Sbjct: 140 FGAITVILIRLR-------QNPNQMLILIAINVFISFSLPGISLWGH 179
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWG 159
G GT H TA I R T IL+ +N+ V++ Q + D+ LL
Sbjct: 57 GGSGTGHAPTATQPRTIAGGTVAADPRLITKILIGLNLAVFLVQLSVGDRFTERFELLGR 116
Query: 160 AKINSL-----IDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A + L + +GQ +RL T+ FLH + H++ N SL IG +E G RYL
Sbjct: 117 AYVPLLGSLQGVAEGQSYRLLTAMFLHDPHSYVHILFNMLSLWWIGGPLEAALGRIRYLT 176
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
+YF S +A S ++Y N P++GASGAIFGL G+ AV + R
Sbjct: 177 LYFVSGLAGSGLTYLIAAPNQPSLGASGAIFGLFGATAVLMRR 219
>gi|373464451|ref|ZP_09555990.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
gi|371762653|gb|EHO51182.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
Length = 220
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 137 LLAVNVLVYIAQFA---TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V+V++ T D L+ +GAK N I G++WRL T F+H H+++N
Sbjct: 14 LLAIMVIVFLTMTVMGGTTDPGTLVRFGAKYNPAIRAGEYWRLITPMFIHIGFTHILMNG 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L IG +E++ G R+L ++ S I + S+ F GAS AIFGL G+F +
Sbjct: 74 ITLYFIGEYVEQLFGHWRFLTIFLVSGIVGNLASFVFSYGLTAGASTAIFGLFGAFMMLG 133
Query: 252 MRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGH 290
+ +AK I+ N+ + ++GID GH
Sbjct: 134 ESFSK-----NPVITSMAKTFLLFIVLNIGTDIFVQGIDIAGH 171
>gi|168053660|ref|XP_001779253.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669352|gb|EDQ55941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 137 LLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+A+NV VY+ A+ ++ L+GAK+N LI G++WRL T FLH+ HL
Sbjct: 1 LVALNVAVYLFGLASPQEVPGMVDASLPYLYGAKVNELIVNGEWWRLITPTFLHSGFLHL 60
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ ++L GP + G + +Y + + +S+ VG SG IF L+ ++
Sbjct: 61 GLSTWALLEFGPAVGSAFGTLGFSAIYLLGGLYGNLLSFFHTPQGTVGGSGPIFALMAAW 120
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG--IDNWGH 290
V+I+R+R+I+G + + KV+IF L +D+W H
Sbjct: 121 VVYILRNRDIIGLDVAG-EIIRKVVIFTAITYALCNSFPVDDWTH 164
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + +G++WRL T FLH +I HL+ N ++L GP +E++ G ++L VY S
Sbjct: 45 GVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSG 104
Query: 219 IASSAMSYRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ +Y +GASGAIFGL G F ++ ++++ +L + +II
Sbjct: 105 FIANVATYYLGGLAYPYHLGASGAIFGLFGIFVYMVIYRKDLIDPANTQL--VITIIIIG 162
Query: 276 MAIGLLIKGIDNWGH 290
+ + L I+ + H
Sbjct: 163 LVMTFLSSNINVFAH 177
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFLHAN 183
T IL+ + Y+ Q A D L+ A + D +GQ +RL TS FLH +
Sbjct: 85 TKILIGACLAAYLVQMAVGDSFTDNFSLIGQAYVPHFGDVEGVAEGQSYRLLTSMFLHGS 144
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ HL+ N SL +G +E G RYL +YF S +A SA++Y N+ +GASGAIF
Sbjct: 145 VIHLLFNMLSLWWLGGPLEAALGRARYLALYFVSGLAGSALAYLLAEPNTATLGASGAIF 204
Query: 242 GLVGSFAVFIMR 253
GL G+ AV + R
Sbjct: 205 GLFGATAVLMRR 216
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 2 ATTRLSAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 61
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 62 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 121
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 122 LTAGASGAIYGLMGAMLVVILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 173
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
A + L+ GA S + G+ WRL T+ FLH HL +N +L GP +E+ GP R
Sbjct: 46 ADPELLVRLGALERSRVWAGEPWRLVTAGFLHGGWHHLAMNLGALLLAGPIVERGLGPAR 105
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
+LG+Y +S + +SA S ++ GASG +FG+VG+ V +RH
Sbjct: 106 FLGLYLASVVGASAASLLAHDAVVAGASGGVFGVVGALLVLELRH 150
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 6/166 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T FIG ++L VL + L+ WG K N LI G++WRL T FLH
Sbjct: 185 TYTFIGL----LVLMFLVLTFTGGSTNSFNLIKWGGKFNPLIYAGEWWRLITPMFLHNGW 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ N L +GP EKI G R+ + A + S+ N +VGAS ++F +
Sbjct: 241 MHIAANAVMLYIVGPWAEKIYGKWRFALILLIGGFAGNLASFVLNNHLSVGASTSVFAVF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ ++ N+ K ++A +++ N+ IGL ID GH
Sbjct: 301 GALLYLVVLKPNLY--AKTIGTNVATLVVVNILIGLFSAEIDMMGH 344
>gi|347534329|ref|YP_004840999.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504385|gb|AEN99067.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 223
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+ +GA+ N LI GQ WRL T F+H HL++N L +G +EK G R
Sbjct: 33 SNNNVLIEFGAEYNPLIKAGQIWRLITPIFIHIGYQHLILNMIVLYFLGSIIEKFYGHFR 92
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
YL ++ S I + S+ F N + G+S +IFGL G++ V + +N
Sbjct: 93 YLIIFLVSGIVGNLFSFAFENGISAGSSTSIFGLFGAYFVLYLNLKN 139
>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 282 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 341
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 342 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 401
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + +++++++ E + H A + +I ID+W H
Sbjct: 402 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTH 447
>gi|312870529|ref|ZP_07730647.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
gi|311093926|gb|EFQ52252.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
Length = 215
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V++Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVTLVAIQVIIYLLMTLAGGSTNPAVLLRFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLIIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ R + L+ L++ +++ N+ L++ GID GH
Sbjct: 128 IMLGASFRE-----NQALRMLSRQFLILVVLNIVTDLMVPGIDLAGH 169
>gi|226362918|ref|YP_002780698.1| rhomboid family protein [Rhodococcus opacus B4]
gi|226241405|dbj|BAH51753.1| rhomboid family protein [Rhodococcus opacus B4]
Length = 306
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 85 TYILMAANVGIFLITAAQSRSIMQNQAGSTLFADWALFPPAVVD-GQLVRVIGSGFLHFG 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
+ HL VN ++L IG E + G RY VYF+S + SA F ++ GASGA+FG
Sbjct: 144 LIHLAVNMFALWIIGRDTELVLGRARYACVYFASILGGSAAVMLFQLHAVTAGASGAVFG 203
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 204 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGH 244
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I G++WRL T LH+ +H++ N +SL GP +E+I G ++++ +YFSS I
Sbjct: 47 AGVNLYIAAGEYWRLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNIL 258
A++ + F P VG+SGAIFGL G + I+ +++L
Sbjct: 107 AANIAT--FLIKPLTFIHVGSSGAIFGLFGFYIAIILFKKHLL 147
>gi|328957643|ref|YP_004375029.1| membrane endopeptidase [Carnobacterium sp. 17-4]
gi|328673967|gb|AEB30013.1| membrane endopeptidase [Carnobacterium sp. 17-4]
Length = 229
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T LL + +L ++ T D L+ +GAK N I G++WRL T FLH H
Sbjct: 13 TYALLIIQILAFVLM--TLDGGSTNVATLIKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 70
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 71 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 130
Query: 247 FAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGID 286
+ ++ +Q +AK +II N+ G+ ID
Sbjct: 131 TIMLGQTFKH-----NPAIQQMAKSFGTLIIINIVFGIFSSSID 169
>gi|406670924|ref|ZP_11078169.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
gi|405582440|gb|EKB56446.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
Length = 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 24/169 (14%)
Query: 137 LLAVNVLVY---IAQFATQ---DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMV 189
LL +NV+VY + +F + D L+ GAK N ++ Q++RL T +F+H HL
Sbjct: 16 LLLINVIVYAYMLIRFGSSTSFDALIATGAKSNFHIVAYHQWYRLITPSFIHIGFEHLFF 75
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
NC +L IG +E + G R+ ++F ++ + S+ + + GAS IFGL ++ +
Sbjct: 76 NCLTLYFIGQDLEALMGHWRFACLFFVASFGGNLFSFALNMNVSAGASTGIFGLFVAYVI 135
Query: 250 --------FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F ++ R I + A +I+ N+ G + GIDNWGH
Sbjct: 136 LAKMYPHSFALQQRAI---------NFALLIVLNIVTGFMSTGIDNWGH 175
>gi|374313630|ref|YP_005060060.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358755640|gb|AEU39030.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 225
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANI 184
T L+A+NVLV+ A A T + WG L + Q+WRL TS FLH I
Sbjct: 24 TYALIAINVLVFAAMVASGVSFTEPTALDVANWGGDFGPLTVGAHQWWRLLTSCFLHFGI 83
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
H+ N Y L IGP +E G RYL +YF + + S +S + GASGAIFGL
Sbjct: 84 IHIGFNMYVLFQIGPFIEMAFGRIRYLLIYFFAGLGGSLVSVWVHPMVVGAGASGAIFGL 143
Query: 244 VGSFAVFIMRHRNILGGG--KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ F++R+R L K + +++N+ G + + D H
Sbjct: 144 YGAVFGFLLRNRRSLDPAVTKSIAKSAGIFVLYNVVYGSITRTTDLSAH 192
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++ + VLV+IA LL +GA+ L+ GQ+WRL TSAF+H I HL+
Sbjct: 11 TITIIVIRVLVFIAMELNGGSTNTVTLLNFGAEYTPLLVAGQWWRLITSAFVHIGIMHLL 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N L +G +E++ G + + +Y S I+ + +S S A G+S IFGL G+F
Sbjct: 71 LNSIVLYYMGNYIEQLFGHWKLILIYIISVISGNLLSAALSPTSIAAGSSTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
HR + L+ L + ++I N+ L+ ID WGH
Sbjct: 131 IFLGAEHRQ-----QSFLRILTRQYIILMIINLVFDLMSPSIDIWGH 172
>gi|218190628|gb|EEC73055.1| hypothetical protein OsI_07010 [Oryza sativa Indica Group]
Length = 483
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
TN+L A+N+ V + + A+ + L++GAKIN LI G++WRL T LH+
Sbjct: 252 TNLLAAINIAVMLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHSGF 311
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+ L GP + + G +L +Y + + SY + V +G +F L+
Sbjct: 312 LHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYLHTSELTVCGTGPVFALI 371
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG-IDNWGH 290
G++ V+ ++++ + E V+ ++ L G IDNW H
Sbjct: 372 GAWLVYQSQNKDAIDKNVSETMFSQAVVATTLSFLLSSFGRIDNWTH 418
>gi|114048685|ref|YP_739235.1| rhomboid family protein [Shewanella sp. MR-7]
gi|113890127|gb|ABI44178.1| Rhomboid family protein [Shewanella sp. MR-7]
Length = 520
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYVCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +L + ++ +GL G+DN H
Sbjct: 451 GVLIIWIWLGLLPLADNMPLALNLTLFVSASLVMGLF-GGVDNAAH 495
>gi|375092943|ref|ZP_09739208.1| putative membrane protein [Saccharomonospora marina XMU15]
gi|374653676|gb|EHR48509.1| putative membrane protein [Saccharomonospora marina XMU15]
Length = 309
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 28/173 (16%)
Query: 134 TNILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLH 181
T +L+A+N+LVY+ QD + +LW I + ++WRL TS FLH
Sbjct: 95 TPVLIALNLLVYVLTAVQAQDFMRNDVSRLFNDGVLWPVGIAA---ADEWWRLVTSGFLH 151
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
+ H+ +N +L +G +E + G R+L VYF S + SA + F N+ GASGA
Sbjct: 152 FGLLHIGMNMLALWILGRDLELLLGKVRFLAVYFVSMLGGSAAVFAFGAVNTGTAGASGA 211
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAK--VIIFNMAIGLLIKGIDNWGH 290
I+GL+G+ V ++R R L A +I+ N+ + + I GI GH
Sbjct: 212 IYGLMGAILVAVLRLR---------LNPTAAIGIIVLNVVLTISIPGISLLGH 255
>gi|297205734|ref|ZP_06923129.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
gi|297148860|gb|EFH29158.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
Length = 229
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 21/173 (12%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHAN 183
TN + +V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH
Sbjct: 12 TNAMTNTIFVVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
+ HL+VNC +L +G +E + G R+L +Y + + + M+ F + AV GAS A+F
Sbjct: 72 LLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLAFGSDNAVSAGASTALF 131
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
GL G+ + +R E + +L + + + N+ + + ID WGH
Sbjct: 132 GLFGAMIALGIANRT-----HEGMAYLGRQSFVLAVINLLFDINVPQIDTWGH 179
>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]
Length = 486
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + +++++++ E + H A + +I ID+W H
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTH 410
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 105 GGGTRKNSGHEGTSH-LDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDKLL 156
GG + G T H + AR G R T IL+ +N+ V+ A D+ +
Sbjct: 47 GGAQGSSGGRVPTGHPVRDARPRTIAGGALTADPRLVTKILIGLNLAVWFVALAIGDRFV 106
Query: 157 ----LWGAKINSL------IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206
L G + + +GQ++RL T+ FLH H+ N SL +G +E G
Sbjct: 107 NALDLVGRAYDPTAAGLVGVAEGQWYRLVTAMFLHQQAYHIAFNMLSLWWLGGPLEAALG 166
Query: 207 PRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
RYL VY + + SA+SY N P++GASGAIFGL+G+ AV + R
Sbjct: 167 RARYLAVYLLAGLGGSALSYLLAAQNQPSLGASGAIFGLLGATAVLMRR 215
>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa]
gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++DK Q WRL T +LHA I HL+ N SL IG +E+ G R VY S S +
Sbjct: 113 VVDKHQGWRLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVL 172
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 173 SSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALLTLLVIIVINLAIGIL-P 231
Query: 284 GIDNWGH 290
+DN+ H
Sbjct: 232 HVDNFAH 238
>gi|294497058|ref|YP_003560758.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
gi|294346995|gb|ADE67324.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
Length = 200
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI 154
>gi|238922477|ref|YP_002935990.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
gi|238874149|gb|ACR73856.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
Length = 192
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I GQ+WRL TS F+H + H++ N L ++G +EK G + L + S
Sbjct: 32 GAMYPEYIKDGQYWRLFTSMFMHFGLMHILNNMVVLGAVGQIVEKAMGHVKLLITFLVSG 91
Query: 219 IASSAMSY---RFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ S +SY + N AV GASGAIFGLVG+ ++ +R G + ++I
Sbjct: 92 MCGSVLSYIVMLYNNDYAVSAGASGAIFGLVGALVWIVIANRGFYEGVSR--KQAVFMVI 149
Query: 274 FNMAIGLLIKGIDNWGH 290
+ G+ +G+DNW H
Sbjct: 150 LMIYYGVSTQGVDNWAH 166
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 21/171 (12%)
Query: 134 TNILLAVNVLV-----YIAQFATQDKLLLWGAKINSLIDKG------QFWRLATSAFLHA 182
T +L+ +N+LV Y+ Q ++ L ++ G +++RL ++ F+H
Sbjct: 94 TKVLIGINLLVFLFTQYVDQSWQKNPLGMYSWAPAPWERHGVAEGPLEWYRLVSAQFVHG 153
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAI 240
+ H+ N +SL +GP +E++ G RYL +Y S IA +A+ Y + AVGASGAI
Sbjct: 154 GLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGNALGYLLTGADMWAVGASGAI 213
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GH 290
FGL+G+ AV R +Q + +++ N+ + + + +W GH
Sbjct: 214 FGLLGATAVLFRVTRT-------PMQPVIALLVVNLVMTFSLHSVIDWRGH 257
>gi|388508254|gb|AFK42193.1| unknown [Lotus japonicus]
Length = 199
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I HL ++C++L S GP + K G + +Y ++ + S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG---I 285
PAVG +G +F ++G++ ++ +++R+++ E +II A+G ++ I
Sbjct: 63 TPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIII--TALGFILSSPGPI 120
Query: 286 DNWGH 290
D W H
Sbjct: 121 DEWSH 125
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|384049179|ref|YP_005497196.1| hypothetical protein BMWSH_5009 [Bacillus megaterium WSH-002]
gi|345446870|gb|AEN91887.1| Conserved membrane protein YdcA [Bacillus megaterium WSH-002]
Length = 200
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSKSNQQI 154
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 158 WGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA + L+ + ++WR FLH H+++N +L IG +E I G RYLG+Y
Sbjct: 26 WGAMVRPLVAQNHEYWRFINPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLL 85
Query: 217 SAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
S IA + S+ F NS + GAS A+FGL G+F V + RH +Q + I+
Sbjct: 86 SGIAGNIASFAFGTPNSVSAGASTALFGLFGAF-VILGRHFRDNPAIMYMVQRYSMFIVI 144
Query: 275 NMAIGLLIKGIDNWGH 290
N+ L +D GH
Sbjct: 145 NLLFNLFSSSVDMMGH 160
>gi|160878203|ref|YP_001557171.1| rhomboid family protein [Clostridium phytofermentans ISDg]
gi|160426869|gb|ABX40432.1| Rhomboid family protein [Clostridium phytofermentans ISDg]
Length = 396
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 16/168 (9%)
Query: 134 TNILLAVNVLV--YIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVN 190
T +L+A+N +V Y +K++ G LI +++RL T FLHANI+HL+ N
Sbjct: 209 TLVLIALNAVVFFYTDLSGNYNKIISEGCIFWPLIKFNNEYYRLLTYQFLHANISHLVNN 268
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCN---SPAVGASGAIFGLVG 245
L +G T+E+ G +YL +YF S I + ++MSY S ++GASGA+FG++G
Sbjct: 269 MLILAIMGSTLERHVGKFKYLLIYFLSGIVAGIASMSYNMWKGLFSNSIGASGAVFGVIG 328
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF---NMAIGLLIKGIDNWGH 290
+ A+ ++ ++ G+ E ++IIF ++ G +G+DN H
Sbjct: 329 AIALIVVVNK-----GRLETIGTRQIIIFIALSLYGGFTSQGVDNAAH 371
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 40/199 (20%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ + ++ Y+ Q T D L+ G KI +L D ++WRL T+AFLH
Sbjct: 188 TKILIGLCLVAYVLQGVPGLTGTSRINQFTIDYSLI-GVKI-ALDD--EYWRLVTAAFLH 243
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGA 239
++ H++ N Y+L +G +E + G RYL ++F+ AI + +SY + GAS A
Sbjct: 244 GSVLHILFNMYALFLLGTQLEAVLGRARYLALFFACAIGGNTLSYLMSGERTFSYGASTA 303
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHD-------- 291
IFG FA + + R + + + V+ N+ I I GID WGH
Sbjct: 304 IFGF---FAAYYLIARRL----RLNTNQILIVVGINLVITFTISGIDKWGHLGGLGTGLL 356
Query: 292 -------MPGRRVPLQLLG 303
+P RRV LQ LG
Sbjct: 357 LGLLYAYVPSRRVALQALG 375
>gi|417886300|ref|ZP_12530447.1| peptidase, S54 family [Lactobacillus oris F0423]
gi|341593798|gb|EGS36623.1| peptidase, S54 family [Lactobacillus oris F0423]
Length = 215
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V +Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVALIAIQVTIYLLMTLAGGSTNPAVLLQFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLVIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ R + L+ L++ +++ N+ L++ GID GH
Sbjct: 128 IMLGASFRE-----NQALRMLSRQFLILVVLNIVTDLMVPGIDLAGH 169
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 131 RQWTNILLAVNVLVYIA---QFATQDKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R +T IL+ +NV V+IA + + L L GA + + GQ++RL TS F H
Sbjct: 82 RLFTKILIGINVAVFIAIQAKASLATDLSLVGAWPPAPFQPTEGVADGQYYRLVTSMFAH 141
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGA 239
I H+ N SL +G +E G RYL VYF S +A A++Y ++ +GASGA
Sbjct: 142 QEIWHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGGALAYLLASPSTATLGASGA 201
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
IFGL G+ AV +MR N +L+ + +++ N+ GI H
Sbjct: 202 IFGLFGATAV-LMRRLNY------DLRPIIALLVINLIFTFSWSGISWQAH 245
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDK------GQFWRLATSAFLHAN 183
T IL+ +N+ V++A A D+ + L G + L+ + GQ++RL TS FLH +
Sbjct: 88 TKILIGINLAVFVAVLALGDRFVDEMSLIGLAYSPLLGEVVGLADGQWYRLLTSVFLHQD 147
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H+ N +L +G +E G R+L +Y S + Y N +GASGAIF
Sbjct: 148 LSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLSEPNQATIGASGAIF 207
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GLVG+FAV ++R N+ +L+ + +I ++ + ++ G +W
Sbjct: 208 GLVGAFAV-LLRRMNL------DLRPVGLIIAISVVLTVVRPGEISW 247
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLPAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RY+ VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYVAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 176
>gi|330997596|ref|ZP_08321442.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329570307|gb|EGG52042.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 478
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 13/180 (7%)
Query: 136 ILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL N+LV+ T LL WGA L G +WR+ T F+H+ + HL
Sbjct: 63 LLLGCNILVFFVMCLTGVGVLEPDNISLLHWGANFGPLTLTGDYWRVWTCNFVHSGLIHL 122
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAIFGLVG 245
++N Y+L +G +E + G R + VY + + SS FC++ +VGASGAIFGL G
Sbjct: 123 IMNVYALLFVGLFLEPMLGSLRVVMVYSLAGLYSSVAGL-FCHADWISVGASGAIFGLYG 181
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT 305
+ ++ ++ K L + I++N+ G+ +DN H G V LLG+
Sbjct: 182 ALFARLLFYKGQSSWRKILLIAIGGFILYNLLYGIGDNNVDNAAH--TGGLVAGFLLGVV 239
>gi|256850860|ref|ZP_05556249.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260661071|ref|ZP_05861985.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
gi|256615922|gb|EEU21110.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260548008|gb|EEX23984.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
Length = 215
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 7 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVF 250
+L +G +E + G R+L +Y + + + M+ F + AV GAS A+FGL G+
Sbjct: 67 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTMAFGSDNAVSAGASTALFGLFGAMIAL 126
Query: 251 IMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+ +R E + +L + + + N+ + + ID WGH
Sbjct: 127 GIANRT-----HEGMAYLGRQSFVLAVINLLFDINVPQIDTWGH 165
>gi|227530504|ref|ZP_03960553.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
gi|227349609|gb|EEJ39900.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA++ SLI +GQ+WRL T FLH IAHL++N +L +G +E++ R L +Y SA
Sbjct: 42 GARVTSLIHEGQWWRLITPVFLHIGIAHLIINSITLYFLGMYIEELFSHWRMLVIYLVSA 101
Query: 219 IASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VII 273
+ A +Y N+ + GAS A+FGL G+F + + E +Q L++ ++
Sbjct: 102 FTGNLASAYFLPNTISAGASTALFGLFGAFLMLGESFHD-----NELIQDLSRQFLILVG 156
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ + + G+D GH
Sbjct: 157 INIVMDFFLPGVDLAGH 173
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 116 GTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLI 166
G + RT F GRQ T L+A+NVL ++ Q A + +L LW +
Sbjct: 53 GARTIRQPRTR-FGGRQRSAAPVLTYALIAINVLAFVLQLAAGNLERQLALW----PPAV 107
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226
GQ++RLATSAFLH HL+ N ++L +GP +E G R+ +Y S + S + Y
Sbjct: 108 ADGQYYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGSVLVY 167
Query: 227 RFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
++ GASGAIFGL G A F++ R
Sbjct: 168 LVSPLDTATAGASGAIFGLFG--ATFVVGKR 196
>gi|297801768|ref|XP_002868768.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297314604|gb|EFH45027.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 399
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI GQ+WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 182 LLYGAKINDLILAGQWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 241
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ + MS+ P VG +G F L+G++ V +++ ++ E + L + I
Sbjct: 242 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMI--KSNEYEDLFQKAIIM 299
Query: 276 MAIGLLIK---GIDNW 288
GL++ ID+W
Sbjct: 300 TGFGLILSHFGPIDDW 315
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 14/136 (10%)
Query: 131 RQWTNILLAVNVLVYI---AQFATQDKLLLWG-AKINSL------IDKGQFWRLATSAFL 180
R T IL+ +N+ V++ A A +D LLL+G A ++ + +GQ++RL TS FL
Sbjct: 86 RLITKILIGINLAVFVGVLAHPALRDDLLLFGRAYVDERSAGYQGVAEGQWYRLVTSTFL 145
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H + H+ N L +G +E G RYL +Y S +A SA++Y + PA +GAS
Sbjct: 146 HQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYLIAD-PAQGTLGAS 204
Query: 238 GAIFGLVGSFAVFIMR 253
G++FGL+G+ AV + R
Sbjct: 205 GSVFGLLGATAVLMRR 220
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 22/169 (13%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIA 185
+L + VL++I + T D LL WG I D +WRL T FLHA
Sbjct: 18 ILTLTVLIFILELVIGGGQTDDGQLLVVLGAKWGPYIKLHHD---YWRLVTPLFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+ N +L IGP +E G R++L +Y S + + SY F + +VGAS A+FGL
Sbjct: 75 HVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYLFAPLTVSVGASSALFGLF 134
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ ++ ++ I G + +A N+ G GID WGH
Sbjct: 135 GGMILYAIQFKDDPRIRSQGTVMIMFVA----LNLVTGFATTGIDMWGH 179
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIIMTLFGGTENIVNLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|242040475|ref|XP_002467632.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
gi|241921486|gb|EER94630.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
Length = 335
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 104 ATLQKLGALVW----DKVVQEHQGWRLVTCIWLHAGVAHLLANMVSLVLIGLRLEQQFGY 159
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 160 VRIGIIYLVSGVGGSVLSSLFVRNTISVGASGALFGLLGAMLSELFTNWTIYSNKAAALV 219
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 220 TLLIVIAINLAIGIL-PHVDNFAH 242
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 11/161 (6%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ILL + + V+ FA + K L G N L+ +G++WRL T FLHA ++H + N ++L
Sbjct: 25 HILLWLIMDVFSFPFAVEWKQL--GVGNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAV 249
GP +E++ G +++ Y + IA + +Y P +GASGAIFGL G +A
Sbjct: 83 VLFGPALERMLGKVKFIIAYLLAGIAGNIGTY--AADPGAFHSHLGASGAIFGLFGIYAY 140
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +++L + Q + I+ + + L I+ GH
Sbjct: 141 MLFARKDLL--DQASSQIIGVFIVLGLIMTFLQPNINVLGH 179
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQ------HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ +R KE+ Q L +I N+ G ID WGH
Sbjct: 134 GGLILYAIRF-------KEDPQVKSMGTMLGLFVILNLVTGFSSTDIDIWGH 178
>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]
Length = 585
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + +++++++ E + H A + +I ID+W H
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTH 410
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+L++ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLIFALCVLQAGVGDPGGASIFSAGDLLKSDVAAGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F N A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAAVMLFENDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V I++ R + +I FN+ + + GI GH
Sbjct: 134 GAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 172
>gi|257869580|ref|ZP_05649233.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357050773|ref|ZP_09111970.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
gi|257803744|gb|EEV32566.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355380925|gb|EHG28057.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
Length = 226
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 133 WTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
+T LA+ LV+I + TQ +++G + + ++WR T F+H +AH V
Sbjct: 14 FTYTFLAIQTLVFIIGYISPMTQVMGVMFGPYVAYM---NEYWRFVTPIFIHFGLAHFAV 70
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSF 247
N L +G +E I G R+ +Y S + +AMS+ F + + GAS ++FGL G+F
Sbjct: 71 NSVILYFMGQQVEAIYGHARFFILYLMSGVMGNAMSFAFNQAGVQSAGASTSLFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +N + ++ A ++ N GL + ID WGH
Sbjct: 131 LILGLHFKNDY-QIQAMVRQFALFVVLNFVFGLFDQSIDIWGH 172
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 28/161 (17%)
Query: 115 EGTSHLDTARTNLFIGR-------QWTNILLAVNVLVYIAQFATQDKL------------ 155
EG + +ART F G+ W+ +L + V+ ++ Q T L
Sbjct: 16 EGNRRVRSARTT-FGGKVVDKPYVTWS--ILVMMVVGFVLQLGTSTPLGQALSTPLVQHF 72
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+WG ++ G+++RL T+AFLH + HL+ N Y++ ++GP +E+ G R+L ++F
Sbjct: 73 SMWG---QGVVWHGEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLALWF 129
Query: 216 SSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHR 255
A++ S +S N P+VGASGAIF L G AVF++ R
Sbjct: 130 LGALSGSVLSLIATPNQPSVGASGAIFALFG--AVFVIGRR 168
>gi|363419988|ref|ZP_09308085.1| serine peptidase [Rhodococcus pyridinivorans AK37]
gi|359736660|gb|EHK85603.1| serine peptidase [Rhodococcus pyridinivorans AK37]
Length = 308
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 20/169 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T +L+A+NVLV+ A ++ W + G++ R+ S FLH
Sbjct: 86 TYVLIALNVLVFGITAAQSGSVMTNEQGSALFLDWALWPPIIAAHGEYIRILGSGFLHFG 145
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
+ HL VN ++L IG E + G RYL VY S + SA + F + AV GASGA+F
Sbjct: 146 LLHLAVNMFALWVIGRDTELVLGRARYLSVYLVSILGGSA-AVMFMETGAVTAGASGAVF 204
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ AV ++R R + ++ N+ I + + GI WGH
Sbjct: 205 GLLGAQAVILLRLR-------RSPAPVLTIVGLNVIISITVPGISLWGH 246
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 132 QWTNILLAVNVLVY--IAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+ +L+A+N+++Y ++ + L+ +G N I G+ WR+ T FLH +I HL
Sbjct: 16 KLVTVLIAINLVIYFWMSMYPKLGGQLIEAYGVGSNYHIAMGELWRIVTPIFLHGSIMHL 75
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGL 243
+ NC+SL GP +EK+ G + L YF++ I ++ + F +P +GASGAI+GL
Sbjct: 76 LFNCFSLFLFGPALEKMLGKGKLLIAYFATGILANIAT--FILAPLFYFHLGASGAIYGL 133
Query: 244 VGSFAVFIMRHRNIL 258
G + ++ ++++
Sbjct: 134 FGIYLYMVLVRKDLI 148
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLLL-----------WGAKINSLID-KGQFWRLATSAFLHANI 184
L+ +NVLV+I + LL GA ID GQF+R T+ FLH N
Sbjct: 23 LIVLNVLVFIIMMINRYTNLLTDLLNGYTLIQLGAIQTYTIDATGQFYRFLTAMFLHGNF 82
Query: 185 AHLMVNC-YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
H++ N + L +G +E + G R+ VYF + IASS Y + VGASGAI+
Sbjct: 83 LHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASSYGVYLLSGPYTVTVGASGAIY 142
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G++G I+ + ++ +L +A++II N+ + ++ GI GH
Sbjct: 143 GILGVLLFMIVFKKTLVPYNDRKL--IAQLIILNVILSFVLSGISLEGH 189
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 137 LLAVNVLVYI-------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNV++++ + +L + A + G++WRL T+ FLH ++ H+ V
Sbjct: 33 LIAVNVVIFVICALQARGVDMLRSQLFVDWALYKPWVADGEYWRLLTAGFLHFSVTHIAV 92
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLVGSF 247
N SL +G +E G RYLGVY ++ + SA M N GASGAI+GL+G+
Sbjct: 93 NMLSLYILGRDLEIAIGIPRYLGVYLTALLGGSAAVMVLGADNGVNAGASGAIYGLMGAV 152
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V +++ R + +I+ N+ + + I GI + H
Sbjct: 153 LVVVIKAR-------ASPTPVITIIVLNLVLSVTIPGISLFAH 188
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 137 LLAVNVLVYIAQFATQDKLLL--------WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+++V V++ I +A D L L +G N+ I+ GQ+WRL T FLH + H++
Sbjct: 18 VVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHML 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI-ASSAMSYRFCNSPA-VGASGAIFGLVGS 246
N +SL GP +E++ G +++ Y +AI A+ A+ + S A +GASGAIFGL G
Sbjct: 78 FNSFSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGI 137
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +M ++++ + Q +A ++ + + + I GH
Sbjct: 138 YVFMVMYRKDLI--DQSSSQMIAVIVGIGLVMTFIRPNISILGH 179
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQ------HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ +R KE+ Q L +I N+ G ID WGH
Sbjct: 134 GGLILYAIRF-------KEDPQVKSMGTMLGLFVILNLVTGFSSTDIDIWGH 178
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAK LI +GQ+WRL T+ FLH I HL++N +L +G +E + G R L +Y S
Sbjct: 41 GAKDTPLILQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSV 100
Query: 219 IASS--AMSYRFCNSPAVGASGAIFGLVGSFAVF-IMRHRNILGGGKEELQHLAKVIIFN 275
++ + +M + NS + GAS +FGL G+F + I+ N+L ++ + ++IFN
Sbjct: 101 VSGNLFSMVMQPVNSVSAGASTGLFGLFGAFIMLGIVFRDNLL--VRQIARQFFILVIFN 158
Query: 276 MAIGLLIKGID 286
LL+ G+D
Sbjct: 159 FGADLLMPGVD 169
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N++V++ +T ++L ++GAK + +G++WRL + FLH I HL
Sbjct: 24 TYILIGINLVVFMGTVFAGGSTDIRVLYMFGAKFTPALLQGEWWRLIAAMFLHDGIGHLF 83
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +L IGP +E G R L +Y S + + +S + + AVGASGA+FGL G++
Sbjct: 84 INMITLYFIGPEIEDHYGHARMLVIYLLSGLYGNLLSAFWAPTTLAVGASGALFGLFGAY 143
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
I+ H++ + + + +I N+ +G
Sbjct: 144 --LILGHQSTDAQIQAQARQFLLFVILNVVLG 173
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNM 276
NS + GASGAIFG++G + + ++RN + G G++ L A I+ M
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGM 171
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MR---HRNILG 259
+ R ++G
Sbjct: 285 LSKTFDRKVIG 295
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MR---HRNILG 259
+ R ++G
Sbjct: 285 LSKTFDRKVIG 295
>gi|326803846|ref|YP_004321664.1| S8/S53 family peptidase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650087|gb|AEA00270.1| peptidase, S54 family [Aerococcus urinae ACS-120-V-Col10a]
Length = 221
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
T LLA+ +++Y+ + LLL+GAK N+LI GQ+WRL T F+H +HL
Sbjct: 8 TYTLLAIQIIIYLLMEFTGSSLSSSTLLLFGAKENALIAIYGQYWRLLTPIFVHIGFSHL 67
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N +L +G +E I G R+L +Y S I + SY+F S + GAS A+FGL F
Sbjct: 68 LFNSITLWYLGSEVEGIIGSWRFLFIYLYSGIMGNLFSYQFSTSVSAGASTALFGL---F 124
Query: 248 AVFI-MRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGH 290
A F+ MR+ N + + + +II N+ + L + +D GH
Sbjct: 125 AFFLAMRYLNPHDRYFQAMGYQYQTLIILNIIMNLFMANVDMSGH 169
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 137 LLAVNVLVY--IAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +NV+V+ + L+ A + +SL+D GQ++ L TS FLH + HL+ N
Sbjct: 14 LIVINVVVFAVLEVLGMTQGYTLYNAGVLTTSSLLD-GQYYTLITSMFLHGGLMHLLCNM 72
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGS 246
++ IG +E + GP R+L +YF S IA S N VGASGA+FGL G+
Sbjct: 73 ITMYYIGTVIEDVFGPVRFLIIYFLSGIAGGLTSMAVMIAAGENGGVVGASGALFGLFGA 132
Query: 247 FAVFIMR-HRNIL----GGGKEELQHLAKVIIFNMAIGL 280
+ ++R HR + +L+ ++ N+ IGL
Sbjct: 133 YGYLLVREHRKPVVFMRPTSSSDLKGFFGFLVLNIIIGL 171
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 69 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 128
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
H+ N SL IG +E G RYL VYF S +A A++Y + + ++GASGA
Sbjct: 129 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTSPQTASLGASGA 188
Query: 240 IFGLVGSFAVFIMR 253
IFGL G+ AV + R
Sbjct: 189 IFGLFGATAVLMRR 202
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 83 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 142
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
H+ N SL IG +E G RYL VYF S +A A++Y + + ++GASGA
Sbjct: 143 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTSPQTASLGASGA 202
Query: 240 IFGLVGSFAVFIMR 253
IFGL G+ AV + R
Sbjct: 203 IFGLFGATAVLMRR 216
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG--------AKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N +V++ + + L + A + + G+F+RL T+ FLHA++
Sbjct: 78 TYLLIAINAVVFLLEQVSPRFELRYALIPGETGFAHPYAGVAGGEFYRLITAMFLHASVL 137
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGL 243
H++ N ++L +G +E + G R+L +YF + + S Y F S +GASGAIFGL
Sbjct: 138 HIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTAVYLFAPRGSATLGASGAIFGL 197
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ VF R N +++ + VI+ N+A+ ++ G+ GH
Sbjct: 198 FAALFVF-GRRLNF------DIRPIGLVIVINLALTFVLSGVSWQGH 237
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L + + + I GQ+WRL TS FLH ++ H
Sbjct: 44 TYALIAINVVVFAICIAEAGGLQVLNSPLFLDWSLYKPAIADGQYWRLFTSGFLHLSVIH 103
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ N +L +G +E G RY+ VY +S SA F + AV GASGAI+GL+
Sbjct: 104 IAGNMLALYILGRDLELALGIPRYVAVYVTSLFGGSAFVMLFESDTAVTAGASGAIYGLM 163
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V +++ R + +I N+ + + I GI W H
Sbjct: 164 GAILVVLLKAR-------LSPVPVLSIIGLNIVLSIAIPGISIWAH 202
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 137 LLAVNVLVY----IAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNVL+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVLILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIG 125
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 22/197 (11%)
Query: 126 NLFIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQFW-RLATSAF 179
N F G T L+A+NVLVY+ A +T +L+ GA + ++I G W L TS F
Sbjct: 3 NFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMF 62
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F NS + GAS
Sbjct: 63 VHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSISAGAS 122
Query: 238 GAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMA---------IGLLIKG- 284
GAIFG++G + + ++RN + G G++ L A I+ M +G L+ G
Sbjct: 123 GAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGMFGTNIDIFAHLGGLVAGF 182
Query: 285 IDNWGHDMPGR-RVPLQ 300
+ +G P +VPL+
Sbjct: 183 LLGYGFSFPNLGKVPLK 199
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFVTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNM 276
NS + GASGAIFG++G + + ++RN + G G++ L A I+ M
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGM 171
>gi|295702423|ref|YP_003595498.1| S54 (rhomboid) family peptidase [Bacillus megaterium DSM 319]
gi|294800082|gb|ADF37148.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium DSM
319]
Length = 200
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGFLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLTQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI 154
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG +N + G++WRL T FLHA AH + N +SL GP +E++ G +++ +Y +
Sbjct: 46 WGMGVNVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFA 105
Query: 218 AIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
IA + + F P+ +GASGAIFG+ G + + ++++ ++
Sbjct: 106 GIAGNVGT--FIVDPSAYYAHLGASGAIFGIFGVYIFMVWNRKHLIDQANSQI 156
