BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021955
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119


>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
           Ppl2, A Novel Chimerolectin From Parkia Platycephala
           Seeds Exhibiting Endochitinolytic Activity
          Length = 271

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 215 GMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKASM 260
           G + PQ L   +LPF+ RSP+    ++ +R     T     IK S+
Sbjct: 226 GYVPPQQLINQVLPFVKRSPKYGGVMLWDRFNDLKTKYSSKIKPSV 271


>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
 pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
 pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
           Radiodurans.
 pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
           Radiodurans.
 pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
           Insight Into Its Role In Dna Repair
          Length = 244

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 203 DPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTP 252
           DP+ GQ +CS C  + P P    +L F+  + R+      E+   S+  P
Sbjct: 165 DPLGGQLLCSKCAALPPYP--PAVLDFLRHAVRRTVRASFEQPVPSADRP 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,885,424
Number of Sequences: 62578
Number of extensions: 349998
Number of successful extensions: 784
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 7
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)