Query 021955
Match_columns 305
No_of_seqs 270 out of 559
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 1.6E-34 3.4E-39 271.7 13.2 237 5-303 3-272 (356)
2 smart00594 UAS UAS domain. 100.0 7.6E-29 1.6E-33 205.1 12.3 115 112-226 2-121 (122)
3 cd02958 UAS UAS family; UAS is 100.0 5E-28 1.1E-32 197.1 13.4 113 120-232 1-113 (114)
4 cd02991 UAS_ETEA UAS family, E 99.9 3.8E-27 8.3E-32 194.1 13.7 114 120-233 1-116 (116)
5 cd02990 UAS_FAF1 UAS family, F 99.9 2.8E-23 6.1E-28 175.3 13.3 114 120-233 1-136 (136)
6 PF13899 Thioredoxin_7: Thiore 99.7 6.1E-16 1.3E-20 118.9 9.2 80 122-204 3-82 (82)
7 KOG1363 Predicted regulator of 99.6 6.1E-16 1.3E-20 153.5 2.4 196 105-302 147-379 (460)
8 cd02951 SoxW SoxW family; SoxW 99.5 2.1E-13 4.5E-18 112.1 12.5 108 125-232 2-121 (125)
9 cd02955 SSP411 TRX domain, SSP 99.5 1.9E-13 4.1E-18 114.0 11.7 89 126-215 5-99 (124)
10 cd02960 AGR Anterior Gradient 99.5 3.6E-14 7.8E-19 119.2 7.3 93 120-216 7-99 (130)
11 PF14555 UBA_4: UBA-like domai 99.4 5.8E-13 1.2E-17 91.1 4.9 41 9-50 1-41 (43)
12 cd02953 DsbDgamma DsbD gamma f 99.4 3.6E-12 7.9E-17 101.3 9.6 100 127-226 2-103 (104)
13 PF03190 Thioredox_DsbH: Prote 99.3 1E-11 2.2E-16 108.0 9.4 88 124-212 25-118 (163)
14 PF13098 Thioredoxin_2: Thiore 99.2 1.5E-11 3.4E-16 98.4 3.0 94 132-226 1-112 (112)
15 PRK00293 dipZ thiol:disulfide 99.1 3E-10 6.5E-15 116.5 11.0 106 122-229 460-569 (571)
16 cd02959 ERp19 Endoplasmic reti 99.1 1.4E-10 3E-15 95.4 6.9 103 124-231 7-114 (117)
17 COG2143 Thioredoxin-related pr 99.1 1.3E-09 2.8E-14 93.7 10.2 110 121-231 27-150 (182)
18 cd02950 TxlA TRX-like protein 99.0 4.5E-09 9.8E-14 89.2 11.6 102 130-235 14-115 (142)
19 KOG2507 Ubiquitin regulatory p 98.9 9.1E-09 2E-13 100.1 10.7 109 120-230 3-111 (506)
20 cd02985 TRX_CDSP32 TRX family, 98.8 7E-08 1.5E-12 77.1 10.7 93 124-227 5-100 (103)
21 KOG0910 Thioredoxin-like prote 98.8 4.2E-08 9E-13 84.0 9.8 105 120-231 45-149 (150)
22 cd02956 ybbN ybbN protein fami 98.7 1.1E-07 2.3E-12 74.1 10.1 93 125-226 3-95 (96)
23 cd02997 PDI_a_PDIR PDIa family 98.7 2.4E-07 5.2E-12 72.5 9.9 88 132-224 13-102 (104)
24 PF00085 Thioredoxin: Thioredo 98.6 3.7E-07 8E-12 70.9 10.1 97 122-228 6-102 (103)
25 cd02949 TRX_NTR TRX domain, no 98.6 8.5E-07 1.8E-11 69.7 11.1 96 123-226 1-96 (97)
26 PRK10996 thioredoxin 2; Provis 98.6 8.6E-07 1.9E-11 74.8 11.7 91 132-229 48-138 (139)
27 cd02963 TRX_DnaJ TRX domain, D 98.6 6.6E-07 1.4E-11 72.4 10.4 100 120-226 6-108 (111)
28 cd02993 PDI_a_APS_reductase PD 98.6 4.5E-07 9.8E-12 72.9 9.1 96 123-224 9-107 (109)
29 KOG0907 Thioredoxin [Posttrans 98.6 5.3E-07 1.1E-11 73.3 9.5 86 122-217 7-94 (106)
30 TIGR00385 dsbE periplasmic pro 98.5 6.6E-07 1.4E-11 77.9 10.0 92 133-231 60-172 (173)
31 COG1331 Highly conserved prote 98.5 5.5E-07 1.2E-11 92.7 10.1 84 126-210 33-122 (667)
32 PHA02278 thioredoxin-like prot 98.5 1.7E-06 3.6E-11 69.8 10.7 83 134-224 12-99 (103)
33 cd02986 DLP Dim1 family, Dim1- 98.5 1.2E-06 2.6E-11 72.1 9.8 95 123-229 3-110 (114)
34 cd02984 TRX_PICOT TRX domain, 98.5 1.4E-06 2.9E-11 67.7 9.4 92 124-225 4-95 (97)
35 cd03002 PDI_a_MPD1_like PDI fa 98.5 1.4E-06 2.9E-11 69.1 9.4 97 122-224 7-106 (109)
36 cd02948 TRX_NDPK TRX domain, T 98.5 2.8E-06 6E-11 67.6 11.2 87 132-227 13-100 (102)
37 COG4232 Thiol:disulfide interc 98.4 4.8E-07 1E-11 91.8 8.1 100 128-229 464-567 (569)
38 PLN00410 U5 snRNP protein, DIM 98.4 2E-06 4.2E-11 73.5 10.5 100 122-233 11-123 (142)
39 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.4E-06 3.1E-11 71.4 9.0 97 120-224 14-111 (113)
40 cd02961 PDI_a_family Protein D 98.4 2.1E-06 4.5E-11 65.6 9.0 91 128-224 7-99 (101)
41 cd03000 PDI_a_TMX3 PDIa family 98.4 2.5E-06 5.5E-11 67.7 9.3 95 124-227 4-101 (104)
42 cd02999 PDI_a_ERp44_like PDIa 98.4 1.5E-06 3.2E-11 69.3 7.9 83 132-224 14-98 (100)
43 cd02947 TRX_family TRX family; 98.4 3.8E-06 8.3E-11 62.7 9.8 85 132-226 6-92 (93)
44 cd02996 PDI_a_ERp44 PDIa famil 98.4 3.2E-06 6.9E-11 67.5 9.8 92 122-224 8-106 (108)
45 PRK09381 trxA thioredoxin; Pro 98.4 5.7E-06 1.2E-10 65.9 11.2 97 124-230 12-108 (109)
46 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 3.3E-06 7.2E-11 66.6 9.3 90 123-224 9-102 (104)
47 PTZ00051 thioredoxin; Provisio 98.3 6E-06 1.3E-10 64.2 10.0 84 127-221 9-94 (98)
48 cd02954 DIM1 Dim1 family; Dim1 98.3 9.4E-06 2E-10 66.9 11.4 84 135-228 13-109 (114)
49 TIGR01068 thioredoxin thioredo 98.3 1.1E-05 2.4E-10 62.2 11.1 89 133-228 11-99 (101)
50 TIGR01126 pdi_dom protein disu 98.3 5.9E-06 1.3E-10 64.1 9.4 94 124-228 5-100 (102)
51 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 5.9E-06 1.3E-10 65.0 9.0 90 123-223 9-98 (101)
52 cd02994 PDI_a_TMX PDIa family, 98.3 8.7E-06 1.9E-10 63.9 9.8 91 122-226 8-99 (101)
53 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 2.9E-06 6.2E-11 68.7 6.8 93 130-226 14-122 (123)
54 cd02998 PDI_a_ERp38 PDIa famil 98.2 6E-06 1.3E-10 64.4 8.3 88 132-224 14-103 (105)
55 PRK15412 thiol:disulfide inter 98.2 1.2E-05 2.6E-10 70.8 10.7 91 135-232 67-178 (185)
56 TIGR02740 TraF-like TraF-like 98.2 2E-05 4.3E-10 74.0 12.3 94 132-231 162-265 (271)
57 cd02995 PDI_a_PDI_a'_C PDIa fa 98.2 1E-05 2.2E-10 63.1 8.5 84 133-224 15-102 (104)
58 cd02987 Phd_like_Phd Phosducin 98.2 2.4E-05 5.1E-10 68.9 11.6 98 123-232 71-173 (175)
59 cd03005 PDI_a_ERp46 PDIa famil 98.2 2.1E-05 4.5E-10 61.3 10.0 89 123-223 8-99 (102)
60 cd02957 Phd_like Phosducin (Ph 98.2 1.2E-05 2.5E-10 65.2 8.5 82 123-216 12-95 (113)
61 PRK03147 thiol-disulfide oxido 98.1 2.1E-05 4.6E-10 67.4 10.3 91 135-228 60-170 (173)
62 TIGR02738 TrbB type-F conjugat 98.1 1.3E-05 2.9E-10 69.1 8.8 91 133-229 47-152 (153)
63 cd03001 PDI_a_P5 PDIa family, 98.1 4.8E-05 1.1E-09 59.3 10.1 86 133-224 15-100 (103)
64 cd02989 Phd_like_TxnDC9 Phosdu 98.0 4.4E-05 9.5E-10 62.2 9.9 77 130-216 16-94 (113)
65 TIGR01295 PedC_BrcD bacterioci 98.0 0.00011 2.3E-09 61.0 11.3 94 124-230 12-120 (122)
66 cd03065 PDI_b_Calsequestrin_N 98.0 8E-05 1.7E-09 61.8 10.5 98 123-230 17-119 (120)
67 cd02975 PfPDO_like_N Pyrococcu 98.0 9.1E-05 2E-09 60.3 10.7 91 131-231 17-111 (113)
68 cd03010 TlpA_like_DsbE TlpA-li 98.0 2.9E-05 6.4E-10 63.4 7.7 83 132-221 21-125 (127)