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 137 LLAVNV----LVYIAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNV L+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVFILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIG 125
>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana]
gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana]
gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana]
gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 434
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI G++WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ + MS+ P VG +G F L+G++ V +++ ++ E + L + I
Sbjct: 276 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMI--KSNEYEDLFQKAIIM 333
Query: 276 MAIGLLIK---GIDNW 288
GL++ ID+W
Sbjct: 334 TGFGLILSHFGPIDDW 349
>gi|117921729|ref|YP_870921.1| rhomboid family protein [Shewanella sp. ANA-3]
gi|117614061|gb|ABK49515.1| Rhomboid family protein [Shewanella sp. ANA-3]
Length = 525
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ F +Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 333 TPILLYINTLIFVLMAFVSQHVIALPNSVLLDWGANLRQLVLEQQVWRLISNVFLHGGLM 392
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R L VY + +S S + + ++GASGAI GL
Sbjct: 393 HLVFNLYGLFFAGMFLEPLLGKWRLLWVYLCCGLVASMASIGWYEATISIGASGAIMGLF 452
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +L + ++ +GL G+DN H
Sbjct: 453 GVLIIWIWLGLLPLADNMPLALNLTLFVTASLVMGLF-GGVDNAAH 497
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ F + +L+ G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIIVWLFMFLVLNAFSDTRLIDLGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAV 249
SL G +E I G + LG+Y S I + +S NS +VGASGAIFGL+GS FA+
Sbjct: 222 LSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVSLAIDNSSISVGASGAIFGLIGSLFAM 281
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + ++ L L V++ + L I ++ + H
Sbjct: 282 MYISKQ----YDRKSLFQLIGVLLILTFVSLFITNVNIYAH 318
>gi|194688302|gb|ACF78235.1| unknown [Zea mays]
Length = 336
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 105 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 160
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 161 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 220
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 221 TLLVVIAINLAIGIL-PHVDNFAH 243
>gi|414867422|tpg|DAA45979.1| TPA: membrane protein [Zea mays]
Length = 334
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 219 TLLVVIAINLAIGIL-PHVDNFAH 241
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--QDKLLLWG-AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+I++ +NVL+Y ++LL A IN I +G++WRL T LH+ H++ N
Sbjct: 18 VSIIVGLNVLLYFFTILPIFPNRLLFEKLAGINLYIAEGEYWRLVTPILLHSGFPHMLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
+SL GP +E+I G +++ +YFS+ IA++ + F P VG+SGAIFGL G
Sbjct: 78 SFSLILFGPALERIIGKNKFVILYFSTGIAANIAT--FFVKPLTFIHVGSSGAIFGLFGF 135
Query: 247 FAVFIMRHRNILGGGKEEL 265
+ + +++L ++
Sbjct: 136 YIAMTLFKKHLLSKQNTQI 154
>gi|195652545|gb|ACG45740.1| membrane protein [Zea mays]
Length = 334
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 219 TLLVVIAINLAIGIL-PHVDNFAH 241
>gi|115483002|ref|NP_001065094.1| Os10g0521900 [Oryza sativa Japonica Group]
gi|113639703|dbj|BAF27008.1| Os10g0521900, partial [Oryza sativa Japonica Group]
Length = 338
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 107 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 162
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 163 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 222
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 223 TLLIVIAINLAIGIL-PHVDNFAH 245
>gi|436838188|ref|YP_007323404.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
gi|384069601|emb|CCH02811.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
Length = 251
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV++ T L+ WGA L GQ WRL T+ FLH +
Sbjct: 30 TPILMGINILVFVGMVLTGVNIMSPTGQDLVNWGANYTPLTYGGQPWRLLTACFLHIGLI 89
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H++VN SL +G +E + G R+ Y + + S +S + + + GASGAIFG+
Sbjct: 90 HIVVNMMSLRVLGSQIEPLLGTSRFAVGYVVTGLTGSLVSLWWHDMVVSAGASGAIFGIE 149
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + K L++ V+ N+ IG I G DN H
Sbjct: 150 GMLVGLLLTNLFDAAARKALLKNSLSVVGINLLIGAGI-GADNAAH 194
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIG 279
G+F + R+ + + + L I+F+ A+
Sbjct: 139 YGAFLYVALFQRSFMDDASRKTLYTLLGFGILFSFAVA 176
>gi|89099189|ref|ZP_01172067.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
gi|89086035|gb|EAR65158.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
Length = 522
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH + HL++N +L +G +E+I G R+L +Y
Sbjct: 217 LIEYGAKYNPLILEGEWWRFFTPIVLHIGLLHLIMNTLALYYLGTAVERIYGSTRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ + S+ F +S + GASGAIFG G+ F + + + ++ V+
Sbjct: 277 ILAGFMGALASFLFNSSVSAGASGAIFGCFGALLYFGLIQPKLF--FRTMGLNILIVLGI 334
Query: 275 NMAIGLLIKGIDN 287
N+ G + GIDN
Sbjct: 335 NLLFGFSVPGIDN 347
>gi|453068740|ref|ZP_21972014.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
gi|452765301|gb|EME23561.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
Length = 240
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 131 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 175
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAIFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIG 279
G+F + R+ + + + L I+F+ A+
Sbjct: 139 YGAFLYVALFQRSFMDDASRKTLYTLLGFGILFSFAVA 176
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMM 283
Query: 252 MRHRNI 257
++NI
Sbjct: 284 YVYKNI 289
>gi|229491196|ref|ZP_04385024.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229321934|gb|EEN87727.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length = 240
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 131 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 175
>gi|225375145|ref|ZP_03752366.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
gi|225213019|gb|EEG95373.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
Length = 357
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIA-QF--ATQDKLLLW--GAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T ++ N+LVYI F AT+D + GA + Q+WRL T+ FLH +AHL
Sbjct: 170 TGLIALANILVYIILSFGGATEDAFYMASRGAMYPEFLTINHQWWRLLTAMFLHFGVAHL 229
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GASGAIFG 242
M N +G +EK G + VYF++ I +SY + AV GASGA+FG
Sbjct: 230 MNNMVIFCCVGSRLEKYIGHWKMAVVYFAAGIGGGLLSYIMMLLSGNYAVSGGASGAVFG 289
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++G ++ HR L G + + +I+ ++ G G+DNW H
Sbjct: 290 VIGGLLWVVIYHRGKLEG--MTTKGILIMIVLSLYFGFTSIGVDNWCH 335
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ G +RL S F+H HL+VN ++L IG +E I G RYL VYF S + SA
Sbjct: 67 LVANGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVELILGRSRYLAVYFLSLLGGSAS 126
Query: 225 SYRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
N A GASGA+FGL+G+ AV ++R K + +I N+ I + I
Sbjct: 127 VMVLENPLAATAGASGAVFGLLGAQAVILLRL-------KRSPAPVLIIIALNIFISVSI 179
Query: 283 KGIDNWGH 290
I WGH
Sbjct: 180 PSISLWGH 187
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-----------KGQFWRLATSAFLHA 182
T L+A N+ VY+A L + ++L + + ++WRL TSAF H
Sbjct: 21 TAWLIAANLAVYVATVVQARSFL--DNRASALFEFTALYPPLVAFRDEWWRLLTSAFQHF 78
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
HL++N Y L +G +E+ G RYL +Y SA+ S F N+ GASGAIF
Sbjct: 79 GPMHLLLNMYMLWLLGIGIERSVGHARYLAMYLVSALGGSVAVMFFSQNALTAGASGAIF 138
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G++A+ M R +++ + +++ N+ + ++ GI H
Sbjct: 139 GLMGAYAIVAMTMR-------VDVRGIGILLVLNVGVSFIVPGISLAAH 180
>gi|414867424|tpg|DAA45981.1| TPA: hypothetical protein ZEAMMB73_979905 [Zea mays]
Length = 254
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINLAIGIL 147
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 148 -PHVDNFAH 155
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 157 LW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW GA + G+ +RL SAFLHA+ HL VN +L S GP +E + GPRR+L +Y
Sbjct: 208 LWRMGANSGEAVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLY 267
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+SA+ S S + +VGASGAI+GL+ + +R +L
Sbjct: 268 GASALGGSLASAMLEDRWSVGASGAIWGLMTAGIGVALRPHGLL 311
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF--IMRHRNILG 259
+ G R + +YF SA+ + S F S + GAS AIFGL G+F + RH I+
Sbjct: 86 EFFGHWRMVVIYFVSALFGNFTSAVFMPSTISAGASTAIFGLFGAFLMLGVCFRHNVIV- 144
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +I N+ + + G+D GH
Sbjct: 145 --RVLSRTFLLFVIINIVMDFFLSGVDLIGH 173
>gi|125575434|gb|EAZ16718.1| hypothetical protein OsJ_32194 [Oryza sativa Japonica Group]
Length = 253
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 152 QDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++L GA + + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R
Sbjct: 21 EERLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRI 80
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y S I S +S F NS +VGASGA+FGL+G+ + + I L L
Sbjct: 81 GIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLL 140
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
VI N+AIG+L +DN+ H
Sbjct: 141 IVIAINLAIGIL-PHVDNFAH 160
>gi|226182622|dbj|BAH30726.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 266
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 37 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 96
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 97 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 156
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 157 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 201
>gi|212722852|ref|NP_001132594.1| uncharacterized protein LOC100194066 [Zea mays]
gi|194694850|gb|ACF81509.1| unknown [Zea mays]
Length = 248
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINLAIGIL 147
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 148 -PHVDNFAH 155
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WRL T FLH + HL
Sbjct: 184 FTYLLIAVQVVMFLLLELFGGSTNTATLTAFGAKNNGLILEGEWWRLMTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N ++L S+G +E+I G R+L +YF S I S S+ F + A GASGAIFG +G+
Sbjct: 244 LFNTFALWSVGAAVERIYGSWRFLLIYFISGIFGSIASFVFNTAIAAGASGAIFGCLGAL 303
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R + + ++ +I+ N+ IG + GIDN GH
Sbjct: 304 LYLAISNRKLF--FRTMGTNIIVIILINLGIGFTVSGIDNAGH 344
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +NVL+++ Q + D L+LW + G +RL T+AFLH H++ N
Sbjct: 75 TYALIGLNVLMFVLQSLSPDVERALVLWPPAVAG----GDLYRLLTAAFLHYGFTHILFN 130
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +G +E G RY +Y SA+ S ++Y NS GASGA+FGL G+
Sbjct: 131 MWALYVVGAPLEAALGRLRYGALYLLSALGGSVLAYLLSPLNSATAGASGAVFGLFGALF 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
V + R N+ +++ + +I+ N+A +I + +
Sbjct: 191 V-VGRKLNM------DVRGVVVIIVLNLAFTFIIPLVSS 222
>gi|325663211|ref|ZP_08151661.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470665|gb|EGC73895.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S++++G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEEGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLAVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++G+ +R+R +G + LA +++ ++ +G KG+DN H
Sbjct: 130 VIGALFYVALRNRGRIGNISS--RGLAFMVLCSLYLGFTSKGVDNSAH 175
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH +AH
Sbjct: 10 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVAH 69
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ +N SL +G +E G RYL VYF + SA M + N + GASGAI+GL+
Sbjct: 70 IALNMISLYILGRDLEAALGLGRYLMVYFVALFGGSAAVMLFEAGNVRSAGASGAIYGLM 129
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V +++ R + +I+ N+ + + GI H
Sbjct: 130 GAVLVVVLKAR-------VSPTGVITIIVINLVFSVTMPGISLAAH 168
>gi|110289433|gb|ABG66197.1| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
gi|215686404|dbj|BAG87689.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 227
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 7 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 66
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 67 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINLAIGIL 126
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 127 -PHVDNFAH 134
>gi|125532680|gb|EAY79245.1| hypothetical protein OsI_34361 [Oryza sativa Indica Group]
Length = 332
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 101 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 156
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 157 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 216
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 217 TLLIVIAINLAIGIL-PHVDNFAH 239
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 135 NILLAVNVLVY--IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
IL+A++VL++ I + + G +N + G +WRL T F+H H++ N
Sbjct: 19 TILVAIHVLIFFWINLLPGGEWIYYHGVGLNLAVHNGDYWRLVTPIFMHVGFMHVIFNSV 78
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAV 249
SL GP +E++ G R++ +Y SS I ++ +Y +GASGAIFGL G++
Sbjct: 79 SLILFGPPLEQMLGKFRFILLYLSSGIIANIATYYVGGLDYYAHLGASGAIFGLFGAYFY 138
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDM----PGRRVPLQLLGI 304
++ ++++ + Q + +++ + + + I+ + H +PL L+G+
Sbjct: 139 IVLNRKDLI--DQTSSQMIMTILVIGLVMTFVNPNINIYAHIFGAIGGALMIPLILIGV 195
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G+ WRLAT F+H+ H++ N +SL GP +E+I G ++ G+Y + I
Sbjct: 47 AGVNLFIREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGI 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+++ + VG+SGAIFGL G FA ++++ + +++II
Sbjct: 107 SANVATLLLEPLTYTHVGSSGAIFGLFGFFAAVAYFRKDLMS------RENSQIIITIAV 160
Query: 278 IGLLIKGID 286
IGL++ I
Sbjct: 161 IGLIMTFIQ 169
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 46 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
+ + M+ + AV GAS A+FGL G+ + +R E + +L + +
Sbjct: 106 GVGGNLMTLALGSDNAVSAGASTALFGLFGAMIALGIANRT-----HEGMAYLGRQSFVL 160
Query: 272 IIFNMAIGLLIKGIDNWGH 290
+ N+ + I ID WGH
Sbjct: 161 AVINLLFDINIPQIDTWGH 179
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFITLYLVSALGGSVLVYLLTLNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
F++ R N+ +++ + +I+ N+A LI
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNLAFTFLIP 212
>gi|14591283|ref|NP_143361.1| hypothetical protein PH1497 [Pyrococcus horikoshii OT3]
gi|3257922|dbj|BAA30605.1| 197aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 197
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
L+ + LV+I + D+ + A+IN L+ GQ+WRL T+ FLH H +N + L
Sbjct: 16 LIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLHMGFIHFGLNIFWLF 75
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
+G +E I G RR+L V+F+SA+ + +S P V GASG +FG+VG+
Sbjct: 76 YLGIDLEGIVGTRRFLTVFFASALVGNLLS-LITLPPYVASGGASGGLFGVVGA 128
>gi|357155676|ref|XP_003577199.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 383
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA ++ ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 106 LLKMGALDVSKIVQGRQGWRLITCIWLHAGVVHLLINVLCLLFIGIRLEQEFGFVRIGLV 165
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 166 YLISGFGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 225
Query: 273 IFNMAIGLLIKGIDNWGH 290
+ N+A+G+L + +DN+ H
Sbjct: 226 VVNLALGILPR-VDNFAH 242
>gi|352518163|ref|YP_004887480.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
gi|348602270|dbj|BAK95316.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
Length = 228
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 131 RQWTN------ILLAVNVLVYIAQFATQDKLLLWGAKINS-LIDKGQFWRLATSAFLHAN 183
R+W N L + +LV+I + + GA ++ Q+WR T F+H
Sbjct: 7 RRWLNQPIITYFFLGIQILVFIISYLFPGLIESQGAMFGPFVVYYSQYWRFITPIFIHYG 66
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ H VN L +G +E + G RY +Y S A + +S+ F NSP V G+S A+
Sbjct: 67 LMHFAVNSIVLYFMGQRLEAMYGHMRYFFIYLLSGAAGNLLSFAF-NSPGVQSAGSSTAL 125
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI----KGIDNWGH 290
FGL G+F V + ++N +Q L + + I LL + ID WGH
Sbjct: 126 FGLFGAFVVLGVHYKN-----NYAIQVLVRQFTLFIGISLLFSLFDRSIDIWGH 174
>gi|238028881|ref|YP_002913112.1| Rhomboid-like protein [Burkholderia glumae BGR1]
gi|237878075|gb|ACR30408.1| Rhomboid-like protein [Burkholderia glumae BGR1]
Length = 542
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+AVN+L+++A + ++ WGA +G +WRL T+ FLH + L
Sbjct: 162 LIAVNLLLFLAMAMSGVSALRPDVPAMIRWGANFGPDTLEGDWWRLLTAPFLHLGVFDLG 221
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN L +GP E+ G R L ++ F+ +A A + + GASGAIFGL G+
Sbjct: 222 VNLLVLARVGPLAERGYGGPRLLALFLFAGVMAGMASLLQDPMQCSAGASGAIFGLFGAL 281
Query: 248 AVFIMRHRNILGGGKEELQHLAK-VIIFNMAIGLLIKGIDNWGH 290
A +RHR G +A + + + GL+ IDN H
Sbjct: 282 AALRLRHRRAPGTDAGRPGLIAPGFVAYCLYYGLMHPAIDNVAH 325
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 32 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
+ + M+ + AV GAS A+FGL G+ + +R E + +L + +
Sbjct: 92 GVGGNLMTLALGSDNAVSAGASTALFGLFGAMIALGIANRT-----HEGMAYLGRQSFVL 146
Query: 272 IIFNMAIGLLIKGIDNWGH 290
+ N+ + I ID WGH
Sbjct: 147 AVINLLFDINIPQIDTWGH 165
>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746
[Cucumis sativus]
Length = 479
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA-SGAIFGLVGS 246
++C++L + G + + GP + +Y ++ + S+ P VG G +F ++G+
Sbjct: 292 ALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRXGPVFAMIGA 351
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL--IKGIDNWGH 290
+ + ++++++ + L K ++ + +L I ID W H
Sbjct: 352 WLSYQFQNKDVMTKDVSDKMFL-KALVAAVISSILSNIGPIDEWTH 396
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 23/170 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V YI Q A + G +I + Q++RL T+AFLHA
Sbjct: 68 TQILIGLCVAAYILQGAPGLTGRGTFNRFTGDFAMIGIRIAA---DDQYYRLLTAAFLHA 124
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAI 240
+ H++ N Y+L +G +E I G RYL ++ + A+ + +SY + + +VGAS AI
Sbjct: 125 GVLHILFNMYALYLLGFQLEAILGRARYLALFVAGALGGNTLSYVLGDGFTVSVGASTAI 184
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F ++ + R R + + + V+ N+AI ID WGH
Sbjct: 185 FAFFAAYYIIARRLR-------VDSRQILIVLGINLAITFSFSNIDKWGH 227
>gi|15240744|ref|NP_196342.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
gi|7546703|emb|CAB87281.1| membrane protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|20466143|gb|AAM19993.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|332003744|gb|AED91127.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
Length = 346
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+AIG+L
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 246 -PHVDNFAH 253
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++I ++LWG + N + G++WRL T FLHA AHL+ N S
Sbjct: 21 ILAIQSVLWIFCKLPIHSVILWGDAVTGYNLGVANGEWWRLITPIFLHAGFAHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
+ P +E++ G R+L VY S I + +Y + VGASGAIFGL G + +
Sbjct: 81 IFLFAPALERLLGKARFLLVYVGSGIIGNVGTYFTESLDYVHVGASGAIFGLFGVYLYMV 140
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+ + ++ Q +K+II + + +L+ I++
Sbjct: 141 LYRKELID------QENSKMIITLLVVAVLMTFINS 170
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R++ Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKMLGTWRFIVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR 253
I S F AVGASGAI GL+G+ A MR
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQMR 467
>gi|22122915|gb|AAM92298.1| putative membrane protein [Oryza sativa Japonica Group]
Length = 329
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 109 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 169 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINLAIGIL 228
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 229 -PHVDNFAH 236
>gi|297810841|ref|XP_002873304.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319141|gb|EFH49563.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 346
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLIFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+AIG+L
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 246 -PHVDNFAH 253
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF-IMRHRNILGG 260
+ G R + +YF SA + S F S + GAS AIFGL G+F + + H N++
Sbjct: 86 EFFGHWRMVIIYFVSAFFGNLTSAVFMPSTVSAGASTAIFGLFGAFLMLGVCFHHNVI-- 143
Query: 261 GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +I N+ + + G+D GH
Sbjct: 144 VRVLSRTFLLFVIINIVMDFFLSGVDLVGH 173
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 26/192 (13%)
Query: 113 GHEGTSHLDTA-RTNLFIG-------RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
G GT H +A R G R T IL+ +NV V++A + + L L GA
Sbjct: 57 GGGGTGHAPSASRPRTLAGGSVAADPRLITKILIGINVAVFLAVWVEKSLLADLYLVGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++RL TS F H I H+ N SL +G +E+ G RYL +Y
Sbjct: 117 PPAPFTPTQGVADGEWYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQHLGRARYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
S +A SA++Y + ++GASGA+FGL G+ AV + R R +++ + +++
Sbjct: 177 ISGLAGSALTYLLAGGGTASLGASGAVFGLFGATAVLMRRLRY-------DMRPIVALLV 229
Query: 274 FNMAIGLLIKGI 285
N+ I GI
Sbjct: 230 INLVITFGWSGI 241
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G++WRL T F+HA +HL+ N SL P +E++ G R+L VY S + + +
Sbjct: 53 IAEGEWWRLVTPVFIHAGFSHLLFNSMSLFLFAPALERMMGKLRFLAVYIGSGVIGNIGT 112
Query: 226 YRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y F P VGASGAIFGL G + ++ + ++ + +I+ +AI +L+
Sbjct: 113 Y-FIEPPEYTHVGASGAIFGLFGVYLYMVLFRKGLMDTANSQ------IIVTILAISILM 165
Query: 283 KGID 286
I+
Sbjct: 166 TFIN 169
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++L G + +I +G++WR T FLH + H++ N +SL GP +E++ G +L
Sbjct: 42 ERLYDLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFLI 101
Query: 213 VYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
Y + + ++ ++ F N P VGASGAIFGL G + ++ ++++ + Q +
Sbjct: 102 AYLGAGVLANITTF-FINPSFMFPHVGASGAIFGLFGIYIFMVVFRKSLI--DSQNAQIV 158
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+ + + + + GI+ + H
Sbjct: 159 TVIFLIGLIMTFIRPGINQYAH 180
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
F++ R N+ +++ + +I+ N+A LI
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNLAFTFLI 211
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + G++WRL T F+H I H++ N +SL GP +E++ G R++ Y +
Sbjct: 45 GIGYNLAVANGEWWRLITPIFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTG 104
Query: 219 IASSAMSYR---FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ ++ +Y P +GASGAIFGL G F ++ ++++ +L
Sbjct: 105 VIANIATYYLGGLSYPPHLGASGAIFGLFGMFVYLVLFRKDLIDQANSQL 154
>gi|449452364|ref|XP_004143929.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449495860|ref|XP_004159966.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 327
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
K N ++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y + +
Sbjct: 106 KWNKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVG 165
Query: 221 SSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S MS F N+ +VGASGA+FGL+G+ ++ + I L L +++ N+A+G
Sbjct: 166 GSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINLAVG 225
Query: 280 LLIKGIDNWGH 290
+L +DN+ H
Sbjct: 226 IL-PHVDNFAH 235
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+LV+ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLVFALCVLQSGVGDPGGASIFSAGDLLKSDVASGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F + A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYGIALLGGSAAVMLFEDDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V +++ R + +I FN+ + + GI GH
Sbjct: 134 GAMLVIVLKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 172
>gi|291521749|emb|CBK80042.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Coprococcus catus GD/7]
Length = 211
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
++I++ +++RL T F+H I+HL N L IG +E+ G +YL VY ++ + SSA
Sbjct: 56 AIIEEHEYYRLLTCTFIHFGISHLFNNMLVLAYIGDNLERALGKFKYLIVYLAAGVGSSA 115
Query: 224 MSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL--QHLAKVIIFNM 276
+S + S + GASGAIFG+VG+ V ++R+R G E+L + L F++
Sbjct: 116 VSAVWSMIKDEYSVSGGASGAIFGVVGALLVIVIRNR----GQLEDLNSRQLMLFAGFSI 171
Query: 277 AIGLLIKGIDNWGH 290
G+ GIDN H
Sbjct: 172 YHGVTSAGIDNMAH 185
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+++ + +++Y+ +F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 167 NVVIWLCMILYLNRFSDV-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAV 249
G +E I G R L +YF S + + +S F S +VGASGAIFGL+G+ FA+
Sbjct: 226 FIFGKIVESIVGSWRMLIIYFISGLFGNFVSLSFNTSTISVGASGAIFGLIGAIFAI 282
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ NVLV+I +++Q LL WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYFNVLVFILMAWSSQHFINLQGSFLLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + E++ +LA + ++ GLL G+DN H
Sbjct: 450 GILVIWAWKKIF-----PEDINWILSINLAFFVTISLVAGLL-GGVDNAAH 494
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + E++ +LA + ++ GLL G+DN H
Sbjct: 450 GILVIWAWKKIF-----PEDINWVLSINLAFFVTISLVAGLL-GGVDNAAH 494
>gi|119962891|ref|YP_945847.1| rhomboid family membrane protein [Arthrobacter aurescens TC1]
gi|403525113|ref|YP_006660000.1| rhomboid family membrane protein [Arthrobacter sp. Rue61a]
gi|119949750|gb|ABM08661.1| putative rhomboid family membrane protein [Arthrobacter aurescens
TC1]
gi|403227540|gb|AFR26962.1| putative rhomboid family membrane protein [Arthrobacter sp. Rue61a]
Length = 284
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 127 LFIGRQW-TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-- 183
L +GR T +++ + LVY+ Q+ + ++ + WR+ T+AFLH+
Sbjct: 72 LAVGRPLVTFVIIGLCALVYVLQWIVPGDAVFEDFAFANIFAVSEPWRMVTAAFLHSQGF 131
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS----AMSYRFCNSPAVGASGA 239
+ H+++N Y+L G +E + G R+L VY SAI S A++ VGASGA
Sbjct: 132 LLHIVLNMYTLWIFGQALEPLLGRIRFLAVYLISAIGGSVGFLALTPTLPPVGVVGASGA 191
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
IFGL G+ V + RHR GG E + L +I N AIG + I H
Sbjct: 192 IFGLFGAMLV-VQRHR---GG---ETKQLWVLIAINGAIGFFVPSIAWQAH 235
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R+L Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKMLGTWRFLVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR 253
I S F AVGASGAI GL+G+ A +R
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQLR 467
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
+++RL T+AFLHA + H++ N Y+L +G +E+I G RYL ++ AI + +SY
Sbjct: 205 EYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALFVVCAIGGNTLSYLIN 264
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ +VGAS A+FG ++ V R R + + ++ N+ I I ID
Sbjct: 265 GWNTFSVGASTAVFGFFAAYYVIARRLR-------ADTSAILIIVGINLIITFTIARIDK 317
Query: 288 WGH 290
WGH
Sbjct: 318 WGH 320
>gi|134096653|ref|YP_001102314.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909276|emb|CAL99388.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 259
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 36 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 88
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + HL +N +L IG +E + G R+ VYF S + S + F P GASG
Sbjct: 89 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTAVFVFGELVQPVAGASG 148
Query: 239 AIFGLVGSFAVFIMRHR 255
A++GL+G AV +R +
Sbjct: 149 AVYGLMGGIAVAALRLK 165
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ LI GQ++R+ T+ F+H HL N Y+L IG E I G R++ YF
Sbjct: 38 LLFGAQYGPLIKSGQWYRIITAMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYF 97
Query: 216 SSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+ I + ++ F S +VGASGAIFGLVG
Sbjct: 98 ITGIVGNVATHIFYYGSLSVGASGAIFGLVG 128
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIITSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R LG+YF + + + +S F + +VGASGAIFGL+G A+F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIG--AIFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 118 SHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGA----KINSLID-----K 168
+H A + F + T L+ N+ VY+A A ++ A + +L +
Sbjct: 5 THRGGAVSRFFRLQPVTAWLITANLAVYVATAAQARSIMANSASALFETTALFPPMVAVR 64
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYR 227
++WRL TSAF H HL++N Y L +G +E+ G R+LG+Y SA+ S A+ +
Sbjct: 65 DEWWRLLTSAFQHFGPMHLLLNMYMLWILGLGIERSIGHARFLGLYLVSALGGSVAVMFT 124
Query: 228 FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ GASGAIFGL+G++A+ M R +++ + +++ N+ + ++ G+
Sbjct: 125 SQNALTAGASGAIFGLMGAYAIVAMSLR-------LDVKGIGLLLVLNIGVSFIVPGVSL 177
Query: 288 WGH 290
H
Sbjct: 178 GAH 180
>gi|401406518|ref|XP_003882708.1| Rhomboid family protein, related [Neospora caninum Liverpool]
gi|325117124|emb|CBZ52676.1| Rhomboid family protein, related [Neospora caninum Liverpool]
Length = 283
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 136 ILLAVNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
I+ V V VYIA A T L ++GA I LI GQ WRL FLH N+
Sbjct: 64 IISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLHLNL 123
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFG 242
H+++N + + +G TME+ G ++ L YF I ++ +S FC GAS A+F
Sbjct: 124 FHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILANMISAAVLFCGQMKAGASTAVFA 183
Query: 243 LVG 245
L+G
Sbjct: 184 LIG 186
>gi|347533424|ref|YP_004840187.1| Rhomboid family protein [Roseburia hominis A2-183]
gi|345503572|gb|AEN98255.1| Rhomboid family protein [Roseburia hominis A2-183]
Length = 394
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNI--------LLAVNVLVYIAQFATQDK-----LL 156
+++G S +TA+ L G W NI L+ VNV+ Y+ D +
Sbjct: 177 QDTGTAYASAQNTAKNRL--GILWKNIRAEYVTIALVTVNVITYLVLEWLGDTTNGFFMA 234
Query: 157 LWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
GA I ++WR+ ++ FLH HL+ N L +G +E++ G +Y +Y
Sbjct: 235 EHGAMYPDFIRINHEWWRIISAGFLHFGAVHLVNNMVILYCMGSRLERVTGHLKYFLIYL 294
Query: 216 SSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL--QHL 268
S I + +SY + + GASGAIFG++G F ++ HR G E++ + +
Sbjct: 295 VSLIGAGLLSYGMMLRTGDYAVSAGASGAIFGVIGGFLWIVILHR----GRFEQITTRGI 350
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+I+ + G GIDNWGH
Sbjct: 351 MMMIVLTIYYGFSSAGIDNWGH 372
>gi|115486807|ref|NP_001068547.1| Os11g0704800 [Oryza sativa Japonica Group]
gi|62733172|gb|AAX95289.1| Rhomboid family, putative [Oryza sativa Japonica Group]
gi|77552712|gb|ABA95509.1| rhomboid family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645769|dbj|BAF28910.1| Os11g0704800 [Oryza sativa Japonica Group]
Length = 374
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+ ++ Q WRL T +LHA + HL++N L IG +E+ G R VY S +
Sbjct: 104 DVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLG 163
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S MS F S +VGASGA+FGL+GS ++ + ++ L L VI+ N+A+G
Sbjct: 164 GSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNLALG 223
Query: 280 LLIKGIDNWGH 290
+L + +DN+ H
Sbjct: 224 ILPR-VDNFAH 233
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T+ FLH ++ HL VN SL +G ++E GPR+Y VY ++ SA +
Sbjct: 50 LAGGEYWRLLTAGFLHLSLIHLGVNMLSLYVLGVSLEPALGPRQYTAVYLTALFGGSA-A 108
Query: 226 YRFCNSPAV---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
P GASGAI+GL+G+ + ++R R + + +I N+ + L +
Sbjct: 109 VSMLGEPTTMTAGASGAIYGLMGALLILVLRAR-------MSVAPVVGIIAINVVLSLTL 161
Query: 283 KGIDNWGH 290
I H
Sbjct: 162 PNISILAH 169
>gi|168002718|ref|XP_001754060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694614|gb|EDQ80961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 579
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ N L+A+N+ VY+ A+ ++ L+GAK+N LI G +WRL T FLH+
Sbjct: 324 FVNGLVALNIAVYLFGLASPLEVPGMVDASLPYLYGAKVNELIVNGDWWRLVTPMFLHSG 383
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL ++ ++L GP +E G + +Y + +S+ VG SG IF L
Sbjct: 384 LLHLGLSTWALLEFGPAVESAYGTLGFTMIYLLGGAYGNLLSFFHTPQGTVGGSGPIFAL 443
Query: 244 VGSFAVFIMRHRNILG---GGKEELQHLAKVIIFNMAIGLLIKG--IDNWGH 290
+ ++ V+I+R+R+I+G G + + KVIIF L +D+W H
Sbjct: 444 MAAWVVYILRNRDIIGLDVAG----EIVRKVIIFTAITYALCNSFPVDDWTH 491
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 13/164 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ V ++ R ++ ++ L +I N+A G L+ GI H
Sbjct: 195 YLVIMVVLRE-----RDNIRALMIMIAVNVAFGFLVPGISWQAH 233
>gi|424780986|ref|ZP_18207852.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
gi|422842406|gb|EKU26858.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
Length = 200
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ L+ +GQ+WRL T+ F+H AHL +N +L IGP +E G RYL +Y
Sbjct: 45 LLTFGAEWGPLVHQGQWWRLITAMFVHIGFAHLFLNLLTLYFIGPELEFYLGKIRYLLLY 104
Query: 215 FSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQHLAKV 271
I + +S F N+ + G S A+FGL G + V R + + G++ +A
Sbjct: 105 LLCGIGGNVVSLFFDGNAISAGCSTALFGLFGYYIVQAKRSSSPWMRELGRQYFVFIAMN 164
Query: 272 IIFNM 276
IIFN+
Sbjct: 165 IIFNL 169
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + +G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LIVYIASGIIGNIGTYLVEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMT 157
Query: 269 AKVI 272
VI
Sbjct: 158 LLVI 161
>gi|421836033|ref|ZP_16270628.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
gi|409742181|gb|EKN41685.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
Length = 266
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINFQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + E++ +LA + ++ GLL G+DN H
Sbjct: 450 GILVIWAWKKIF-----PEDINWVLSINLAFFVTISLVAGLL-GGVDNAAH 494
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T +L+ VN+ V+I T L+ +GA + L+ GQ+WR+ ++AF+H H
Sbjct: 12 KVTLVLMIVNIAVFILMSLTGGSENISNLVRYGAMVKPLVHDGQWWRILSAAFIHIGFFH 71
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+M N Y L +IGP E++ G +L +Y + + + +Y F + V GAS +++G+
Sbjct: 72 IMFNMYFLYNIGPLFERLYGSINFLIIYLLAGVMGNLFTYAFGDVSTVSAGASTSLYGMF 131
Query: 245 GSFAVFIMRHRNILGGGKEELQHLA----KVIIFNMAIGLLIKGIDNWGH 290
G ++ +++ L+ L +I+ N+ LL GI GH
Sbjct: 132 GLAMGLMINYKD-----DAVLRGLGASFISIIVINLIYSLLAPGIGIQGH 176
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + E++ +LA + ++ GLL G+DN H
Sbjct: 450 GILVIWAWKKIF-----PEDINWVLSINLAFFVTISLVAGLL-GGVDNAAH 494
>gi|331086792|ref|ZP_08335869.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409958|gb|EGG89393.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 209
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S+++ G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEDGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLTVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++G+ +R+R +G + LA +++ ++ +G KG+DN H
Sbjct: 130 VIGALFYVALRNRGRIGNISS--RGLAFMVLCSLYLGFTSKGVDNSAH 175
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N+ + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
L VY +S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|255646809|gb|ACU23876.1| unknown [Glycine max]
Length = 212
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A + +S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLL--IKGI 285
P VG +G +F ++G++ ++ +++++++ E L H K +I I +L I
Sbjct: 63 TPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFH--KAVIMTALIFILSHFGPI 120
Query: 286 DNWGH 290
D W H
Sbjct: 121 DEWSH 125
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 26/170 (15%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F +D + +LW ++ L D ++WRL TS FLH
Sbjct: 113 LLIAVNVIVYALTVFQARDVMSNHNSPVFNDGVLW-PEVVVLFD--EWWRLLTSGFLHYG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ HL +N +L +G +E + G R+L VYF S A A + F PA GASGAI
Sbjct: 170 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGGAAVFVF-GDPATGTAGASGAI 228
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+GL+G+ V ++R R +I+ N+ I + I I GH
Sbjct: 229 YGLMGAILVAVLRLR-------LNPTTAIGIIVLNVIISVSIPNISLLGH 271
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 15/148 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ + A + +L L A I + +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLELAAGALKRELALQPASIAA---YDEYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E+ G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEQWLGRLRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
V + RH N+ +++ + +++ N+
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINL 177
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + HL N L +G +E G RYL +Y S +A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQEVVHLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
Y N P++GASGA++GL G+ AV + R
Sbjct: 192 YLLAAQNQPSLGASGAVYGLFGATAVLMRR 221
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 13/164 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ V ++ R ++ ++ L +I N+A G L+ GI H
Sbjct: 195 YLVIMVILRE-----RDNIRALMIMIAVNVAFGFLVPGISWQAH 233
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|291005693|ref|ZP_06563666.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 308
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 85 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 137
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + HL +N +L IG +E + G R+ VYF S + S + F P GASG
Sbjct: 138 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTAVFVFGELVQPVAGASG 197
Query: 239 AIFGLVGSFAVFIMRHR 255
A++GL+G AV +R +
Sbjct: 198 AVYGLMGGIAVAALRLK 214
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 137 LLAVNVLVYIAQFATQDKL------LLWGAKINSLID--KGQFWRLATSAFLHANIAHLM 188
L+AVNV V++ T L L+G + +D GQ WRL T+ FLH HL
Sbjct: 48 LIAVNVAVFVLTVVTAGSLNRNFDSPLFGLGALTPVDVADGQLWRLVTAGFLHIGPLHLA 107
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGS 246
N ++L IG +E + G R+ VY S + SA N P GASGA+FGL+G
Sbjct: 108 FNMFALWVIGREVEAVLGRARFTAVYGVSLLGGSAAVMLLSNPLGPTAGASGAVFGLMG- 166
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+F++ R L G+ + VI N+ I ++GI GH
Sbjct: 167 -ALFVLLRRLRLPAGQ-----VIGVIAINVVISFTLQGISWQGH 204
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|313884239|ref|ZP_07818005.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
gi|312620686|gb|EFR32109.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
Length = 229
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
++WR+ ++ F+H ++HL+ N +L +GP +E+I G ++L +Y + I + S F
Sbjct: 55 EYWRILSATFVHIGMSHLLFNMMTLYFMGPELEEILGHIKFLLIYLIAGIGGNLTSLAFN 114
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII----FNMAIGLLIKGI 285
+ GAS A+FG+ +F V + H + L ++ I N+ G L GI
Sbjct: 115 TGVSAGASTALFGMFAAFIVLAIIHPD-----SHYLWQRSRSFIILVGLNLVNGFLSPGI 169
Query: 286 DNWGH 290
DNWGH
Sbjct: 170 DNWGH 174
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 14/172 (8%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VNVLV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNVLVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G ME+ G +YL Y +S +A++++S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANSISLAVQVRTGQASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFG+VG I H L G + L +++ + G G+DN H
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDGLTN--RQLGFMVLLTLYHGFTSAGVDNMAH 178
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G ++SL G+++R T FLHA++ H+ N +L +GP +EK+ G ++L
Sbjct: 45 QSLVLLGGGVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLL 104
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y + + + +++ F +P +VGASGA+FGL G V +RN + +L A
Sbjct: 105 IYLITGVWGNLLTFIFDPNPNVVSVGASGALFGLFGVMIVSGWYNRNNF-VFRRQLIIFA 163
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
+ +FN+ L +D W H
Sbjct: 164 ALAVFNLIGNLNDPSVDIWAH 184
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +N+ VY F + +L++G + +G F+ T+ FLH N+
Sbjct: 10 TIILIIINLAVYFFVFILSHSRRTIDLYNLILIYGGISRGALLRGLFYTPLTALFLHGNM 69
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H++ N Y+L +G +E I G R++L YF S I + + +G+S AIFGLV
Sbjct: 70 LHILFNMYALFQLGYLVEGIYGMRKFLIFYFVSGIIGNLTAATMTPYITIGSSSAIFGLV 129
Query: 245 GS-FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G FA+ + ++ L L +I+ N+ GL+I I N H
Sbjct: 130 GVLFALGFKKDTPVVLKSVTGLS-LLPIILLNLMFGLMIPNISNSAH 175
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|212697360|ref|ZP_03305488.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
gi|212675552|gb|EEB35159.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
Length = 221
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|325847279|ref|ZP_08169997.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480910|gb|EGC83959.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 221
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|281203068|gb|EFA77269.1| mitochondrial substrate carrier family protein [Polysphondylium
pallidum PN500]
Length = 800
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GAK + G++WR + FLH I HL++N + +G +E+ G R + +Y
Sbjct: 587 LLNAGAKYTPAMLAGEWWRFFSPIFLHVGIFHLLMNLMTQVRVGMQLERAYGAHRIVPIY 646
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ + S F S GASGAIFG +G + R+ ++L L II
Sbjct: 647 LLCGVMGNLCSAIFLPQSVQAGASGAIFGFLGVLVTDLFRNWSLLASPFMNCCSLMFTII 706
Query: 274 FNMAIGLLIKGIDNWGH 290
+ A+GL + G+DN+ H
Sbjct: 707 ISFAVGLFLPGVDNFAH 723
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
TN ++A+NVL++ A+ Q K+ + WG L+ GQ+WR+ T+ FLH I H
Sbjct: 329 TNFIIAINVLIFCAELFWQSKIGDKDFTFIPWGGLSAPLVVGGQWWRIITANFLHMGILH 388
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA----MSYRFCNSP--AVGASGAI 240
L +N +L +G +E G +YL Y + + S A + ++ +P VGASGAI
Sbjct: 389 LGMNMLALLYLGKFVEYRLGTWKYLFAYLVAGLGSMAVITYIDLKWMTTPHITVGASGAI 448
Query: 241 FGLVGSFAVFIMR 253
G++G+ +R
Sbjct: 449 MGMLGAMGAIHLR 461
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 21/170 (12%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WRL T FLH +
Sbjct: 184 FTYLLIAVQVVMFLLLELSGGSTNTAT---LTAFGAKNNVLILEGEWWRLVTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +Y S I S S+ F + A GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIAAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ + +R + +G ++ +I+ N+ IG + GIDN GH
Sbjct: 301 GALLYLAISNRKLFFRTMGT------NIIVIILINLGIGFTVSGIDNAGH 344
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 17/155 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVN++++ Q A+ + L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 80 TYVLIAVNLVMFALQMASPNLERALGLWPPAA----ADGELYRLVTSAFLHFSVTHIAFN 135
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 136 MLALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 193
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
F++ R N+ +++ + +I N+A LI
Sbjct: 194 FVVGRKLNM------DVRSVLAIIGLNLAFTFLIP 222
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
L VY +S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LVVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VN LV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNALVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G MEK G +YL Y +S +A++ +S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANGISLAVQVRTGAASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFG+VG I H L G + L +++ + G G+DN H
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDGLTN--RQLGFMVLLTLYHGFTSTGVDNVAH 178
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 137 LLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+NV +++ F D KLL G ++ G+++RL TS FLH N HL++N
Sbjct: 162 LIAINVFIWLIMFLVLDRFSDFKLLDVGGLVHFNFVHGEWYRLITSMFLHFNFEHLLMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVF 250
SL G +E I G R L +Y + + + S F ++ + GASGAIFGL+G+ F
Sbjct: 222 LSLFIFGKIVESIVGHWRMLVIYLFAGLFGNFASLSFNTHTVSAGASGAIFGLIGAIFTF 281
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + ++ + L V++ + I + I I+ H
Sbjct: 282 MYLSKTF---NRKLIGQLLIVLVILIGISIFIPNINIVAH 318
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 137 LLAVNVLVYI---AQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A NVLV++ Q D L W A + G++WRL T+ FLH ++ H+
Sbjct: 79 LIAFNVLVFVICVGQAGGTDMLNSSLFTDW-ALFKPFVHDGEYWRLLTAGFLHFSLTHIA 137
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N SL +G +E G RY GVY +S + SA F + GASGAI+GL+G+
Sbjct: 138 ANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAAVMLFAGDLTINAGASGAIYGLMGA 197
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V ++R R + +I N+ + + + GI H
Sbjct: 198 MLVIVLRMR-------ASPVPVLSIIGLNIVLSITVPGISLAAH 234
>gi|330718407|ref|ZP_08313007.1| membrane-associated serine protease [Leuconostoc fallax KCTC 3537]
Length = 229
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDK--LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL +L+Y+ + TQ+ L+ GAK I + ++WRL T FLHA +
Sbjct: 17 TTILLFFTILIYLVEVVLSGANTQNGRFLVEMGAKWGPYIQYQHEYWRLLTPIFLHAGMM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+++N +L IGP E+ G R+YL +Y + + +SY F S +VGAS ++F L
Sbjct: 77 HIIMNMITLWFIGPLAERYFGSRKYLLLYLFGGVMGNILSYLFSPLSISVGASSSLFALF 136
Query: 245 GSFAVFIMRHR---NILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
G ++ ++ + I + + L ++ N+A GL+ ID
Sbjct: 137 GGLLIYSIQFKYDTQI----RSQGMLLGVFVVLNLASGLMSPDID 177
>gi|260583535|ref|ZP_05851283.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
gi|260158161|gb|EEW93229.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
Length = 235
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 133 WTNILLAVNVLVYIAQFATQDK-----LLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
++N+ L + ++++I L+ +GA+ N+ +I ++WR T FLH + H
Sbjct: 19 FSNLFLLIQIIMFIIMTLKGGSTNPGILVYYGARANAFIIIFHEYWRFITPIFLHIGLEH 78
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+N L G +E I G R+L +Y S I + S+ F + GAS ++FGL G
Sbjct: 79 FAMNSLFLYFFGNQLESIVGHGRFLVIYLLSGIMGNLASFAFNAQHISAGASTSLFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
RHR I + +Q++A +++ N+ L ID WGH
Sbjct: 139 LMLYLSTRHRYIYAFKELGMQYMA-LLVMNLITSLFSSTIDLWGH 182
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
L VY +S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAV 249
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAI 282
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 15 TQIILGITVAVFLIEWLMGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + I N+ + GID WGH
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTILNLVFDMFSNGIDIWGH 174
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 154 KLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L++ GA+ LI Q++R T+ F+H I H+ N Y+L +G +E++ GP ++L
Sbjct: 43 TLIVAGAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLT 102
Query: 213 VYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG-KEELQHLAK 270
+Y +S I ++ F N+ +VGASGAIFGL+G + G G +++ + K
Sbjct: 103 IYLASGIGGGILTQIFIPNAFSVGASGAIFGLIGL----------LFGAGFRDDTPPMLK 152
Query: 271 ---------VIIFNMAIGLLIKGIDNWGH 290
VI+ N+ +G GI+N+ H
Sbjct: 153 PMTGTALLPVILINLFLGFTSSGINNFAH 181
>gi|158311990|ref|YP_001504498.1| rhomboid family protein [Frankia sp. EAN1pec]
gi|158107395|gb|ABW09592.1| Rhomboid family protein [Frankia sp. EAN1pec]
Length = 381
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
SL Q++RL T+AFLH N H++VN Y+L +G +E I G R + ++ + A+ +
Sbjct: 208 SLAWDDQYYRLLTAAFLHVNYLHVLVNLYALFVLGYQLEAILGRLRLVALFVACAVGGNT 267
Query: 224 MSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+SY + +VGAS AIFG G++ V R R + + +I N A+
Sbjct: 268 LSYLVNGVSVNSVGASTAIFGFFGAYYVIARRLR-------ADTTQILILIGINFALTFT 320
Query: 282 IKGIDNWGH 290
+ ID WGH
Sbjct: 321 LSFIDRWGH 329
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|358068283|ref|ZP_09154750.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
gi|356693542|gb|EHI55216.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
Length = 206
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 137 LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVN 190
L+A+N++ + + D +L +GA+ + +G ++WRL TS F+H I H+ N
Sbjct: 12 LIALNIVFFLFLETVGSSEDADTMLRYGAEFTPYVIEGKEYWRLLTSMFMHFGIDHIANN 71
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVG 245
L IG +E+ G +YL Y I ++ +S F S + GASGA+FG++G
Sbjct: 72 MIVLFMIGDNLERALGHVKYLIFYLICGIGANIVSLFFEMLTGNYSVSAGASGAVFGVMG 131
Query: 246 SFAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGH 290
++ +R G EEL Q +A I+ ++ G + G+DN H
Sbjct: 132 GLLWAVIANR----GRLEELTSQRMAIFIVLSLYYGFISTGVDNAAH 174
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI +G++WRL T F+H+ H++ N +SL GP +E + G ++ VY + +A++
Sbjct: 50 NFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAAN 109
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL-AKVIIFNMAIG 279
+Y VG+SGAIFGL G + ++ +++ + H+ A++I + IG
Sbjct: 110 LATYYIEPLEFAHVGSSGAIFGLFGIYLYMVVFRKDL-------INHMNAQLITTILVIG 162
Query: 280 LLIKGIDN 287
L++ I++
Sbjct: 163 LVMTFINS 170
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|408679359|ref|YP_006879186.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
gi|328883688|emb|CCA56927.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 294
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLID--KGQFWRLATSAFLHAN 183
T IL+ VN+ VY+A D+L+ W + ++ G+++RL TS LH
Sbjct: 84 TKILIGVNLAVYLAVLVFGDRLVDELVLIGYAWSPALGEVVGVADGEWYRLLTSTVLHQE 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ H++ N L IG +E G RY + S ++ S ++Y N P++GASG ++
Sbjct: 144 VWHILFNVLGLWVIGGIVEPELGRIRYAALCLLSGLSGSVLAYVVAEPNQPSLGASGVVY 203
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
GL+G++ V R R H + +I +A+ LLI
Sbjct: 204 GLIGAWVVLARRRR-----------HDMRPVILFVALSLLI 233
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|170076963|ref|YP_001733601.1| rhomboid family membrane protein [Synechococcus sp. PCC 7002]
gi|169884632|gb|ACA98345.1| conserved, probable membrane protein, rhomboid family
[Synechococcus sp. PCC 7002]
Length = 550
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 32/178 (17%)
Query: 135 NILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+AVN LV++ A + +L G I + + +G++WRL T+ F+H +AHL++
Sbjct: 346 SVLVAVNCLVFLGAIAVSSPENPEAMLQGGGFIPNQVLQGEWWRLFTANFIHVGLAHLLM 405
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS---------AMSYRFCNSPA------- 233
N +L +GP EK G RYL VY S ++ A + + PA
Sbjct: 406 NMATLALLGPFAEKHLGRSRYLLVYLGSGFGATVTLFGLVLLAQGFDYEAFPAWLAYLTT 465
Query: 234 ---------VGASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAKVIIFNMAIGL 280
VGASG+I G++G+ AV + + R L + + + +I+ A+ L
Sbjct: 466 EIRYGYQVWVGASGSIMGMIGAIAVVLWQGWQRFHLEAAGRQFRLICLIIVIQFAVDL 523
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +N+ V+ T + ++ +GA + L +G++WR T+AF+H H++
Sbjct: 12 TTVLMIINIAVFAIMTLTGGSESIENIVRFGAMVKPLFYQGEWWRALTAAFIHIGFFHIL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
N Y L +IGP E++ G +L +Y + + + +Y F N+ + GAS +++G+ G
Sbjct: 72 FNMYFLYNIGPLFERLYGSINFLIIYILAGVLGNLFTYAFGGANTVSAGASTSLYGMFGL 131
Query: 247 FAVFIMRHRNILGGGKEELQHLA----KVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLL 302
++ +++ E L+ L +I+ N+ LL GI GH M G + L
Sbjct: 132 AIGLMINYKD-----DEILRGLGASFISIIVINIVYSLLAPGIGIQGH-MGGFLAGVLLA 185
Query: 303 GI 304
GI
Sbjct: 186 GI 187
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 217
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 6 TQIILGITVAVFLIEWLIGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 65
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 66 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAFLT 125
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + I N+ + GID WGH
Sbjct: 126 IGESFWENPVI----RQLTNQFLLLTILNLVFDMFSNGIDIWGH 165
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRH 254
M +
Sbjct: 265 MMY 267
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRH 254
M +
Sbjct: 265 MMY 267
>gi|148906261|gb|ABR16286.1| unknown [Picea sitchensis]
Length = 383
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++ + Q WRL T +LHA + HL+ N SL IG +E+ G R VY SA S
Sbjct: 114 QKVVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGS 173
Query: 223 AMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N +VGASGA+FGL+G+ ++ + I L L +I+ N+A GLL
Sbjct: 174 VLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLL 233
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 234 -PHVDNFAH 241
>gi|421776991|ref|ZP_16213591.1| peptidase, S54 family protein [Escherichia coli AD30]
gi|408457883|gb|EKJ81674.1| peptidase, S54 family protein [Escherichia coli AD30]
Length = 265
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y C+S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFDGLISACYALCDSEQIVISVGASGAIMGIAGA 142
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
++WRL TS FLH +I H+ VN SL +G +E I G R+L VY + SA
Sbjct: 41 EYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPILGTARFLLVYLVALFGGSAAVTLLS 100
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ GASGAI+GL+G+ V +++ K + +I N+ I + + GI
Sbjct: 101 GTNTATAGASGAIYGLMGAMLVIVLKF-------KAPAGQVIAIIAVNIFISISVPGISL 153
Query: 288 WGH 290
GH
Sbjct: 154 VGH 156
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L +GAK N LI G++WRL T FLH + HL+ N ++L S+G +EKI G R+L +Y
Sbjct: 211 LTAFGAKNNGLILDGEWWRLITPMFLHIGLTHLLFNTFALWSVGAAVEKIYGSWRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S S S+ F + A GASGAIFG +G+ + +R + + ++ +I+
Sbjct: 271 FISGTFGSIASFVFNTAIAAGASGAIFGCLGALLYLAISNRKLF--FRTMGTNIIVIILI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IG + GIDN GH
Sbjct: 329 NLGIGFTVSGIDNAGH 344
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
T +GH T+ + I R T IL+ +N+ V+IA + L+L GA
Sbjct: 57 TGSGTGHAPTAAMPRTLAGGSIAADPRLLTKILIGINLAVFIAVKVHESLLTDLVLLGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++R+ TS F H I H+ N SL +G +E G RYL +Y
Sbjct: 117 PPAPYAPTQGVAGGEWYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
S +A SA++Y N+ +GASGAIFGL G+ AV + R
Sbjct: 177 VSGLAGSALAYLLASPNTATLGASGAIFGLFGATAVLMRR 216
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 137 LLAVNVLVYIAQ-----FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+L N +++ F+T+D LL +GA+ +D G ++RL T+ F+H I
Sbjct: 9 ILLFNAFIFVMMTFSGVFSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGIL 68
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N Y+L G +E I G ++L YF + I + ++ F ++ +VGASGAIFGL+
Sbjct: 69 HILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLI 128
Query: 245 G 245
G
Sbjct: 129 G 129
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSENSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + + + +S N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGVVGNILSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIG 279
G+F + R+++ + + L I+F+ A+
Sbjct: 139 YGAFLYVALFQRSLMDDASRKTLYTLLGFGILFSFAVA 176
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 42 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 100
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 101 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 160
Query: 254 HRN 256
+N
Sbjct: 161 SKN 163
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|445067421|gb|AGE14563.1| rhomboid [Triticum aestivum]
Length = 323
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA + HL+ N SL +G +E+ G
Sbjct: 92 ATLQKLGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLVGLRLEQQFGF 147
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S MS F ++ +VGASGA+FGL+G+ + + I L
Sbjct: 148 VRVGVIYLVSGVGGSVMSSLFIRDNISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 207
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 208 TLLFVIAVNLAIGIL-PHVDNFAH 230
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +NV++++ ++ KLL G ++ + G+++RL +S FLH N H++
Sbjct: 160 TYTLIGINVIIWLLMILFFNRFSELKLLDVGGLVHFNVVHGEWYRLISSIFLHYNFEHIL 219
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R L ++ S + ++ S F ++ +VGASGAIFGL+GS
Sbjct: 220 MNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFASLSFNIDTISVGASGAIFGLIGSL 279
Query: 248 AVFI----MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
F+ + R ++G Q L ++I + I L + I+ W H
Sbjct: 280 FGFMYISKIFERKLVG------QLLIALVIL-IGISLFMDNINVWAH 319
>gi|452959086|gb|EME64427.1| rhomboid family protein [Rhodococcus ruber BKS 20-38]
Length = 308
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T IL+A+N ++ A ++ LW I + + ++ R+ S FL
Sbjct: 86 TYILIALNTAIFAITAAQSGSVMNNERSSSLFFEWALWPPMIAA---RDEYIRVLGSGFL 142
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
H + HL VN ++L IG E + G RYL VY S + SA ++ GASGA
Sbjct: 143 HFGVLHLAVNMFALYVIGRDTELVLGRLRYLAVYLVSILGGSAAVMLLETDAVTAGASGA 202
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+FGL+G+ AV +MR R + LA +++ N+ I + I GI W
Sbjct: 203 VFGLLGAQAVILMRLR------RSPAPVLA-IVVLNVVISITIPGISLW 244
>gi|172038646|ref|YP_001805147.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|354554015|ref|ZP_08973320.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
gi|171700100|gb|ACB53081.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|353553694|gb|EHC23085.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
Length = 525
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 132 QWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
Q T L+ +N LV++A+ F T ++L GA + + KG+FWRL T+ FLH
Sbjct: 330 QITLCLIILNSLVFLAEIGFGGTENFKTLEQL---GALVPMFVWKGEFWRLITANFLHYG 386
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSY--RFCNSP---AVGAS 237
H + N L IG +E + +Y+ VYF S + S A SY + N VGAS
Sbjct: 387 WGHFLTNMLGLYIIGNLVESLSNKSKYIIVYFFSGVGSMFAFSYIALYANKVDYILVGAS 446
Query: 238 GAIFGLVGSFAVFIMRH--RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+I GL+GS +R +N ++ L + VI F + LLI + H
Sbjct: 447 ASIMGLLGSLTAIFLRKWLQNKSSINRKRLLIMVTVITFQLMSDLLIPQVSMLSH 501
>gi|383316784|ref|YP_005377626.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043888|gb|AFC85944.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 216
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 18/140 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKG--------QFWRLATSAFLH 181
T +L+A+NVLVY+ Q D LL LW + + + W+L + AF+H
Sbjct: 9 TKVLMALNVLVYLLQQVWHDPLLVHAALWPLGPDQMAQTATGVVAVGFRPWQLISYAFMH 68
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS----SAIASSAMSYRFCNS--PAVG 235
++ H++ N +L G T+E+ G R++ YF+ +A+A A++ F P +G
Sbjct: 69 GSVTHILFNMLALWMFGGTIERTLGTPRFVIYYFACLVCAALAQLAVTAWFLPGFYPTLG 128
Query: 236 ASGAIFGLVGSFAVFIMRHR 255
ASGA+FGL+ +F VF R +
Sbjct: 129 ASGAVFGLLLAFGVFYPREK 148
>gi|375088668|ref|ZP_09735006.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
gi|374561633|gb|EHR32972.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
Length = 232
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L++ GAK N LI ++WRL T FLH + HL+ N + +G +E I G R+
Sbjct: 41 ESLIIMGAKFNELIIYNNEWWRLITPIFLHIGVPHLLFNMLVVYFLGQQIEFIFGHVRFA 100
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK- 270
+Y S + +A S+ F S + GAS AIFGL S V ++ EL LA+
Sbjct: 101 LLYLFSGLMGNAFSFAFNTSLSAGASTAIFGLFVSTIVLSKLFPHV-----RELGMLARQ 155
Query: 271 ---VIIFNMAIGLLIKGIDNWGH 290
+I N+ + G+DN GH
Sbjct: 156 YGMLIFLNIVFSFMSGGVDNMGH 178
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 220
Query: 252 MRH 254
M +
Sbjct: 221 MMY 223
>gi|167748326|ref|ZP_02420453.1| hypothetical protein ANACAC_03070 [Anaerostipes caccae DSM 14662]
gi|167652318|gb|EDR96447.1| peptidase, S54 family [Anaerostipes caccae DSM 14662]
Length = 280
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A ++L WGA +G+ +RL TS FLH HL N
Sbjct: 98 QATAVILTINIFMYLWS-AASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 156
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 157 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 216
Query: 246 SFAVFIMRHR----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++++R GGG +A +I ++ G G+DN H
Sbjct: 217 AMLWILIKNRGYQKEFYGGG------VALMIAGSLYHGFSTMGVDNAAH 259
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIG 129
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|317472135|ref|ZP_07931467.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
gi|316900539|gb|EFV22521.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A+ + +L WGA +G+ +RL TS FLH HL N
Sbjct: 127 QATAVILTINIFMYLWSAASTE-ILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 185
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 186 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 245
Query: 246 SFAVFIMRHR----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++++R GGG +A +I ++ G G+DN H
Sbjct: 246 AMLWILIKNRGYQKEFYGGG------VALMIAGSLYHGFSTMGVDNAAH 288
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIG 129
>gi|389861756|ref|YP_006363995.1| Rhomboid Peptidase S54 [Modestobacter marinus]
gi|388483958|emb|CCH85490.1| Rhomboid Peptidase S54 [Modestobacter marinus]
Length = 246
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 130 GRQW---TNILLAVNVLVYI-----AQFATQDKLLLWG-------AKINSLIDKGQFWRL 174
GR+W T L+ +NV +++ QD L + A++ + G +WR
Sbjct: 34 GRRWGPVTLTLIGINVAMFLLTAVLTGIGGQDPLQNYRNELFQDLAQVPVFVQIGDWWRP 93
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-- 232
T+AFLH + HL +N SL G +E++ G RYL VY S IA A + + +P
Sbjct: 94 FTAAFLHYGVLHLGLNMLSLLVFGSELERLLGRGRYLVVYLVS-IAGGAAAIQLLGTPFG 152
Query: 233 -AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GAS AI+GL+G+F V ++ K++L+ L ++ N+ I L G+ GH
Sbjct: 153 QVAGASTAIYGLMGAFGVVLVHQ-------KQDLRGLLVLLGINLVISFL-PGVSLIGH 203
>gi|328866134|gb|EGG14520.1| beta-lactamase family protein [Dictyostelium fasciculatum]
Length = 490
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ LL GAK LI G++WR + FLH I HL++N + IG +E+ G R
Sbjct: 271 SASTLLNVGAKYAPLILYGEWWRFFSPIFLHVGIFHLLMNLGTQLRIGMQLERSYGAHRI 330
Query: 211 LGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+ +Y + + S F S VGASG+IFG +G + R+ + L L
Sbjct: 331 VPIYLLCGVMGNLCSSIFLPLSVQVGASGSIFGFLGVLLADLARNWSALASPYLNCCSLV 390
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
II + A+GL + G+DN+ H
Sbjct: 391 FTIITSFAVGLFLPGVDNFAH 411
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|383636302|ref|ZP_09950708.1| hypothetical protein SchaN1_02019 [Streptomyces chartreusis NRRL
12338]
Length = 296
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 115 EGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA--- 160
GT H TA I R T IL+ +N+ V+IA + + L+L GA
Sbjct: 59 SGTGHAPTAAMPRTIAGGAVTADPRLLTKILIGINLAVFIAVQVHESLLNDLVLLGAWPP 118
Query: 161 ---KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+ G+++RL TS F H I H+ N SL +G +E G RYL +Y S
Sbjct: 119 APFTPTQGVAGGEWYRLVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYLVS 178
Query: 218 AIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
+A S ++Y N+ +GASGAIFGL G+ AV + R
Sbjct: 179 GLAGSTLAYLLTSPNTATLGASGAIFGLFGATAVLMRR 216
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q ++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSESSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-----SPAVGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + +S N + +VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYVLLYLVTGIVGNILSIAHYNMMTETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIG 279
G+F + R+++ + + L I+F+ A+
Sbjct: 139 YGAFLYVALFQRSLMDDASRKTLYTLLGFGILFSFAVA 176
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 7 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 65
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 66 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 125
Query: 254 HRN 256
+N
Sbjct: 126 SKN 128
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWG--AKINSLIDKG--QFWRLATSAFLHAN 183
T +L+ +NV V+ +F +Q +L+ + ++ ++ Q++RL T+ FLH
Sbjct: 91 TKVLIGLNVAVFALVLSLGERFVSQLELIGYAFSPQLGEIVGVAHDQWYRLLTAVFLHQE 150
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H++ N L +G +E G RR+L +Y S + S ++Y N P++GASGAIF
Sbjct: 151 LSHILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLVAEPNQPSLGASGAIF 210
Query: 242 GLVGSFAVFIMR 253
GL+G+F V R
Sbjct: 211 GLMGAFVVLARR 222
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|326532882|dbj|BAJ89286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W ++ + Q WRL T +LHA + HL+ N SL +G +E+ G
Sbjct: 94 ATLQKLGALVW----EKVVHEQQGWRLVTCIWLHAGVVHLLANMLSLVLVGLRLEQQFGF 149
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S MS F ++ +VGASGA+FGL+G+ + + I L
Sbjct: 150 VRVGVIYLVSGVGGSVMSSLFIRDNISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 209
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGH 290
L VI N+AIG+L +DN+ H
Sbjct: 210 TLLFVIAVNLAIGIL-PHVDNFAH 232
>gi|373953754|ref|ZP_09613714.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
gi|373890354|gb|EHQ26251.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
Length = 554
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL WG + + + +GQ+WRL T+ FLH + H+++N Y L +G +E + G +RY Y
Sbjct: 444 LLKWGGNLRTNVIQGQYWRLLTNIFLHGGLMHVLMNMYGLLFVGIFLEPLMGVKRYTLAY 503
Query: 215 FSSAI-ASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ I AS A + + ++GASGAIFG+ G F
Sbjct: 504 IGTGILASIASIWWHPATVSIGASGAIFGMYGIF 537
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WRL + LH+ H++ N +SL GP +E++ G R++ +Y ++
Sbjct: 47 AGVNLYIVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGA 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
A++ + VGASGAIFGL G FA I+ + +L +E Q + + I +
Sbjct: 107 AANIATLLLEPLTYIHVGASGAIFGLFGYFAAIIVFRKELL--SRENSQIILTITIIGVI 164
Query: 278 IGLLIKGIDNWGH 290
+ L I+ H
Sbjct: 165 MTFLQPNINVTAH 177
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
L VY S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LIVYIVSGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 20/170 (11%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ +N++V++ + + L+ +GA L+ G++WRL T++F+H H++
Sbjct: 14 TSVLMVINIIVFVLMSLSGGSENIENLIRFGANSKILVAHGEWWRLITASFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVG 245
N Y S+GP E++ G +L +Y S I + +S+ SP + GAS +++G++G
Sbjct: 74 FNMYFFYSLGPIFERLFGSFNFLIIYLISGIFGNLLSFA-LGSPYTVSAGASTSLYGMLG 132
Query: 246 SFAVFIMRHRNILGGGKEEL-----QHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +RN +E+ +++ N+ LL G+ +GH
Sbjct: 133 LAIGLMATYRN------DEIIRSFGASFISIVVINVVYSLLAPGVGVYGH 176
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDK-----LLLWGAKINSL-IDKGQFWRLATSAFLHAN 183
+ + NI L+A+NVL ++ AT ++ GA L I++G+++RL TS F+H
Sbjct: 9 KAYVNIGLIALNVLYFLFLEATGSSENTSFMVAHGAMYAPLVIERGEYYRLITSVFMHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-----RFCNSPAVGASG 238
I+H+M N L +G +E+ G +YL Y + ++ +S + N + GASG
Sbjct: 69 ISHIMNNMLILFILGDNLERALGHIKYLFFYLICGVGANIVSMIVNLGEYRNVVSAGASG 128
Query: 239 AIFGLVGS--FAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFG++G +AV I R R E+L + L +I+ ++ G G+DN H
Sbjct: 129 AIFGVIGGLLYAVIINRGR------LEDLSTRQLVVMIVCSLYFGFTSTGVDNAAH 178
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH + H
Sbjct: 14 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ +N SL +G +E G R+L VYF + SA M + N + GASGAI+GL+
Sbjct: 74 IALNMISLYILGRDLETALGHSRFLMVYFIALFGGSAAVMLFEAGNVRSAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ V +++ R G + +I+ N+ + + GI H
Sbjct: 134 GAMLVIVVKARISPTG-------VITIIVINLVFSVTMPGISLAAH 172
>gi|284043226|ref|YP_003393566.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283947447|gb|ADB50191.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 274
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHA 182
T +L+A++VL Y+ + A+ ++ +LWG I + + WR+ TS FLHA
Sbjct: 62 TYVLIAISVLAYVGELASGGRINDAGGTLYENGVLWGPYIA---QRDEIWRMVTSGFLHA 118
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIF 241
++ H++ N + + +G +E + G R++ +YF++ + S A+ +P +GASGA F
Sbjct: 119 SLFHILFNMWFIWVLGRMLEPVLGHVRFVTLYFTALLCGSFAVLLLEPTAPTIGASGAAF 178
Query: 242 GLVGSFAVFIMRHRNI 257
GL+G+ A+ R R +
Sbjct: 179 GLLGA-AIVEARARGL 193
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 134 TNILLAVNVLVYIAQFA-TQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+IL+A++V+++ F LW I N+ + G++WRL + LH H+++N
Sbjct: 18 VSILVALHVVIWFTFFLRIPIAEPLWEKMIGFNAAVQNGEYWRLVSPLVLHVRFEHMIIN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV----GASGAIFGLVGS 246
SL GP +EK+ G ++L +Y S I ++ + F PA+ GASGAIFGL G
Sbjct: 78 SISLILFGPALEKMLGKSKFLLLYIGSGICANIAT--FFVLPAMYSHAGASGAIFGLFGM 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
+ I+ R+I+ E QH A+++ + I L I
Sbjct: 136 YGYLIVFCRDII-----ETQH-ARLLFAVICISLFIS 166
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ I++ + VLV+I Q L L+ + SL+ + W L TS FLHA +AHL N
Sbjct: 74 YAYIIIGITVLVFILQLLLDPWLTGLFDLSMGSLLSRP--WGLVTSMFLHAGLAHLFFNM 131
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAI-ASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
+L GP +E+ + +L +YF S I A + F S +GASGAIFG++G+ V
Sbjct: 132 LALFFFGPLLERRIESKGFLALYFGSGILAGLVQVFIFPTSAVIGASGAIFGVLGALTVL 191
Query: 251 I 251
+
Sbjct: 192 M 192
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 48 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 106
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 107 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 164
Query: 252 MRH 254
M +
Sbjct: 165 MMY 167
>gi|294845|gb|AAA02747.1| membrane protein [Saccharum hybrid cultivar H65-7052]
Length = 325
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 106 NKIVHQDQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 225
Query: 281 LIKGIDNWGH 290
L +DN+ H
Sbjct: 226 L-PHVDNFAH 234
>gi|422015063|ref|ZP_16361669.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
gi|414100115|gb|EKT61738.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
Length = 291
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 35/192 (18%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+ +Y+ Q FA+ +D LLL+GA + L G +WR S LH+N H
Sbjct: 25 TLILVLLNIGIYLYQLSFASPLESREDNLLLFGANVYQLSLTGDWWRYPISMVLHSNSVH 84
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP--------- 232
L NC +L IG E+ G R L +Y S I ++ S Y N+
Sbjct: 85 LGFNCLALFVIGIECERAYGKFRLLAIYIISGIGAALFSAYWQYYETLNAANSSNNVWQM 144
Query: 233 --------AVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGL- 280
VGASGAI GL + +++++ N IL +E+ + II +A+ L
Sbjct: 145 DSTIYITIGVGASGAIMGLAAASVIYLLKAINSPTILPAIREKQKRQLYNIIAMIALTLI 204
Query: 281 --LIKGIDNWGH 290
L G+DN H
Sbjct: 205 NGLQSGVDNAAH 216
>gi|149922613|ref|ZP_01911041.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149816499|gb|EDM75996.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 368
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 145 YIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
Y+ F + L WGA N ID GQ+WRLA++ FLH + HL +N ++ S+G E
Sbjct: 50 YLVLFEDLELLEAWGALTPANIWID-GQWWRLASAGFLHGSWLHLGLNMLAMWSVGRWTE 108
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAV 249
I GP R L ++ +S++ S + SP VGAS IFG+ G V
Sbjct: 109 SIWGPWRQLALFMASSLGGCLASVAWAESPLVVGASAGIFGIAGGLLV 156
>gi|407278578|ref|ZP_11107048.1| rhomboid family protein [Rhodococcus sp. P14]
Length = 259
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T IL+A+N ++ A ++ LW I + + ++ R+ S FL
Sbjct: 37 TYILIALNTAIFAITAAQSGSVMNNERSSSLFFEWALWPPMIAA---RDEYIRVLGSGFL 93
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASG 238
H + HL VN ++L IG E + G RYL VY S + SA + + AV GASG
Sbjct: 94 HFGVLHLAVNMFALYVIGRDTELVLGRLRYLAVYLVSILGGSA-AVMLLETGAVTAGASG 152
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
A+FGL+G+ AV +MR R + LA +++ N+ I + I GI W
Sbjct: 153 AVFGLLGAQAVILMRLR------RSPAPVLA-IVVLNVVISITIPGISLW 195
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
L VY +S + + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 98 LIVYIASGLIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
+L +V ++ ++ + + L A IN I G++WRL T F+H AHL+ N +SL
Sbjct: 38 LLFSVALVPFLPEILVYEHL----AGINLYIFNGEWWRLITPIFVHLGFAHLLFNSFSLI 93
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMR 253
P +E++ G ++ +Y + IA++ +Y VGASGAIFGL G + +
Sbjct: 94 LFAPPLERMLGKFKFTIIYLTCGIAANIATYFLKPLTYNHVGASGAIFGLFGIYVGMTLF 153
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLI 282
H++++ ++ VII + IGL++
Sbjct: 154 HKHLISTQNKQ------VIIPIVVIGLVM 176
>gi|336319156|ref|YP_004599124.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
gi|336102737|gb|AEI10556.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
Length = 299
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
T +A+ V+ Y+ Q+ W K + L + WR TSAFLH+ +I H+++N
Sbjct: 71 TLAFIALCVVAYLGQWTVDGFTTDW--KYSPLRGHAEPWRFLTSAFLHSPGSIFHIVLNM 128
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASS-------AMSYRFCNSPAVGASGAIFGLV 244
+L ++GP +E G RY +Y SAI S A+ + S VGASGA+FGL
Sbjct: 129 VALWTVGPYLEVQLGRVRYATLYLLSAIGGSVVVLLVAALGWSDWYSGVVGASGAVFGLF 188
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G A F++ R+ Q + VI NM ++ GI GH
Sbjct: 189 G--AAFVVMWRS-----GHPAQGMLGVIGVNMVFSFVVPGISWQGH 227
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 M 252
+
Sbjct: 285 L 285
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ++RL T+ FLH + HL++N Y+L +G T+E GP R+L +Y + + + +
Sbjct: 134 IADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GAS AIFGL A+F++ R ++ + +++ N+ L +
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRRM-----GRDVSQVLPILVINLVFTLTVP 246
Query: 284 GIDNWGH 290
GI GH
Sbjct: 247 GISIPGH 253
>gi|433601853|ref|YP_007034222.1| membrane protein [Saccharothrix espanaensis DSM 44229]
gi|407879706|emb|CCH27349.1| membrane protein [Saccharothrix espanaensis DSM 44229]
Length = 286
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 18/157 (11%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL--------- 165
EG S + RT F+G +++ L+A VL+ + A + G+ N+
Sbjct: 55 EGRSTVRRGRT--FVGAEFSPKLIATPVLIVLNVLAYAVTAVQAGSVSNNAASPLFADFV 112
Query: 166 -----IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
I G++WRL TS FLH AHL +N +L +G +E G R+L +Y S +
Sbjct: 113 LWPVGIFYGEWWRLLTSGFLHYGPAHLGLNMIALYVLGRELEPTFGKIRFLALYLVSLLG 172
Query: 221 SSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHR 255
Y F N+P GASGA++GL+G+ V +++ +
Sbjct: 173 GGVAVYLFGHVNTPVAGASGAVYGLMGAMLVAVLKLK 209
>gi|294501246|ref|YP_003564946.1| membrane endopeptidase [Bacillus megaterium QM B1551]
gi|294351183|gb|ADE71512.1| membrane endopeptidase [Bacillus megaterium QM B1551]
Length = 506
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 180 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPVILHIGLLHL 239
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 240 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 299
Query: 248 AVFIMRHR-----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI R +G +I+ N+ G + +DN GH
