Query 021954
Match_columns 305
No_of_seqs 227 out of 1518
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 1.4E-28 4.7E-33 215.1 19.5 169 129-300 2-174 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 3E-29 1E-33 222.0 13.8 169 128-300 6-179 (196)
3 2hfr_A Fowlicidin-3, cathelici 10.7 71 0.0024 18.4 0.5 20 23-42 7-26 (27)
4 2b9s_B DNA topoisomerase I-lik 9.3 62 0.0021 22.8 -0.2 17 67-83 22-38 (62)
5 3vr8_C Cytochrome B-large subu 8.6 5.7E+02 0.02 21.5 5.6 20 172-191 122-143 (188)
6 1col_A Colicin A; antibacteria 6.8 4.2E+02 0.014 22.9 3.9 6 233-238 171-176 (204)
7 3arc_J Photosystem II reaction 6.6 1.8E+02 0.0061 18.6 1.1 16 19-34 4-19 (40)
8 2cxa_A Leucyl/phenylalanyl-tRN 6.1 89 0.003 28.1 -0.8 64 13-80 69-132 (256)
9 2jy0_A Protease NS2-3; membran 4.6 3E+02 0.01 16.1 1.1 17 288-304 6-22 (27)
10 3hr5_R M1prime-derived peptide 4.0 3.3E+02 0.011 16.3 1.0 10 5-14 24-33 (35)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=1.4e-28 Score=215.09 Aligned_cols=169 Identities=21% Similarity=0.196 Sum_probs=129.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcch
Q 021954 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (305)
Q Consensus 129 ~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~ 207 (305)
+.+|+|..++++|+++|+++...+. ...++....+..+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4578999999999999999887544 334444444545678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhc---cCC
Q 021954 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL---IKG 284 (305)
Q Consensus 208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll---~~~ 284 (305)
+|++.+|+.+++.+++.++++.+..++|+||+++|++++..+...++++.....+.+ ....+.+.+++++. .++
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~ 158 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRG---LIIFALIWIVAGWFDLFGMS 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHH---HHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceeeeHHH---HHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988776799999999999998776433333221111111 22222333444443 368
Q ss_pred hhhHhcchhhHHHHHh
Q 021954 285 IDNWGHDMPGRRVPLQ 300 (305)
Q Consensus 285 i~~~aHLGGa~~~~~~ 300 (305)
+|++||+||++.|...
T Consensus 159 v~~~aHlgG~l~G~l~ 174 (181)
T 2xov_A 159 MANGAHIAGLAVGLAM 174 (181)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999996655543
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.96 E-value=3e-29 Score=221.97 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=129.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcc
Q 021954 128 FIGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206 (305)
Q Consensus 128 ~~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G 206 (305)
.+++|+|..++++|+++|+++...++ ...++....++.+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G 85 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG 85 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34578999999999999999987643 33444444454567899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhc----c
Q 021954 207 PRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----I 282 (305)
Q Consensus 207 ~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll----~ 282 (305)
+++++.+|+.+++.+++.++++.+..++||||++||++++.++....++..+.. +.... .++.+.+++++. .
T Consensus 86 ~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~ 161 (196)
T 2nr9_A 86 SVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDL-PEGFF---TMLLVGIALGFISPLFG 161 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCC-CCSST---TTTTTTTTHHHHSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhcc-hHHHH---HHHHHHHHHHHHHhccC
Confidence 999999999999999999999877679999999999999876654333332111 11111 111112223333 3
Q ss_pred CChhhHhcchhhHHHHHh
Q 021954 283 KGIDNWGHDMPGRRVPLQ 300 (305)
Q Consensus 283 ~~i~~~aHLGGa~~~~~~ 300 (305)
+++|++||+||++.|...