69 PTZ00443 Thioredoxin domain-co 98.0 8.1E-05 1.8E-09 68.2 11.3 103 121-230 36-139 (224)
70 cd02966 TlpA_like_family TlpA- 98.0 4E-05 8.6E-10 59.4 7.8 79 130-215 13-116 (116)
71 cd03009 TryX_like_TryX_NRX Try 97.9 5E-05 1.1E-09 62.4 8.5 73 133-212 15-115 (131)
72 cd02982 PDI_b'_family Protein 97.8 9.2E-05 2E-09 57.9 7.5 84 136-227 12-100 (103)
73 cd02952 TRP14_like Human TRX-r 97.8 0.00014 3.1E-09 60.2 8.7 68 135-210 20-103 (119)
74 cd02962 TMX2 TMX2 family; comp 97.8 0.00019 4E-09 62.0 9.6 81 123-215 36-126 (152)
75 cd02992 PDI_a_QSOX PDIa family 97.8 0.00021 4.6E-09 58.2 9.5 77 123-205 9-88 (114)
76 TIGR01130 ER_PDI_fam protein d 97.8 0.00013 2.9E-09 71.5 9.7 98 123-231 9-110 (462)
77 TIGR00424 APS_reduc 5'-adenyly 97.7 0.00019 4.1E-09 72.3 10.4 114 108-226 343-459 (463)
78 PTZ00102 disulphide isomerase; 97.7 0.00015 3.2E-09 72.0 9.5 97 123-231 40-139 (477)
79 PRK14018 trifunctional thiored 97.7 0.00018 3.9E-09 73.3 9.9 90 135-227 55-170 (521)
80 cd02965 HyaE HyaE family; HyaE 97.7 0.00084 1.8E-08 55.1 11.5 102 106-223 3-109 (111)
81 PRK13728 conjugal transfer pro 97.6 0.00053 1.1E-08 60.9 9.9 86 140-232 73-173 (181)
82 PTZ00102 disulphide isomerase; 97.6 0.00034 7.4E-09 69.5 9.5 103 121-232 363-467 (477)
83 cd03008 TryX_like_RdCVF Trypar 97.6 0.00018 4E-09 61.7 6.6 79 133-212 22-128 (146)
84 cd02988 Phd_like_VIAF Phosduci 97.6 0.0011 2.3E-08 59.4 11.7 80 123-216 90-171 (192)
85 cd02964 TryX_like_family Trypa 97.6 0.00033 7.1E-09 58.0 7.7 78 128-212 9-115 (132)
86 PLN02309 5'-adenylylsulfate re 97.5 0.0006 1.3E-08 68.6 10.4 112 110-227 339-454 (457)
87 PRK13703 conjugal pilus assemb 97.5 0.00093 2E-08 62.1 10.6 93 136-234 143-245 (248)
88 TIGR02739 TraF type-F conjugat 97.5 0.0014 3E-08 61.3 11.7 92 136-233 150-251 (256)
89 PLN02919 haloacid dehalogenase 97.5 0.00057 1.2E-08 75.2 10.7 93 135-234 419-540 (1057)
90 smart00804 TAP_C C-terminal do 97.5 0.00023 5E-09 52.7 5.3 46 3-49 7-52 (63)
91 TIGR02187 GlrX_arch Glutaredox 97.4 0.001 2.2E-08 59.9 9.7 90 135-232 19-113 (215)
92 PTZ00062 glutaredoxin; Provisi 97.4 0.0017 3.6E-08 58.8 10.8 83 130-231 11-95 (204)
93 cd02969 PRX_like1 Peroxiredoxi 97.4 0.0017 3.6E-08 56.0 10.1 99 135-236 24-158 (171)
94 PTZ00056 glutathione peroxidas 97.3 0.0019 4.1E-08 57.8 10.5 92 134-232 37-180 (199)
95 PF13728 TraF: F plasmid trans 97.3 0.0022 4.8E-08 58.3 10.4 87 134-226 118-214 (215)
96 PF13905 Thioredoxin_8: Thiore 97.3 0.0013 2.8E-08 50.8 7.4 69 136-208 1-94 (95)
97 TIGR02661 MauD methylamine deh 97.2 0.003 6.5E-08 55.9 10.2 88 134-232 72-180 (189)
98 cd03017 PRX_BCP Peroxiredoxin 97.2 0.0027 5.9E-08 52.2 9.3 88 135-225 22-138 (140)
99 PHA02125 thioredoxin-like prot 97.2 0.0019 4.2E-08 48.5 7.6 71 140-226 2-73 (75)
100 PLN02399 phospholipid hydroper 97.2 0.004 8.8E-08 57.5 10.8 36 195-231 200-235 (236)
101 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.0041 8.8E-08 51.4 9.4 92 122-226 8-112 (116)
102 cd03012 TlpA_like_DipZ_like Tl 97.1 0.0026 5.7E-08 52.0 7.9 81 132-215 19-124 (126)
103 KOG0908 Thioredoxin-like prote 97.1 0.0032 6.9E-08 58.5 9.1 92 130-232 15-108 (288)
104 TIGR00411 redox_disulf_1 small 97.1 0.0041 9E-08 46.4 8.3 75 141-229 4-81 (82)
105 PF03943 TAP_C: TAP C-terminal 97.0 0.00045 9.7E-09 49.0 2.4 41 9-50 1-41 (51)
106 COG3118 Thioredoxin domain-con 97.0 0.0044 9.5E-08 58.8 9.6 98 123-231 31-131 (304)
107 PLN02412 probable glutathione 97.0 0.003 6.4E-08 54.8 7.9 95 135-232 28-166 (167)
108 cd00340 GSH_Peroxidase Glutath 97.0 0.0066 1.4E-07 51.5 9.5 26 198-224 125-150 (152)
109 cd02967 mauD Methylamine utili 96.9 0.005 1.1E-07 48.9 8.1 72 135-210 20-109 (114)
110 TIGR01130 ER_PDI_fam protein d 96.9 0.0038 8.2E-08 61.2 8.8 98 121-234 352-454 (462)
111 cd03015 PRX_Typ2cys Peroxiredo 96.7 0.008 1.7E-07 52.0 8.3 92 134-228 27-155 (173)
112 TIGR00412 redox_disulf_2 small 96.7 0.0088 1.9E-07 45.1 7.4 69 141-226 3-75 (76)
113 PRK09437 bcp thioredoxin-depen 96.7 0.021 4.5E-07 48.1 10.4 93 135-231 29-153 (154)
114 TIGR02540 gpx7 putative glutat 96.7 0.02 4.3E-07 48.5 10.3 97 131-229 17-152 (153)
115 TIGR03137 AhpC peroxiredoxin. 96.7 0.0089 1.9E-07 52.8 8.3 97 134-233 29-161 (187)
116 PF00627 UBA: UBA/TS-N domain; 96.6 0.0046 1E-07 40.5 4.5 35 8-44 2-36 (37)
117 cd00194 UBA Ubiquitin Associat 96.5 0.0063 1.4E-07 39.7 4.9 36 9-46 2-37 (38)
118 PRK15000 peroxidase; Provision 96.5 0.017 3.7E-07 51.7 8.9 91 135-228 33-160 (200)
119 smart00165 UBA Ubiquitin assoc 96.5 0.0064 1.4E-07 39.5 4.6 36 9-46 2-37 (37)
120 PRK10382 alkyl hydroperoxide r 96.5 0.035 7.6E-07 49.4 10.8 110 115-228 9-154 (187)
121 PF08534 Redoxin: Redoxin; In 96.4 0.018 4E-07 47.8 7.9 78 134-218 26-136 (146)
122 KOG2501 Thioredoxin, nucleored 96.4 0.023 4.9E-07 49.4 8.6 82 127-212 24-131 (157)
123 KOG2244 Highly conserved prote 96.3 0.0062 1.4E-07 61.9 5.5 80 126-205 102-187 (786)
124 PF00578 AhpC-TSA: AhpC/TSA fa 96.2 0.016 3.6E-07 46.3 6.7 74 135-211 24-123 (124)
125 TIGR02187 GlrX_arch Glutaredox 96.2 0.036 7.7E-07 49.9 9.3 82 133-227 129-213 (215)
126 PRK00522 tpx lipid hydroperoxi 96.0 0.044 9.6E-07 47.4 8.7 75 135-214 43-148 (167)
127 KOG1364 Predicted ubiquitin re 95.9 0.0011 2.3E-08 63.9 -1.9 84 131-214 6-97 (356)
128 PTZ00253 tryparedoxin peroxida 95.9 0.051 1.1E-06 48.3 8.9 90 135-227 35-161 (199)
129 PRK11509 hydrogenase-1 operon 95.8 0.069 1.5E-06 45.2 8.9 58 171-232 69-126 (132)
130 PTZ00137 2-Cys peroxiredoxin; 95.7 0.083 1.8E-06 49.6 9.7 92 135-229 97-224 (261)
131 PRK13190 putative peroxiredoxi 95.4 0.17 3.7E-06 45.3 10.4 94 134-230 25-154 (202)
132 KOG0191 Thioredoxin/protein di 95.3 0.084 1.8E-06 51.6 8.9 95 131-232 42-136 (383)
133 cd03026 AhpF_NTD_C TRX-GRX-lik 95.3 0.18 3.9E-06 39.3 9.1 81 130-224 5-88 (89)
134 PTZ00256 glutathione peroxidas 95.2 0.2 4.3E-06 44.0 10.1 38 193-231 142-182 (183)
135 TIGR01626 ytfJ_HI0045 conserve 95.2 0.24 5.1E-06 44.2 10.5 89 133-230 56-179 (184)
136 KOG0190 Protein disulfide isom 95.0 0.065 1.4E-06 54.4 7.0 95 122-227 32-129 (493)
137 cd02971 PRX_family Peroxiredox 94.9 0.18 4E-06 41.1 8.5 80 135-217 21-130 (140)
138 KOG0912 Thiol-disulfide isomer 94.3 0.079 1.7E-06 50.7 5.5 92 136-230 13-106 (375)