Sbjct: 300 -LFIARTNPRFFFRTMGSS------FIVIIVINLIFGFVAPNVDNAGH 340
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +GQ++RL T+ FLH + HL++N ++L +G ++E GP R+ +Y + + + +
Sbjct: 134 IAEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F NS GAS A+FGL FA I+ R + ++ + +++ N+ L +
Sbjct: 194 YLFSAQNSATAGASTAVFGL---FAALIIIERKL----GRDISQVIPILVINLVFTLTVP 246
Query: 284 GIDNWGH 290
GI GH
Sbjct: 247 GISIPGH 253
>gi|317500904|ref|ZP_07959115.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089196|ref|ZP_08338098.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439355|ref|ZP_08618969.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897702|gb|EFV19762.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405748|gb|EGG85277.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016163|gb|EGN45955.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 200
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHL 187
T +L+ +NV V++ D +L GA I +GQ ++R+ T FLH I HL
Sbjct: 10 TTVLIVINVAVFLILSMLGDTEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFG 242
M N L ++G +E G R++ +YF S I + +S S + GASGA+FG
Sbjct: 70 MNNMVMLGALGWNLELEIGKLRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGAVFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ ++ +R L G+ + + +++ ++ GL G+DN H
Sbjct: 130 LMGALLYVVIANRGRL--GQLSGRGMIFMVVLSLYFGLTSSGVDNMAH 175
>gi|427392549|ref|ZP_18886554.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
gi|425731229|gb|EKU94048.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
Length = 228
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 10/143 (6%)
Query: 153 DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ +GAK N ++I Q+WRL T FLH +AH++ N + +G +E G +Y
Sbjct: 41 EVLIQYGAKFNFAIIYFNQWWRLITPMFLHIGLAHILFNLLIVYYLGSNLEYFFGHFKYA 100
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK- 270
+Y I + S+ F S + GAS AIFGL S + N + ++Q++A
Sbjct: 101 LLYLLGGIMGNIFSFAFNISISAGASTAIFGLFMSTIALSRIYPN-----RIQIQNIASQ 155
Query: 271 ---VIIFNMAIGLLIKGIDNWGH 290
+I N+ IG+L GIDN GH
Sbjct: 156 YGLLIGLNIFIGILSTGIDNMGH 178
>gi|356559853|ref|XP_003548211.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]
Length = 329
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++ Q WRL T +LHA + HL N SL IG +E+ G R +Y S S
Sbjct: 109 DDVVNHHQAWRLVTCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 169 VLSSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLLFIIVINLAIGML 228
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 229 -PHVDNFAH 236
>gi|218679679|ref|ZP_03527576.1| hypothetical protein RetlC8_12631 [Rhizobium etli CIAT 894]
Length = 376
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLAV V VY + A + L+L G S+++
Sbjct: 174 FDGARYPVF-----TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLVLGGTFRPSIVE 228
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+HA I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 229 GAEWWRLFTAPFMHAGIVHLASNCFCLWMAGMLFERLIGWRWFAAIFFASALGGSIASVW 288
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 289 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 319
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVYA---YLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGH 290
I GH
Sbjct: 171 PSISLSGH 178
>gi|67925260|ref|ZP_00518623.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
gi|67852903|gb|EAM48299.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
Length = 193
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL TS FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITSNFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-SAMSYRF-----CNSPAVGASGAIFG 242
+N +L IG +EKI Y+ +YF S I S SA SY + VGAS ++ G
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGSMSAFSYLAHYTGKLDYILVGASASVMG 121
Query: 243 LVGSFAVFIMR 253
LVGS +R
Sbjct: 122 LVGSLTAIFLR 132
>gi|297582849|ref|YP_003698629.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297141306|gb|ADH98063.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 255
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+I L + VY F +++ G N I G++WRL T FLH + H+M N ++
Sbjct: 22 ISICLFFYIWVYWFGFLGGNEIFALGVGWNFAIAMGEYWRLVTPIFLHGGLMHVMFNSFA 81
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L GP +E G R++ ++ +A+ ++ +++ N VGASGAI+GL G + +
Sbjct: 82 LFLFGPWLEAKLGISRFVMLFLGTAVIANIVTFLLQGPNYSHVGASGAIYGLFGVYLYIV 141
Query: 252 MRHRNIL 258
+ ++++
Sbjct: 142 LLRKDLM 148
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 136 ILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+V++ F +D + +LW +++ ++WRL TS FLH
Sbjct: 97 LLIAVNVVVFVLTAFQARDAMNNYNSPVFAEGVLWP---QAVVAFDEWWRLITSGFLHYG 153
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIF 241
+ HL +N +L +G +E + G R+L VYF S + A + F + GASGAI+
Sbjct: 154 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFVSMLGGGAAVFAFGAPETSTAGASGAIY 213
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G+ V ++R R +I+ N+ + + I I GH
Sbjct: 214 GLMGAMLVAVLRLR-------LNPTTAIGIIVLNLILTVSIPNISLLGH 255
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N ++L +G ++E GP R+L +Y + + +
Sbjct: 134 IVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F N+ GAS AIFGL FA I+ R + ++ + V++ N+ L +
Sbjct: 194 YLFSAENATTAGASTAIFGL---FAALIVIERRM----GRDISSVLPVLVINLVFTLTVP 246
Query: 284 GIDNWGH 290
GI GH
Sbjct: 247 GISIPGH 253
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 30/157 (19%)
Query: 121 DTARTNLFIGRQWTNI--LLAVNVLVYIAQFATQ-------------DKLLLWGAKIN-S 164
DT R +LF R + L+ +NV+++I F Q D + L+GA +
Sbjct: 10 DTVRNHLFDQRSAVMVHWLILLNVVIFILGFFFQVDIPRNIYPPVHLDLIQLYGAYSEYT 69
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+G+ WRL T FLHAN+ H+M N +L GP +E+ G R+L Y +A++
Sbjct: 70 CFHEGELWRLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAAALF 129
Query: 225 S------------YRFCNSPAVGASGAIFGLVGSFAV 249
S +RF P VGASG+I+G++ + AV
Sbjct: 130 SSLLGYMGFFDPEWRFI--PMVGASGSIYGIMAACAV 164
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I +++ L L +GA IN Q WR ++ FLHA HL
Sbjct: 19 TCLILLINIVMFIVLTVHGGSENSLTLIRYGALINEEPFTAQLWRYVSAMFLHAGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY +Y ++ I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYALLYLATGIVGNVMSIAHYNMAAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIG 279
G+F + R ++ + + L I+F+ A+
Sbjct: 139 YGAFLYVALFQRTLMDEASRKTLYTLLGFGILFSFAVA 176
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVYA---YLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGH 290
I GH
Sbjct: 171 PSISLSGH 178
>gi|221502248|gb|EEE27986.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 283
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|74786305|sp|Q695T9.1|RHBL2_TOXGO RecName: Full=Rhomboid-like protease 2
gi|47500377|gb|AAT29066.1| rhomboid-like protease 2 [Toxoplasma gondii]
Length = 283
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|284047014|ref|YP_003397354.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283951235|gb|ADB53979.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 228
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 135 NILLAVNVLVYIAQFA------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHL 187
+L+A+NV + Q A T D L +N +D G ++R+ TSAFLHAN AHL
Sbjct: 25 GVLVALNVGAFAIQLASSPFDDTLDGSLAEHGGLNGWEVDHGDWYRIFTSAFLHANAAHL 84
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
N +L +G + GP R + VY + + S+ F + VGASGAIFGL G
Sbjct: 85 FGNLVALVILGGVLTLAAGPLRMVLVYATGLLGSAFSVLAFAPETLTVGASGAIFGLAGG 144
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V R R +L L A ++ ++ L + GI GH
Sbjct: 145 ALVVGWRQRRVL-----LLIFAAGWTVYALSSTLFVPGISQAGH 183
>gi|384044908|ref|YP_005492925.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
gi|345442599|gb|AEN87616.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
Length = 481
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 155 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPIILHIGLLHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 215 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 274
Query: 248 AVFIMRHR-----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI R +G +I+ N+ G + +DN GH
Sbjct: 275 -LFIARTNPRFFFRTMGSS------FIVIIVINLIFGFVAPNVDNAGH 315
>gi|56962578|ref|YP_174304.1| hypothetical protein ABC0804 [Bacillus clausii KSM-K16]
gi|56908816|dbj|BAD63343.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N+ I G++WRL T FLH + HL N ++L P +E + G R+++ +Y S
Sbjct: 45 GMGWNAAILAGEYWRLVTPIFLHGGLFHLFSNMFALLIFAPALEVMLGKRKFVTIYLISG 104
Query: 219 IASSAMSYRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ ++ + F SP+ VGASG+IFGL G F + ++++ + Q + +I+ +
Sbjct: 105 VLANVAT-LFLESPSYTHVGASGSIFGLFGVFLFMYLYRKDLM--DSQSGQTILPIIVIS 161
Query: 276 MAIGLLIKGIDNWGH 290
+ + + I+ + H
Sbjct: 162 VIMTFVGSHINIFAH 176
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASG IFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGTIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|377831625|ref|ZP_09814595.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
gi|377554419|gb|EHT16128.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
Length = 220
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 150 ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
+T ++L+ +GA+ LI G++WRL T F+H + HL+VN +L IG +E + G
Sbjct: 31 STNSQVLIEFGARYTPLIKAGEWWRLITPGFVHIGLTHLVVNSVTLYFIGMYIENLFGHW 90
Query: 209 RYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
R+L +Y S + + S F S + GAS IFGL G+F + + + + +
Sbjct: 91 RFLAIYLVSTLMGNLASAVFLPQSISAGASTGIFGLFGAFLMLGLAFWD-----EPAIHS 145
Query: 268 LAK----VIIFNMAIGLLIKGID 286
LA +++ N+ +L+ GID
Sbjct: 146 LAHQFLILVLLNLGTDILVPGID 168
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA + ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 97 LLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLV 156
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 157 YLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 216
Query: 273 IFNMAIGLLIKGIDNWGH 290
+ N+A+G+L + +DN+ H
Sbjct: 217 VVNLALGILPR-VDNFAH 233
>gi|259046463|ref|ZP_05736864.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
gi|259036879|gb|EEW38134.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
Length = 232
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 133 WTNILLAVNVLVYI----AQFATQDKLLL-WGAKIN-SLIDKGQFWRLATSAFLHANIAH 186
+T + LA+ ++I A +T ++L+ +GAK N +I + +++R T FLH + H
Sbjct: 22 FTYLFLAIQAALFIVMTLAGGSTNGQVLVNFGAKFNPYIIYQHEYYRFLTPIFLHIGLEH 81
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
++ N L IG ME G R+L VY S I + S+ F +S + GAS A+FGL+G+
Sbjct: 82 ILFNSVFLYMIGRQMEYEIGHWRFLVVYLLSGIMGNLASFAFSSSISAGASTALFGLMGA 141
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V++ R + ++ A +I+ N+ +G + +DN+GH
Sbjct: 142 -VVYLSRKHGYIRSFRQMGMQYAGLIVINIVLGFINSAVDNYGH 184
>gi|195622898|gb|ACG33279.1| membrane protein [Zea mays]
Length = 226
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 7 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 66
Query: 223 AMSYRFCNSP--AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F + +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 67 VLSALFLRNSYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 126
Query: 281 LIKGIDNWGH 290
L +DN+ H
Sbjct: 127 L-PHVDNFAH 135
>gi|160892518|ref|ZP_02073308.1| hypothetical protein CLOL250_00047 [Clostridium sp. L2-50]
gi|156865559|gb|EDO58990.1| peptidase, S54 family [Clostridium sp. L2-50]
Length = 338
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 27/175 (15%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+LV+IA T+D + +L L++K Q++RL TS F H ++ H
Sbjct: 147 TPILVLLNILVFIAYVYTRDAYGYSFLEEILTDNLRYVLVEK-QYYRLLTSMFFHFSLTH 205
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIF 241
L+ N L ++G +E + G +Y+ VY I +S S C A GASGAI
Sbjct: 206 LLSNMVVLIALGARVEYLLGKVKYICVYLFCGIVASVCSIVSCYMGNFYEYAGGASGAIC 265
Query: 242 GLVGSFAVFIMRHRNILGGGK------EELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G VF G GK ++L L+ + I N G + +GIDN H
Sbjct: 266 GLMGILIVFAF-----FGKGKISDISLKDLIFLSVITILN---GYVSEGIDNAAH 312
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVF 250
SL G +E I GP + L +Y S + + +S F ++ + GASGAIFGL+G+ V
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGAIIVM 281
Query: 251 IM 252
++
Sbjct: 282 MI 283
>gi|226504776|ref|NP_001142335.1| membrane protein [Zea mays]
gi|194708266|gb|ACF88217.1| unknown [Zea mays]
gi|224034285|gb|ACN36218.1| unknown [Zea mays]
gi|414886370|tpg|DAA62384.1| TPA: membrane protein [Zea mays]
Length = 324
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 105 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 164
Query: 223 AMSYRFCNSP--AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F + +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 165 VLSALFLRNSYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 224
Query: 281 LIKGIDNWGH 290
L +DN+ H
Sbjct: 225 L-PHVDNFAH 233
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVY---AYLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGH 290
I GH
Sbjct: 171 PSISLSGH 178
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E I G ++L Y
Sbjct: 39 LLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSY 98
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
F + + + ++ F ++ +VGASGAIFGL+G
Sbjct: 99 FFTGVVGNIATHIFYHDTISVGASGAIFGLIG 130
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N+ L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVALWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHYNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 M 252
+
Sbjct: 285 L 285
>gi|224122384|ref|XP_002318821.1| predicted protein [Populus trichocarpa]
gi|222859494|gb|EEE97041.1| predicted protein [Populus trichocarpa]
Length = 298
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++ K Q WRL + +LHA I HL+ N SL IG +E+ G R VY S S
Sbjct: 80 TKVVHKHQGWRLISCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGIVYLLSGFGGS 139
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ ++ + +I L L + N+AIG+L
Sbjct: 140 VLSSLFIRNSISVGASGALFGLLGAMLSELITNWSIYTNKTAALFTLLVITAINLAIGIL 199
Query: 282 IKGIDNWGH 290
+ +DN+ H
Sbjct: 200 PR-VDNFAH 207
>gi|218186222|gb|EEC68649.1| hypothetical protein OsI_37086 [Oryza sativa Indica Group]
Length = 773
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA + ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 97 LLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLV 156
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 157 YLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 216
Query: 273 IFNMAIGLLIKGIDNWGH 290
+ N+A+G+L + +DN+ H
Sbjct: 217 VVNLALGILPR-VDNFAH 233
>gi|409911728|ref|YP_006890193.1| rhomboid-like membrane protein [Geobacter sulfurreducens KN400]
gi|298505301|gb|ADI84024.1| rhomboid-related membrane protein [Geobacter sulfurreducens KN400]
Length = 279
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 135 NILLAVNVLVYIAQFATQDK-----------------LLLWGAKINSLIDK-GQFWRLAT 176
I+LAVNV++Y+A ++ LLL GA ID+ G+FW L +
Sbjct: 54 TIILAVNVVMYVASLLVDNRPLGQGGLFSALSPGRNSLLLLGATGVVPIDRFGRFWTLLS 113
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
+ +LH + H+ N +L I P + + G R +Y +A +SY +GA
Sbjct: 114 ANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGA 173
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGG--KEELQHLAKVIIFNMAIGLLIKGIDNW 288
S AI L+GS + + G KE + + +F GL++ GIDNW
Sbjct: 174 SCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLF----GLIVPGIDNW 223
>gi|283797031|ref|ZP_06346184.1| rhomboid protease GluP [Clostridium sp. M62/1]
gi|291075447|gb|EFE12811.1| peptidase, S54 family [Clostridium sp. M62/1]
Length = 205
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 159 GAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA I L+ + G+++RL TS FLH +I HL+ N L +G +E+I G RYL Y
Sbjct: 41 GAVIPVLVVENGEYYRLITSVFLHFSIRHLLNNMLVLFILGDRLEQILGGVRYLLFYLLC 100
Query: 218 AIASSAMSYRF------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+ ++ +S F + + GASGAIFG+VG + +R LG LA +
Sbjct: 101 GLGANIVSLIFDLKMGDWYTMSAGASGAIFGVVGGLMWIVFMNRGRLGDLSS--GQLAVM 158
Query: 272 IIFNMAIGLLIKGIDNWGH 290
F + +G G+DN H
Sbjct: 159 AFFTLYLGFTSSGVDNAAH 177
>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis]
gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]
Length = 325
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL T +LHA I HL+ N L IG +E+ G R +Y S A S +S F
Sbjct: 110 QGWRLVTCIWLHAGIIHLLANMLCLVFIGVRLEQQFGFVRIGIIYLVSGFAGSVLSSLFI 169
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
NS +VGASGA+FGL+G+ ++ + + L L +I N+AIG+L +DN+
Sbjct: 170 RNSISVGASGALFGLLGAMLSELITNWTLYTNKAAALLTLLVIIAINLAIGIL-PHVDNF 228
Query: 289 GH 290
H
Sbjct: 229 AH 230
>gi|282851375|ref|ZP_06260740.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
gi|282557343|gb|EFB62940.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
Length = 241
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGI 304
+ +R I Q LA II N+A+ L ID GH G + LLGI
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGH--LGGLISGFLLGI 190
>gi|400756473|ref|NP_952241.2| LOW QUALITY PROTEIN: rhomboid-like membrane protein [Geobacter
sulfurreducens PCA]
gi|399107784|gb|AAR34564.2| LOW QUALITY PROTEIN: rhomboid-related membrane protein [Geobacter
sulfurreducens PCA]
Length = 279
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 135 NILLAVNVLVYIAQFATQDK-----------------LLLWGAKINSLIDK-GQFWRLAT 176
I+LAVNV++Y+A ++ LLL GA ID+ G+FW L +
Sbjct: 54 TIILAVNVVMYVASLLVDNRPPGQGGLFSALSPGRNSLLLLGATGVVPIDRFGRFWTLLS 113
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
+ +LH + H+ N +L I P + + G R +Y +A +SY +GA
Sbjct: 114 ANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGA 173
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGG--KEELQHLAKVIIFNMAIGLLIKGIDNW 288
S AI L+GS + + G KE + + +F GL++ GIDNW
Sbjct: 174 SCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLF----GLIVPGIDNW 223
>gi|238853801|ref|ZP_04644167.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
gi|238833610|gb|EEQ25881.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
Length = 228
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGI 304
+ +R I Q LA II N+A+ L ID GH G + LLGI
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGH--LGDLISGFLLGI 190
>gi|194703068|gb|ACF85618.1| unknown [Zea mays]
gi|195643104|gb|ACG41020.1| membrane protein [Zea mays]
gi|219888419|gb|ACL54584.1| unknown [Zea mays]
gi|224031257|gb|ACN34704.1| unknown [Zea mays]
gi|414591379|tpg|DAA41950.1| TPA: membrane protein [Zea mays]
Length = 327
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 108 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 167
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 168 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 227
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 228 LPHA-DNFAH 236
>gi|326504866|dbj|BAK06724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 418
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
T LL GA + K ++WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 136 TSATLLQMGALETGKVAKDHEWWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLR 195
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 196 IGTLYVISGVGGSLLSALFMVSNISVGASGALFGLLGSMLSELITNWTIYENKCAALLTL 255
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+I+ N+A+G+L +DN+ H
Sbjct: 256 VMIIVINLAVGIL-PHVDNFAH 276
>gi|257887050|ref|ZP_05666703.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257895615|ref|ZP_05675268.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293377774|ref|ZP_06623963.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|431033159|ref|ZP_19491005.1| S54 family peptidase [Enterococcus faecium E1590]
gi|431108247|ref|ZP_19497398.1| S54 family peptidase [Enterococcus faecium E1613]
gi|431752138|ref|ZP_19540823.1| S54 family peptidase [Enterococcus faecium E2620]
gi|431756962|ref|ZP_19545594.1| S54 family peptidase [Enterococcus faecium E3083]
gi|431762189|ref|ZP_19550751.1| S54 family peptidase [Enterococcus faecium E3548]
gi|257823104|gb|EEV50036.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257832180|gb|EEV58601.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|292643774|gb|EFF61895.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|430564260|gb|ELB03444.1| S54 family peptidase [Enterococcus faecium E1590]
gi|430569371|gb|ELB08375.1| S54 family peptidase [Enterococcus faecium E1613]
gi|430614202|gb|ELB51191.1| S54 family peptidase [Enterococcus faecium E2620]
gi|430620816|gb|ELB57618.1| S54 family peptidase [Enterococcus faecium E3083]
gi|430624881|gb|ELB61531.1| S54 family peptidase [Enterococcus faecium E3548]
Length = 232
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT + L + +V+I F + G L+ ++WRL T F+H + H ++N
Sbjct: 18 WTYVFLGIQTIVFIIMELFPRLEIPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G A
Sbjct: 78 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFG--A 135
Query: 249 VFIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI+ H ++ ++H I GLL +D WGH
Sbjct: 136 LFILGFHFKYNTAIQQLVRHFLLFIAMTFVFGLLDTSVDVWGH 178
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 183
Query: 284 GIDN 287
+ +
Sbjct: 184 AVGS 187
>gi|242056443|ref|XP_002457367.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
gi|241929342|gb|EES02487.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
Length = 338
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
T LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 139 TSATLLEMGALETSKVTKDHEGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFIR 198
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 199 IGTLYVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTL 258
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+I+ N+A+G+L +DN+ H
Sbjct: 259 VMIIVINLAVGIL-PHVDNFAH 279
>gi|363808368|ref|NP_001242000.1| uncharacterized protein LOC100784671 [Glycine max]
gi|255639055|gb|ACU19828.1| unknown [Glycine max]
Length = 330
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++ Q WRL T +LHA + HL N SL IG +E+ G R +Y S S
Sbjct: 110 DDVVNHHQAWRLVTCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGS 169
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 170 VLSSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLLFIIVINLAIGML 229
Query: 282 IKGIDNWGH 290
+D++ H
Sbjct: 230 -PHVDDFAH 237
>gi|425054674|ref|ZP_18458179.1| peptidase, S54 family [Enterococcus faecium 505]
gi|403035626|gb|EJY47012.1| peptidase, S54 family [Enterococcus faecium 505]
Length = 238
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT + L + +V+I F + G L+ ++WRL T F+H + H ++N
Sbjct: 24 WTYVFLGIQTIVFIIMELFPRLEIPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G A
Sbjct: 84 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFG--A 141
Query: 249 VFIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI+ H ++ ++H I GLL +D WGH
Sbjct: 142 LFILGFHFKYNTAIQQLVRHFLLFIAMTFVFGLLDTSVDVWGH 184
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 134 TNILLAVNVLVY--------IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T ++L+ NVL+ I F Q LL+ GA+ L+ G+++R+ T+ F+H +
Sbjct: 7 TYVILSFNVLIAVFMFFLSSIPVFRNQAYLLIRLGAQYGPLVSGGEWYRVITAMFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGL 243
HL+ N Y+L G +E I G +++ Y + A+ + A + S +VGASGAIFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGNLATHVFYYRSISVGASGAIFGL 126
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
VG R + + L +IIFN+ G +
Sbjct: 127 VGILFALGFRRDTPIFMRQFTGMALLPMIIFNVVYGFM 164
>gi|271961709|ref|YP_003335905.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
gi|270504884|gb|ACZ83162.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
Length = 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA-------H 186
T LL VN+L Y A+ + + + + +G++WRL T AFLH ++ H
Sbjct: 79 TWALLIVNILAYAAESLSPSVVSAFQMSSGHVAFRGEWWRLITGAFLHMPLSAGGFALTH 138
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
++ N ++L +IGP +E+ G R+L +Y SA+ S Y F AVGASGAI+G+ G
Sbjct: 139 ILFNMWALYAIGPELERRLGSLRFLVLYLLSALGGSVAIYLF-GIAAVGASGAIYGMFG- 196
Query: 247 FAVFIMRHR 255
A+F++ +
Sbjct: 197 -ALFVVSKK 204
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G+++RL TS FLHAN+ H+ N SL IGP +E + G R++ VY +A + S
Sbjct: 138 VANGEWYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTS 197
Query: 226 YRFCN--SPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y F SPA +GASGAI + G V +R R IL G +A V++ N+ I L
Sbjct: 198 YWFMTPLSPASLGASGAISAVFGCLVVIGLR-RKILDPGM-----IAVVLVINIVIPLQN 251
Query: 283 KGID 286
ID
Sbjct: 252 TNID 255
>gi|449483645|ref|XP_004156648.1| PREDICTED: uncharacterized protein LOC101224387 [Cucumis sativus]
Length = 471
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 201 EVNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFG 260
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 261 GSLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVG 320
Query: 280 LLIKGIDNWGH 290
+L +DN+ H
Sbjct: 321 IL-PHVDNFAH 330
>gi|422412807|ref|ZP_16489766.1| rhomboid family protein, partial [Listeria innocua FSL S4-378]
gi|313619110|gb|EFR90907.1| rhomboid family protein [Listeria innocua FSL S4-378]
Length = 472
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSTQIDIAGH 344
>gi|227551789|ref|ZP_03981838.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|424766449|ref|ZP_18193802.1| peptidase, S54 family [Enterococcus faecalis TX1337RF]
gi|227179094|gb|EEI60066.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|402410424|gb|EJV42827.1| peptidase, S54 family [Enterococcus faecium TX1337RF]
Length = 238
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT + L + +V+I F + G L+ ++WRL T F+H + H ++N
Sbjct: 24 WTYVFLGIQTIVFIIMELFPRLEIPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G A
Sbjct: 84 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFG--A 141
Query: 249 VFIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI+ H ++ ++H I GLL +D WGH
Sbjct: 142 LFILGFHFKYNTAIQQLVRHFLLFIAMTFVFGLLDTSVDVWGH 184
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA+ HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHASFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ + K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFLRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNASH 493
>gi|307312628|ref|ZP_07592260.1| Rhomboid family protein [Escherichia coli W]
gi|417606768|ref|ZP_12257294.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
gi|306907330|gb|EFN37835.1| Rhomboid family protein [Escherichia coli W]
gi|345364756|gb|EGW96877.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
Length = 265
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+GA LI + Q++RL T FLH I HLM N L ++G +EK G ++L +YF
Sbjct: 39 YGAMYPPLIFEDAQYYRLITCIFLHFGIDHLMNNMVMLGALGWNLEKEIGSFKFLLIYFV 98
Query: 217 SAIA----SSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
S I S AM + N + + GASGAIFGL+G+ ++R+R G+ + + +
Sbjct: 99 SGIGANLISLAMDFYTGNLAVSAGASGAIFGLLGALLWVVIRNRG--KAGRLTGRGMLFM 156
Query: 272 IIFNMAIGLLIKGIDNWGH 290
++ ++ G G+DN H
Sbjct: 157 VLLSLYFGFTSTGVDNAAH 175
>gi|395243825|ref|ZP_10420804.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
gi|394483875|emb|CCI81812.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
Length = 227
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLI--DKGQFWRLATSA 178
++NL I IL+ + V+ + F +T +LL +N+LI + QFWRL T+
Sbjct: 5 KSNLPIPYMTFAILIILLVVFLVETFTGGSTNAAVLLRLGAMNNLIVASQDQFWRLFTAQ 64
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVG 235
FLH HL N + +G +E I G R+L +Y S + + +S+ C S A G
Sbjct: 65 FLHIGWLHLASNAVMIYYVGQYLEPIIGSWRFLLIYLLSGVGGNLLSFA-CGSDYSVAAG 123
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AS A+FGL G+ +++ I Q LA II N+ + L +K ID GH
Sbjct: 124 ASTALFGLFGAIIAIYFKNKQIPAIFALGRQALALAII-NLFLDLFMKDIDILGH 177
>gi|310823474|ref|YP_003955832.1| hypothetical protein STAUR_6248 [Stigmatella aurantiaca DW4/3-1]
gi|309396546|gb|ADO74005.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 557
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 10/189 (5%)
Query: 111 NSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSL 165
S EG D R + + W + L + A ++Q D ++ +GAK+ L
Sbjct: 30 KSPPEGPWVQDGPRGDRWKRLPWVTLGLVLVQFSVYAWTSSQGLLDVDAMVRFGAKVGPL 89
Query: 166 I-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y V +S +++
Sbjct: 90 MTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYAAVLVASGLSTMTA 149
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH---LAKVIIFNMAIGLL 281
S + +VGASG +G VG V RHR +L + L V++F + +G
Sbjct: 150 SLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSPLARRMAGEGVLPTVLVF-LWMGWT 208
Query: 282 IKGIDNWGH 290
G+DN GH
Sbjct: 209 SAGVDNAGH 217
>gi|416408492|ref|ZP_11688379.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
gi|357260746|gb|EHJ10106.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
Length = 192
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL T+ FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITANFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-SAMSYRF-----CNSPAVGASGAIFG 242
+N +L IG +EKI Y+ +YF S I S SA SY + VGAS ++ G
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGSMSAFSYLAHYTGKLDYILVGASASVMG 121
Query: 243 LVGSFAVFIMR 253
LVGS +R
Sbjct: 122 LVGSLTAIFLR 132
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQELMHIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
Y N P++GASGA++GL G+ AV + R
Sbjct: 192 YLIAAQNQPSLGASGAVYGLFGATAVLMRR 221
>gi|389843282|ref|YP_006345362.1| hypothetical protein Theba_0391 [Mesotoga prima MesG1.Ag.4.2]
gi|387858028|gb|AFK06119.1| putative membrane protein [Mesotoga prima MesG1.Ag.4.2]
Length = 282
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 131 RQWTNILLAVNVLVYI-----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
R T L+ +NV+VY+ + +D + ++G + G + T+ F
Sbjct: 5 RSATITLIIINVIVYLLVAFMGLFRGPQGISYRDLITVYGGVSRFALSNGLIYTPLTALF 64
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LH N+ H++ N ++L +G +E + G + YL YF + I+ S + F + +G+S A
Sbjct: 65 LHGNLMHILFNMWALFQLGHVVEGVYGSKWYLLFYFVTGISGSLSAAAFSTAFTIGSSSA 124
Query: 240 IFGLVGSFAVFIMRH------RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
IFGLVG ++ R+I G L +I+ N+ +G I GI N H
Sbjct: 125 IFGLVGILFTLGLKKDTPVVLRSITG------YSLLPIILINLFLGFSIPGISNAAH 175
>gi|116872768|ref|YP_849549.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741646|emb|CAK20770.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 512
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAV 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I L ID GH
Sbjct: 329 NLFIDLFSTQIDIAGH 344
>gi|16800442|ref|NP_470710.1| hypothetical protein lin1374 [Listeria innocua Clip11262]
gi|422415832|ref|ZP_16492789.1| rhomboid family protein [Listeria innocua FSL J1-023]
gi|16413847|emb|CAC96605.1| lin1374 [Listeria innocua Clip11262]
gi|313623901|gb|EFR94013.1| rhomboid family protein [Listeria innocua FSL J1-023]
Length = 512
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSTQIDIAGH 344
>gi|108803986|ref|YP_643923.1| rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108765229|gb|ABG04111.1| Rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 209
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 146 IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205
+A ++L GA + + +G+ WRL TS FLHA HL +N SL +G E
Sbjct: 14 VALMTQPPEVLARGALVPLFVARGEVWRLLTSMFLHAGFIHLALNMLSLYFLGSFAETAF 73
Query: 206 GPRRYLGVYFSSAIASSAMSYRFCNS---PAVGASGAIFGLVGSFAVFIMRH 254
G R+ +Y S + SS ++Y + PAVGASGAIFGL+G + +R
Sbjct: 74 GRLRFFALYMLSGL-SSGIAYLYFGGFAQPAVGASGAIFGLLGGVLGYALRR 124
>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]
Length = 325
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 164
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F NS +VGASGA+FGL+G+ ++ + ++ L L ++ N+ +G+L +
Sbjct: 165 SSLFIQNSISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPR 224
Query: 284 GIDNWGH 290
++N+ H
Sbjct: 225 -VNNFAH 230
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N I +G+ WRL T F+H+ AH++ N +SL GP +E++ G R+L VY S + +
Sbjct: 49 VNLYIMEGEVWRLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGLIA 108
Query: 222 SAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ + VG+SGAIFGL G + I+ +++L ++
Sbjct: 109 NVATLLLEPLTYTHVGSSGAIFGLFGYYIAIIIFRKHMLSKQNSQI 154
>gi|423100417|ref|ZP_17088124.1| peptidase, S54 family [Listeria innocua ATCC 33091]
gi|370793418|gb|EHN61256.1| peptidase, S54 family [Listeria innocua ATCC 33091]
Length = 518
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSTQIDIAGH 350
>gi|315641220|ref|ZP_07896297.1| rhomboid family protein [Enterococcus italicus DSM 15952]
gi|315482987|gb|EFU73506.1| rhomboid family protein [Enterococcus italicus DSM 15952]
Length = 226
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 133 WTNILLAVNVLVY-IAQFATQDKL----LLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + L + LV+ I F L +L+G I L Q+WR T F H + H
Sbjct: 15 FTWLFLGIQTLVFLIGYFLPSIPLESNGVLYGPAIAFL---HQYWRFLTPIFFHFGLMHF 71
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
VN L +G +E I G R+ +Y + I + MS+ F + + G+S A+FGL G
Sbjct: 72 AVNSVVLYYMGEQIEAIYGHTRFFIIYLVTGIMGNLMSFAFNTAGIISAGSSTALFGLFG 131
Query: 246 SFAV--FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
SF + F +RH + G ++ +I + G+ + ID WGH
Sbjct: 132 SFIILGFHLRHNPAIEG---MVKQFTLFLILSFVFGMFDQLIDIWGH 175
>gi|451337929|ref|ZP_21908468.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
gi|449419521|gb|EMD25056.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
Length = 320
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANI 184
T +LLA+NV+++ A L G N + G++WR+ TS FL +
Sbjct: 90 TPVLLALNVVIFFITVAQSGSISDNNFSALFQLGELSNPPTLAAGEWWRIFTSGFLQYGL 149
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIF 241
H+ N +SL +G +E G + +YF S + SA + F + +P VGASGAIF
Sbjct: 150 LHIASNAFSLWFVGRPLETALGRVPFTALYFVSMLGGSAANLVFTDLDAAPVVGASGAIF 209
Query: 242 GLVGSFAVFIMRHR 255
GL+G++ V +++ R
Sbjct: 210 GLIGAYTVIVIKLR 223
>gi|449440331|ref|XP_004137938.1| PREDICTED: uncharacterized protein LOC101206123 [Cucumis sativus]
Length = 397
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 127 EVNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFG 186
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 187 GSLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVG 246
Query: 280 LLIKGIDNWGH 290
+L +DN+ H
Sbjct: 247 IL-PHVDNFAH 256
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 47 HHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG 106
HP A LL + C P D E A F V+ T A
Sbjct: 23 RHPDRATGLLCAR-------CERPACPDCLREAAVGFQCVDCV--TEGART--------- 64
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAK 161
TR+ EG +H T R L + L + Y+ T Q + GA
Sbjct: 65 -TRQARTVEGATHASTGRRLLVVPVLIVVNLALFALTAYLGGGVTDRDVFQSDVTQEGAL 123
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ + G++WRL TS FLH + H+ +N SL +G +E + G R+L VY S +
Sbjct: 124 VPYFVALGEWWRLVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLAVYLLSLLGG 183
Query: 222 SAMSYRFCN--SPAVGASGAIFGLVGS 246
SA Y F S GASGAI+GL+GS
Sbjct: 184 SASVYLFEEVVSLTAGASGAIYGLMGS 210
>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 324
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 104 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 163
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F NS +VGASGA+FGL+G+ ++ + ++ L L ++ N+ +G+L +
Sbjct: 164 SSLFIQNSISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPR 223
Query: 284 GIDNWGH 290
++N+ H
Sbjct: 224 -VNNFAH 229
>gi|242049912|ref|XP_002462700.1| hypothetical protein SORBIDRAFT_02g030450 [Sorghum bicolor]
gi|241926077|gb|EER99221.1| hypothetical protein SORBIDRAFT_02g030450 [Sorghum bicolor]
Length = 325
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 106 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L ++ N+AIG+
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIVALNLAIGI 225
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 226 LPHA-DNFAH 234
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQFWRLATSAFL 180
R T +L+A+N+ V++ A D L+ A+ S + +G+++RL T+ FL
Sbjct: 125 RLITKVLIALNLAVFVLVKAAPDSARLLDDLVMVARFPSYPQPIGVAEGEWYRLLTATFL 184
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASG 238
H + H+ +N SL +G +E + G R+L +Y + + S S+ F + ++GASG
Sbjct: 185 HEEVWHIGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVASFLFADPLGASLGASG 244
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AIFGL G+ V ++R R + + +++ N+ I GI H
Sbjct: 245 AIFGLFGATGVLVLRVR-------ADFRPFVALLVINLIITFGWSGIAWQAH 289
>gi|347548722|ref|YP_004855050.1| hypothetical protein LIV_1288 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981793|emb|CBW85766.1| Putative yqgP [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 512
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR T FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 ILGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAV 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ + + ID GH