T Consensus 162 ~~v~~~aHlgG~l~G~l~ 179 (196)
T 2nr9_A 162 VEMGNAAHISGLIVGLIW 179 (196)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 489999999996666543
No 3
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=10.70 E-value=71 Score=18.37 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.0
Q ss_pred CcchhhhhhhhcchhhhhHh
Q 021954 23 PPLNLITTTAKHSLSVSLSR 42 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (305)
.|..+.+++|+..+-.+.||
T Consensus 7 vpvaintvaaginlykairr 26 (27)
T 2hfr_A 7 VPVAINTVAAGINLYKAIRR 26 (27)
T ss_dssp SSSHHHHHHHHHTSTTTTTC
T ss_pred CcceEEEeehhhhHHHHHhc
Confidence 46778888999988888776
No 4
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=9.28 E-value=62 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=14.2
Q ss_pred cCCCcchhhhhhccccc
Q 021954 67 CHIPRLKDQWCENAFRF 83 (305)
Q Consensus 67 ~~~~~~~~~w~~~~~~~ 83 (305)
|-.|||+-+||.++..-
T Consensus 22 YlDPRItvaWcKr~~VP 38 (62)
T 2b9s_B 22 YIDPRIICSWAKAQDVP 38 (62)
T ss_dssp TSCHHHHHHHHHHTTCC
T ss_pred ccCchhhhhhhhhcCCC
Confidence 56899999999988753
No 5
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=8.60 E-value=5.7e+02 Score=21.54 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.8
Q ss_pred chhhhhcccc--CCHHHHHHHH
Q 021954 172 WRLATSAFLH--ANIAHLMVNC 191 (305)
Q Consensus 172 wRL~Ts~FlH--~~~~HLl~Nm 191 (305)
|-+..+.+.| .++-|+++.+
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3445556677 5899998875
No 6
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=6.79 E-value=4.2e+02 Score=22.86 Aligned_cols=6 Identities=67% Similarity=1.071 Sum_probs=2.9
Q ss_pred eechHH
Q 021954 233 AVGASG 238 (305)
Q Consensus 233 ~vGaSG 238 (305)
.+|.-|
T Consensus 171 ~~Gi~g 176 (204)
T 1col_A 171 AVGIAG 176 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445544
No 7
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=6.61 E-value=1.8e+02 Score=18.60 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=12.9
Q ss_pred ccCCCcchhhhhhhhc
Q 021954 19 WLTRPPLNLITTTAKH 34 (305)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (305)
..++-|+-+|+|+++.
T Consensus 4 ~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 4 EGGRIPLWIVATVAGM 19 (40)
T ss_dssp CTTSSCHHHHHHHHHH
T ss_pred CcCcccEEeeeeehhh
Confidence 3578889999998886
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=6.12 E-value=89 Score=28.06 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCCCccccCCCcchhhhhhhhcchhhhhHhhhhccCccchhhhhcccccccccccCCCcchhhhhhcc
Q 021954 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENA 80 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 80 (305)
+.+|+.|..|.|=-++-. ..+|.+|++||.+.... ...-+-..|.++-+-|..||-...|+...
T Consensus 69 ~~~pilWwsP~pR~Vl~p-~~~hisrSLrk~lr~~~---f~vt~n~aF~~VI~~Ca~~R~~gTWI~~e 132 (256)
T 2cxa_A 69 PGDPILWWSPDPRAVLWP-ESLHISRSMKRFHKRSP---YRVTMNYAFGQVIEGCASDREEGTWITRG 132 (256)
T ss_dssp TTSCCEEECCSSEEEECG-GGCCCCHHHHHHHHTCC---CEEEESSCHHHHHHHHHTC---CTTCCHH
T ss_pred CCCccceECCCCCEEecc-ccccCCHHHHHHHCCCC---eEEEEcCcHHHHHHHhcCCCCCCCCCCHH
Confidence 347888888888777765 68999999999753211 11223344555544444455455786543
No 9
>2jy0_A Protease NS2-3; membrane segment, HCV NS2 protein, membrane protein, viral protein; NMR {Synthetic}
Probab=4.63 E-value=3e+02 Score=16.09 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=10.4
Q ss_pred HhcchhhHHHHHhHhcC
Q 021954 288 WGHDMPGRRVPLQLLGI 304 (305)
Q Consensus 288 ~aHLGGa~~~~~~a~Gl 304 (305)
.|-+||++++.+..+.|
T Consensus 6 aas~G~~vlv~lti~TL 22 (27)
T 2jy0_A 6 AASAGGAVFVGLVLLTL 22 (27)
T ss_dssp HHTTSSHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHhc
Confidence 45667766666665544
No 10
>3hr5_R M1prime-derived peptide; FAB-peptide complex, immune system; 2.40A {Mus musculus}
Probab=4.03 E-value=3.3e+02 Score=16.30 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=7.3
Q ss_pred cCCCCCCCCC
Q 021954 5 ASGRALPHHR 14 (305)
Q Consensus 5 ~~~~~~~~~~ 14 (305)
|.|-++|+|+
T Consensus 24 aaggsvphpr 33 (35)
T 3hr5_R 24 AAGGSVPHPR 33 (35)
T ss_pred ccCCCCCCCC
Confidence 5677888875
Done!