139 cd02968 SCO SCO (an acronym fo 94.3 0.16 3.4E-06 41.7 6.6 22 135-156 21-43 (142)
140 PRK13189 peroxiredoxin; Provis 94.2 0.23 5E-06 45.3 8.2 92 135-229 34-162 (222)
141 PRK13191 putative peroxiredoxi 94.2 0.29 6.2E-06 44.4 8.8 91 135-228 32-159 (215)
142 cd03014 PRX_Atyp2cys Peroxired 94.2 0.26 5.7E-06 40.7 7.9 75 135-216 25-129 (143)
143 cd03016 PRX_1cys Peroxiredoxin 93.9 0.36 7.8E-06 43.1 8.8 88 137-227 26-151 (203)
144 PRK13599 putative peroxiredoxi 93.9 0.28 6E-06 44.6 8.0 91 135-228 27-154 (215)
145 cd02973 TRX_GRX_like Thioredox 93.7 0.24 5.2E-06 35.6 6.0 54 140-201 3-58 (67)
146 PF13848 Thioredoxin_6: Thiore 93.7 0.36 7.8E-06 41.1 8.1 84 135-223 93-179 (184)
147 cd01659 TRX_superfamily Thiore 93.5 0.12 2.7E-06 34.2 4.0 62 140-205 1-63 (69)
148 cd03018 PRX_AhpE_like Peroxire 93.5 0.47 1E-05 39.2 8.2 82 132-216 23-133 (149)
149 cd02970 PRX_like2 Peroxiredoxi 93.4 0.65 1.4E-05 38.1 8.9 64 136-204 24-88 (149)
150 PF02845 CUE: CUE domain; Int 92.9 0.27 6E-06 32.9 4.7 40 9-48 2-41 (42)
151 smart00546 CUE Domain that may 92.4 0.39 8.4E-06 32.3 5.1 40 9-48 3-42 (43)
152 PF13192 Thioredoxin_3: Thiore 92.1 0.66 1.4E-05 34.7 6.5 69 144-226 6-75 (76)
153 KOG2086 Protein tyrosine phosp 91.1 0.079 1.7E-06 51.9 0.6 42 7-49 3-44 (380)
154 PRK10606 btuE putative glutath 90.3 2.8 6E-05 37.2 9.8 74 131-209 20-103 (183)
155 PF02114 Phosducin: Phosducin; 90.2 1.4 3.1E-05 41.4 8.2 101 125-235 136-239 (265)
156 KOG4351 Uncharacterized conser 89.9 0.051 1.1E-06 49.8 -1.7 46 5-50 20-67 (244)
157 TIGR00264 alpha-NAC-related pr 89.7 0.51 1.1E-05 39.1 4.1 34 9-43 79-112 (116)
158 PRK06369 nac nascent polypepti 88.9 0.61 1.3E-05 38.6 4.1 36 8-44 76-111 (115)
159 PF14595 Thioredoxin_9: Thiore 88.6 0.83 1.8E-05 38.2 4.8 78 131-216 36-117 (129)
160 KOG0191 Thioredoxin/protein di 88.6 2.2 4.7E-05 41.7 8.5 97 130-233 156-255 (383)
161 PF06110 DUF953: Eukaryotic pr 88.5 1.7 3.7E-05 36.1 6.5 73 125-203 8-97 (119)
162 COG0526 TrxA Thiol-disulfide i 88.3 2.2 4.7E-05 31.6 6.7 61 136-203 32-97 (127)
163 cd02983 P5_C P5 family, C-term 88.3 2.5 5.3E-05 35.3 7.5 94 136-233 20-118 (130)
164 PRK11657 dsbG disulfide isomer 88.2 1.7 3.6E-05 40.4 7.0 92 128-227 109-249 (251)
165 COG1225 Bcp Peroxiredoxin [Pos 87.9 5.1 0.00011 34.9 9.4 97 130-229 24-155 (157)
166 TIGR02196 GlrX_YruB Glutaredox 87.5 3.7 8.1E-05 28.9 7.2 66 141-224 3-71 (74)
167 PRK10877 protein disulfide iso 87.1 2.2 4.7E-05 39.1 7.0 86 131-228 102-229 (232)
168 TIGR03143 AhpF_homolog putativ 83.0 6.1 0.00013 40.6 8.8 83 130-226 469-554 (555)
169 KOG4277 Uncharacterized conser 82.9 2.5 5.3E-05 40.8 5.4 99 121-226 29-128 (468)
170 KOG0190 Protein disulfide isom 82.2 3.8 8.2E-05 41.9 6.8 103 120-236 371-475 (493)
171 COG1308 EGD2 Transcription fac 80.3 2.8 6.1E-05 35.0 4.2 34 10-44 86-119 (122)
172 cd03013 PRX5_like Peroxiredoxi 79.7 5.2 0.00011 34.1 6.0 67 135-204 28-98 (155)
173 TIGR02200 GlrX_actino Glutared 79.5 12 0.00025 26.9 7.1 70 141-227 3-76 (77)
174 PF00462 Glutaredoxin: Glutare 78.6 6.6 0.00014 27.5 5.3 50 142-201 3-55 (60)
175 PF03413 PepSY: Peptidase prop 76.5 9.4 0.0002 26.6 5.6 58 123-213 2-64 (64)
176 TIGR02180 GRX_euk Glutaredoxin 74.8 9.8 0.00021 27.9 5.6 57 141-203 2-61 (84)
177 cd03072 PDI_b'_ERp44 PDIb' fam 74.2 9.1 0.0002 30.9 5.6 59 171-231 49-109 (111)
178 CHL00098 tsf elongation factor 74.1 4.5 9.7E-05 36.6 4.1 39 10-49 3-41 (200)
179 TIGR00116 tsf translation elon 73.1 4.6 0.0001 38.6 4.1 40 9-49 5-44 (290)
180 PRK09377 tsf elongation factor 72.8 4.7 0.0001 38.5 4.1 41 8-49 5-45 (290)
181 PRK12332 tsf elongation factor 71.8 5.5 0.00012 35.9 4.1 40 9-49 5-44 (198)
182 cd03419 GRX_GRXh_1_2_like Glut 69.6 18 0.00039 26.4 6.0 55 141-203 3-60 (82)
183 PF11547 E3_UbLigase_EDD: E3 u 69.6 17 0.00036 25.6 5.1 45 5-49 6-50 (53)
184 KOG1731 FAD-dependent sulfhydr 68.5 4.8 0.0001 41.8 3.3 101 122-231 46-154 (606)
185 COG0264 Tsf Translation elonga 68.4 8.3 0.00018 36.9 4.7 40 9-49 6-45 (296)
186 KOG2756 Predicted Mg2+-depende 65.2 4.2 9.1E-05 38.7 2.0 39 11-49 27-65 (349)
187 cd02976 NrdH NrdH-redoxin (Nrd 64.7 26 0.00056 24.4 5.8 52 140-201 2-56 (73)
188 PRK15317 alkyl hydroperoxide r 64.3 35 0.00075 34.7 8.7 91 126-228 105-196 (517)
189 KOG1071 Mitochondrial translat 64.0 9.2 0.0002 37.0 4.1 40 6-46 44-83 (340)
190 cd03028 GRX_PICOT_like Glutare 63.7 26 0.00056 26.9 6.0 55 137-203 8-70 (90)
191 PF03765 CRAL_TRIO_N: CRAL/TRI 62.2 13 0.00029 25.8 3.8 27 20-46 27-53 (55)
192 KOG3077 Uncharacterized conser 62.1 4.3 9.3E-05 38.1 1.5 42 4-46 4-46 (260)
193 PF02966 DIM1: Mitosis protein 61.4 93 0.002 26.5 9.2 92 133-231 17-118 (133)
194 cd04598 CBS_pair_GGDEF_assoc T 58.9 36 0.00077 26.1 6.1 97 121-224 8-118 (119)
195 KOG3414 Component of the U4/U6 58.1 1.2E+02 0.0025 25.9 9.9 92 133-231 20-121 (142)
196 TIGR03140 AhpF alkyl hydropero 56.8 59 0.0013 33.0 8.8 92 126-229 106-198 (515)
197 TIGR02183 GRXA Glutaredoxin, G 55.7 42 0.00091 25.4 5.9 50 143-203 5-64 (86)
198 COG0386 BtuE Glutathione perox 55.3 1.1E+02 0.0024 26.7 8.9 82 149-231 63-161 (162)
199 cd04599 CBS_pair_GGDEF_assoc2 55.0 51 0.0011 24.5 6.3 97 116-223 3-103 (105)
200 PF05768 DUF836: Glutaredoxin- 54.8 23 0.00051 26.6 4.2 79 140-227 2-81 (81)
201 PF06972 DUF1296: Protein of u 53.4 46 0.001 24.4 5.3 43 7-49 4-46 (60)
202 COG3531 Predicted protein-disu 51.4 36 0.00079 30.9 5.5 47 183-231 162-210 (212)
203 TIGR00365 monothiol glutaredox 50.9 89 0.0019 24.4 7.2 57 136-203 11-74 (97)
204 PF11009 DUF2847: Protein of u 50.8 1.3E+02 0.0029 24.3 8.3 88 125-222 10-104 (105)
205 cd03418 GRX_GRXb_1_3_like Glut 50.7 54 0.0012 23.4 5.6 50 143-203 5-58 (75)
206 PF00571 CBS: CBS domain CBS d 49.7 28 0.00061 23.5 3.7 56 164-227 1-56 (57)
207 cd03020 DsbA_DsbC_DsbG DsbA fa 48.0 35 0.00075 29.9 4.9 37 183-225 160-196 (197)
208 TIGR02181 GRX_bact Glutaredoxi 47.2 50 0.0011 24.1 5.0 48 145-203 6-56 (79)
209 PRK11200 grxA glutaredoxin 1; 47.1 71 0.0015 23.8 5.9 69 140-228 3-81 (85)
210 cd02066 GRX_family Glutaredoxi 46.7 86 0.0019 21.4 6.0 48 144-201 6-56 (72)
211 cd03027 GRX_DEP Glutaredoxin ( 46.4 74 0.0016 22.9 5.7 49 144-203 7-58 (73)
212 cd03073 PDI_b'_ERp72_ERp57 PDI 46.2 65 0.0014 26.0 5.8 61 163-227 42-108 (111)