Sbjct: 329 NLLLDVFSSQIDIAGH 344
>gi|116630012|ref|YP_815184.1| membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311110357|ref|ZP_07711754.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
gi|116095594|gb|ABJ60746.1| Membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311065511|gb|EFQ45851.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
Length = 228
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGI 304
+ +R I Q LA II N+A+ L ID GH G + LLGI
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGH--LGGLISGFLLGI 190
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E GP + LG Y S I + +S S ++GASGAIFGL+G+
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGAL 278
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ R K LQ + V++ ++ LLI+ ++ H
Sbjct: 279 IALMIISRRF--DQKVILQMVIAVVVM-ASLTLLIQNVNVVAH 318
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E GP + LG Y S I + +S S ++GASGAIFGL+G+
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGAL 278
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ R K LQ + V++ ++ LLI+ ++ H
Sbjct: 279 IALMIISRRF--DQKVILQMVIAVVVM-ASLTLLIQNVNVVAH 318
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 40 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 99
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 100 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 159
Query: 245 GSFAVFIMRHR 255
G+ + ++R R
Sbjct: 160 GAMLIVVLRLR 170
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFATQDKL---LLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYS 193
+ + V VYI F+ +K + GA + ++G++WR TSAF+H HL +N Y
Sbjct: 3 ICIAVFVYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNMYC 62
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLVGS 246
+ +G E I GP RYL + S + SS +Y + NS +GASG +G +G+
Sbjct: 63 IFYLGRLFETILGPVRYLILVLVSIVMSSLATYYYSFRDSSVDNSITIGASGLFYGFLGA 122
>gi|300361225|ref|ZP_07057402.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
gi|300353844|gb|EFJ69715.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
Length = 228
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNAILIVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + IG ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYIGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGI 304
+ +R I Q LA II N+A+ L ID GH G + LLGI
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGH--LGGLISGFLLGI 190
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
++ GQ WRL T+AFLH + HL +N +L G +E+ G RY+G+Y SA+ S
Sbjct: 85 VEFGQPWRLLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGLYLVSALGGSTAI 144
Query: 226 YRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
F + P GAS AI+GL+G+ V ++ R ++++ + ++ N+ I L
Sbjct: 145 QLFGDPLRPVAGASTAIYGLLGALGVLMLVRR-------QDIRGILVLLAINVFISFL-P 196
Query: 284 GIDNWGH 290
G+ GH
Sbjct: 197 GVSLLGH 203
>gi|118619868|ref|YP_908200.1| serine protease [Mycobacterium ulcerans Agy99]
gi|118571978|gb|ABL06729.1| rhomboid family serine protease [Mycobacterium ulcerans Agy99]
Length = 254
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGRLHLVFNMWALYVVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 183
Query: 284 GIDN 287
+ +
Sbjct: 184 AVGS 187
>gi|405354247|ref|ZP_11023627.1| putative membrane protein [Chondromyces apiculatus DSM 436]
gi|397092490|gb|EJJ23248.1| putative membrane protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 553
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
D LL WGAK L+ D GQ WRL T+ FLH ++ HL +N L + G +E++C R Y+
Sbjct: 61 DTLLRWGAKAGPLVVDAGQGWRLVTANFLHRDLLHLGLNLLVLLAAGSGLERLCRRRDYV 120
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
V ++ +A+ A S + + +VGASG ++G VG+ V RHR L +
Sbjct: 121 AVLAAAGLATMAGSLGWSGAVSVGASGMVYGCVGALLVLGRRHRTRLSSRWMSGEGALPT 180
Query: 272 IIFNMAIGLLIKGIDN 287
++ + +G G+DN
Sbjct: 181 VLVFLWMGWTSVGVDN 196
>gi|254295337|ref|YP_003061360.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254043868|gb|ACT60663.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 208
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+ +G T L+A NV + F+ + + ++ K Q++R+ TS FLH +
Sbjct: 3 EVLLGAPITLALIAANVAFSLIGFSNEKFFRANYLLVGDIVQKHQWYRVLTSGFLHVSPG 62
Query: 186 HLMVNCYSLNSIGPTME-KICGPRRYLGVYFSSAIASSAMS----YRFCNSPAVGASGAI 240
HL++N +L GP +E K+ GP YL VYF S IA A + YR + AVGASGA+
Sbjct: 63 HLLLNMLTLFFFGPYLEIKLLGPTGYLLVYFVSLIAGGAWAVLENYRRLDYSAVGASGAV 122
Query: 241 FGLVGSFAVF 250
G + SF +F
Sbjct: 123 SGALISFCMF 132
>gi|147777535|emb|CAN75940.1| hypothetical protein VITISV_040961 [Vitis vinifera]
Length = 292
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 105 GLEWNKVVYGDQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLVSG 164
Query: 219 IASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
S +S F + +VGASGA+FGL+G+ ++ + +I L L +I N+A
Sbjct: 165 FGGSILSSLFIQHNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAINLA 224
Query: 278 IGLLIKGIDNWGH 290
+G+L +DN+ H
Sbjct: 225 VGIL-PHVDNFAH 236
>gi|422960536|ref|ZP_16971984.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
gi|371593784|gb|EHN82660.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
Length = 265
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|268319881|ref|YP_003293537.1| hypothetical protein FI9785_1410 [Lactobacillus johnsonii FI9785]
gi|262398256|emb|CAX67270.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 228
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
TN +L V +V+I + +T +L+ GA N L+ G Q+WRL T+ FLH H+
Sbjct: 15 TNAILIVLFVVFIIETMMGGSTNINILVRLGAMNNQLVTVGHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYVSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R I Q LA II N+A+ L ID GH
Sbjct: 135 VVIALYLANRAIPAINYLGRQALALAII-NLALDLFASHIDILGH 178
>gi|386008108|ref|YP_005926386.1| rhomboid family protein [Listeria monocytogenes L99]
gi|307570918|emb|CAR84097.1| rhomboid family protein [Listeria monocytogenes L99]
Length = 512
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|237832263|ref|XP_002365429.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
gi|211963093|gb|EEA98288.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
Length = 283
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG T+E+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|422409553|ref|ZP_16486514.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
gi|313608952|gb|EFR84701.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
Length = 518
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|404407774|ref|YP_006690489.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
gi|404241923|emb|CBY63323.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
Length = 512
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|254824604|ref|ZP_05229605.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
gi|255520229|ref|ZP_05387466.1| rhomboid family protein [Listeria monocytogenes FSL J1-175]
gi|293593842|gb|EFG01603.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
Length = 518
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIAQFA---TQDK--LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+LV+IA T+D +L GA +I+ +++RL TS FLH I+HL
Sbjct: 10 TIMLIGINILVFIALTMIGRTEDGYFMLQHGAMYEPYIIENQEYYRLFTSLFLHFGISHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
+ N L ++G EK G R+L YF S I + +S + + GASGAIFG
Sbjct: 70 LNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGNLLSLYWNIMHDRQIVSAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G + +R L G + + +++ ++ G G+DN H
Sbjct: 130 LMGGLLWIVFANRGRL--GTLSGRGMLIMVVLSLYFGFTSTGVDNLAH 175
>gi|414876345|tpg|DAA53476.1| TPA: hypothetical protein ZEAMMB73_598699 [Zea mays]
Length = 663
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 155 LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R +
Sbjct: 136 LLEMGALETSKVTKDHEGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIRIGTL 195
Query: 214 YFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L +I
Sbjct: 196 YVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTLVMII 255
Query: 273 IFNMAIGLLIKGIDNWGH 290
+ N+A+G+L +DN+ H
Sbjct: 256 LINLAVGIL-PHVDNFAH 272
>gi|404280891|ref|YP_006681789.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404286756|ref|YP_006693342.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749679|ref|YP_006673145.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|405755466|ref|YP_006678930.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|417317486|ref|ZP_12104103.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|328475056|gb|EGF45844.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|404218879|emb|CBY70243.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|404224666|emb|CBY76028.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|404227526|emb|CBY48931.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404245685|emb|CBY03910.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 512
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|226223938|ref|YP_002758045.1| hypothetical protein Lm4b_01345 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732075|ref|YP_006205571.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|405752554|ref|YP_006676019.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406704108|ref|YP_006754462.1| rhomboid family protein [Listeria monocytogenes L312]
gi|225876400|emb|CAS05109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384390833|gb|AFH79903.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|404221754|emb|CBY73117.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406361138|emb|CBY67411.1| rhomboid family protein [Listeria monocytogenes L312]
Length = 512
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|374310995|ref|YP_005057425.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358753005|gb|AEU36395.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 284
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQF------------------ 149
TR+ + +S LD T L IG +N+LV+ F
Sbjct: 11 TRRRNDDRHSSLLDYPATYLLIG---------INLLVFAIMFRYSPALPLMRQHISWQIL 61
Query: 150 -ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206
A+ D LL +G + + GQ+WRL TS F+H I HL++N + L ++G E + G
Sbjct: 62 TASFDVNTLLRFGGSDAAYVMNGQWWRLITSTFVHVTILHLVLNMWCLWNLGLFGEPLLG 121
Query: 207 PRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
+ VY + A +S +S GASGAIFGL G V + + L
Sbjct: 122 RPGLIAVYLLTGTAGMMLSLTLSVAQQQDSLVAGASGAIFGLAGILIVLLSNRK--LAAP 179
Query: 262 KEELQHLAKVIIF----NMAIGLLIKGI 285
+EL+ L + +I+ N+ IGLL + +
Sbjct: 180 WKELRSLRRSVIWFAVLNLVIGLLPQAL 207
>gi|217964517|ref|YP_002350195.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|386026709|ref|YP_005947485.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
gi|217333787|gb|ACK39581.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|336023290|gb|AEH92427.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
Length = 518
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|290893553|ref|ZP_06556536.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
gi|290556898|gb|EFD90429.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
Length = 518
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|291561790|emb|CBL40590.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[butyrate-producing bacterium SS3/4]
Length = 206
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 136 ILLAVNVLVYIAQFAT---QDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMV 189
+L+A+NVL ++ T +D ++ GA ++++ G+++RL T+ F+H I H+M
Sbjct: 14 LLIALNVLFFLYLEITDSSEDAYFMYTKGAMFAPAVLEDGEYYRLLTAMFMHFGIRHIMN 73
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAV--GASGAIFGLVG 245
N L IG +E+ G +YL Y I S+ +M ++ V GASGAIFG+VG
Sbjct: 74 NMLVLFVIGDNLERALGHVKYLIFYLLCGIGSNWVSMMAHTADTMTVSAGASGAIFGVVG 133
Query: 246 SFAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGH 290
+ +R G E+L + L +I F++ +G G+DN H
Sbjct: 134 GLLYVVTANR----GQLEDLNTRQLVIMIFFSLYLGYTSTGVDNIAH 176
>gi|46907563|ref|YP_013952.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424714211|ref|YP_007014926.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
gi|46880831|gb|AAT04129.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424013395|emb|CCO63935.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
Length = 518
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 15/171 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS-FAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+GS A++ + + NI+ G++ L I N+ + + +D GH
Sbjct: 136 LMGSVLALYFLNNDNIIAVIIGRQAFLLL----ICNIVVDFFMPSVDIIGH 182
>gi|47093617|ref|ZP_00231374.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|254932348|ref|ZP_05265707.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|258611754|ref|ZP_05241962.2| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|300765423|ref|ZP_07075405.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|424823099|ref|ZP_18248112.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
gi|47017993|gb|EAL08769.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|258605928|gb|EEW18536.1| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|293583904|gb|EFF95936.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|300513860|gb|EFK40925.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|332311779|gb|EGJ24874.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
Length = 518
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|430741443|ref|YP_007200572.1| hypothetical protein Sinac_0438 [Singulisphaera acidiphila DSM
18658]
gi|430013163|gb|AGA24877.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 654
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
T ++ A VLVY+A A + +L WGA S++ Q WRL TS FLH +
Sbjct: 273 TPLMAAACVLVYVAMVARGVSPIDPSPRVMLDWGASFGPSVVFDRQVWRLLTSMFLHFGL 332
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFG 242
HL +N + L + GP +E+ G + +Y S + +A S F + + GASGAIFG
Sbjct: 333 IHLAMNLWCLLTTGPVVERFFGHLGFAALYVLSGLGGAAASL-FVHPTFICAGASGAIFG 391
Query: 243 LVGSFAVFI-MRHRNILGGGKEELQHLAKVII-FNMAIGLLIKGIDNWGH 290
+ G F+ +RHR++ + ++ + +N+ GL ID H
Sbjct: 392 VFGGLLGFLAIRHRDVPPAILQPMRSGTLAFLGYNVLFGLTSSTIDMAAH 441
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 51 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 110
Query: 226 YRFCN--SPAVGASGAIFGLVGSFAVFIMRHRN 256
Y ++GASGA++GL G+ AV +MR N
Sbjct: 111 YLLAEPGQGSLGASGAVYGLFGATAV-LMRRMN 142
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N L +G T+E++ G R +Y S + + +S + + GAS IFGL G+F
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVHPVTISAGASTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
R Q+L VII N+ L+ GID +GH
Sbjct: 131 LFMGSEFRQYPALRGLARQYLILVII-NLVYDLIAPGIDIFGH 172
>gi|422809417|ref|ZP_16857828.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
gi|378753031|gb|EHY63616.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
Length = 518
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 134 TNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T+++L +N++++I +T D ++ +GA ++WR S FLH HL+
Sbjct: 19 TSLILIINIVLFIIMEVVGSTSDMATMINFGAMFRLSGFSPEWWRYFASMFLHFGFMHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+NC++L P +E++ G RYL Y S + S +SY + V GASGA++G+ +
Sbjct: 79 MNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLLMSERTVSAGASGAVYGVFAA 138
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +++L + Q + ++I + LL G+ +GH
Sbjct: 139 YLFLAIFRKDVLDA--QSGQTIKTILIVGLIYSLL-PGVSFFGH 179
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVNV ++ Q + Q L+L+ + + G+++RL +SAFLH H++ N
Sbjct: 72 TYVLIAVNVAMFALQMMSSELQRGLVLF----SPAVADGEWYRLISSAFLHYGPTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFASLYLVSALGGSVLVYLLSALGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
F++ R L +++ + +I N+A +I I +
Sbjct: 186 TFVVGKRLNL-----DVRWVVGLIALNLAFTFVIPLISS 219
>gi|392955180|ref|ZP_10320725.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
gi|391878845|gb|EIT87420.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
Length = 198
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+LA+ ++VY+ T ++ L I N I +G++WRL T H HL+ N +SL
Sbjct: 21 ILAIQLIVYVLMTFTPLEVELSTTFIGYNEAISQGEYWRLITPLITHIEFPHLLFNSFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIM 252
GP +E++ G ++ YF S I S + N +GAS AIFGL G + +
Sbjct: 81 FIFGPLLERLLGKGLFIISYFGSGILSHLLLLYLLPENYAYLGASSAIFGLYGVYTYLLF 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHD 291
++IL G E Q L +I+ IGL++ + G +
Sbjct: 141 FKKHIL--GTEGRQLLLPLIV----IGLILSFVSLDGSE 173
>gi|357159526|ref|XP_003578474.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 330
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 111 NKVVHEHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 170
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I NMAIG+
Sbjct: 171 VLSALFLRSNYISVGASGALFGLLGSMLSELIMNWTIYSNKVAAIITLLFIIAINMAIGI 230
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 231 LPHA-DNFAH 239
>gi|110430670|gb|ABG73460.1| membrane protein [Oryza brachyantha]
Length = 326
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 107 NKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 166
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 167 VLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGI 226
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 227 LPHA-DNFAH 235
>gi|217072548|gb|ACJ84634.1| unknown [Medicago truncatula]
gi|388512075|gb|AFK44099.1| unknown [Medicago truncatula]
Length = 326
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
K +++++ Q WRL + +LHA I HL N SL IG +E+ G R VY S
Sbjct: 104 KWDAVVNHHQGWRLVSCIWLHAGIIHLAANMISLVFIGIRLEQQFGFVRIGIVYLVSGFG 163
Query: 221 SSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G+ ++ + +I L L +I+ N+ IG
Sbjct: 164 GSILSALFIRKSISVGASGALFGLLGAMLSELITNWSIYTNKVAALMTLLFIIVINLVIG 223
Query: 280 LLIKGIDNWGH 290
+L +DN+ H
Sbjct: 224 ML-PHVDNFAH 233
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N Y+L +G +E GP R+L +Y S + + +
Sbjct: 134 IAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GAS AIFGL A+F++ R LG ++ + +++ N+ L +
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRR--LG---RDVSQVLPILVINLVFTLTVP 246
Query: 284 GIDNWGH 290
GI GH
Sbjct: 247 GISIPGH 253
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 78 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 137
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 138 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 197
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+ + ++R R + +I N+ + I GI H
Sbjct: 198 GAMLIVVLRLR-------VSPAPVLTIIAINLVMSFSIPGISLAAH 236
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N++++ A+ +LL WGA G++WR T F+H I
Sbjct: 76 TRVLVAINLVIFGLMGASGLSLNQPSPAELLKWGADFGPNTLNGEWWRALTCMFVHIGIL 135
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFG 242
H+++N + L++ GP +E++ G +L Y S + S S +P V GASGA+FG
Sbjct: 136 HILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGSLASLWL--NPGVVSAGASGAVFG 193
Query: 243 LVGSFAVFIMRHRN 256
+ G+ + R R
Sbjct: 194 IYGALLGLLQRQRT 207
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 106 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 165
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 166 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 218
Query: 284 GIDN 287
+ +
Sbjct: 219 AVGS 222
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
+N L +G T+E++ G R +Y S + + +S + + GAS IFGL G+F
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVQPVTISAGASTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
R Q+L VII N+ L+ GID +GH
Sbjct: 131 LFMGSEFRQYPALRGLARQYLILVII-NLVYDLIAPGIDIFGH 172
>gi|225426828|ref|XP_002283259.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297742575|emb|CBI34724.3| unnamed protein product [Vitis vinifera]
Length = 328
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 105 GLEWNKVVYGDQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLVSG 164
Query: 219 IASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
S +S F + +VGASGA+FGL+G+ ++ + +I L L +I N+A
Sbjct: 165 FGGSILSSLFIQHNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAINLA 224
Query: 278 IGLLIKGIDNWGH 290
+G+L +DN+ H
Sbjct: 225 VGIL-PHVDNFAH 236
>gi|115480259|ref|NP_001063723.1| Os09g0525900 [Oryza sativa Japonica Group]
gi|52076044|dbj|BAD46497.1| putative membrane protein [Oryza sativa Japonica Group]
gi|52077312|dbj|BAD46353.1| putative membrane protein [Oryza sativa Japonica Group]
gi|113631956|dbj|BAF25637.1| Os09g0525900 [Oryza sativa Japonica Group]
gi|125564435|gb|EAZ09815.1| hypothetical protein OsI_32104 [Oryza sativa Indica Group]
gi|125606379|gb|EAZ45415.1| hypothetical protein OsJ_30065 [Oryza sativa Japonica Group]
gi|215700990|dbj|BAG92414.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765558|dbj|BAG87255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 323
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 104 NKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 163
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 164 VLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGI 223
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 224 LPHA-DNFAH 232
>gi|51893006|ref|YP_075697.1| hypothetical protein STH1868 [Symbiobacterium thermophilum IAM
14863]
gi|51856695|dbj|BAD40853.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863]
Length = 398
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 154 KLLLWGAKIN--SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
L++WGA + +L ++ Q WRL + FLH HL N ++ +G E I G R L
Sbjct: 209 SLVIWGANYSLLTLAERTQQWRLVSHLFLHGGAMHLAFNMWAFWQVGRYCELIYGSARML 268
Query: 212 GVYFSSAI--ASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+YF + + ++++ R +VGASGAI GL+G+ F RN + + Q L
Sbjct: 269 FIYFVAGVIGGVASVAVRPGLVISVGASGAILGLMGALIYFATTVRN----RRVDWQGLL 324
Query: 270 KVIIFNMAIGLLIKGIDNWGH 290
+ N+ G + +DN+ H
Sbjct: 325 APVAINLLFGFVYGRVDNYAH 345
>gi|295706593|ref|YP_003599668.1| membrane endopeptidase [Bacillus megaterium DSM 319]
gi|294804252|gb|ADF41318.1| membrane endopeptidase [Bacillus megaterium DSM 319]
Length = 506
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ + +++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 180 FTYIFLALQIFMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPIILHIGLLHL 239
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G
Sbjct: 240 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFG-- 297
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+ + N + +I+ N+ G + +DN GH
Sbjct: 298 ALLFLARTNPRFFFRTMGSSFIVIIVINLIFGFVAPNVDNAGH 340
>gi|241205206|ref|YP_002976302.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859096|gb|ACS56763.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 579
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRN 256
I GL + R R+
Sbjct: 325 GIVGLFAAVIAASFRFRS 342
>gi|116252699|ref|YP_768537.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257347|emb|CAK08442.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 579
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRN 256
I GL + R R+
Sbjct: 325 GIVGLFAAVIAASFRFRS 342
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N + G+++R+ TS FLH + H+ N L +G +E G RYL +Y S +A S
Sbjct: 120 NVGVADGEWYRILTSVFLHQEVWHIGFNMLGLWMLGGPLEAALGRVRYLALYLLSGLAGS 179
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
A++Y N P++GASGA+FGL+G+ V + R R
Sbjct: 180 ALTYVLVAPNQPSLGASGAVFGLMGATFVLLRRLR 214
>gi|115372709|ref|ZP_01460015.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
gi|115370190|gb|EAU69119.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
Length = 520
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
D ++ +GAK+ L+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y
Sbjct: 40 DAMVRFGAKVGPLMTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYA 99
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH---L 268
V +S +++ S + +VGASG +G VG V RHR +L + L
Sbjct: 100 AVLVASGLSTMTASLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSPLARRMAGEGVL 159
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
V++F + +G G+DN GH
Sbjct: 160 PTVLVF-LWMGWTSAGVDNAGH 180
>gi|289193057|ref|YP_003458998.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
gi|288939507|gb|ADC70262.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
Length = 190
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFC 229
W++ TS F+HANI HL+VN + L G +E + G ++YL ++ S I + ++Y +
Sbjct: 39 WQIITSMFMHANITHLLVNMFVLFIFGTYLENMIGSKKYLIIFLLSGIIGNLAYIAYAYL 98
Query: 230 N---SPAVGASGAIFGLVGSFAV 249
+P+VGASGAIFG++G+ A+
Sbjct: 99 TGDYNPSVGASGAIFGIMGALAI 121
>gi|408355704|ref|YP_006844235.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
gi|407726475|dbj|BAM46473.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
Length = 254
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 137 LLAVNVLVYIAQFATQD--KLL-LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
+LA+N+++++ + KL+ +WG N+ I+ G++WRL T FLHA + H++ N
Sbjct: 21 ILAINIILWLLMYFPNPIGKLIWIWGVGWNTGIEIGEYWRLVTPIFLHAPNEVTHILFNS 80
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
+SL GP +E++ G +++ VY + I + +Y N +GASGA
Sbjct: 81 FSLILFGPALEQMIGKFKFIFVYLFTGIVGNVFTYFVGINDLHLGASGA 129
>gi|336053788|ref|YP_004562075.1| hypothetical protein WANG_0278 [Lactobacillus kefiranofaciens ZW3]
gi|333957165|gb|AEG39973.1| possible membrane protein [Lactobacillus kefiranofaciens ZW3]
Length = 226
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 15/164 (9%)
Query: 136 ILLAVNVL-VYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYS 193
ILLAV ++ V++ + L+ GA N + GQ +WRL T+ FLH + HL+ N
Sbjct: 19 ILLAVFLVEVFLGGSENTNVLMKMGAMSNFAVVVGQQWWRLFTAQFLHIGVMHLVSNAVI 78
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFI 251
+ +G ME + G R+L Y + I + +S F + + GAS A+FGL G+
Sbjct: 79 IYYMGLYMEPLMGHWRFLATYLLAGIGGNLLSLAFGSDRGLSAGASTALFGLFGAMTAIG 138
Query: 252 MRH-RNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+R+ RN + +L + + + N+A+ L + GID WGH
Sbjct: 139 LRNMRN------PMISYLGRQAFVLALINLALDLFVPGIDIWGH 176
>gi|432615475|ref|ZP_19851606.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
gi|431157341|gb|ELE57985.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
Length = 625
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|433444473|ref|ZP_20409345.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
gi|432001501|gb|ELK22376.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
Length = 517
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +G +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFLHLFMNTFALYYLGSLVEKLYGSFRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------QHL 268
+ A S S+ F +S + GASGAIFG G+ F G K + ++
Sbjct: 277 LFAGFAGSLASFLFSSSVSAGASGAIFGCFGALLYF--------GKAKPHIFFRTIGMNV 328
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
VI N+A GL++ IDN GH
Sbjct: 329 ITVIGINLAFGLVVPNIDNAGH 350
>gi|332281798|ref|ZP_08394211.1| peptidase [Shigella sp. D9]
gi|417247117|ref|ZP_12040218.1| peptidase, S54 family [Escherichia coli 9.0111]
gi|332104150|gb|EGJ07496.1| peptidase [Shigella sp. D9]
gi|386209745|gb|EII20232.1| peptidase, S54 family [Escherichia coli 9.0111]
Length = 625
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|383458045|ref|YP_005372034.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
gi|380732947|gb|AFE08949.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
Length = 542
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ WGAK L+ D GQ WRL T+ LH + HL +N +G +E+ C Y+
Sbjct: 61 EALIHWGAKSGPLVTDAGQGWRLLTANLLHRDALHLGLNLLVFAGVGTAVERSCRWWDYV 120
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------ 265
+ S +A+ A S + + +VGASG +FG VG+ V R R G K
Sbjct: 121 ALLAVSGLATMAGSLWWSPTVSVGASGWVFGCVGALLVLGRRART---GAKSARMGWFSG 177
Query: 266 -QHLAKVIIFNMAIGLLIKGIDNWGH 290
L V++F + +G G+DN GH
Sbjct: 178 ENALPTVLVF-LWLGWTSVGVDNAGH 202
>gi|297193265|ref|ZP_06910663.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151714|gb|EFH31321.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 299
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------KGQFWRLATSAFL 180
R T I+LA+N+ V+ +D+ + I D G+++RLAT+ FL
Sbjct: 85 RLITKIILALNIAVFGLALGLEDEFVNRFTMIGYAYDPSLAEVVGVADGEWYRLATAMFL 144
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H H+ N L +G +E+ G RYL +Y S +A SA +Y SPA +GAS
Sbjct: 145 HETTWHIFFNMLLLWWLGGPLEEALGRVRYLALYLISGLAGSAFTY-LIESPAQGSLGAS 203
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
GAI+GL+G+ V + R R ++L+ + +I N+ I GI
Sbjct: 204 GAIYGLLGATVVLMRRMR-------QDLRPIMVLIAINLVITFYWAGI 244
>gi|420345839|ref|ZP_14847268.1| rhomboid family protein [Shigella boydii 965-58]
gi|391275891|gb|EIQ34674.1| rhomboid family protein [Shigella boydii 965-58]
Length = 265
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|331682074|ref|ZP_08382698.1| outer membrane protein [Escherichia coli H299]
gi|450186095|ref|ZP_21889397.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
gi|331080753|gb|EGI51927.1| outer membrane protein [Escherichia coli H299]
gi|449324675|gb|EMD14600.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
Length = 625
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGIFGGLISACYALHESEQIVISVGASGAIMGIAGA 142
>gi|432480048|ref|ZP_19722012.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
gi|431009897|gb|ELD24501.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
Length = 625
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|432380300|ref|ZP_19623258.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|432386071|ref|ZP_19628969.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|432512872|ref|ZP_19750108.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|432610348|ref|ZP_19846520.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|432645106|ref|ZP_19880906.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|432654904|ref|ZP_19890617.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|432697983|ref|ZP_19933151.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|432744603|ref|ZP_19979304.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|432903009|ref|ZP_20112626.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|432942624|ref|ZP_20139883.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|432970790|ref|ZP_20159668.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|432984306|ref|ZP_20173044.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|433037609|ref|ZP_20225226.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|433081560|ref|ZP_20268034.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|433100186|ref|ZP_20286296.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|433143253|ref|ZP_20328421.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|433187461|ref|ZP_20371581.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
gi|430909577|gb|ELC30943.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|430911560|gb|ELC32843.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|431044430|gb|ELD54703.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|431151166|gb|ELE52201.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|431183884|gb|ELE83657.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|431194298|gb|ELE93563.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|431246693|gb|ELF40951.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|431295076|gb|ELF85247.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|431436539|gb|ELH18054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|431453676|gb|ELH34060.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|431485927|gb|ELH65584.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|431506049|gb|ELH84653.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|431555144|gb|ELI29002.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|431605395|gb|ELI74784.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|431622309|gb|ELI91090.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|431665824|gb|ELJ32534.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|431709096|gb|ELJ73593.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
Length = 625
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 133 WTN-ILLAVNVLV---YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
W N I++A+N ++ Y + T D ++ A + I G + W L T+ FLH ++ HL
Sbjct: 152 WCNWIIIALNCIIFSLYAFSYETTDWVIEHLAMTPADILAGRELWTLVTATFLHGDLMHL 211
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGL 243
N Y L +G +E G ++YL +YF IA+S +S+ F N P+VGASGAI
Sbjct: 212 AGNMYFLYVVGDNIEDAVGHKKYLALYFFCGIAASLVSF-FSNMHGLIPSVGASGAI--- 267
Query: 244 VGSFAVFIMRHRN 256
G FA++++ R+
Sbjct: 268 AGFFAIYLLWFRH 280
>gi|256545972|ref|ZP_05473327.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
gi|256398394|gb|EEU12016.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
Length = 216
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N+LV+I T + LL + A + G++WRL F+H I HL+
Sbjct: 2 TRILMGINILVFILMTVTGGSENIENLLRFNAMSKIYVYYGEWWRLFCPIFIHIGIIHLL 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVG 245
+N Y LN++G E + G ++L +Y I + +Y F S + GAS +++GL G
Sbjct: 62 MNMYFLNNVGDEFESLYGSTKFLIIYLLCGIMGNLFTYAFGEVTSVSAGASTSLYGLFG 120
>gi|83646149|ref|YP_434584.1| hypothetical protein HCH_03410 [Hahella chejuensis KCTC 2396]
gi|83634192|gb|ABC30159.1| uncharacterized membrane protein [Hahella chejuensis KCTC 2396]
Length = 294
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+L WGA + GQ+WRL + FLH I HL +N ++L G +E++ G R+L ++
Sbjct: 47 MLQWGANFSPATQNGQWWRLDAAIFLHFGIVHLTLNAWALWDGGQWVERMYGQMRFLIIF 106
Query: 215 FSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+S + + +++ + + GASG IFG+ G+ ++ +++ + + I
Sbjct: 107 ITSGLIGNLFSLALHVVSVVSAGASGGIFGVYGALLSYLWLNKSRVPLTEFRWLFFGAAI 166
Query: 273 --IFNMAIGLLIKGIDNWGH 290
+ + +G LI G+DN H
Sbjct: 167 FSLLTIFLGFLIDGVDNAAH 186
>gi|222155404|ref|YP_002555543.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|387615935|ref|YP_006118957.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|222032409|emb|CAP75148.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|312945196|gb|ADR26023.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|58337771|ref|YP_194356.1| hypothetical protein LBA1506 [Lactobacillus acidophilus NCFM]
gi|58255088|gb|AAV43325.1| putative membrane protein [Lactobacillus acidophilus NCFM]
Length = 226
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 136 ILLAVNVLV--YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCY 192
I+L V LV ++ + L+ GA N + G Q+WRL T+ FLH + HL+ N
Sbjct: 18 IILVVVFLVEMFLGGSENVNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGVMHLVSNAV 77
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVF 250
+ +G ME I G R+L Y + I + MS F + GAS A+FGL G+
Sbjct: 78 IIYYMGQYMEPIMGHTRFLVTYLLAGIGGNLMSLAFSADRGLSAGASTALFGLFGAMTAI 137
Query: 251 IMRH-RN--ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+R+ RN I G++ L + + N+A+ + + GID WGH
Sbjct: 138 GLRNFRNPMISYLGRQAL----VLALINLALDIFVPGIDIWGH 176
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N SL G +
Sbjct: 1 MILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIV 59
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRH 254
E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F M +
Sbjct: 60 EAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFAMMY 111
>gi|197302289|ref|ZP_03167348.1| hypothetical protein RUMLAC_01016 [Ruminococcus lactaris ATCC
29176]
gi|197298720|gb|EDY33261.1| peptidase, S54 family [Ruminococcus lactaris ATCC 29176]
Length = 211
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 137 LLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVN 190
L+ VN+ V++ D +L GA +I + Q ++R T FLH I HL+ N
Sbjct: 13 LIIVNIAVFMVLSLLGDTENGYFMLHHGAMYEPMILENQEYYRFFTCMFLHFGIQHLLNN 72
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVG 245
L ++G +E + G +YL +YF S + S +S+ + S + GASGAIFGL+G
Sbjct: 73 MVMLGALGWQLEPVIGKVKYLLIYFISGLGGSGLSFAWNVMHEEQSVSAGASGAIFGLMG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ +R L G + + +++ + G+ G+DN H
Sbjct: 133 ALLYVVIANRGRL--GDLSGKGMMLMVLLGLYCGMTSTGVDNLAH 175
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 17/134 (12%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F D + +LW + LID ++WRL TS FLH
Sbjct: 112 LLIAVNVVVYALTAFQAGDVMNNYLSPVFADGVLWPEAV-VLID--EWWRLLTSGFLHYG 168
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
+ HL +N +L +G +E + G R+L VYF S A + + + GASGAI+
Sbjct: 169 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGAVAVFVLGEPGTATAGASGAIY 228
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V ++R R
Sbjct: 229 GLMGAVLVAVLRLR 242
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 22/139 (15%)
Query: 133 WTNILLAVNVLVYIAQFAT-----------------QDKLLLWGAKINSLIDKGQFWRLA 175
W N ++A+ +L+Y+A+ T +D ++ + + + W++