213 PF00681 Plectin: Plectin repe 46.1 27 0.00059 23.6 3.0 23 200-222 12-38 (45)
214 COG2103 Predicted sugar phosph 45.9 33 0.00071 32.7 4.5 39 9-48 234-272 (298)
215 PRK10329 glutaredoxin-like pro 45.5 1.3E+02 0.0028 22.7 7.7 66 144-227 7-74 (81)
216 PRK05441 murQ N-acetylmuramic 44.5 28 0.0006 33.2 3.9 37 11-48 238-274 (299)
217 cd04606 CBS_pair_Mg_transporte 44.0 95 0.0021 23.4 6.3 95 122-225 5-108 (109)
218 TIGR02189 GlrX-like_plant Glut 43.6 40 0.00087 26.5 4.1 53 139-203 10-68 (99)
219 PF02630 SCO1-SenC: SCO1/SenC; 43.3 98 0.0021 26.7 6.9 18 197-215 156-173 (174)
220 cd04640 CBS_pair_27 The CBS do 43.2 85 0.0018 24.5 6.1 100 121-224 8-125 (126)
221 cd04624 CBS_pair_11 The CBS do 43.0 1.1E+02 0.0025 22.9 6.6 94 121-223 8-110 (112)
222 KOG1752 Glutaredoxin and relat 41.2 26 0.00057 28.3 2.7 51 143-201 19-73 (104)
223 KOG3171 Conserved phosducin-li 41.1 56 0.0012 30.3 5.1 114 113-236 133-253 (273)
224 TIGR00274 N-acetylmuramic acid 40.1 36 0.00078 32.4 3.9 38 10-48 232-269 (291)
225 PF13778 DUF4174: Domain of un 39.4 1.6E+02 0.0034 24.0 7.1 94 135-235 9-113 (118)
226 cd03023 DsbA_Com1_like DsbA fa 38.9 72 0.0016 25.6 5.2 39 134-178 3-45 (154)
227 PRK13669 hypothetical protein; 38.8 56 0.0012 25.2 4.0 19 217-235 59-77 (78)
228 TIGR02190 GlrX-dom Glutaredoxi 38.7 1.1E+02 0.0023 22.6 5.6 49 142-203 12-64 (79)
229 KOG0911 Glutaredoxin-related p 37.1 18 0.0004 33.3 1.4 90 116-219 3-92 (227)
230 PF02401 LYTB: LytB protein; 37.0 1.1E+02 0.0024 29.1 6.6 103 124-232 169-280 (281)
231 PF03474 DMA: DMRTA motif; In 36.3 60 0.0013 21.8 3.4 26 20-45 13-38 (39)
232 PRK12570 N-acetylmuramic acid- 36.2 43 0.00093 31.9 3.8 38 10-48 233-270 (296)
233 cd03029 GRX_hybridPRX5 Glutare 36.1 1.4E+02 0.0031 21.3 5.8 48 144-203 7-57 (72)
234 smart00250 PLEC Plectin repeat 34.8 16 0.00035 23.7 0.5 17 196-212 8-24 (38)
235 PTZ00062 glutaredoxin; Provisi 34.1 1.9E+02 0.004 26.1 7.4 81 105-201 86-174 (204)
236 PHA03050 glutaredoxin; Provisi 33.0 1.2E+02 0.0027 24.2 5.5 54 138-203 14-76 (108)
237 PF01873 eIF-5_eIF-2B: Domain 32.7 21 0.00045 29.9 0.9 78 114-236 19-96 (125)
238 KOG1672 ATP binding protein [P 32.6 44 0.00096 30.4 3.0 96 127-231 76-175 (211)
239 PF07319 DnaI_N: Primosomal pr 32.5 24 0.00052 27.7 1.2 22 150-171 20-41 (94)
240 PF07293 DUF1450: Protein of u 31.7 81 0.0018 24.3 4.0 30 199-235 48-77 (78)
241 PF07912 ERp29_N: ERp29, N-ter 31.2 1.3E+02 0.0029 25.3 5.4 59 171-234 54-119 (126)
242 PRK10638 glutaredoxin 3; Provi 30.4 1.6E+02 0.0036 21.7 5.6 49 144-203 8-59 (83)
243 KOG2603 Oligosaccharyltransfer 30.4 77 0.0017 30.8 4.4 55 178-234 109-166 (331)
244 KOG0944 Ubiquitin-specific pro 28.8 64 0.0014 34.4 3.8 41 8-50 635-675 (763)
245 PF03646 FlaG: FlaG protein; 28.3 1E+02 0.0022 24.4 4.2 29 196-228 67-95 (107)
246 KOG2456 Aldehyde dehydrogenase 28.2 87 0.0019 31.6 4.5 47 110-169 334-380 (477)
247 cd04595 CBS_pair_DHH_polyA_Pol 28.0 1.6E+02 0.0034 22.0 5.2 97 116-223 4-108 (110)
248 COG1999 Uncharacterized protei 27.4 2.1E+02 0.0045 25.7 6.5 72 156-232 116-206 (207)
249 smart00653 eIF2B_5 domain pres 27.3 82 0.0018 25.7 3.5 66 137-236 18-83 (110)
250 PRK01045 ispH 4-hydroxy-3-meth 26.6 2.5E+02 0.0055 26.9 7.2 105 123-233 169-282 (298)
251 cd04596 CBS_pair_DRTGG_assoc T 26.3 2E+02 0.0042 21.5 5.5 92 122-223 10-106 (108)
252 KOG3425 Uncharacterized conser 26.2 1.9E+02 0.004 24.4 5.4 52 123-181 13-75 (128)
253 PRK10824 glutaredoxin-4; Provi 25.9 3.6E+02 0.0077 22.1 7.1 63 127-201 6-76 (115)
254 COG1453 Predicted oxidoreducta 25.7 3.4E+02 0.0074 27.1 8.0 66 125-206 132-206 (391)
255 PF04221 RelB: RelB antitoxin; 24.9 92 0.002 23.7 3.3 25 24-48 13-37 (83)
256 PF01011 PQQ: PQQ enzyme repea 24.5 92 0.002 19.8 2.8 17 198-214 11-27 (38)
257 cd04605 CBS_pair_MET2_assoc Th 23.6 2.3E+02 0.0049 21.0 5.4 100 114-222 2-107 (110)
258 PRK07738 flagellar protein Fla 23.2 1.6E+02 0.0035 24.4 4.5 33 195-231 75-107 (117)
259 PRK08452 flagellar protein Fla 23.2 1.5E+02 0.0033 24.8 4.5 32 196-231 83-114 (124)
260 TIGR02194 GlrX_NrdH Glutaredox 22.8 2.3E+02 0.005 20.2 5.0 63 144-223 5-69 (72)
261 PF13462 Thioredoxin_4: Thiore 22.6 2E+02 0.0043 23.5 5.2 39 183-228 124-162 (162)
262 cd03023 DsbA_Com1_like DsbA fa 22.5 1.9E+02 0.0041 23.1 5.0 35 185-226 119-153 (154)
263 TIGR00400 mgtE Mg2+ transporte 22.2 3.2E+02 0.0069 27.4 7.4 100 122-229 147-254 (449)
264 TIGR00311 aIF-2beta translatio 21.8 1.1E+02 0.0024 25.8 3.5 76 114-236 25-100 (133)
265 PRK12360 4-hydroxy-3-methylbut 21.8 4E+02 0.0086 25.4 7.5 102 123-232 170-280 (281)
266 TIGR00216 ispH_lytB (E)-4-hydr 20.4 5.5E+02 0.012 24.4 8.2 72 161-232 199-279 (280)
267 PF13848 Thioredoxin_6: Thiore 20.3 5E+02 0.011 21.4 8.0 60 163-233 14-74 (184)
268 PF10671 TcpQ: Toxin co-regula 20.2 83 0.0018 24.0 2.1 34 112-145 34-71 (84)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=271.73 Aligned_cols=237 Identities=30% Similarity=0.508 Sum_probs=180.8
Q ss_pred chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccccCCCCCCCc
Q 021955 5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYE 84 (305)
Q Consensus 5 s~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~~~~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~d~ 84 (305)
..++..+|.+||+||..++.+.|++||++++|||+.||+|||++++.....+.+...|
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~---------------------- 60 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAP---------------------- 60 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCC----------------------
Confidence 3468899999999955599999999999999999999999999886433322100000
Q ss_pred ccCC-CCccccccc-----------------C---CCCCcchHHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEe
Q 021955 85 VCVP-PHAKDLFYN-----------------D---ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNL 143 (305)
Q Consensus 85 VRaP-p~~~etL~~-----------------~---~~~~~~~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVni 143 (305)
.| +.++++|++ + .+...++..+|+.|||||++|||+|+++.|+..|.++.+||||
T Consensus 61 --sp~~~~re~l~~~~~~~d~~~~s~~~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV-- 136 (356)