Sbjct: 17 WNNTIIAICILIYLAKVLTGLLGIYAIIRMPFGVTYRDNIVDYLLALFPINVLSMPWQII 76
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNS-- 231
TS F+HA+ HL +N + L G +E+ G R+YL ++F+S IA + + Y F +
Sbjct: 77 TSIFVHADFWHLFINMFVLFFFGNELERRLGERKYLIIFFASGIAGNLAYLVYAFLTNPF 136
Query: 232 -PAVGASGAIFGLVGSFAV 249
PA+GAS AIFG++G+ A+
Sbjct: 137 IPAMGASAAIFGVMGALAI 155
>gi|262375829|ref|ZP_06069061.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309432|gb|EEY90563.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 272
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 38/189 (20%)
Query: 134 TNILLAVNVLVY---------IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +NV ++ ++Q +T+D +L WGA L + RL +S F H +
Sbjct: 21 TAILIGINVGLFGWQAINGMDVSQPSTRDAIL-WGADYAPLTYLAEPMRLFSSMFFHFGL 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM--------SYRFCNS----- 231
HLM+N ++L G E++ G ++G+Y + + S + SYR
Sbjct: 80 IHLMLNMWALYIFGSVAEQLFGRMYFIGLYMCAGLMGSLLSGYMNIQDSYRLIEGGVANP 139
Query: 232 ---PAV--GASGAIFGLVGSFAVFIM-----RHRNILGGGKEELQHLAKVIIFNMAIGLL 281
PAV GASGA+ GL S V + + R IL + + L V+ N+A+G +
Sbjct: 140 DLLPAVSAGASGAVMGLGASLTVLALLPMLPQQRFIL-----DKKTLVMVMGLNLALGFM 194
Query: 282 IKGIDNWGH 290
I GI+N H
Sbjct: 195 ISGINNAAH 203
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++G Q +K+I+ +A +L
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELIG------QEHSKMILTLLAFAVL 164
Query: 282 IKGIDN 287
+ I++
Sbjct: 165 MSFINS 170
>gi|227904420|ref|ZP_04022225.1| Rhomboid family protein [Lactobacillus acidophilus ATCC 4796]
gi|227867795|gb|EEJ75216.1| Rhomboid family protein [Lactobacillus acidophilus ATCC 4796]
Length = 226
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 136 ILLAVNVLV--YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCY 192
I+L V LV ++ + L+ GA N + G Q+WRL T+ FLH + HL+ N
Sbjct: 18 IILVVVFLVEMFLGGSENVNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGVMHLVSNAV 77
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVF 250
+ +G ME I G R+L Y + I + MS F + GAS A+FGL G+
Sbjct: 78 IIYYMGQYMEPIMGHTRFLVTYLLAEIGGNLMSLAFSADRGLSAGASTALFGLFGAMTAI 137
Query: 251 IMRH-RN--ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+R+ RN I G++ L + + N+A+ + + GID WGH
Sbjct: 138 GLRNFRNPMISYLGRQAL----VLALINLALDIFVPGIDIWGH 176
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T FLHA HL+ N S+ P +E++ G R+L VY S + + +
Sbjct: 53 VANGEWWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++G Q +K+I+ +A +L
Sbjct: 113 Y--FTEPLDYLHVGASGAIFGLFGVYLFMVLFRKELIG------QDNSKMILTLLAFAVL 164
Query: 282 IKGIDN 287
+ I++
Sbjct: 165 MSFINS 170
>gi|356534153|ref|XP_003535622.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 369
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++++++ Q WRL T +LHA + HL+ N SL IG +E+ G + +Y S S
Sbjct: 109 DNVVNRHQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I+ N+ IG+L
Sbjct: 169 VLSSLFIRDHISVGASGALFGLLGAMLSELITNWTIYSNKAMALITLLVIIVINLGIGIL 228
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 229 -PHVDNFAH 236
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++G Q +K+I+ +A +L
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELIG------QEHSKMILTLLAFAVL 164
Query: 282 IKGIDN 287
+ I++
Sbjct: 165 MSFINS 170
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 117 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 176
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
Y N ++GASGA++GL G+ AV + R
Sbjct: 177 YLIAAPNQGSLGASGAVYGLFGATAVLMRR 206
>gi|430756886|ref|YP_007210796.1| hypothetical protein A7A1_1394 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021406|gb|AGA22012.1| Hypothetical protein YdcA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 199
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVMLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+ +F++ RN L G Q +K+II +A +L+ I++
Sbjct: 136 Y-LFMVLFRNELIG-----QEHSKMIITLLAFAVLMSFINS 170
>gi|226494277|ref|NP_001151264.1| membrane protein [Zea mays]
gi|195645390|gb|ACG42163.1| membrane protein [Zea mays]
Length = 414
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 132 SSATLLEMGALETSKVTKDHEGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIR 191
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 192 IGTLYVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTL 251
Query: 269 AKVIIFNMAIGLLIKGIDNWGH 290
+I+ N+A+G+L +DN+ H
Sbjct: 252 VMIILINLAVGIL-PHVDNFAH 272
>gi|331656677|ref|ZP_08357639.1| outer membrane protein [Escherichia coli TA206]
gi|331054925|gb|EGI26934.1| outer membrane protein [Escherichia coli TA206]
Length = 502
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|16077528|ref|NP_388342.1| hypothetical protein BSU04610 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308284|ref|ZP_03590131.1| hypothetical protein Bsubs1_02613 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312606|ref|ZP_03594411.1| hypothetical protein BsubsN3_02589 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317529|ref|ZP_03598823.1| hypothetical protein BsubsJ_02548 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321805|ref|ZP_03603099.1| hypothetical protein BsubsS_02619 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314135|ref|YP_004206422.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402774706|ref|YP_006628650.1| protein YdcA [Bacillus subtilis QB928]
gi|452916522|ref|ZP_21965145.1| rhomboid family protein [Bacillus subtilis MB73/2]
gi|81345920|sp|P96617.1|YDCA_BACSU RecName: Full=Putative rhomboid protease YdcA
gi|1881271|dbj|BAA19298.1| ydcA [Bacillus subtilis]
gi|2632761|emb|CAB12268.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320020409|gb|ADV95395.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402479891|gb|AFQ56400.1| YdcA [Bacillus subtilis QB928]
gi|452114662|gb|EME05061.1| rhomboid family protein [Bacillus subtilis MB73/2]
Length = 199
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + +F++ RN L G Q +K+II +A +L
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNELIG-----QEHSKMIITLLAFAVL 164
Query: 282 IKGIDN 287
+ I++
Sbjct: 165 MSFINS 170
>gi|16803377|ref|NP_464862.1| hypothetical protein lmo1337 [Listeria monocytogenes EGD-e]
gi|284801722|ref|YP_003413587.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284994864|ref|YP_003416632.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404283828|ref|YP_006684725.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404410635|ref|YP_006696223.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|405758384|ref|YP_006687660.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|16410753|emb|CAC99415.1| lmo1337 [Listeria monocytogenes EGD-e]
gi|284057284|gb|ADB68225.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284060331|gb|ADB71270.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404230461|emb|CBY51865.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|404233330|emb|CBY54733.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404236266|emb|CBY57668.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|441471011|emb|CCQ20766.1| Rhomboid protease gluP [Listeria monocytogenes]
gi|441474138|emb|CCQ23892.1| Rhomboid protease gluP [Listeria monocytogenes N53-1]
Length = 512
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|47095921|ref|ZP_00233524.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912011|ref|ZP_05262023.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|254936338|ref|ZP_05268035.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|258611432|ref|ZP_05232285.2| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|386043648|ref|YP_005962453.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|386046989|ref|YP_005965321.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|386050313|ref|YP_005968304.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|386053590|ref|YP_005971148.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
gi|47015667|gb|EAL06597.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599975|gb|EEW13300.1| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|258608928|gb|EEW21536.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|293589976|gb|EFF98310.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|345533980|gb|AEO03421.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|345536882|gb|AEO06322.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|346424159|gb|AEO25684.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|346646241|gb|AEO38866.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
Length = 518
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 335 NLLIDVFSSQIDIAGH 350
>gi|431412586|ref|ZP_19512021.1| S54 family peptidase [Enterococcus faecium E1630]
gi|431759476|ref|ZP_19548089.1| S54 family peptidase [Enterococcus faecium E3346]
gi|430589541|gb|ELB27669.1| S54 family peptidase [Enterococcus faecium E1630]
gi|430625986|gb|ELB62579.1| S54 family peptidase [Enterococcus faecium E3346]
Length = 232
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT L + +V+I F + G L+ ++WRL T F+H + H ++N
Sbjct: 18 WTYAFLGIQTIVFIIMELFPRLEIPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G A
Sbjct: 78 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFG--A 135
Query: 249 VFIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI+ H ++ ++H I GLL +D WGH
Sbjct: 136 LFILGFHFKYNTAIQQLVRHFLLFIAMTFVFGLLDTSVDVWGH 178
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|386757063|ref|YP_006230279.1| rhomboid family protein [Bacillus sp. JS]
gi|384930345|gb|AFI27023.1| Rhomboid family protein [Bacillus sp. JS]
Length = 199
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 12/132 (9%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N + G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I
Sbjct: 47 AGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ +Y P VGASGAIFGL G + +F++ RN L G Q +K+I+
Sbjct: 107 IGNIGTY--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNELIG-----QEHSKMILIL 158
Query: 276 MAIGLLIKGIDN 287
+A +L+ I++
Sbjct: 159 LAFAVLMSFINS 170
>gi|257898204|ref|ZP_05677857.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293570647|ref|ZP_06681698.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430841528|ref|ZP_19459447.1| S54 family peptidase [Enterococcus faecium E1007]
gi|431073211|ref|ZP_19494755.1| S54 family peptidase [Enterococcus faecium E1604]
gi|431586112|ref|ZP_19520627.1| S54 family peptidase [Enterococcus faecium E1861]
gi|431737438|ref|ZP_19526392.1| S54 family peptidase [Enterococcus faecium E1972]
gi|431739879|ref|ZP_19528798.1| S54 family peptidase [Enterococcus faecium E2039]
gi|257836116|gb|EEV61190.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291609318|gb|EFF38589.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430494304|gb|ELA70554.1| S54 family peptidase [Enterococcus faecium E1007]
gi|430566783|gb|ELB05879.1| S54 family peptidase [Enterococcus faecium E1604]
gi|430593290|gb|ELB31276.1| S54 family peptidase [Enterococcus faecium E1861]
gi|430599095|gb|ELB36811.1| S54 family peptidase [Enterococcus faecium E1972]
gi|430604006|gb|ELB41506.1| S54 family peptidase [Enterococcus faecium E2039]
Length = 232
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT L + +V+I F + G L+ ++WRL T F+H + H ++N
Sbjct: 18 WTYAFLGIQTIVFIIMELFPRLEIPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G A
Sbjct: 78 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFG--A 135
Query: 249 VFIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+FI+ H ++ ++H I GLL +D WGH
Sbjct: 136 LFILGFHFKYNTAIQQLVRHFLLFIAMTFVFGLLDTSVDVWGH 178
>gi|404413413|ref|YP_006699000.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
gi|404239112|emb|CBY60513.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
Length = 512
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 329 NLLIDVFSSQIDIAGH 344
>gi|297847644|ref|XP_002891703.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297337545|gb|EFH67962.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 309
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA L+++G+ WRL + +LH HLM N SL IG +E+ G R +Y S
Sbjct: 94 GALERRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISG 153
Query: 219 IASSAMSYRFC------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+ S MS C +VGASGA+FGL+G+ ++ + I L L +I
Sbjct: 154 LGGSLMS---CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLVLII 210
Query: 273 IFNMAIGLLIKGIDNWGH 290
+ N+++G L + +DN H
Sbjct: 211 VLNLSVGFLPR-VDNSAH 227
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 134 TNILLAVNVLVY-----IAQFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIA 185
T+ L+A V+VY IAQ T +L+ GA+ ++ G++WRL T+ FLH +
Sbjct: 15 TSALVAFMVVVYLWEALIAQSFTISSRVLYETGAQFGPIVLHYGEWWRLLTAGFLHVTAS 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
HL+ N +L IG +E GP R+L ++ ++ I+ + MS F N + GASG +FGL
Sbjct: 75 HLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGNLMSLAFGAMNVISAGASGGVFGL 134
Query: 244 VGS 246
G+
Sbjct: 135 FGA 137
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
Y N ++GASGA++GL G+ AV + R
Sbjct: 192 YLIAAPNQGSLGASGAVYGLFGATAVLMRR 221
>gi|300927237|ref|ZP_07142969.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|301329188|ref|ZP_07222179.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|450211629|ref|ZP_21894406.1| rhomboid family protein [Escherichia coli O08]
gi|300416803|gb|EFK00114.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|300844476|gb|EFK72236.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|449322428|gb|EMD12420.1| rhomboid family protein [Escherichia coli O08]
Length = 625
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|239916634|ref|YP_002956192.1| hypothetical protein Mlut_00720 [Micrococcus luteus NCTC 2665]
gi|239837841|gb|ACS29638.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
Length = 313
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSA 178
R F T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A
Sbjct: 83 RRTGFAASPVTWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYA 142
Query: 179 FLH--ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAV 234
+H + HL++N +L IG +E G R+L +Y SA+ + + + P V
Sbjct: 143 LVHDVSGPTHLLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVV 202
Query: 235 GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
GASGA++G+ FA + R + GG +++ +A +I N+ L+ G+
Sbjct: 203 GASGAVYGM---FAALFLLTR-VRGG---QVRSIAVLIGLNLVFSFLLPGV 246
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|326514946|dbj|BAJ99834.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+V+ SL IG +E+ G R +Y S S
Sbjct: 102 NKVVHQHQGWRLISCIWLHAGLIHLVVDMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 161
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
MS F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 162 VMSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKVAAIITLLFIIAINVAIGI 221
Query: 281 LIKGIDNWGH 290
L DN+ H
Sbjct: 222 LPHA-DNFAH 230
>gi|255635820|gb|ACU18258.1| unknown [Glycine max]
Length = 239
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++++++ Q WRL T +LHA + HL+ N SL IG +E+ G + +Y S S
Sbjct: 108 DNVVNRHQGWRLFTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGS 167
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I+ N+ IG+L
Sbjct: 168 VLSSLFIRDHISVGASGALFGLLGAMLSELITNWTIYSNKAMALITLLVIIVINLGIGIL 227
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 228 -PHVDNFAH 235
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL------IDKGQFWRLATSAFLHANI 184
T IL+ +N V++A A L L G + I GQ+ RL TS FLH
Sbjct: 77 TKILIGINAAVFLAVLAMPGLAIGLELLGRYVEYYGAPEEGISTGQYHRLLTSVFLHVEW 136
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H+ N +L IG +E G RYL +Y S + SA+ Y N+P +GASGA+ G
Sbjct: 137 WHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSALVYLLTAPNTPTLGASGAVCG 196
Query: 243 LVGSFAVFIMRHR 255
L+G+ V R R
Sbjct: 197 LLGATVVLARRLR 209
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WR T FLH+ AH++ N +SL GP +EK+ G ++ +Y +
Sbjct: 47 AGVNLYIAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGT 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
++ +Y + VG+SGAIF L G + I+ +++L ++ VI
Sbjct: 107 LANVATYLVNPLSYSHVGSSGAIFALFGFYLAIILFKKHLLSRQNSQIVLTITVI 161
>gi|281414912|ref|ZP_06246654.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
gi|289706946|ref|ZP_06503281.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
gi|289556271|gb|EFD49627.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
Length = 258
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 16/161 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLH--ANIAH 186
T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A +H + H
Sbjct: 38 TWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTH 97
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLV 244
L++N +L IG +E G R+L +Y SA+ + + + P VGASGA++G+
Sbjct: 98 LLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGM- 156
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
FA + R + GG +++ +A +I N+ L+ G+
Sbjct: 157 --FAALFLLTR-VRGG---QVRSIAVLIGLNLVFSFLLPGV 191
>gi|430843907|ref|ZP_19461805.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430854949|ref|ZP_19472660.1| S54 family peptidase [Enterococcus faecium E1392]
gi|430496497|gb|ELA72556.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430547487|gb|ELA87410.1| S54 family peptidase [Enterococcus faecium E1392]
Length = 232
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT L + +V++ F + G L+ ++WRL T F+H + H ++N
Sbjct: 18 WTYAFLGIQTVVFLMMELFPRLEIPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G+
Sbjct: 78 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALF 137
Query: 249 V--FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ F +H + ++ ++H I+ GLL +D WGH
Sbjct: 138 ILGFHFKHNPAI---QQLVRHFLLFIVLTFVFGLLDTSVDVWGH 178
>gi|153853648|ref|ZP_01995028.1| hypothetical protein DORLON_01019 [Dorea longicatena DSM 13814]
gi|149753803|gb|EDM63734.1| peptidase, S54 family [Dorea longicatena DSM 13814]
Length = 204
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 134 TNILLAVNVLVYIA-QF--ATQDK--LLLWGAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T +L AVNV+V++ F T+D +L GA + LI +G+++RL +S FLH HL
Sbjct: 11 TILLAAVNVIVFLVLSFLGMTEDGEFMLKHGAMYVPYLIQRGEYYRLFSSMFLHFGYDHL 70
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF---CNSPAV--GASGAIFG 242
+ N L ++G +E G ++L VYF S +A + +S + S A+ GASGAIFG
Sbjct: 71 VNNMIVLVAMGWNLELDIGKVKFLIVYFVSGLAGNVLSAWWDIQTGSMAISAGASGAIFG 130
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++G+ +R+R + G + L +I+ + G G+DN H
Sbjct: 131 IIGALLYVAIRNRGRI--GDISGRGLVFMIVLTLYYGFTSGGVDNMAH 176
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L +NV VY+ + L L G ++++ G +W+L T+ F+H NI
Sbjct: 14 TFTLFLINVAVYVVEAVLSGGNFLSIRGSVLALLGQWNYAVLNYGYWWQLFTAMFVHVNI 73
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIF 241
H+ N Y L ++G +E++ GPRR + Y S + + ++ F P + GASGA+F
Sbjct: 74 IHIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGNVLT-LFLKPPMTVSAGASGALF 132
Query: 242 GLVGS 246
G+VG+
Sbjct: 133 GIVGA 137
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T ++A+ VL+Y+ T+ L L A++ + W + T AFLH I H++ N
Sbjct: 16 TYAMMAICVLMYVVTLLVPTTKLSLALVPARLMA-----HPWTVLTGAFLHGGIMHILFN 70
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGL 243
SL +G +E + G R+L +Y SA+ SA +C P+ VGASGA+FGL
Sbjct: 71 MLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWCLIQPSEIFVSTVGASGAVFGL 130
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G AVF+++ LGG + + ++ N+ G ++ GI GH
Sbjct: 131 FG--AVFVLQR---LGG--SDTTAILTLLGINLVYGFMVSGISWQGH 170
>gi|300693980|ref|YP_003749953.1| peptidase s54, rhomboid family [Ralstonia solanacearum PSI07]
gi|299076017|emb|CBJ35328.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
PSI07]
gi|344169739|emb|CCA82101.1| putative peptidase S54, rhomboid family [blood disease bacterium
R229]
Length = 197
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 135 NILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLM 188
N L+ NV+V+IA+ D LL LW + G F W+L T AFLHA++ HL+
Sbjct: 3 NSLILANVIVFIAELFAGDTLLRSFALWPPGAAGIGADGGFSPWQLVTYAFLHASVPHLV 62
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-------YRFCNSPAVGASGAIF 241
N + + G +E+ G R GV + +++ S+A + + F P VGASG +F
Sbjct: 63 FNMFGMFMFGRDVERALG-RVRTGVLYLASVLSAAFTQIAVVGFFTFPAGPIVGASGGVF 121
Query: 242 GLVGSFAVFIMRHRNIL 258
GL+ ++AV R +L
Sbjct: 122 GLLLAYAVLFPRRMILL 138
>gi|442770468|gb|AGC71182.1| rhomboid family serine protease [uncultured bacterium A1Q1_fos_568]
Length = 247
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA L+ +G++WRL T FLHA I HL +N L + +E G R+ +Y S
Sbjct: 69 GALFGPLVAQGEWWRLLTGGFLHAGIMHLGMNMLMLWFLSQELEPALGRLRFAVLYVVSL 128
Query: 219 IASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ + SP VGASGA+FGL+G+ V +R R +A +++ N+
Sbjct: 129 LGGALGVLLLSPVSPTVGASGAVFGLLGALVVLQLRARQ-----NPWQSGIAGLVLVNVL 183
Query: 278 IGLLIKGIDNWGH 290
L+ GI GH
Sbjct: 184 FTFLMPGISIGGH 196
>gi|418995635|ref|ZP_13543249.1| rhomboid family protein [Escherichia coli DEC1A]
gi|377849025|gb|EHU14001.1| rhomboid family protein [Escherichia coli DEC1A]
Length = 199
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|227892800|ref|ZP_04010605.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
gi|227865441|gb|EEJ72862.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
Length = 226
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+ GA N + G Q+WRL T+ FLH + HL+ N + +G +E I G R
Sbjct: 35 STNVLMKMGAMNNLAVVAGHQWWRLFTAQFLHIGVMHLVSNAVIIYYMGQYIEPIMGHYR 94
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
YL Y + I + S F + GAS A+FGL G+ + RNI L
Sbjct: 95 YLATYLLAGIGGNLFSLAFSADRGLSAGASTALFGLFGAMTA--IGLRNIHNPMISFLGR 152
Query: 268 LAKVI-IFNMAIGLLIKGIDNWGH 290
A V+ I N+A+ + I GID WGH
Sbjct: 153 QAFVLAIINLALDIFIPGIDIWGH 176
>gi|449093160|ref|YP_007425651.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
gi|449027075|gb|AGE62314.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
Length = 208
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+ +F++ RN L G Q +K+II +A +L+ I++
Sbjct: 136 Y-LFMVLFRNELIG-----QEHSKMIITLLAFAVLMSFINS 170
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + + + G++WRL T+ FLH +AH+ +N SL +G +E G RYL VYF +
Sbjct: 24 GDLVRAYVADGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYLMVYFIAL 83
Query: 219 IASSA--MSYRFCNSPAVGASGAIFGLVG 245
SA M + N + GASGAI+GL+G
Sbjct: 84 FGGSAAVMLFEAANVRSAGASGAIYGLMG 112
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L++ Q A+ D L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 81 TYALIGLNLLMFALQMASPDLDRALGLWPPAA----ADGELYRLLTSAFLHFSVTHIAFN 136
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +G +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 137 MLALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 194
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
F++ R +++ + +I N+A LI
Sbjct: 195 FVVGKRL-----NMDVRSVVMIIGLNLAFTFLIP 223
>gi|430851801|ref|ZP_19469536.1| S54 family peptidase [Enterococcus faecium E1258]
gi|430542383|gb|ELA82491.1| S54 family peptidase [Enterococcus faecium E1258]
Length = 232
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 133 WTNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
WT L + +V++ F + G L+ ++WRL T F+H + H ++N
Sbjct: 18 WTYAFLEIQTVVFLMMELFPRLEIPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
L +G +E I G R+ +Y S I + S+ F N + GAS +IFGL G+
Sbjct: 78 SLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALF 137
Query: 249 V--FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ F +H + ++ ++H I+ GLL +D WGH
Sbjct: 138 ILGFHFKHNPAI---QQLVRHFLLFIVLTFVFGLLDTSVDVWGH 178
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-------FATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L +NV VYI + F+ D L G +++ G +W+L T+ F+H I
Sbjct: 14 TFTLFLINVAVYIVEAILSGNPFSISIDVLARLGQWNYAVLSYGWWWQLVTAMFVHVGIL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
H+ N Y L +G +E I GP+R + VY S +A + ++ NS + GASGA+FG+
Sbjct: 74 HIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFLLPANSVSAGASGALFGI 133
Query: 244 VGSFAV 249
VG+ +
Sbjct: 134 VGTLII 139
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 31/205 (15%)
Query: 100 LSFFNGGGTRKNSGHEGTSHLDTARTNLF--IGRQWTNILLAVNVLVYIAQFATQDKLLL 157
L ++GG K + + + TA+ +F +G TN+++A+ V AT +L
Sbjct: 63 LKIYSGG---KTQAPQPAAAVKTAKNKVFAKLGYSVTNVIIAITV-------ATSLLAML 112
Query: 158 WGAK-----INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A N ++ + WR T +H + HL +N YSL +G ++E++ G RYL
Sbjct: 113 IPAVGNFLFFNPILGYKEPWRFLTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLA 172
Query: 213 VYFSSAIASS-------AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+Y +S + S +S VGASGAIFGL AV++++ ++ +
Sbjct: 173 LYVASGLGGSLAVLLWAMVSLDSFYHVTVGASGAIFGLFA--AVYVVQRKS-----GMDA 225
Query: 266 QHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + ++ N+A+G I + GH
Sbjct: 226 RAMGILLAVNLALGFTISNVSWQGH 250
>gi|300780117|ref|ZP_07089973.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
gi|300534227|gb|EFK55286.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
Length = 215
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 171 FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-C 229
+ R TS FLH +I+HL+VN + L IGP +E+ G Y+ Y + + SA F
Sbjct: 59 YLRALTSGFLHVDISHLVVNLFVLVFIGPVVERFVGTGPYVAAYLACILGGSAAVLFFGF 118
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
P GASGA++GL+ R+R +L+ ++ N+ L++ G+ WG
Sbjct: 119 AQPTAGASGALYGLMAILVAIAARNR-------ADLRAPLVLVAGNLVFTLVMPGVSLWG 171
Query: 290 H 290
H
Sbjct: 172 H 172
>gi|417128656|ref|ZP_11975443.1| peptidase, S54 family [Escherichia coli 97.0246]
gi|386143612|gb|EIG90088.1| peptidase, S54 family [Escherichia coli 97.0246]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|320528438|ref|ZP_08029600.1| peptidase, S54 family protein [Solobacterium moorei F0204]
gi|320131352|gb|EFW23920.1| peptidase, S54 family protein [Solobacterium moorei F0204]
Length = 266
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 142 VLVYIAQFATQDKL---LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
V V+I F + + +L GA + G+FWRL T+ F+H ++ HL +N +L S+G
Sbjct: 19 VWVFIQLFPSDSTITNAILIGAFYKPFVLAGEFWRLLTAGFVHVHLWHLAMNMMALLSLG 78
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMR 253
E + G +RYL + S + S NS VG SG I+GL+ ++ I+R
Sbjct: 79 KIFEPLLGMKRYLMILIPSIVVGSLFVLTSPENSFVVGLSGGIYGLLAAYVTLILR 134
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 134 TNILLAVNVLVYIAQF-ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T ++A+ VL+Y+ A KL L A + + + W + T AFLH I H++ N
Sbjct: 77 TYAMMAICVLMYVVTLLAPTTKLSL--ALVPAWL-MAHPWTVLTGAFLHGGIMHILFNML 133
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGLVG 245
SL +G +E + G R+L +Y SA+ SA +C P+ VGASGA+FGL G
Sbjct: 134 SLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWCLIQPSEIFVSTVGASGAVFGLFG 193
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
AVF+++ LGG + + ++ N+ G ++ GI GH
Sbjct: 194 --AVFVLQR---LGG--SDTTAILTLLGINLVYGFMVSGISWQGH 231
>gi|422022178|ref|ZP_16368686.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
gi|414096671|gb|EKT58327.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
Length = 287
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 31/187 (16%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T+ L+ +N+++Y Q FA+ ++ LLL+GA + L G +WR S LH+N H
Sbjct: 27 TSGLVLLNIVIYFYQLHFASPLDSRENNLLLFGANVYQLSLTGDWWRYPISMLLHSNGVH 86
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSPA-------- 233
L N +L IG E+ G + L +YF S I ++ S Y N P
Sbjct: 87 LAFNSLALFVIGIECERNYGKSKLLAIYFISGIGAALFSAYWQYYEDINDPTLTDNMVYI 146
Query: 234 ---VGASGAIFGLVGSFAVFIMR-------HRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
VGASGAI GL + +++ + + I K L ++ +I+ + GL
Sbjct: 147 TVGVGASGAIMGLAAASVIYLYQAIRVPNINPTIHAQQKRLLYNILGMIVLTLISGLQ-A 205
Query: 284 GIDNWGH 290
G+DN H
Sbjct: 206 GVDNAAH 212
>gi|333369428|ref|ZP_08461543.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332971152|gb|EGK10116.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 248
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL V +++ Q AT + LL WGA + WRL +S FLH +
Sbjct: 13 TALLLLSFVALFVIQVATGVDINQPSLEDLLKWGANALPYTIGYEPWRLVSSGFLHIGLM 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM-SYR-----FCNSPA----VG 235
HL+ NC+++ G E G ++L ++ S + + + SY F N A G
Sbjct: 73 HLLFNCFAMYYFGQVAEVTFGSVKFLLLFLLSTVGGNLLNSYVTLWQIFHNEGAPGISAG 132
Query: 236 ASGAIFGLVGSFAVFIMRHRNILG----GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
ASG I G+ + + + + +L GG +L+ LA ++ N+ G + GIDN GH
Sbjct: 133 ASGGIMGIGMALLMVELLKKTLLNFPAKGGNPQLKSLAIIMGINLMYGFAVPGIDNAGH 191
>gi|356575933|ref|XP_003556090.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]
Length = 329
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++++++ Q WRL T +LHA + HL+ N SL IG +E+ G + +Y S S
Sbjct: 108 DNVVNRHQGWRLFTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGS 167
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I+ N+ IG+L
Sbjct: 168 VLSSLFIRDHISVGASGALFGLLGAMLSELITNWTIYSNKAMALITLLVIIVINLGIGIL 227
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 228 -PHVDNFAH 235
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNASH 493
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNASH 493
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 37/187 (19%)
Query: 134 TNILLAVNVLVYIAQFATQ-------------------DKLLLWGAKINSL--------- 165
T L+A+NVL+ + A+ L WGA +
Sbjct: 40 TKALIAINVLIMLVSIASDRGGDAAAGGTGFGGLMGGSTPLTEWGAVLGRAMFLDGSIGG 99
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL T+ FLH I HL++N ++L +G ++E + GP R+ +YF + +
Sbjct: 100 VAEGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAV 159
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F N + GAS AIFGL A+F++ R LG + + +++ N+ +
Sbjct: 160 YVFSPPNQMSAGASTAIFGLFA--AIFVIMRR--LG---RDTSAILPILVINLIFTFTVP 212
Query: 284 GIDNWGH 290
I GH
Sbjct: 213 QISIAGH 219
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNASH 493
>gi|424919232|ref|ZP_18342596.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392855408|gb|EJB07929.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 579
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T LLAV V VY + A + L+L G S+++ ++WRL T+ F+H
Sbjct: 206 TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVEGAEWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
I HL NC+ L G E++ G R + ++F+SA+ S S N+ VGASG
Sbjct: 266 GGIVHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVWINDVNTVGVGASGG 325
Query: 240 IFGLVGSFAVFIMRHRN 256
I GL + +R R+
Sbjct: 326 IVGLFAAVIAGSIRFRS 342
>gi|315282195|ref|ZP_07870654.1| rhomboid family protein, partial [Listeria marthii FSL S4-120]
gi|313614157|gb|EFR87842.1| rhomboid family protein [Listeria marthii FSL S4-120]
Length = 302
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH + HL N L +G E+I G RY+ +
Sbjct: 1 LIKWGGKFNPLIYAGEWWRFISPIFLHNGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 60
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 61 LLGGICGNVASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 118
Query: 275 NMAIGLLIKGIDNWGH 290
N+ I + ID GH
Sbjct: 119 NLLIDVFSTQIDIAGH 134
>gi|282882140|ref|ZP_06290781.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
gi|281298170|gb|EFA90625.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
Length = 237
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPTFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAV 249
Y L +G E + G RYL +Y + + + +SY F N + + GAS +++GL G
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIG 143
Query: 250 FIMRHRN 256
++R+++
Sbjct: 144 LMIRYKD 150
>gi|157159255|ref|YP_001461827.1| S54 family peptidase [Escherichia coli E24377A]
gi|157081285|gb|ABV20993.1| peptidase, S54 (rhomboid) family [Escherichia coli E24377A]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 187 FILTGLLWGLF-GGIDNAAH 205
>gi|191168690|ref|ZP_03030470.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|309795475|ref|ZP_07689892.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
gi|190901282|gb|EDV61051.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|308120850|gb|EFO58112.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNASH 493
>gi|417688423|ref|ZP_12337667.1| rhomboid family protein [Shigella boydii 5216-82]
gi|332094328|gb|EGI99379.1| rhomboid family protein [Shigella boydii 5216-82]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|416287203|ref|ZP_11648807.1| Putative membrane protein [Shigella boydii ATCC 9905]
gi|320178447|gb|EFW53415.1| Putative membrane protein [Shigella boydii ATCC 9905]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|344175451|emb|CCA88130.1| putative peptidase S54, rhomboid family [Ralstonia syzygii R24]
Length = 197
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 135 NILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLM 188
N L+ NV+V++A+ D LL LW + G F W+L T AFLHA++ HL+
Sbjct: 3 NSLIVANVIVFVAELFAGDTLLRSFALWPPGAAGIGADGGFSPWQLVTYAFLHASVPHLV 62
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS------YRFCNSPAVGASGAIFG 242
N + + G +E+ G R +Y +S ++++ + F P VGASG +FG
Sbjct: 63 FNMFGMFMFGRDVERALGRARTGALYLASVLSAAFTQMAVVGLFTFPAGPIVGASGGVFG 122
Query: 243 LVGSFAVFIMRHRNIL 258
L+ ++AV R +L
Sbjct: 123 LLLAYAVLFPRRMILL 138
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|419012186|ref|ZP_13559551.1| rhomboid family protein [Escherichia coli DEC1D]
gi|377862951|gb|EHU27758.1| rhomboid family protein [Escherichia coli DEC1D]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|417754419|ref|ZP_12402514.1| rhomboid family protein [Escherichia coli DEC2B]
gi|419000808|ref|ZP_13548367.1| rhomboid family protein [Escherichia coli DEC1B]
gi|419006320|ref|ZP_13553776.1| rhomboid family protein [Escherichia coli DEC1C]
gi|419017090|ref|ZP_13564416.1| rhomboid family protein [Escherichia coli DEC1E]
gi|419022782|ref|ZP_13570024.1| rhomboid family protein [Escherichia coli DEC2A]
gi|419027591|ref|ZP_13574790.1| rhomboid family protein [Escherichia coli DEC2C]
gi|419033082|ref|ZP_13580180.1| rhomboid family protein [Escherichia coli DEC2D]
gi|419038371|ref|ZP_13585431.1| rhomboid family protein [Escherichia coli DEC2E]
gi|377851121|gb|EHU16076.1| rhomboid family protein [Escherichia coli DEC1C]
gi|377853455|gb|EHU18354.1| rhomboid family protein [Escherichia coli DEC1B]
gi|377867064|gb|EHU31828.1| rhomboid family protein [Escherichia coli DEC1E]
gi|377868420|gb|EHU33164.1| rhomboid family protein [Escherichia coli DEC2A]
gi|377879365|gb|EHU43938.1| rhomboid family protein [Escherichia coli DEC2B]
gi|377883501|gb|EHU48019.1| rhomboid family protein [Escherichia coli DEC2D]
gi|377885474|gb|EHU49969.1| rhomboid family protein [Escherichia coli DEC2C]
gi|377898615|gb|EHU62975.1| rhomboid family protein [Escherichia coli DEC2E]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|197123290|ref|YP_002135241.1| rhomboid family protein [Anaeromyxobacter sp. K]
gi|196173139|gb|ACG74112.1| Rhomboid family protein [Anaeromyxobacter sp. K]
Length = 360
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 147 AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
A +T D LL GA ++ + G+ WRL T+AFLH HL+ N + +E+
Sbjct: 38 AHGSTTDPSLLARMGALDHARVWDGEPWRLLTAAFLHVGPVHLLWNLAFGVPLCAVVERA 97
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
G RR+L VY +SA+ SA S + GASGA+FG+ G+ +R +G +
Sbjct: 98 IGTRRFLAVYLASALGGSAASLLAAMPMSAGASGALFGVAGAMLAL---YRRAVGSWRAF 154
Query: 265 LQH----LAKVIIFNMAIGLLIKGIDNWGH 290
L L +++ A+ L ID W H
Sbjct: 155 LASRDIILNGILLVGFALAGLFLPIDGWAH 184
>gi|433457891|ref|ZP_20415857.1| rhomboid family membrane protein [Arthrobacter crystallopoietes
BAB-32]
gi|432194164|gb|ELK50817.1| rhomboid family membrane protein [Arthrobacter crystallopoietes
BAB-32]
Length = 225
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 158 WGAKINSL---IDKGQFWRLATSAFLHAN--IAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
W A + +L I + WR+ TSAFLH+ I H+ N Y+L +G +E + G R+L
Sbjct: 45 WYAPLYTLPNPIYDAEPWRMITSAFLHSQGFILHIAFNLYALWILGNHLEPLLGRLRFLA 104
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y SA S N P +GASGA+FGL G A+FI++ + GG +++ L
Sbjct: 105 LYLLSAFGGSVAVLLLSAPNVPVLGASGAVFGLFG--ALFIVQRQR--GG---DVKSLLV 157
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+I N+ +G ++ GI H
Sbjct: 158 LIGINVVLGFVVSGISWQAH 177
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|425298821|ref|ZP_18688871.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
gi|408221824|gb|EKI45757.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 32/153 (20%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNI 257
Y ++ VGASGA+FGL ++ V HR +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRRL 221
>gi|215485689|ref|YP_002328120.1| hypothetical protein E2348C_0549 [Escherichia coli O127:H6 str.
E2348/69]
gi|215263761|emb|CAS08097.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|312965097|ref|ZP_07779334.1| rhomboid family protein [Escherichia coli 2362-75]
gi|312290188|gb|EFR18071.1| rhomboid family protein [Escherichia coli 2362-75]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|297837099|ref|XP_002886431.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
gi|297332272|gb|EFH62690.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
Length = 317
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y S + S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F S +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L +
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223
Query: 284 GIDNWGH 290
+DN+ H
Sbjct: 224 -VDNFAH 229
>gi|15221690|ref|NP_176500.1| rhomboid -like 2 [Arabidopsis thaliana]
gi|12323258|gb|AAG51610.1|AC010795_14 membrane protein, putative; 61952-60281 [Arabidopsis thaliana]
gi|28393358|gb|AAO42103.1| putative membrane protein [Arabidopsis thaliana]
gi|28827620|gb|AAO50654.1| putative membrane protein [Arabidopsis thaliana]
gi|77999980|dbj|BAE46871.1| Rhomboid family protein AtRBL2 [Arabidopsis thaliana]
gi|332195937|gb|AEE34058.1| rhomboid -like 2 [Arabidopsis thaliana]
Length = 317
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y S + S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F S +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L +
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223
Query: 284 GIDNWGH 290
+DN+ H
Sbjct: 224 -VDNFAH 229
>gi|258650339|ref|YP_003199495.1| rhomboid family protein [Nakamurella multipartita DSM 44233]
gi|258553564|gb|ACV76506.1| Rhomboid family protein [Nakamurella multipartita DSM 44233]
Length = 292
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 134 TNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+AVN+ ++ A + +L L G I + + G++WRL TS FLH N+
Sbjct: 66 TFALIAVNLAFFLVTALQSRSAMDLSYSELYLRGGLIPAEVASGEYWRLLTSGFLHGNLV 125
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGASGAIFG 242
HL N SL +G +E+I G R L +Y S + +S F ++P +GASGA++G
Sbjct: 126 HLATNMLSLYWLGIPLERILGRGRMLTIYLISLLGASVSVLLF-SAPVSLTIGASGAVYG 184
Query: 243 LVGSF 247
L+G+
Sbjct: 185 LMGAL 189
>gi|417288734|ref|ZP_12076019.1| peptidase, S54 family [Escherichia coli TW07793]
gi|386247526|gb|EII93699.1| peptidase, S54 family [Escherichia coli TW07793]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+ +NV ++I F L L G + N + Q WR T+AFLH+ H+ N
Sbjct: 70 TYTLIGINVALFILSFV----LPLVGNWLFFNPAVGYRQVWRFLTTAFLHSGFMHIAFNM 125
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLV 244
+L S+G +E++ G RYL VY SAI +S + + VGASGA+FGL
Sbjct: 126 LALYSVGVELEQVLGRTRYLSVYLLSAIGASLFVLAWVLIQPSSLGTVTVGASGAVFGLF 185
Query: 245 GSFAVFIMRHRN 256
G A+F+++ ++
Sbjct: 186 G--AMFVLQKQS 195
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 476 ILTGLLWGLF-GGIDNAAH 493
>gi|253573307|ref|ZP_04850650.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846835|gb|EES74840.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLA N++++I LL +GA + GQ WRL T+ FLH HL
Sbjct: 19 TCLLLAANIVMFIMLTLNGGSRNGLTLLRFGAMSDIEPFAGQSWRLFTAMFLHNGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS---YRFCNSP--AVGASGAIFGL 243
N +++ P +E++ G RY VY S + + +S Y+F + P +VGASGA++G+
Sbjct: 79 SNSFAILVFAPPLERLLGWWRYALVYLGSGLVGNLISMGVYQFSSVPHISVGASGAVYGV 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G+F + R+++ + + L ++I + +L+ I+ H
Sbjct: 139 YGAFLYIALLQRHLM--DESSRKTLYSLLIIGVIYSVLVPKINLAAH 183
>gi|331676317|ref|ZP_08377029.1| outer membrane protein [Escherichia coli H591]
gi|417600998|ref|ZP_12251581.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|331076375|gb|EGI47657.1| outer membrane protein [Escherichia coli H591]
gi|345353483|gb|EGW85716.1| rhomboid family protein [Escherichia coli STEC_94C]
Length = 265
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|417099012|ref|ZP_11959759.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
gi|327192676|gb|EGE59614.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
Length = 579
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 342
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
W+L TS F+HA I HL++N + L G +E++ G ++Y+ V+ S I + +C+
Sbjct: 54 WQLITSIFMHATITHLLLNMFVLFFFGTYLERLIGAKKYILVFLISGIVGNLAYILYCHI 113
Query: 232 -----PAVGASGAIFGLVGSFAV 249
P+VG+SGAIFG++G+ A+
Sbjct: 114 TGSYLPSVGSSGAIFGVMGALAI 136
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 32/153 (20%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNI 257
Y ++ VGASGA+FGL ++ V HR +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRRL 221
>gi|379706281|ref|YP_005261486.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
gi|374843780|emb|CCF60842.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
Length = 247
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------IDKGQFWRLATSAFLHAN 183
T L+AVNV V+ A A Q + L+ +SL + G + R+ S FLH
Sbjct: 31 TYALIAVNVAVF-AVTAAQARSLVDNYNGSSLFLRWVMFPPAVADGDWVRVIGSGFLHYG 89
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL++N ++L +G +E + G RYL VY S + SA F +S GASGA++G
Sbjct: 90 PIHLLLNMFALYVVGRDIELVLGRSRYLAVYLVSLLGGSAAVMVFSQDSLTAGASGAVYG 149
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L G+ V ++R R + ++ +I N+ I + GI +GH
Sbjct: 150 LFGAITVILIRLR-------QNATNMFIIIGINVFISFSLPGISLFGH 190
>gi|357134029|ref|XP_003568622.1| PREDICTED: uncharacterized protein LOC100834911 [Brachypodium
distachyon]
Length = 417
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 155 LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R +
Sbjct: 139 LLKMGALETSKVAKDHEGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLRIGTL 198
Query: 214 YFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L +I
Sbjct: 199 YVISGVGGSLLSALFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTLVMII 258
Query: 273 IFNMAIGLLIKGIDNWGH 290
N+A+G+L +DN+ H
Sbjct: 259 AINLAVGIL-PHVDNFAH 275
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 187 FILTGLLWGLF-GGIDNAAH 205
>gi|116748348|ref|YP_845035.1| rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
gi|116697412|gb|ABK16600.1| Rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
Length = 284
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 154 KLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LLL GA ID+ ++W L ++++LH +I H++ N + + I P + G R L
Sbjct: 91 SLLLLGATGRIPIDQFDRWWTLLSASYLHGSILHILFNMMAFSQIAPLIVHEYGASRTLA 150
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAK 270
+Y S I +SY + +GAS A+ GL+G+ A++ R R GG G+ + ++
Sbjct: 151 IYTLSGIGGYVLSYFAGTAVTLGASAAVCGLIGA-ALYYGRSR---GGQFGQLVYRQVSG 206
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+I G L GIDNW H
Sbjct: 207 WVIGLFIFGFLFPGIDNWAH 226
>gi|183598259|ref|ZP_02959752.1| hypothetical protein PROSTU_01644 [Providencia stuartii ATCC 25827]
gi|386744560|ref|YP_006217739.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
gi|1168254|sp|P46116.1|AARA_PROST RecName: Full=Rhomboid protease AarA; AltName: Full=Intramembrane
serine protease
gi|453686|gb|AAA61597.1| 2'-N-acetyltransferase [Providencia stuartii]
gi|188020429|gb|EDU58469.1| rhomboid protease AarA [Providencia stuartii ATCC 25827]
gi|384481253|gb|AFH95048.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
Length = 281
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
I T +LL + V Y FA+ + L+L+GA I L G +WR S LH+N
Sbjct: 21 IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP------ 232
HL NC +L IG E+ G + L +Y S I ++ S Y NS
Sbjct: 81 GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDST 140
Query: 233 -----AVGASGAIFGLVGSFAVFIMR--------HRNILGGGKEELQHLAKVIIFNMAIG 279
VGASGAI G+ + +++++ H I K +L +L +I + G
Sbjct: 141 VYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLING 200
Query: 280 LLIKGIDNWGH 290
L G+DN H
Sbjct: 201 LQ-SGVDNAAH 210
>gi|337283825|ref|YP_004623299.1| Peptidase [Pyrococcus yayanosii CH1]
gi|334899759|gb|AEH24027.1| Peptidase, putative [Pyrococcus yayanosii CH1]
Length = 198
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSL 194
LL + LV+I + D ++ A+IN L+ GQ+WRL T+ F+H H +N + L
Sbjct: 18 LLTIIALVFIYELIVGFDTAIVQLAQINLLVFYAGQWWRLVTAIFVHMGFIHFALNTFWL 77
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
+G +E I G +R+L V+F SAI + +S + + GASG +FG+VG+
Sbjct: 78 FYLGMDLEGIVGSKRFLLVFFLSAIVGNVLSLFTLPLDVASGGASGGLFGIVGA 131
>gi|190892260|ref|YP_001978802.1| hypothetical protein RHECIAT_CH0002672 [Rhizobium etli CIAT 652]
gi|190697539|gb|ACE91624.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 579
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 342
>gi|357114368|ref|XP_003558972.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 331
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK 154
FA ++ + N N+G G S F+GR ++ L N L+ + AT +K
Sbjct: 47 VFAITMYYNNCPAHNANTGTRGGSKQQQQCVAGFLGR-FSFQPLRQNPLLGPSS-ATLEK 104
Query: 155 L--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+W + ++ Q WRL + +LHA I HL+ N SL IG +E+ G R
Sbjct: 105 MGALVW----DKVVHSHQGWRLLSCMWLHAGILHLLANMLSLLFIGLRLEQQFGYVRIGA 160
Query: 213 VYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S I S +S F S +VGASGA+FGL+G+ ++ + I + L V
Sbjct: 161 IYLLSGIGGSVLSSLFIRTSISVGASGALFGLLGAMLSELLTNWTIYTNKVAAVMTLLFV 220
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I N+ +G+L ++N+ H
Sbjct: 221 ITVNLVLGIL-PHVNNFAH 238
>gi|314937472|ref|ZP_07844805.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|314942131|ref|ZP_07848985.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|314947529|ref|ZP_07850944.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|314951516|ref|ZP_07854565.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|314992606|ref|ZP_07858024.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|314995459|ref|ZP_07860559.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|389868892|ref|YP_006376315.1| S54 family peptidase [Enterococcus faecium DO]
gi|424788145|ref|ZP_18214906.1| peptidase, S54 family [Enterococcus faecium V689]
gi|424797226|ref|ZP_18222844.1| peptidase, S54 family [Enterococcus faecium S447]
gi|424834719|ref|ZP_18259416.1| peptidase, S54 family [Enterococcus faecium R501]
gi|424854943|ref|ZP_18279284.1| peptidase, S54 family [Enterococcus faecium R499]
gi|424901358|ref|ZP_18324875.1| peptidase, S54 family [Enterococcus faecium R497]
gi|424950948|ref|ZP_18366086.1| peptidase, S54 family [Enterococcus faecium R496]
gi|424954911|ref|ZP_18369781.1| peptidase, S54 family [Enterococcus faecium R494]
gi|424958027|ref|ZP_18372707.1| peptidase, S54 family [Enterococcus faecium R446]
gi|424959269|ref|ZP_18373867.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|424964191|ref|ZP_18378308.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|424968837|ref|ZP_18382435.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|424969958|ref|ZP_18383500.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|424973590|ref|ZP_18386863.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|424976843|ref|ZP_18389907.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|424980661|ref|ZP_18393441.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|424983494|ref|ZP_18396077.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|424987151|ref|ZP_18399541.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|424990088|ref|ZP_18402319.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|424993747|ref|ZP_18405723.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|424998007|ref|ZP_18409725.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|425000265|ref|ZP_18411839.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|425003083|ref|ZP_18414473.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|425008016|ref|ZP_18419116.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|425011141|ref|ZP_18422055.1| peptidase, S54 family [Enterococcus faecium E422]
gi|425014985|ref|ZP_18425629.1| peptidase, S54 family [Enterococcus faecium E417]
gi|425018773|ref|ZP_18429177.1| peptidase, S54 family [Enterococcus faecium C621]
gi|425021150|ref|ZP_18431426.1| peptidase, S54 family [Enterococcus faecium C497]
gi|425023525|ref|ZP_18433641.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|425033828|ref|ZP_18438766.1| peptidase, S54 family [Enterococcus faecium 515]
gi|425034295|ref|ZP_18439198.1| peptidase, S54 family [Enterococcus faecium 514]
gi|425038841|ref|ZP_18443427.1| peptidase, S54 family [Enterococcus faecium 513]
gi|425041294|ref|ZP_18445698.1| peptidase, S54 family [Enterococcus faecium 511]
gi|425047176|ref|ZP_18451151.1| peptidase, S54 family [Enterococcus faecium 510]
gi|425047543|ref|ZP_18451492.1| peptidase, S54 family [Enterococcus faecium 509]
gi|425051726|ref|ZP_18455375.1| peptidase, S54 family [Enterococcus faecium 506]
gi|425059543|ref|ZP_18462879.1| peptidase, S54 family [Enterococcus faecium 504]
gi|425061272|ref|ZP_18464521.1| peptidase, S54 family [Enterococcus faecium 503]
gi|313590293|gb|EFR69138.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|313592898|gb|EFR71743.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|313596356|gb|EFR75201.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|313599054|gb|EFR77899.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|313643113|gb|EFS07693.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|313646079|gb|EFS10659.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|388534141|gb|AFK59333.1| S54 family peptidase [Enterococcus faecium DO]
gi|402921525|gb|EJX41965.1| peptidase, S54 family [Enterococcus faecium S447]
gi|402922053|gb|EJX42460.1| peptidase, S54 family [Enterococcus faecium R501]
gi|402923161|gb|EJX43479.1| peptidase, S54 family [Enterococcus faecium V689]
gi|402930620|gb|EJX50256.1| peptidase, S54 family [Enterococcus faecium R497]
gi|402931957|gb|EJX51504.1| peptidase, S54 family [Enterococcus faecium R496]
gi|402932028|gb|EJX51566.1| peptidase, S54 family [Enterococcus faecium R499]
gi|402935349|gb|EJX54605.1| peptidase, S54 family [Enterococcus faecium R494]
gi|402941861|gb|EJX60530.1| peptidase, S54 family [Enterococcus faecium R446]
gi|402947297|gb|EJX65517.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|402950480|gb|EJX68478.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|402951035|gb|EJX68992.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|402958278|gb|EJX75600.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|402962837|gb|EJX79744.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|402965860|gb|EJX82542.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|402968286|gb|EJX84774.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|402971363|gb|EJX87637.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|402975043|gb|EJX91030.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|402980429|gb|EJX96038.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|402981790|gb|EJX97301.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|402984436|gb|EJX99745.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|402989659|gb|EJY04575.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|402992779|gb|EJY07447.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|402993690|gb|EJY08281.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|402997135|gb|EJY11484.1| peptidase, S54 family [Enterococcus faecium E417]
gi|402997799|gb|EJY12101.1| peptidase, S54 family [Enterococcus faecium E422]
gi|403000456|gb|EJY14575.1| peptidase, S54 family [Enterococcus faecium C621]
gi|403007658|gb|EJY21214.1| peptidase, S54 family [Enterococcus faecium C497]
gi|403008233|gb|EJY21755.1| peptidase, S54 family [Enterococcus faecium 515]
gi|403009623|gb|EJY23053.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|403018441|gb|EJY31125.1| peptidase, S54 family [Enterococcus faecium 513]
gi|403020858|gb|EJY33355.1| peptidase, S54 family [Enterococcus faecium 514]
gi|403022424|gb|EJY34791.1| peptidase, S54 family [Enterococcus faecium 510]
gi|403026198|gb|EJY38202.1| peptidase, S54 family [Enterococcus faecium 511]
gi|403033405|gb|EJY44908.1| peptidase, S54 family [Enterococcus faecium 509]
gi|403034691|gb|EJY46121.1| peptidase, S54 family [Enterococcus faecium 504]
gi|403037019|gb|EJY48346.1| peptidase, S54 family [Enterococcus faecium 506]
gi|403041786|gb|EJY52779.1| peptidase, S54 family [Enterococcus faecium 503]
Length = 238
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ ++WRL T F+H + H ++N L +G +E I G R+ +Y S I +
Sbjct: 58 LVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTA 117
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAV--FIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S+ F N + GAS +IFGL G+ + F +H + ++ ++H I+ GL
Sbjct: 118 SFAFNEANVLSGGASTSIFGLFGALFILGFHFKHNPAI---QQLVRHFLLFIVLTFVFGL 174
Query: 281 LIKGIDNWGH 290
L +D WGH
Sbjct: 175 LDTSVDVWGH 184
>gi|218511093|ref|ZP_03508971.1| hypothetical protein RetlB5_29129 [Rhizobium etli Brasil 5]
Length = 466
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 84 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 138
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 139 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGSIASVW 198
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 199 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 229
>gi|313679165|ref|YP_004056904.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151880|gb|ADR35731.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 224
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDK-------GQFWRLATSAFLHANIAH 186
T +L+A NVLV+ Q + + W + K G+F R+ TS FLH H
Sbjct: 17 TRLLIAANVLVFFWQLSLGPEGFRWAVNAYGFVPKFFFADPAGEFGRIFTSMFLHGGFEH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC---NSPAVGASGAIFGL 243
++ N + L GP +E G RYL VY + I ++ + F P +GASGAI G+
Sbjct: 77 ILGNMWFLWIFGPAVEARLGGGRYLLVYLLAGIGAALVEALFLPGSTVPMIGASGAISGV 136
Query: 244 VGSF 247
+G++
Sbjct: 137 LGAY 140
>gi|319957644|ref|YP_004168907.1| rhomboid family protein [Nitratifractor salsuginis DSM 16511]
gi|319420048|gb|ADV47158.1| Rhomboid family protein [Nitratifractor salsuginis DSM 16511]
Length = 230
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G ++++ G++WRL + FLH HL +N SL +G +E YL +YF S
Sbjct: 44 GVYAPAVLEGGEWWRLLSGLFLHGGPEHLALNMISLYIVGRIVELYFPLLDYLILYFLSG 103
Query: 219 IASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG-KEELQHLAKVIIFNM 276
I +S + +GASGAIFGL G+ F+ HR G + ++ ++ N+
Sbjct: 104 IGGFLVSMTLHPETVIIGASGAIFGLFGALGGFMFFHRERFGASYRAFVREFGAILAINL 163
Query: 277 AIGLLIKGIDNWGH 290
LL+ GID H
Sbjct: 164 IFDLLVPGIDLSAH 177
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 128 FIGRQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKG-QFWRLATSAFLH 181
F G TNIL+ VNV+V++ T + L+ +GA + I G ++ + S F+H
Sbjct: 12 FQGAFVTNILVIVNVIVFLLMSVTGGTTNINNLIRYGAMVPESIKNGSDYFSIFASMFIH 71
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGA 239
I HL++N +L +G +E I G ++L Y + + + +S F N + GASGA
Sbjct: 72 IGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSLYFANPQTISAGASGA 131
Query: 240 IFGLVGSFAVFIMRHRNI 257
IFG++G + + + R++
Sbjct: 132 IFGIIGVWLMLAITFRSV 149
>gi|297171861|gb|ADI22850.1| uncharacterized membrane protein (homolog of Drosophila rhomboid)
[uncultured nuHF2 cluster bacterium HF0500_31B05]
Length = 232
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 156 LLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++G L+ + G +W L T+ +LH + H+ N + +GP +E++ GP R ++
Sbjct: 51 LMFGMTGGGLVYQYGHWWTLITAIYLHGGLLHIFFNMMWVRQLGPLVEELFGPFRLFTIF 110
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ IA +S ++ +GASG+IFGL+ + V+ R + L ++ LQ + +F
Sbjct: 111 TVAGIAGFWLSATMGHNATLGASGSIFGLLATAIVYGRRSGSSL-FTRQFLQWAGILFVF 169
Query: 275 NMAIGLLIKGIDNWGH 290
GL+ GIDNW H
Sbjct: 170 ----GLVFPGIDNWAH 181
>gi|69250415|ref|ZP_00605147.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257878558|ref|ZP_05658211.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883193|ref|ZP_05662846.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257884310|ref|ZP_05663963.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257889244|ref|ZP_05668897.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894684|ref|ZP_05674337.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260560144|ref|ZP_05832322.1| predicted protein [Enterococcus faecium C68]
gi|261208172|ref|ZP_05922846.1| predicted protein [Enterococcus faecium TC 6]
gi|289566221|ref|ZP_06446654.1| predicted protein [Enterococcus faecium D344SRF]
gi|293553953|ref|ZP_06674557.1| integral membrane protein [Enterococcus faecium E1039]
gi|293559375|ref|ZP_06675916.1| integral membrane protein [Enterococcus faecium E1162]
gi|293567435|ref|ZP_06678782.1| integral membrane protein [Enterococcus faecium E1071]
gi|294618879|ref|ZP_06698391.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|294620730|ref|ZP_06699937.1| integral membrane protein [Enterococcus faecium U0317]
gi|383329069|ref|YP_005354953.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|406581363|ref|ZP_11056520.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|406583667|ref|ZP_11058722.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|406585946|ref|ZP_11060899.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|406591288|ref|ZP_11065573.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410937330|ref|ZP_11369191.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|415887925|ref|ZP_11549016.1| integral membrane protein [Enterococcus faecium E4453]
gi|416135289|ref|ZP_11598486.1| integral membrane protein [Enterococcus faecium E4452]
gi|427396310|ref|ZP_18889069.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430819831|ref|ZP_19438475.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430825622|ref|ZP_19443826.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430827756|ref|ZP_19445888.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430830843|ref|ZP_19448899.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430832956|ref|ZP_19450969.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430835660|ref|ZP_19453648.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430838244|ref|ZP_19456192.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430845905|ref|ZP_19463770.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430849513|ref|ZP_19467289.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430858002|ref|ZP_19475631.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430860336|ref|ZP_19477939.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430871476|ref|ZP_19483799.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430948341|ref|ZP_19485930.1| S54 family peptidase [Enterococcus faecium E1576]
gi|431005335|ref|ZP_19488981.1| S54 family peptidase [Enterococcus faecium E1578]
gi|431146274|ref|ZP_19499171.1| S54 family peptidase [Enterococcus faecium E1620]
gi|431229909|ref|ZP_19502112.1| S54 family peptidase [Enterococcus faecium E1622]
gi|431252249|ref|ZP_19504307.1| S54 family peptidase [Enterococcus faecium E1623]
gi|431292229|ref|ZP_19506777.1| S54 family peptidase [Enterococcus faecium E1626]
gi|431371343|ref|ZP_19509976.1| S54 family peptidase [Enterococcus faecium E1627]
gi|431497561|ref|ZP_19514715.1| S54 family peptidase [Enterococcus faecium E1634]
gi|431542045|ref|ZP_19518274.1| S54 family peptidase [Enterococcus faecium E1731]
gi|431651848|ref|ZP_19523777.1| S54 family peptidase [Enterococcus faecium E1904]
gi|431742997|ref|ZP_19531878.1| S54 family peptidase [Enterococcus faecium E2071]
gi|431746314|ref|ZP_19535148.1| S54 family peptidase [Enterococcus faecium E2134]
gi|431749981|ref|ZP_19538709.1| S54 family peptidase [Enterococcus faecium E2297]
gi|431754961|ref|ZP_19543621.1| S54 family peptidase [Enterococcus faecium E2883]
gi|431764245|ref|ZP_19552788.1| S54 family peptidase [Enterococcus faecium E4215]
gi|431767338|ref|ZP_19555792.1| S54 family peptidase [Enterococcus faecium E1321]
gi|431770954|ref|ZP_19559348.1| S54 family peptidase [Enterococcus faecium E1644]
gi|431772407|ref|ZP_19560748.1| S54 family peptidase [Enterococcus faecium E2369]
gi|431775648|ref|ZP_19563920.1| S54 family peptidase [Enterococcus faecium E2560]
gi|431778920|ref|ZP_19567125.1| S54 family peptidase [Enterococcus faecium E4389]
gi|431781758|ref|ZP_19569901.1| S54 family peptidase [Enterococcus faecium E6012]
gi|431785858|ref|ZP_19573880.1| S54 family peptidase [Enterococcus faecium E6045]
gi|447912440|ref|YP_007393852.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
gi|68193952|gb|EAN08519.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257812786|gb|EEV41544.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818851|gb|EEV46179.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257820148|gb|EEV47296.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257825604|gb|EEV52230.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257831063|gb|EEV57670.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260073979|gb|EEW62303.1| predicted protein [Enterococcus faecium C68]
gi|260077606|gb|EEW65323.1| predicted protein [Enterococcus faecium TC 6]
gi|289161999|gb|EFD09866.1| predicted protein [Enterococcus faecium D344SRF]
gi|291589832|gb|EFF21633.1| integral membrane protein [Enterococcus faecium E1071]
gi|291594879|gb|EFF26244.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|291599710|gb|EFF30720.1| integral membrane protein [Enterococcus faecium U0317]
gi|291601879|gb|EFF32127.1| integral membrane protein [Enterococcus faecium E1039]
gi|291606660|gb|EFF36053.1| integral membrane protein [Enterococcus faecium E1162]
gi|364092230|gb|EHM34621.1| integral membrane protein [Enterococcus faecium E4452]
gi|364095003|gb|EHM37105.1| integral membrane protein [Enterococcus faecium E4453]
gi|378938763|gb|AFC63835.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|404452763|gb|EJZ99915.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|404456327|gb|EKA03053.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|404461921|gb|EKA07771.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|404467899|gb|EKA12955.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410734441|gb|EKQ76361.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|425722980|gb|EKU85871.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430440034|gb|ELA50311.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430446087|gb|ELA55786.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430482432|gb|ELA59550.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430484358|gb|ELA61379.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430486411|gb|ELA63247.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430489197|gb|ELA65826.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430491988|gb|ELA68429.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430537559|gb|ELA77889.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430539725|gb|ELA79964.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430545954|gb|ELA85920.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430552264|gb|ELA91999.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430557796|gb|ELA97233.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430558114|gb|ELA97546.1| S54 family peptidase [Enterococcus faecium E1576]
gi|430561368|gb|ELB00636.1| S54 family peptidase [Enterococcus faecium E1578]
gi|430573895|gb|ELB12673.1| S54 family peptidase [Enterococcus faecium E1622]
gi|430575814|gb|ELB14511.1| S54 family peptidase [Enterococcus faecium E1620]
gi|430578675|gb|ELB17227.1| S54 family peptidase [Enterococcus faecium E1623]
gi|430582141|gb|ELB20569.1| S54 family peptidase [Enterococcus faecium E1626]
gi|430583415|gb|ELB21789.1| S54 family peptidase [Enterococcus faecium E1627]
gi|430588496|gb|ELB26688.1| S54 family peptidase [Enterococcus faecium E1634]
gi|430593092|gb|ELB31079.1| S54 family peptidase [Enterococcus faecium E1731]
gi|430600901|gb|ELB38527.1| S54 family peptidase [Enterococcus faecium E1904]
gi|430607361|gb|ELB44681.1| S54 family peptidase [Enterococcus faecium E2071]
gi|430609083|gb|ELB46289.1| S54 family peptidase [Enterococcus faecium E2134]
gi|430610628|gb|ELB47769.1| S54 family peptidase [Enterococcus faecium E2297]
gi|430618789|gb|ELB55630.1| S54 family peptidase [Enterococcus faecium E2883]
gi|430631142|gb|ELB67472.1| S54 family peptidase [Enterococcus faecium E1321]
gi|430631430|gb|ELB67752.1| S54 family peptidase [Enterococcus faecium E4215]
gi|430634404|gb|ELB70530.1| S54 family peptidase [Enterococcus faecium E1644]
gi|430638095|gb|ELB74076.1| S54 family peptidase [Enterococcus faecium E2369]
gi|430642917|gb|ELB78683.1| S54 family peptidase [Enterococcus faecium E2560]
gi|430643401|gb|ELB79145.1| S54 family peptidase [Enterococcus faecium E4389]
gi|430646729|gb|ELB82195.1| S54 family peptidase [Enterococcus faecium E6045]
gi|430648763|gb|ELB84160.1| S54 family peptidase [Enterococcus faecium E6012]
gi|445188149|gb|AGE29791.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
Length = 232
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ ++WRL T F+H + H ++N L +G +E I G R+ +Y S I +
Sbjct: 52 LVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTA 111
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAV--FIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S+ F N + GAS +IFGL G+ + F +H + ++ ++H I+ GL
Sbjct: 112 SFAFNEANVLSGGASTSIFGLFGALFILGFHFKHNPAI---QQLVRHFLLFIVLTFVFGL 168
Query: 281 LIKGIDNWGH 290
L +D WGH
Sbjct: 169 LDTSVDVWGH 178
>gi|95928805|ref|ZP_01311551.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
gi|95135150|gb|EAT16803.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
Length = 266
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+I G++WR T A+ HA + H+ N L +GP +E+ GP ++ +Y +A+A++ +
Sbjct: 92 VIQNGEWWRCITYAYTHAGLIHIGFNMMVLYQVGPMLEREIGPSGFISLYTITALAATGL 151
Query: 225 SYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIGLL 281
Y + + +GASGA+FG++G F + + + +GG + Q + + IF G L
Sbjct: 152 GYFWHPMTVVIGASGALFGMIG----FSITYFHRIGGHQALAQRDFMIRWAIFAFIFGFL 207
Query: 282 IKGIDNWGH 290
+ G DN H
Sbjct: 208 V-GADNAAH 215
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+L A NV++++ T D L + G LI +++RL T+ FLHA+I+HL+ N L
Sbjct: 23 VLTAANVIIFLVCQFTGDWLYIKGEFGAFYLIRSQEYYRLVTAMFLHADISHLVNNMILL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAV 249
G +EK G RYL ++F S I + ++ F S ++GASGA+FGL+G
Sbjct: 83 YFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAIFEVSTGMYFNSIGASGAVFGLIGGLLY 142
Query: 250 FIMRHR 255
++ +
Sbjct: 143 LVITRK 148
>gi|449466454|ref|XP_004150941.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis
sativus]
Length = 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + SL + Q WRL T +HA + HL++N S+ +G +E GP R +Y SA
Sbjct: 97 GLQRKSLTEYRQIWRLFTFPCMHAGLIHLVINLGSVIFVGIQLELEYGPVRTGIIYLLSA 156
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ ++ F NSP+VG+SGA+FGL+G+ I+R+ + L + V N
Sbjct: 157 YTGTLVAALFAQNSPSVGSSGALFGLLGAMISGIIRNWKLYTDRFLALGSVLAVFAINFG 216
Query: 278 IGLLIKGIDNWGH 290
+GLL IDN+ +
Sbjct: 217 LGLL-PYIDNFAN 228
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 291 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 348
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 349 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 408
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 409 ILTGLLWGLF-GGIDNASH 426
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T LL NV V+ QF LLL A + W++ TSAF+H + H+M N +
Sbjct: 9 TRNLLIANVAVFFLQFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVTHIMFNMLA 68
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASS----AMSYRFCNS---PAVGASGAIFGLVGS 246
L G T+E+ G R + YF AI +S A+ + F + P +GASGAIFGL+ +
Sbjct: 69 LYMFGGTIERTFGAREFTVYYFVCAIVASLLQLAVLWFFPPAQYGPTLGASGAIFGLLLA 128
Query: 247 FAVFIMRHRNIL 258
F + + +L
Sbjct: 129 FGMLYPHEKVML 140
>gi|413925083|gb|AFW65015.1| hypothetical protein ZEAMMB73_264327 [Zea mays]
Length = 322
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVHEHQGWRLISCIWLHAGLVHLVVNMLSLLFIGIRLEQQFGFVRIGVIYLISGFGGSVL 164
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S F N +VGASGA+FGL+GS ++ + I + L +I+ N+AIG+L
Sbjct: 165 SALFLHSNYVSVGASGALFGLLGSMLSELIINWTIYSNKAAAIITLLFIIVINLAIGILP 224
Query: 283 KGIDNWGH 290
DN+ H
Sbjct: 225 HA-DNFAH 231
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 187 FILTGLLWGLF-GGIDNAAH 205
>gi|256843575|ref|ZP_05549063.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256850051|ref|ZP_05555481.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047339|ref|ZP_06020296.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|293381863|ref|ZP_06627832.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|423319243|ref|ZP_17297119.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|423320787|ref|ZP_17298659.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
gi|256614995|gb|EEU20196.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713023|gb|EEU28014.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572313|gb|EEX28876.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|290921584|gb|EFD98617.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|405589376|gb|EKB62943.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|405599039|gb|EKB72221.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
Length = 228
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSL 194
+L+ V V++ + L+ GA N + G Q+WRL T+ FLH I HL+ N +
Sbjct: 22 LLIIFLVEVFLGGSENTNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGIMHLVSNAIII 81
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIM 252
+G ME + G R+L Y + + + MS F + GAS A+FGL G+ +
Sbjct: 82 YYMGQYMEPLMGHVRFLVTYLLAGVGGNLMSLAFSADRGLSAGASTALFGLFGAMTAIGL 141
Query: 253 R--HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
R H ++ + LA + N+A+ + + GID WGH
Sbjct: 142 RNLHNPMIAFLGRQAFVLALI---NLALDIFVPGIDIWGH 178
>gi|430822659|ref|ZP_19441236.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430865218|ref|ZP_19480976.1| S54 family peptidase [Enterococcus faecium E1574]