T KOG1364|consen 61 --SPIEPQREVLFDPLGIMDQSTSSILDPSENQDDESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV-- 136 (356)
T ss_pred --CcccccceeeeccccccccCcccccCcccccchhhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE--
Confidence 02 222333322 0 0123455889999999999999999999999999999999999
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
+.|+.||++|.++|++.+.|||+||||+||++|++|.|.+.|++|+
T Consensus 137 ----------------------------------~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl 182 (356)
T KOG1364|consen 137 ----------------------------------LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFL 182 (356)
T ss_pred ----------------------------------eeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHH
Confidence 5688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcc-cccccccCCCC----------ChHHHHHHHhhHhccCCCCCCCCCcCccccccccccccc-ccc
Q 021955 224 EMLLPFMDRSPRKCA-TIIIERQRASS----------TTPQRNIKASMETIKDTIGVSPSDADVTSADKEATSTTQ-GTA 291 (305)
Q Consensus 224 ~~L~~fl~~~~~~~~-~~~~k~~~~~~----------~~~~~A~~~SL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 291 (305)
..|++||+.+++++. +....++|... .++++|+++|+.++..... .++.....+++.|+|... ..+
T Consensus 183 ~~l~~Fi~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e--~e~~~~s~~ee~e~~~e~~~~~ 260 (356)
T KOG1364|consen 183 SDLNEFIDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTE--FEGQGASDEEELETVLEEDLFV 260 (356)
T ss_pred HHHHHHHhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCccc--ccCCCCcccchhhccccccccc
Confidence 999999999999943 23322322211 1246999999988765422 222234444445666655 789
Q ss_pred CCCCCCCCCCCC
Q 021955 292 YPALPEEPNVDG 303 (305)
Q Consensus 292 ~~~~~~ep~~~~ 303 (305)
+|.+.+||+++-
T Consensus 261 ~~~a~~ep~~~~ 272 (356)
T KOG1364|consen 261 FPVATVEPKGDC 272 (356)
T ss_pred cceeeecCCCCC
Confidence 999999999853
No 2
>smart00594 UAS UAS domain.
Probab=99.96 E-value=7.6e-29 Score=205.10 Aligned_cols=115 Identities=44% Similarity=0.713 Sum_probs=108.7
Q ss_pred hhCCCc-cccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHh
Q 021955 112 LYRPPF-HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (305)
Q Consensus 112 lFrPP~-~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~ 190 (305)
+|.||+ ++||+|+|++|++.|++++|++|||||++||.+|+.|||+||+|++|+++|++|||+|++|+.+++|.++++.
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence 578888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCee----EEEecCCCChHHHHHHH
Q 021955 191 YNMDSIPAVLVIDPITGQK----ICSWCGMINPQPLGEML 226 (305)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~----~~~~~G~~~~~~~l~~L 226 (305)
|++..||+++||+|++|+. +.+.+|.+++++|++.|
T Consensus 82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999999999999998765 34468999999999876
No 3
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.95 E-value=5e-28 Score=197.06 Aligned_cols=113 Identities=47% Similarity=0.820 Sum_probs=110.3
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
||.|+|++|++.||+++||||||||++||..|+.|+|+||+|+.|+++|++|||+|.+++++++|.++++.|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
+||||++|+.+.++.|.+++++|+..|.++++.
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 999998999999999999999999999999875
No 4
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.95 E-value=3.8e-27 Score=194.14 Aligned_cols=114 Identities=22% Similarity=0.350 Sum_probs=108.4
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
||+|+|++|++.||++.||||||||++.|.+|..+||+||+|++|++||++|||+|++|+.++||.++++.+++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCe--eEEEecCCCChHHHHHHHHHHHhhC
Q 021955 200 LVIDPITGQ--KICSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 200 ~IIdprTGe--~~~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
+||+|+.++ .+.+++|.++|++|+..|+.+++++
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999987665 3667999999999999999999864
No 5
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.90 E-value=2.8e-23 Score=175.33 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=103.6
Q ss_pred cccccHHHHHHHH----HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh------------
Q 021955 120 MFNGSFEKAKDAA----LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------ 183 (305)
Q Consensus 120 ~~~gsf~~A~~~A----k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e------------ 183 (305)
||.|+|++|++.| |++.|+|+||||++.+..|..|||++++++.|++||++|||+|.+|+..++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 5899999999999 999999999999999999999999999999999999999999999999987
Q ss_pred ----HHHHHHhcCCCCCceEEEEeCCCC--eeEEEecCCCChHHHHHHHHHHHhhC
Q 021955 184 ----GWKVCSFYNMDSIPAVLVIDPITG--QKICSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 184 ----g~~~~~~Y~~~~~P~i~IIdprTG--e~~~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
+.+.++.+++++||+++||.+..+ +.+.+.+|.++|++++++|.+.++.|
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 445677888999999999986544 45666899999999999999998754
No 6
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.65 E-value=6.1e-16 Score=118.93 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
..+|++|+..|++++|+|||+|++.||..|+.|.|.||.++.|++++++|||+++++.+..++...... ..+|+++|
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ 79 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF 79 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence 468999999999999999999999999999999999999999999999999999999988776542221 33999999
Q ss_pred EeC
Q 021955 202 IDP 204 (305)
Q Consensus 202 Idp 204 (305)
|||
T Consensus 80 ldp 82 (82)
T PF13899_consen 80 LDP 82 (82)
T ss_dssp EET
T ss_pred eCC
Confidence 997
No 7
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=99.57 E-value=6.1e-16 Score=153.47 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=136.7
Q ss_pred hHHHHhhhhCCCccccccccHHHHHHHHHHcC----CeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC
Q 021955 105 SHDILASLYRPPFHVMFNGSFEKAKDAALAQD----KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD 180 (305)
Q Consensus 105 ~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~----KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d 180 (305)
+.+.|.+.|...++-||.|.+..|...|..+. |.|++|||+........||+.|+||+.|++||+++||+|.+++.