gi|430442969|gb|ELA52976.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430553296|gb|ELA92997.1| S54 family peptidase [Enterococcus faecium E1574]
Length = 232
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ ++WRL T F+H + H ++N L +G +E I G R+ +Y S I +
Sbjct: 52 LVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTA 111
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAV--FIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S+ F N + GAS +IFGL G+ + F +H + ++ ++H I+ GL
Sbjct: 112 SFAFNEANVLSGGASTSIFGLFGALFILGFHFKHNPAI---QQLVRHFLLFIVLTFVFGL 168
Query: 281 LIKGIDNWGH 290
L +D WGH
Sbjct: 169 LDTSVDVWGH 178
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 155 LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL +GA N+ L+ G++WRL T FLH I H + N +SL +GP +E + G R++ +
Sbjct: 61 LLRFGALENTALLIDGEWWRLVTPVFLHIGITHFLFNSFSLYLLGPQLEWLFGRWRFIAL 120
Query: 214 YFSSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
Y + I + A Y + GASGAI+GL+G + + R
Sbjct: 121 YLLTGIMGNLATVYLGEVGISAGASGAIYGLLGVYVYLFLFRRG 164
>gi|325571108|ref|ZP_08146680.1| S54 family peptidase [Enterococcus casseliflavus ATCC 12755]
gi|420263998|ref|ZP_14766633.1| S54 family peptidase [Enterococcus sp. C1]
gi|325156193|gb|EGC68379.1| S54 family peptidase [Enterococcus casseliflavus ATCC 12755]
gi|394768897|gb|EJF48774.1| S54 family peptidase [Enterococcus sp. C1]
Length = 222
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 133 WTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
+T + LA+ +V+I + + Q +++G + L ++WR T FLH +AH +
Sbjct: 14 FTYLFLAIQTIVFILGYFSPSIQSGGVMFGPFVVYL---NEYWRFVTPIFLHFGLAHFAI 70
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSF 247
N L +G +E I G R+ +Y S I + MS+ F + GAS ++FGL G+F
Sbjct: 71 NSVILYYMGQQVEAIYGHSRFFALYLLSGIMGNTMSFAFNQIGVQSAGASTSLFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ RN + ++ A + N+ G+ + ID W
Sbjct: 131 LILGWHFRNDY-RIQAMVRQFALFVGLNLVFGVFDQTIDMW 170
>gi|417139548|ref|ZP_11982970.1| peptidase, S54 family [Escherichia coli 97.0259]
gi|417307136|ref|ZP_12094013.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|338771313|gb|EGP26056.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|386157276|gb|EIH13618.1| peptidase, S54 family [Escherichia coli 97.0259]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|289434618|ref|YP_003464490.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170862|emb|CBH27404.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 509
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--LLLWGAKINSL 165
T+ N + + T FIG LL L Q T D L+ WG K N L
Sbjct: 168 TKVNEEQKVARNSKPTVTYTFIG------LLIAAFLWVTFQGGTTDSFNLIKWGGKFNPL 221
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR + FLH+ + HL N L +G E+I G RY + I + S
Sbjct: 222 IYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYTLILIIGGICGNIAS 281
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
+ + ++GAS A+F ++G+ ++ N+ K +A ++ N+ + + I
Sbjct: 282 FALNMNLSIGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAVNLLLDVFSSQI 339
Query: 286 DNWGH 290
D GH
Sbjct: 340 DIAGH 344
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 128 FIGRQWTNILLAVNVLVYIAQ------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFL 180
F G TN +L V V+ Y+ + F ++L GA+ N I G++WRL T FL
Sbjct: 27 FHGNWMTNAILFVTVVAYLVEVLLSGSFNINGQVLEQLGARWNPDIIAGEWWRLFTPIFL 86
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
H I H+ N +L G +E++ G ++L +Y S + + +S F N+ + GAS +
Sbjct: 87 HVTIYHIAFNMAALMYAGTIVEEVYGHFKFLLIYLFSGFSGNLISAFFKPNTISAGASTS 146
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGH 290
+FGL A+ ++ G K + L+K +I+ N+ L + +D GH
Sbjct: 147 LFGLFAVIALL-----QVVSGFKHQFTELSKGAVVLIVANLVFNLFMPSVDIAGH 196
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 137 LLAVNVLVYIAQ------FATQDKLLL-WGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
L+ V VLVY+ + F ++L GA+ + + + Q+WRL T+ FLH +HL
Sbjct: 18 LVTVMVLVYLWEVLQAHSFTINSQVLFHSGAQFSPAVYQLHQWWRLITAGFLHVTFSHLA 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
N +L IG +E GP R+L ++F + I+ + MS F N + GASG IFGL G+
Sbjct: 78 FNMITLYFIGRLLEIELGPWRFLALFFLTVISGNLMSLAFGGVNVISAGASGGIFGLFGA 137
>gi|357388451|ref|YP_004903290.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311894926|dbj|BAJ27334.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 310
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 111 NSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN--- 163
SG + TA R + T +L+A+NV Y+ + T D+ + G+ +
Sbjct: 58 KSGRQNVRQARTAFGGRITSRPYATIVLIALNVAAYVVELVRPETVDRFAVLGSGVLPPP 117
Query: 164 ------------SLIDKGQFWRLATSAFLH-------ANIAHLMVNCYSLNSIGPTMEKI 204
S I G++ RL T AFLH I H++ N Y L ++G +E
Sbjct: 118 ADYDPATYVPHLSGIAHGEWERLITGAFLHLGPTEWPMGILHIVFNMYWLWNLGRVVEDR 177
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRH-RNILGGGK 262
G R+L +Y SA+ SSA++Y N+ A+GASGA+FGL G + V R + LGG +
Sbjct: 178 LGVLRFLALYLLSALGSSALTYWIAPNTLALGASGAVFGLAGGYWVLSRRQGYDPLGGNQ 237
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 136 ILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 163 IILNVVIWLFMVLFLNRSSDLKLLDIGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 222
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 223 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 282
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ + L V++ + + L ++ I+ H
Sbjct: 283 YIGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAH 318
>gi|294614223|ref|ZP_06694142.1| integral membrane protein [Enterococcus faecium E1636]
gi|291592882|gb|EFF24472.1| integral membrane protein [Enterococcus faecium E1636]
Length = 232
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ ++WRL T F+H + H ++N L +G +E I G R+ +Y S I +
Sbjct: 52 LVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGNTA 111
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S+ F N + GAS +IFGL G+ + ++ L ++ ++H I+ GLL
Sbjct: 112 SFAFNEANVLSGGASTSIFGLFGALFILGFHFKHNL-AIQQLVRHFLLFIVLTFVFGLLD 170
Query: 283 KGIDNWGH 290
+D WGH
Sbjct: 171 TSVDVWGH 178
>gi|220918079|ref|YP_002493383.1| rhomboid family protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955933|gb|ACL66317.1| Rhomboid family protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 360
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 147 AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
A +T D LL GA ++ + G+ WRL T+AFLH HL+ N + +E+
Sbjct: 38 AHGSTTDPALLARMGALDHARVWDGEPWRLLTAAFLHVGPVHLVWNLAFGVPLCALVERA 97
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
G RR+L VY +SA+ SA S + GASGA+FG+ G+ +R +G +
Sbjct: 98 IGTRRFLAVYVASALGGSAASMLAAMPMSAGASGALFGVAGAMLAL---YRRAVGSWRAF 154
Query: 265 LQH----LAKVIIFNMAIGLLIKGIDNWGH 290
L L +++ A+ L ID W H
Sbjct: 155 LASRDIILNGILLVGFALAGLFLPIDGWAH 184
>gi|300931592|ref|ZP_07146904.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
gi|300460616|gb|EFK24109.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
Length = 283
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|323450009|gb|EGB05893.1| hypothetical protein AURANDRAFT_9027 [Aureococcus anophagefferens]
Length = 77
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q +LL G K LI GQ+WRLAT LHA+ AHL+VN SL ++G ++E+ G ++ L
Sbjct: 4 QPQLLTLGCKSAPLIGAGQWWRLATPMLLHASPAHLIVNMISLRNVGRSLERAYGAKKTL 63
Query: 212 GVYFSSAIASSAMS 225
VY +S IA + +S
Sbjct: 64 VVYVASGIAGNLLS 77
>gi|300814558|ref|ZP_07094812.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511326|gb|EFK38572.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 237
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPIFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAV 249
Y L +G E + G RYL +Y + + + +SY F N + + GAS +++GL G
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIG 143
Query: 250 FIMRHRN 256
++R+++
Sbjct: 144 LMIRYKD 150
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
GQ+WRL T+ FLH I HL+ N + +G +E + G R+L VY S I + +S+
Sbjct: 53 GQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPLLGHIRFLAVYLISGIGGNLLSFAL 112
Query: 229 CN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLI 282
+ S + GAS A+FGL G+ +R+ + G + ++++ + + N+ + L I
Sbjct: 113 GDDRSISAGASTALFGLFGALIAVGVRNATSVEGSNSLISYISRQAFVLALINIGLDLFI 172
Query: 283 KGIDNWGH 290
ID GH
Sbjct: 173 PNIDLQGH 180
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 7/159 (4%)
Query: 136 ILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F ++ KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 167 IILNVVIWLFMVLFLNRSSDLKLLDVGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 226
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 227 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 286
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ ++ + L V++ + + L ++ I+ H
Sbjct: 287 YIGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAH 322
>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa]
gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ Q WRL T +LHA + H++ N SL IG +E+ G R +Y S S
Sbjct: 102 NKVVHGHQGWRLITCMWLHAGVVHVLANMLSLIFIGIRLEQQFGFVRVGIIYLVSGFGGS 161
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L
Sbjct: 162 ILSSLFIQQNISVGASGALFGLLGAMLSELLTNWTIYSNKIAALLTLVVIIAINLAVGIL 221
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 222 -PHVDNFAH 229
>gi|257867689|ref|ZP_05647342.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874016|ref|ZP_05653669.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257876595|ref|ZP_05656248.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801772|gb|EEV30675.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808180|gb|EEV37002.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257810761|gb|EEV39581.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 222
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 133 WTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
+T + LA+ +V+I + + Q +++G + L ++WR T FLH +AH +
Sbjct: 14 FTYLFLAIQTIVFILGYFSPSIQSGGVMFGPFVVYL---NEYWRFVTPIFLHFGLAHFAI 70
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSF 247
N L +G +E I G R+ +Y S I + MS+ F + GAS ++FGL G+F
Sbjct: 71 NSVILYYMGQQVEAIYGHSRFFALYLLSGIMGNTMSFAFNQIGVQSAGASTSLFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ RN + ++ A + N+ G+ + ID W
Sbjct: 131 LILGWHFRNDY-RIQAMVRQFALFVGLNLVFGVFDQTIDMW 170
>gi|421876784|ref|ZP_16308338.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
gi|372557462|emb|CCF24458.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
Length = 229
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 159 GAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK I Q +WRL T FLHA I H++ N +L +GP E+ G R+L +Y
Sbjct: 47 GAKWGPDIAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFG 106
Query: 218 AIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVII 273
I + SY + +VGAS A+F + ++ +R+R+ I G L ++
Sbjct: 107 GIVGNIFSYLLSPLAISVGASSALFAMFAGLILYGVRYRDNPTIRAQGATFLLF----VV 162
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ GLL ID WGH
Sbjct: 163 LNLFSGLLAPTIDLWGH 179
>gi|449522305|ref|XP_004168167.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis
sativus]
Length = 380
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + SL + Q WRL T +HA + HL++N S+ +G +E GP R +Y SA
Sbjct: 124 GLQRKSLTEYRQIWRLFTFPCMHAGLIHLVINLGSVIFVGIQLELEYGPVRTGIIYLLSA 183
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ ++ F NSP+VG+SGA+FGL+G+ I+R+ + L + V N
Sbjct: 184 YTGTLVAALFAQNSPSVGSSGALFGLLGAMISGIIRNWKLYTDRFLALGSVLAVFAINFG 243
Query: 278 IGLLIKGIDNWGH 290
+GLL IDN+ +
Sbjct: 244 LGLL-PYIDNFAN 255
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 82 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 139
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 140 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 199
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
I+ + GL GIDN H
Sbjct: 200 FILTGLLWGLF-GGIDNAAH 218
>gi|432977333|ref|ZP_20166158.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|433086282|ref|ZP_20272679.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
gi|431482437|gb|ELH62140.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|431609318|gb|ELI78643.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
Length = 348
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|153815443|ref|ZP_01968111.1| hypothetical protein RUMTOR_01678 [Ruminococcus torques ATCC 27756]
gi|145847302|gb|EDK24220.1| peptidase, S54 family [Ruminococcus torques ATCC 27756]
Length = 175
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 151 TQDK--LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
T+D +L GA I +GQ ++R+ T FLH I HLM N L ++G +E G
Sbjct: 5 TEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHLMNNMVMLGALGWNLELEIGK 64
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAVFIMRHRNILGGGK 262
R++ +YF S I + +S S + GASGA+FGL+G+ ++ +R L G+
Sbjct: 65 LRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGAVFGLMGALLYVVIANRGRL--GQ 122
Query: 263 EELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + +++ ++ GL G+DN H
Sbjct: 123 LSGRGMIFMVVLSLYFGLTSSGVDNMAH 150
>gi|42519493|ref|NP_965423.1| hypothetical protein LJ1618 [Lactobacillus johnsonii NCC 533]
gi|385826288|ref|YP_005862630.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837977|ref|ZP_12484215.1| GlpG protein [Lactobacillus johnsonii pf01]
gi|41583781|gb|AAS09389.1| hypothetical protein LJ_1618 [Lactobacillus johnsonii NCC 533]
gi|329667732|gb|AEB93680.1| hypothetical protein LJP_1358c [Lactobacillus johnsonii DPC 6026]
gi|338761520|gb|EGP12789.1| GlpG protein [Lactobacillus johnsonii pf01]
Length = 228
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSA 178
TN F TN +L V +V+I + + L+ GA N L+ + Q+WRL T+
Sbjct: 6 TNRFSSTFVTNAILIVLFVVFIIETIMGGSTNINTLVRLGAMNNQLVTVEHQWWRLFTAQ 65
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GA 236
FLH H+ N + +G ME + G R+L VY S I + +SY + + V GA
Sbjct: 66 FLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYGSDSVVSAGA 125
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRR 296
S A+FGL G + +R I Q LA II N+A+ L ID GH G
Sbjct: 126 STALFGLFGVVIALYLANRAIPAINYLGRQALALAII-NLALDLFASHIDILGH--LGGL 182
Query: 297 VPLQLLGI 304
+ LLGI
Sbjct: 183 ISGFLLGI 190
>gi|218549768|ref|YP_002383559.1| hypothetical protein EFER_2447 [Escherichia fergusonii ATCC 35469]
gi|218357309|emb|CAQ89944.1| conserved hypothetical protein; putative membrane protein
[Escherichia fergusonii ATCC 35469]
Length = 645
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 43 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 102
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 103 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 162
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 19/168 (11%)
Query: 137 LLAVNVLVYIAQFA---TQDKLLLW---GAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
L+A N++VYI + T + L G +ID +++RL TS FLHA + HL N
Sbjct: 153 LIAANIIVYIIVASGGNTYNGFYLATKGGLVAKYVIDYKEYYRLFTSMFLHAGVQHLASN 212
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA---MSYRFCNSPA--VGASGAIFGLVG 245
L +G T+E+I G RY +Y + + +S + YR + A +GASGAIF ++G
Sbjct: 213 MIMLLFVGDTIERIVGHVRYAIIYLAGGLFASVGTLLYYRTYDMYACCIGASGAIFAVMG 272
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF-NMAI--GLLIKGIDNWGH 290
+ ++ +R G+ E + ++I+F AI GL +G N H
Sbjct: 273 ALIYILICNR-----GRTEGFSIVRIILFVAYAIYSGLTTQGTCNAAH 315
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N I KG++WRL TS F+H + H + N L +G ++EK G R++ ++F++ I
Sbjct: 36 AAYNEYISKGEYWRLITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGI 95
Query: 220 ASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHR 255
+ + SY + GASG IFGL+G+ +F++ R
Sbjct: 96 SGNIASYIIMPIEYIHAGASGGIFGLLGA-QLFLLYSR 132
>gi|378550610|ref|ZP_09825826.1| hypothetical protein CCH26_11002 [Citricoccus sp. CH26A]
Length = 215
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 137 LLAVNVLVYIAQFATQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
++ + +VY+ QF T + W A + + + WR+ TSAFLH+ N H+++
Sbjct: 1 MIGICAVVYLLQFLTSGQRTGVTEQFWYAGMFTSAVAMEPWRMLTSAFLHSPGNPLHILL 60
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N ++L +G +E + G R+L +Y SA S N P VGASGA++GL
Sbjct: 61 NLFTLWMMGRVLEPVLGWARFLALYLISAFGGSVAVLWLSAPNVPVVGASGAVYGLFA-- 118
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+FI+ R GG + L V N+AI + I GH
Sbjct: 119 ALFIVLRRT--GGNVSSIVALIGV---NLAISFMGANISWQGH 156
>gi|374710297|ref|ZP_09714731.1| hypothetical protein SinuC_08740 [Sporolactobacillus inulinus CASD]
Length = 204
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 134 TNILLAVNVLVYIA-----------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T ILL +NVL+Y+ +FA G+ +++++ G +W+L T FLH
Sbjct: 18 TAILLGINVLLYLLFVLTGTWRLAPEFAFTIFNFAAGSN-DAILNGGAWWQLVTPIFLHI 76
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNSPAVGASGAI 240
+H++ N +SL GP +E++ G RYL + S+ + + +A+ GASGA+
Sbjct: 77 TFSHILFNAFSLYIFGPALEQLIGRFRYLIAFLSTGVIANIAALFLEPIGFVHYGASGAL 136
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
FGL+G + ++ R + +++ + +++ ++ ID GH
Sbjct: 137 FGLLGIYIYLVVFRREFI--SRQDQTIIFVIVLVSLISSFFSANIDIIGH 184
>gi|51860142|gb|AAU11321.1| rhomboid 2 [Toxoplasma gondii]
gi|221481683|gb|EEE20059.1| rhomboid 2 protease [Toxoplasma gondii GT1]
Length = 284
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPA-VGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQQMKAGASTAVFALIG 187
>gi|145337690|ref|NP_177909.2| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197915|gb|AEE36036.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 351
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G +L + + WR+ TS +LH+ + HL +N SL +G ME+ GP R +YF S
Sbjct: 110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I S + F N P++ + A FGL+G+ + ++ N+ L + + N
Sbjct: 170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229
Query: 278 IGLLIKGIDNWGH 290
IG L IDN+ +
Sbjct: 230 IGFL-PFIDNFAN 241
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 110 KNSGHEGTSHLD---TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL-------LWG 159
+GH T+ L T + R T ILL +N+ V++A + LL +W
Sbjct: 59 SGTGHAPTASLPRTIAGGTVVADPRLVTKILLGINLAVFVA-VQIRPSLLRDLYLIGVWP 117
Query: 160 AKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+ G+++RL TS F H I H+ N L +G +E+ G RYL +Y
Sbjct: 118 PAPFLPTEGVADGEWYRLFTSMFTHEAIWHIAFNMLGLWWLGGPLEQALGRARYLALYLI 177
Query: 217 SAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMR 253
S +A SA++Y + + +GASGAIFGL G+ AV + R
Sbjct: 178 SGLAGSALTYLLASGTTATLGASGAIFGLFGAMAVLMRR 216
>gi|170017498|ref|YP_001728417.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|414597489|ref|ZP_11447055.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
gi|169804355|gb|ACA82973.1| Small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|390481770|emb|CCF29116.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
Length = 229
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 159 GAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK I Q +WRL T FLHA I H++ N +L +GP E+ G R+L +Y
Sbjct: 47 GAKWGPDIAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFG 106
Query: 218 AIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVII 273
I + SY + +VGAS A+F + ++ +R+R+ I G L ++
Sbjct: 107 GIVGNIFSYLLSPLAISVGASSALFAMFAGLILYGVRYRDNPTIRAQGATFLLF----VV 162
Query: 274 FNMAIGLLIKGIDNWGH 290
N+ GLL ID WGH
Sbjct: 163 LNLFSGLLAPTIDLWGH 179
>gi|432859392|ref|ZP_20085463.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
gi|431408031|gb|ELG91228.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLL--WGAKI---NSLIDKGQFWRLATSAFLHAN 183
T IL+ +NV V+IA A D +L+ W + +G+++RL T+ F H
Sbjct: 87 TKILIGINVAVFIAVQALPSSFLSDMVLIGRWPPAPFVPTEGVAEGEWYRLVTTMFTHEE 146
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
I H+ N SL +G +E G RYL +Y S +A S ++Y + + +GASGAIF
Sbjct: 147 IWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVLAYLLASPTTATLGASGAIF 206
Query: 242 GLVGSFAVFIMR 253
GL G+ A + R
Sbjct: 207 GLFGATAALVRR 218
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T KL+ GA + + G++ RL TS FLH N H++ N SL G +E I G R
Sbjct: 182 TDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRM 241
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
GVY S I + ++ F ++ ++GASGAIFGL+GS
Sbjct: 242 FGVYMLSGIIGNLVTLAFSPDTFSLGASGAIFGLIGS 278
>gi|334135017|ref|ZP_08508518.1| peptidase, S54 family [Paenibacillus sp. HGF7]
gi|333607519|gb|EGL18832.1| peptidase, S54 family [Paenibacillus sp. HGF7]
Length = 204
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 84/164 (51%), Gaps = 9/164 (5%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ ++V++++ + L+ +GA ++ ++WR T+ FLH ++HL+
Sbjct: 19 TSLLVLIHVVLFVLMEVSGSSTSTRTLIEYGALFSAPGFVPEWWRFFTAMFLHIGLSHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAIFGLVGS 246
N ++L P +E++ G RY Y +S SA SY A GASGAI+G+ +
Sbjct: 79 FNSFALVIFAPPLERLLGSVRYAVFYLASGALGSAFSYWLHTDAYVAAGASGAIYGIYAA 138
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + R +L ++ Q + +++ + +++ +D + H
Sbjct: 139 YLYLALFRRQLL--DQQSRQTVIIILVSGLLFSVIVPNVDLYTH 180
>gi|432529994|ref|ZP_19767037.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
gi|431057070|gb|ELD66548.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSEQIVISVGASGAIMGIAGA 142
>gi|398307565|ref|ZP_10511151.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
vallismortis DV1-F-3]
Length = 199
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 Y--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y + VGASGAIFGL G + ++ + ++ G+E + + ++ F + + L+
Sbjct: 113 YVAEPLDYVHVGASGAIFGLFGVYLYMVVFRKELI--GREHSKMILTLLAFAVLMSLINS 170
Query: 284 GIDNWGH 290
I+ H
Sbjct: 171 NINIMAH 177
>gi|397671735|ref|YP_006513270.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
gi|395143082|gb|AFN47189.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
Length = 272
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + G +W++ T+AF H ++ H+ N +L +GP +E + G R+L +Y SA
Sbjct: 95 GATWTEGVASGAWWQVLTNAFTHLDVIHIAFNMVALYVLGPQLESVLGRARFLALYLVSA 154
Query: 219 IASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRH 254
+ SA F + +GASGAIFG++G+ + +H
Sbjct: 155 LTGSAAVVWFSAPYTTTMGASGAIFGMMGAVLLIAWKH 192
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+LL G N + G++WRL T FLH++ H++ N +SL GP +E++ G ++
Sbjct: 39 QQLLYLGIGSNYDVYNGEYWRLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFII 98
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y S + ++ +Y N +G+S AIFGL G + ++ ++++ + Q +
Sbjct: 99 TYLLSGVLANIGTYFVAPINYYHLGSSSAIFGLFGVYLYMVIYRKDLI--DRMNSQIIIS 156
Query: 271 VIIFNMAIGLLIKGIDNWGH 290
+++ M + I+ + H
Sbjct: 157 ILVIGMVMTFFRSDINIYAH 176
>gi|330818784|ref|XP_003291518.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
gi|325078290|gb|EGC31949.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
Length = 202
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-Y 226
+G++WR + FLH I H ++N + +G +E+ G R + +Y + + S
Sbjct: 3 QGEWWRFFSPIFLHVGIFHYLMNMATQLRVGMQLERAYGGHRIVPIYLLCGVMGNLCSAI 62
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
S VGASGAIFG +G ++R+ +L LA II + A+GL + G+D
Sbjct: 63 MLPQSVQVGASGAIFGFLGVLLADLIRNWGVLARPYLNCGTLAFTIITSFAVGLFLPGVD 122
Query: 287 NWGH 290
N+ H
Sbjct: 123 NYAH 126
>gi|224104429|ref|XP_002313433.1| predicted protein [Populus trichocarpa]
gi|222849841|gb|EEE87388.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+N ++ K Q WRL + +LHA + H++ N SL IG +E+ G R VY S
Sbjct: 68 DVNRVVHKHQSWRLISCIWLHAGVFHVLANMLSLLFIGIRLEQEFGFLRVGLVYVISGFG 127
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F + +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 128 GSLLSALFIQTGISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLLCIIAVNLAVG 187
Query: 280 LLIKGIDNWGH 290
LL +DN+ H
Sbjct: 188 LL-PHVDNFAH 197
>gi|331672189|ref|ZP_08372981.1| outer membrane protein [Escherichia coli TA280]
gi|331070656|gb|EGI42019.1| outer membrane protein [Escherichia coli TA280]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|300920527|ref|ZP_07136953.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|432532817|ref|ZP_19769815.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
gi|300412466|gb|EFJ95776.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|431063700|gb|ELD72933.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSEQIVISVGASGAIMGIAGA 142
>gi|224053955|ref|XP_002298056.1| predicted protein [Populus trichocarpa]
gi|222845314|gb|EEE82861.1| predicted protein [Populus trichocarpa]
Length = 322
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ Q WRL T +LHA + H++ N SL IG +E+ G R +Y S S
Sbjct: 102 NKIVRGDQGWRLITCMWLHAGVIHVLANMLSLVFIGIRLEQQFGFVRVGLIYLVSGFGGS 161
Query: 223 AMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
S F + +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L
Sbjct: 162 IFSSLFIQRNISVGASGALFGLLGAMLSELLTNWTIYSNKIAALLTLMVIIAINLAVGIL 221
Query: 282 IKGIDNWGH 290
+DN+ H
Sbjct: 222 -PHVDNFAH 229
>gi|424817145|ref|ZP_18242296.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
gi|325498165|gb|EGC96024.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|432769512|ref|ZP_20003867.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|432960155|ref|ZP_20150361.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|433061907|ref|ZP_20248866.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
gi|431318193|gb|ELG05960.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|431478264|gb|ELH58013.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|431587577|gb|ELI58950.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
Length = 460
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|239986984|ref|ZP_04707648.1| hypothetical protein SrosN1_06732 [Streptomyces roseosporus NRRL
11379]
gi|291443931|ref|ZP_06583321.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
gi|291346878|gb|EFE73782.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
Length = 303
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 32/153 (20%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVY+ + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYLGEVVRPEIVDRFAVLGAVLTGPDGEQYYYRGDTFQGYELTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNI 257
Y ++ VGASGA+FGL ++ V HR +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRRL 221
>gi|332148745|dbj|BAK20219.1| Rhomboid family KOMPEITO [Arabidopsis thaliana]
Length = 385
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G +L + + WR+ TS +LH+ + HL +N SL +G ME+ GP R +YF S
Sbjct: 110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I S + F N P++ + A FGL+G+ + ++ N+ L + + N
Sbjct: 170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229
Query: 278 IGLLIKGIDNWGH 290
IG L IDN+ +
Sbjct: 230 IGFL-PFIDNFAN 241
>gi|18977600|ref|NP_578957.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|397651726|ref|YP_006492307.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
gi|18893319|gb|AAL81352.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|393189317|gb|AFN04015.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
Length = 193
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
NLF T+IL + V+ ++ + DK ++ A+IN + G+FWR+ T+ F+H
Sbjct: 3 NLFRYFPGTSILAFMIVVGFVYEIVVGFDKAIMQFAQINLYVYLGEFWRVITAIFIHMGY 62
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIF 241
H +N + L +G +E + G R+++ V+FS A+ + +S F P V GASG +F
Sbjct: 63 IHFALNLFWLIYLGMDLEGLLGSRKFIIVFFSGAVIGNILS-LFVLPPFVASGGASGGLF 121
Query: 242 GLVGS 246
+VG+
Sbjct: 122 AIVGA 126
>gi|422330928|ref|ZP_16411945.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
gi|373248177|gb|EHP67609.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
Length = 467
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|115477653|ref|NP_001062422.1| Os08g0546700 [Oryza sativa Japonica Group]
gi|42408095|dbj|BAD09236.1| putative membrane protein [Oryza sativa Japonica Group]
gi|113624391|dbj|BAF24336.1| Os08g0546700 [Oryza sativa Japonica Group]
gi|215686417|dbj|BAG87702.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201559|gb|EEC83986.1| hypothetical protein OsI_30137 [Oryza sativa Indica Group]
gi|222640971|gb|EEE69103.1| hypothetical protein OsJ_28172 [Oryza sativa Japonica Group]
Length = 323
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 105 KVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSV 164
Query: 224 MSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+L
Sbjct: 165 LSVLFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGIL 224
Query: 282 IKGIDNWGH 290
DN+ H
Sbjct: 225 PHA-DNFAH 232
>gi|383806768|ref|ZP_09962329.1| hypothetical protein IMCC13023_02910 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299198|gb|EIC91812.1| hypothetical protein IMCC13023_02910 [Candidatus Aquiluna sp.
IMCC13023]
Length = 199
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 138 LAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLH--ANIAHLMVNCYSLN 195
+A+NV++++ Q + L L + WR+ T+ F+H H+++N Y++
Sbjct: 1 MALNVVIWLGQISPVGYLFTNQMFFAPLFAPFEPWRMLTAGFVHDWTGPFHILLNSYAIW 60
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMR 253
G +E + GP R+L +Y ++ + S + P VGASGA+FGL+G++ FI+
Sbjct: 61 IFGRILEPLLGPVRFLVMYLTAIVGGSVAVMWLSDPQVPVVGASGALFGLMGAY--FIVV 118
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GG ++ L + N +G + GI GH
Sbjct: 119 RST--GGNSTQIFTLIAI---NFGLGFFVSGISWEGH 150
>gi|373108079|ref|ZP_09522370.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
gi|371650245|gb|EHO15713.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
Length = 206
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHL 187
TN ++ +NVLV++ + D LL +GA I + ++WRL T+AFLH I HL
Sbjct: 13 TNWMILINVLVFLYTALRGGMSDNDILLRYGASYTPYIFENHEYWRLLTAAFLHFGIRHL 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFG 242
N L G ++E G +YL Y SA+ +SA S + + GASGA+F
Sbjct: 73 GNNMLVLFVTGDSLEHALGHVKYLIFYLFSAVGASAASLAVEVAMGQKVLSAGASGAVFA 132
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN---MAIGLLIKGIDNWGH 290
++G ++R+ G+ E + ++ F+ + G +G+DN H
Sbjct: 133 VLGGLIWVLIRNS-----GRFEEFRIRNLLFFSGMMLLSGFFTEGVDNAAH 178
>gi|300823026|ref|ZP_07103160.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|417224822|ref|ZP_12028113.1| peptidase, S54 family [Escherichia coli 96.154]
gi|417268148|ref|ZP_12055509.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|423708594|ref|ZP_17682972.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|432375777|ref|ZP_19618789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|432833688|ref|ZP_20067234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
gi|300524375|gb|EFK45444.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|385707931|gb|EIG44956.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|386199870|gb|EIH98861.1| peptidase, S54 family [Escherichia coli 96.154]
gi|386230506|gb|EII57861.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|430901150|gb|ELC23133.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|431388187|gb|ELG71925.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa]
gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+ ++D Q+WRL T +LH + HL+ N SL IG +E+ G + +Y S
Sbjct: 97 DVQKVVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFG 156
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+GS ++ + I L +I N+A+G
Sbjct: 157 GSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYANQVAAFITLVVIIAVNLALG 216
Query: 280 LLIKGIDNWGH 290
+L +DN+ H
Sbjct: 217 IL-PHVDNFAH 226
>gi|209917918|ref|YP_002292002.1| hypothetical protein ECSE_0727 [Escherichia coli SE11]
gi|422355992|ref|ZP_16436695.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
gi|209911177|dbj|BAG76251.1| conserved hypothetical protein [Escherichia coli SE11]
gi|324016063|gb|EGB85282.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVG- 245
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ A + + + L ++ + G GIDN H
Sbjct: 143 ALATQLASGAGTYHKNQRRVFSLLGMVALTLLYGARQAGIDNACH 187
>gi|383809416|ref|ZP_09964936.1| peptidase, S54 family [Rothia aeria F0474]
gi|383447768|gb|EID50745.1| peptidase, S54 family [Rothia aeria F0474]
Length = 257
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q+ + + + K + + +++R TS FLH+ + +HL++
Sbjct: 76 TYTLIGINVVVYLLQWIIPNYWVYNEFAYKADWVAYSHEYYRAITSGFLHSQNDPSHLLL 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFA 248
N SL G +EK+ G RYL VY ++ + SA + ++ VGASG IFGL+G++
Sbjct: 136 NMVSLYLFGAAIEKMIGNWRYLLVYLTAILGGSAAVWVLEPHAVVVGASGGIFGLMGAYL 195
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + ++ ++ + +I N+ G ++ GI H
Sbjct: 196 TIMVALKE-----RDNVRSVMVLIGVNVIYGFIMPGISWQAH 232
>gi|300817823|ref|ZP_07098037.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|415876304|ref|ZP_11542772.1| outer membrane protein [Escherichia coli MS 79-10]
gi|432804745|ref|ZP_20038690.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|432933001|ref|ZP_20132855.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|433192613|ref|ZP_20376630.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
gi|300529520|gb|EFK50582.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|342928791|gb|EGU97513.1| outer membrane protein [Escherichia coli MS 79-10]
gi|431357208|gb|ELG43881.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|431457034|gb|ELH37377.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|431720867|gb|ELJ84886.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVG- 245
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ A + + + L ++ + G GIDN H
Sbjct: 143 ALATQLASGAGTYHKNQRRVFSLLGMVALTLLYGARQAGIDNACH 187
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,754,662,001
Number of Sequences: 23463169
Number of extensions: 191201188
Number of successful extensions: 635238
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3016
Number of HSP's successfully gapped in prelim test: 2482
Number of HSP's that attempted gapping in prelim test: 627792
Number of HSP's gapped (non-prelim): 5887
length of query: 305
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 163
effective length of database: 9,027,425,369
effective search space: 1471470335147
effective search space used: 1471470335147
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)