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt 226 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT 226 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence 78899999988888889999988888886655 99999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCC----------------CCceEEEEe-CCCCe-eEEEecCCCChHHHHHHHHHHHhhCCCC-ccccc
Q 021955 181 TSEGWKVCSFYNMD----------------SIPAVLVID-PITGQ-KICSWCGMINPQPLGEMLLPFMDRSPRK-CATII 241 (305)
Q Consensus 181 s~eg~~~~~~Y~~~----------------~~P~i~IId-prTGe-~~~~~~G~~~~~~~l~~L~~fl~~~~~~-~~~~~ 241 (305)
+++|..+.+.+.+. .||.+.|+- .++.. .+....|.++..+.+..+..+++.++.. +....
T Consensus 227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~q~~~~ 306 (460)
T KOG1363|consen 227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRLQMRRS 306 (460)
T ss_pred CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHhhccc
Confidence 99999999988876 466665554 11111 1222456666666666665555555433 21222
Q ss_pred ccccCCCC----ChHHHHHHHhhHhccC----------CCCCCCCCcCccccccccccccccccCCCCCCCCCCC
Q 021955 242 IERQRASS----TTPQRNIKASMETIKD----------TIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVD 302 (305)
Q Consensus 242 ~k~~~~~~----~~~~~A~~~SL~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~~~ 302 (305)
.+..|..+ .+++.+|++||++++. ..+++.++ +..+++.+.+-.+.-.++.||.||+++
T Consensus 307 ~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er--~~~~ee~e~~R~~l~~es~lp~EP~a~ 379 (460)
T KOG1363|consen 307 EQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKER--KEEEEERETARQLLALESSLPPEPSAS 379 (460)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhh--hhHHHHHHHHHHHHhhhccCCCCCCcC
Confidence 22112111 3457999999987764 22323333 222221243333467899999999654
No 8
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.51 E-value=2.1e-13 Score=112.12 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcC-CeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh-----------hHHHHHHhcC
Q 021955 125 FEKAKDAALAQD-KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-----------EGWKVCSFYN 192 (305)
Q Consensus 125 f~~A~~~Ak~~~-KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~-----------eg~~~~~~Y~ 192 (305)
+.++++.|++++ |++||+++++||..|+.|...++.++.+.+.++++|+++.++++.. ....++..|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 568899999999 9999999999999999999999999999999999999999998764 3578899999
Q ss_pred CCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 193 ~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
+..+|+++|+++..|+.+..+.|..+.+.|...|..++++
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999984378899999999999998888888764
No 9
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.51 E-value=1.9e-13 Score=114.00 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh-H-HHHHH----hcCCCCCceE
Q 021955 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-G-WKVCS----FYNMDSIPAV 199 (305)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e-g-~~~~~----~Y~~~~~P~i 199 (305)
++|++.|++++|+|||+++++||.+|++|.+.||.+++|.++|+++||++.+|++... - .++.+ .|++..+|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 5789999999999999999999999999999999999999999999999999987632 1 12222 4678999999
Q ss_pred EEEeCCCCeeEEEecC
Q 021955 200 LVIDPITGQKICSWCG 215 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G 215 (305)
+|++| .|+.+....+
T Consensus 85 vfl~~-~G~~~~~~~~ 99 (124)
T cd02955 85 VFLTP-DLKPFFGGTY 99 (124)
T ss_pred EEECC-CCCEEeeeee
Confidence 99999 6898876443
No 10
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.50 E-value=3.6e-14 Score=119.19 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=77.1
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
-+..+|++|++.||+++|+|||++++.||..|+.|.+.+|++++|++++++|||...++++..+.. +. . ....+|++
T Consensus 7 ~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~-~-~g~~vPti 83 (130)
T cd02960 7 IWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS-P-DGQYVPRI 83 (130)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC-c-cCcccCeE
Confidence 345589999999999999999999999999999999999999999999999999888887754310 00 0 11458999
Q ss_pred EEEeCCCCeeEEEecCC
Q 021955 200 LVIDPITGQKICSWCGM 216 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~ 216 (305)
+++|| .|+.+....|.
T Consensus 84 vFld~-~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDP-SLTVRADITGR 99 (130)
T ss_pred EEECC-CCCCccccccc
Confidence 99998 58888777664
No 11
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.38 E-value=5.8e-13 Score=91.11 Aligned_cols=41 Identities=34% Similarity=0.678 Sum_probs=36.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 50 (305)
+++|.+||+| ||+++++|++||+++||||+.||++||+.++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5789999999 7899999999999999999999999999765
No 12
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.37 E-value=3.6e-12 Score=101.29 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh--hHHHHHHhcCCCCCceEEEEeC
Q 021955 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~--eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
+++..|.+++|++||+++.+||.+|+.|.+.++.++.+.+.++++|++..++.+.. ....+++.|++..+|++.|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56778889999999999999999999999988899999999998999999987653 3678999999999999999997
Q ss_pred CCCeeEEEecCCCChHHHHHHH
Q 021955 205 ITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 205 rTGe~~~~~~G~~~~~~~l~~L 226 (305)
-.|+.+....|+.+.++|.+.|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 3588888889999999887765
No 13
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.30 E-value=1e-11 Score=107.97 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh-hHH-HHHH----hcCCCCCc
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-EGW-KVCS----FYNMDSIP 197 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~-eg~-~~~~----~Y~~~~~P 197 (305)
-.++|++.||+++|+|||.|...+|..|++|.++++.|++|.++||+|||-..+|.+.. +-. .|.+ ......+|
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 34799999999999999999999999999999999999999999999999999987763 321 1211 12568999
Q ss_pred eEEEEeCCCCeeEEE
Q 021955 198 AVLVIDPITGQKICS 212 (305)
Q Consensus 198 ~i~IIdprTGe~~~~ 212 (305)
..++++| .|+.+..
T Consensus 105 l~vfltP-dg~p~~~ 118 (163)
T PF03190_consen 105 LTVFLTP-DGKPFFG 118 (163)
T ss_dssp EEEEE-T-TS-EEEE
T ss_pred ceEEECC-CCCeeee
Confidence 9999999 6887755
No 14
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.16 E-value=1.5e-11 Score=98.39 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=78.4
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh------------------HHHHHHhcCC
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------------GWKVCSFYNM 193 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e------------------g~~~~~~Y~~ 193 (305)
||.++|.++|++.++||..|+.|.+.++.+..+...++.+|.++.++.+... ...+++.|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 5678999999999999999999999999999999999989999988887654 2468889999
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
..+|+++++|+ .|+.+.+..|++++++|...|
T Consensus 81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 99999999995 699998899999999998876
No 15
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.12 E-value=3e-10 Score=116.48 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=94.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC--hhHHHHHHhcCCCCCceE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds--~eg~~~~~~Y~~~~~P~i 199 (305)
..+|+++++.|+.++|+++|+++.+||..|+.|.+.++.+++|++.++ +|++.++|++. ++...+++.|++..+|++
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~ 538 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI 538 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence 346889999999999999999999999999999999999999999996 79999999875 456789999999999999
Q ss_pred EEEeCCCCeeE--EEecCCCChHHHHHHHHHH
Q 021955 200 LVIDPITGQKI--CSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 200 ~IIdprTGe~~--~~~~G~~~~~~~l~~L~~f 229 (305)
.++|+ .|+.+ .++.|..++++|++.|.+.
T Consensus 539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 99997 58774 5678999999998888763
No 16
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.12 E-value=1.4e-10 Score=95.44 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCC--CceEEE
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS--IPAVLV 201 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~--~P~i~I 201 (305)
+|++|++.|++++|++||+++.+||.+|+.|.+.+...+.+.. ++.+||...++.+.. .....|++.. +|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC---chhhhcccCCCccceEEE
Confidence 7999999999999999999999999999999998877777665 677899887765432 2234677754 999999
Q ss_pred EeCCCCeeEEE---ecCCCChHHHHHHHHHHHh
Q 021955 202 IDPITGQKICS---WCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 202 IdprTGe~~~~---~~G~~~~~~~l~~L~~fl~ 231 (305)
++| .|+.+.+ .-|..+.+.|...|.....
T Consensus 83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 998 5998775 3466666667666655543
No 17
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.3e-09 Score=93.70 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=95.1
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh--------------HHH
Q 021955 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------GWK 186 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e--------------g~~ 186 (305)
..-+.-++...|.-.+|++|+-+.+..|.-|..|.||++..+.+++++.+||.++-++..+.+ -..
T Consensus 27 s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~E 106 (182)
T COG2143 27 SNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEE 106 (182)
T ss_pred hhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHH
Confidence 334445777788889999999999999999999999999999999999999999999876531 237
Q ss_pred HHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 187 ~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
+++.|+++++||+++.|- +|+.+..+.|+++|++|+..|.=.-+
T Consensus 107 La~kf~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred HHHHhccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999995 89999999999999999987754433
No 18
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.00 E-value=4.5e-09 Score=89.21 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=81.5
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
+.|...+|.+||+|+.+||.+|+.|...+- .+.+-.+..+-|+.++++..+...++..|++..+|+++|+++ .|+.
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~ 89 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE 89 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence 445678999999999999999999954331 222233344556667777766678899999999999999996 6999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhCCC
Q 021955 210 ICSWCGMINPQPLGEMLLPFMDRSPR 235 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~~L~~fl~~~~~ 235 (305)
+..+.|....++|.+.|...+...++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEPL 115 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999987765
No 19
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=98.90 E-value=9.1e-09 Score=100.05 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=102.2
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
-|+|+..+|+..||..++.++|||.+. .-.+++|+|-+|.+..|.+.+...||...++..+..+.+|+..|.+...|.+
T Consensus 3 wfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ 81 (506)
T KOG2507|consen 3 WFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSI 81 (506)
T ss_pred ccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccce
Confidence 489999999999999999999999995 5689999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl 230 (305)
.+|+- +|..+.+..|++.++++.+.|.+.+
T Consensus 82 ffIg~-sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 82 FFIGF-SGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eeecC-CCceeEEeeccccHHHHHHHHHHHH
Confidence 99994 8999999999999999988777653
No 20
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.79 E-value=7e-08 Score=77.06 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCCh-hHHHHHHhcCCCCCceEE
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTS-EGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~-eg~~~~~~Y~~~~~P~i~ 200 (305)
.|++++..+ .+|++||+++.+||.+|+.+. +.+.++.++ ++.|..++.+.. +...+++.|++..+|++.
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 456666443 499999999999999999994 555555443 578999988764 346899999999999988
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 201 VIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 201 IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
++ +.|+.+..+.| ..+.++.+.+.
T Consensus 77 ~~--~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 77 FY--KDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EE--eCCeEEEEEeC-CCHHHHHHHHH
Confidence 87 46999999999 45666666554
No 21
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.2e-08 Score=84.04 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=84.4
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
+-..+..+-...=.+..+++||++|++||.+|+.|..-+ ++-+.+| ...|-|+.++. .+-..++..|.+..+|++
T Consensus 45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~g~~k~~kvdt--D~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-AGKFKLYKVDT--DEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-cCeEEEEEEcc--ccccchHhhcceeeeeEE
Confidence 345566777777789999999999999999999995443 3444444 34688888754 455678999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
+++. +|+.+..+.|..+.+.+...+.+|+.
T Consensus 120 lvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999 59999899999999998888888874
No 22
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.73 E-value=1.1e-07 Score=74.07 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeC
Q 021955 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
|++.+. +..+|.+||+++++||.+|+.+...+ ..+.+.+...+.|..++.+. ...+++.|++..+|+++|++
T Consensus 3 f~~~i~--~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~- 74 (96)
T cd02956 3 FQQVLQ--ESTQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA- 74 (96)
T ss_pred hHHHHH--hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe-
Confidence 444443 24589999999999999999996543 34444445568888887665 45789999999999999997
Q ss_pred CCCeeEEEecCCCChHHHHHHH
Q 021955 205 ITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 205 rTGe~~~~~~G~~~~~~~l~~L 226 (305)
.|+.+..+.|..+.+++...|
T Consensus 75 -~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 -AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred -CCEEeeeecCCCCHHHHHHHh
Confidence 588888899988888766544
No 23
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.65 E-value=2.4e-07 Score=72.53 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=69.8
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
+.++++++||+++++||..|+.+...+ ..+.+.+. ..++|..++.+..+...+++.|++..||++.+.. .|+.
T Consensus 13 ~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~ 87 (104)
T cd02997 13 FLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGKF 87 (104)
T ss_pred HHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCCe
Confidence 345577999999999999999997654 23444444 5688888888876678899999999999987775 5888
Q ss_pred EEEecCCCChHHHHH
Q 021955 210 ICSWCGMINPQPLGE 224 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~ 224 (305)
+..+.|..+++.+++
T Consensus 88 ~~~~~g~~~~~~l~~ 102 (104)
T cd02997 88 VEKYEGERTAEDIIE 102 (104)
T ss_pred eEEeCCCCCHHHHHh
Confidence 888999988887664
No 24
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.62 E-value=3.7e-07 Score=70.94 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=75.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
.-+|++.+.. .++.+||+++.+||..|+.+...+ ..+.+-...++.|+.+|.+ +...+++.|.+..+|++.+
T Consensus 6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence 3456665544 689999999999999999995433 2333444448899988776 5588999999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 202 IDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 202 IdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
+.. |+.+..+.|..+.+.+.+.|.+
T Consensus 78 ~~~--g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FKN--GKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EET--TEEEEEEESSSSHHHHHHHHHH
T ss_pred EEC--CcEEEEEECCCCHHHHHHHHHc
Confidence 984 8888899999899887776653
No 25
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.58 E-value=8.5e-07 Score=69.67 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~II 202 (305)
|+|.-....++ .+|.+||++.++||..|+.+.+-+ +.|.+-++.++.|+.+|.+.. ..++..|++..+|++.|+
T Consensus 1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEE
Confidence 45555555555 889999999999999999996654 445555666788888887643 467889999999999999
Q ss_pred eCCCCeeEEEecCCCChHHHHHHH
Q 021955 203 DPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 203 dprTGe~~~~~~G~~~~~~~l~~L 226 (305)
. .|+.+....|..+.++|.+.|
T Consensus 75 ~--~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 75 K--DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred E--CCeEEEEEeCCccHHHHHHhh
Confidence 6 489999999988888766654
No 26
>PRK10996 thioredoxin 2; Provisional
Probab=98.57 E-value=8.6e-07 Score=74.83 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=71.8
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEE
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~ 211 (305)
..+++|.++|+++.+||..|+.|... | ..+.+-.+.++.|..++.+.. ..+++.|++..+|+++|++ .|+.+.
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~v~ 120 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAPI-F--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQVVD 120 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEEEE
Confidence 34568999999999999999999543 3 334444556788888877653 4689999999999999886 699999
Q ss_pred EecCCCChHHHHHHHHHH
Q 021955 212 SWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 212 ~~~G~~~~~~~l~~L~~f 229 (305)
.+.|..+.+.|.+.|.+.
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 999998888777766543
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.57 E-value=6.6e-07 Score=72.42 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=72.6
Q ss_pred cccccHHHHHHHHH--HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh-ccEEEEEecCCChhHHHHHHhcCCCCC
Q 021955 120 MFNGSFEKAKDAAL--AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMDSI 196 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak--~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~-~nFIfwq~~~ds~eg~~~~~~Y~~~~~ 196 (305)
-|.-+.++..+.+. ..+|++||+++++||..|+.+.+.+. .+.+-++ .++.|..++.+.. ..+++.|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~ 80 (111)
T cd02963 6 KYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAGHE--RRLARKLGAHSV 80 (111)
T ss_pred hheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecccc--HHHHHHcCCccC
Confidence 34445555555553 47899999999999999999976432 3333333 3688888876653 467899999999
Q ss_pred ceEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 197 PAVLVIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 197 P~i~IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
|++.|+. .|+.+....|..+.+.+.+.|
T Consensus 81 Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i 108 (111)
T cd02963 81 PAIVGII--NGQVTFYHDSSFTKQHVVDFV 108 (111)
T ss_pred CEEEEEE--CCEEEEEecCCCCHHHHHHHH
Confidence 9999996 688877788988776654444
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.56 E-value=4.5e-07 Score=72.93 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChhHHHHHH-hcCCCCCceEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCS-FYNMDSIPAVL 200 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~eg~~~~~-~Y~~~~~P~i~ 200 (305)
.+|+ ++..+++.+|.+||+++.+||..|+.|... | ..+.+.++. +|.|..++.+.. ...++. .|++..||+|.
T Consensus 9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence 3444 666778889999999999999999999765 3 345555665 599999988763 234564 69999999999
Q ss_pred EEeCCCCeeEEEecCC-CChHHHHH
Q 021955 201 VIDPITGQKICSWCGM-INPQPLGE 224 (305)
Q Consensus 201 IIdprTGe~~~~~~G~-~~~~~~l~ 224 (305)
++++. |..+..+.|. .+.+.++.
T Consensus 84 ~f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 84 FFPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEcCC-CCCceeccCCCCCHHHHHh
Confidence 99874 4456778884 57776543
No 29
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.3e-07 Score=73.30 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=76.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc--EEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n--FIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
..+|+.....+...+|.|+|++.++||.+|.++ .|.+.++-.++ -+|+.+|+|. -..+++.|++...|++
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF 78 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence 456778888888889999999999999999999 78888888864 6999999998 8899999999999999
Q ss_pred EEEeCCCCeeEEEecCCC
Q 021955 200 LVIDPITGQKICSWCGMI 217 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~ 217 (305)
.++- .|+.+....|..
T Consensus 79 ~f~k--~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 79 VFYK--GGEEVDEVVGAN 94 (106)
T ss_pred EEEE--CCEEEEEEecCC
Confidence 9994 699999988854
No 30
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.52 E-value=6.6e-07 Score=77.89 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=72.3
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh--hHH-------------------HHHHhc
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGW-------------------KVCSFY 191 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~--eg~-------------------~~~~~Y 191 (305)
...+|+++|+++.+||..|+.+. +.+.++.+.++.++.++.+.. +.. .+...|
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999999873 556677777777777775432 112 334456
Q ss_pred CCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 192 ~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
++..+|+..+||+ .|+.+.++.|..+.+++.+.|.+++.
T Consensus 134 ~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 134 GVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 7778999999997 59999999999999999999998874
No 31
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.5e-07 Score=92.73 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC-hh----HHHHHHhcC-CCCCceE
Q 021955 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SE----GWKVCSFYN-MDSIPAV 199 (305)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds-~e----g~~~~~~Y~-~~~~P~i 199 (305)
++|+.+||+++|+|||.|=-++|-.||+|.+..+.|++|.++||+|||..++|.+. |+ =+++++... -...|.-
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 79999999999999999999999999999999999999999999999999996553 22 112333333 3789999
Q ss_pred EEEeCCCCeeE
Q 021955 200 LVIDPITGQKI 210 (305)
Q Consensus 200 ~IIdprTGe~~ 210 (305)
+|+.| .|+-+
T Consensus 113 VfLTP-d~kPF 122 (667)
T COG1331 113 VFLTP-DGKPF 122 (667)
T ss_pred EEECC-CCcee
Confidence 99999 67765
No 32
>PHA02278 thioredoxin-like protein
Probab=98.49 E-value=1.7e-06 Score=69.82 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChh--HHHHHHhcCCCCCceEEEEeCCCCe
Q 021955 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSE--GWKVCSFYNMDSIPAVLVIDPITGQ 208 (305)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~e--g~~~~~~Y~~~~~P~i~IIdprTGe 208 (305)
.+++.++|+++.+||.+|++| .+.+.++-.+ ..-|+.+++|..+ ...+++.|++.+.|++++.. .|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m------~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~ 83 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEIL------KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ 83 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhH------HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence 589999999999999999999 4555555433 2336667766542 45699999999999999998 499
Q ss_pred eEEEecCCCChHHHHH
Q 021955 209 KICSWCGMINPQPLGE 224 (305)
Q Consensus 209 ~~~~~~G~~~~~~~l~ 224 (305)
.+....|..+++.+.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 9999999887776543
No 33
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.48 E-value=1.2e-06 Score=72.12 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--c-EEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--n-FIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
..|++++..+ ++|.++|.+..+||.+|+.| +|-+.++-++ + .+|+.+|+| |-..+++.|.+...|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence 4688888888 89999999999999999999 6777777764 6 779999887 56679999999999999
Q ss_pred EEEeCCCCeeEEE---------ecCCC-ChHHHHHHHHHH
Q 021955 200 LVIDPITGQKICS---------WCGMI-NPQPLGEMLLPF 229 (305)
Q Consensus 200 ~IIdprTGe~~~~---------~~G~~-~~~~~l~~L~~f 229 (305)
+++- .|+-|++ |++.+ +.++||..+...
T Consensus 73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9886 3676655 55555 568888876654
No 34
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.46 E-value=1.4e-06 Score=67.70 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
+|++++..+. +|.++|+++.+||..|+.|.+.+ +.+.+-+..++.|+.++.+ +-..++..|++..+|++.|+.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l---~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVF---EELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHH---HHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEE
Confidence 4666666654 79999999999999999995532 2222222447888888765 344688999999999999996
Q ss_pred CCCCeeEEEecCCCChHHHHHH
Q 021955 204 PITGQKICSWCGMINPQPLGEM 225 (305)
Q Consensus 204 prTGe~~~~~~G~~~~~~~l~~ 225 (305)
.|+.+....|. .++++.+.
T Consensus 77 --~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 77 --NGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred --CCEEEEEEeCC-CHHHHHHh
Confidence 48888888885 45555443
No 35
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.46 E-value=1.4e-06 Score=69.14 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=72.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
..+|++.+. +.+|.+||+++++||..|+.|...+ ..+.+-++..+.|..++.+..+...+++.|++..+|++.|
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 445666653 5688999999999999999996532 2344444556778888888777788999999999999999
Q ss_pred EeCCC---CeeEEEecCCCChHHHHH
Q 021955 202 IDPIT---GQKICSWCGMINPQPLGE 224 (305)
Q Consensus 202 IdprT---Ge~~~~~~G~~~~~~~l~ 224 (305)
+++.. +.....+.|..+.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~ 106 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVD 106 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHH
Confidence 99732 134556788877776544
No 36
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.46 E-value=2.8e-06 Score=67.58 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=64.7
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeE
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI 210 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~ 210 (305)
+.+.+|.++|+++++||.+|+.+...+ ..+.+-.+. +..|..++.|. ...++.|++..+|++.|+. .|+.+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~ 84 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV 84 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence 345799999999999999999995432 223333332 35677777773 3578999999999998886 69999
Q ss_pred EEecCCCChHHHHHHHH
Q 021955 211 CSWCGMINPQPLGEMLL 227 (305)
Q Consensus 211 ~~~~G~~~~~~~l~~L~ 227 (305)
....|. +++.+.+.|.
T Consensus 85 ~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 85 AVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEecC-ChHHHHHHHh
Confidence 888884 7777666554
No 37
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.45 E-value=4.8e-07 Score=91.82 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=84.8
Q ss_pred HHHHHHHcCC--eEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC--ChhHHHHHHhcCCCCCceEEEEe
Q 021955 128 AKDAALAQDK--WLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--TSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 128 A~~~Ak~~~K--wLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d--s~eg~~~~~~Y~~~~~P~i~IId 203 (305)
.++.+..++| ++|||++.+||-.|+.+.|.|++++.|..-+. ++|+.|.|+. +++-..+.+.|++-..|++.+.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 5555555555 99999999999999999999999888876665 8999999876 46677899999999999999999
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHH
Q 021955 204 PITGQKICSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 204 prTGe~~~~~~G~~~~~~~l~~L~~f 229 (305)
+. |+......|+++.+.|++.|+.+
T Consensus 543 ~~-g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQ-GSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CC-CCcCcCCcceecHHHHHHHHHHh
Confidence 85 55444489999999999999875
No 38
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.44 E-value=2e-06 Score=73.54 Aligned_cols=100 Identities=10% Similarity=0.141 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--c-EEEEEecCCChhHHHHHHhcCCCCCce
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--n-FIfwq~~~ds~eg~~~~~~Y~~~~~P~ 198 (305)
...|++|+..+ .+|+++|++..+||.+|++| +|-+.++-.+ + ..|+.+|+| +...+++.|++.+.|.
T Consensus 11 ~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m------~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t 80 (142)
T PLN00410 11 GWAVDQAILAE--EERLVVIRFGHDWDETCMQM------DEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCT 80 (142)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCChhHHHH------HHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCc
Confidence 34567777643 78999999999999999999 6666666654 4 455888887 4558999999987766
Q ss_pred EE-EEeCCCCe-eEEEecC--------CCChHHHHHHHHHHHhhC
Q 021955 199 VL-VIDPITGQ-KICSWCG--------MINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 199 i~-IIdprTGe-~~~~~~G--------~~~~~~~l~~L~~fl~~~ 233 (305)
+. +.- .|+ ++....| ..+.++|++.+..++...
T Consensus 81 ~~~ffk--~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 81 VMFFFR--NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred EEEEEE--CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 66 544 577 5666677 568899999999988754
No 39
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.42 E-value=1.4e-06 Score=71.39 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=73.5
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHH-HhcCCCCCce
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC-SFYNMDSIPA 198 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~-~~Y~~~~~P~ 198 (305)
+-..+|+++... .++++++||+++.+||.+|+.|.-.+ +++.+.++.+..|.++|.+... .++ +.|++..||+
T Consensus 14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PT 87 (113)
T cd03006 14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPV 87 (113)
T ss_pred echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCE
Confidence 446678877554 78899999999999999999995321 2344444556788998877544 467 5899999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHH
Q 021955 199 VLVIDPITGQKICSWCGMINPQPLGE 224 (305)
Q Consensus 199 i~IIdprTGe~~~~~~G~~~~~~~l~ 224 (305)
|.+.- .|+....+.|..+.+.++.
T Consensus 88 l~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEE--CCccceEEeCCCCHHHHHh
Confidence 99994 5777778899888887654
No 40
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.41 E-value=2.1e-06 Score=65.61 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh--hccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCC
Q 021955 128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI 205 (305)
Q Consensus 128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i--~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdpr 205 (305)
....+.++++.+||++.++||..|+.+...+ ..+.+-+ +.++.|..++.+. ...+++.|++..+|++.++++.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 4455566677999999999999999996543 3445556 5678888887665 6688999999999999999973
Q ss_pred CCeeEEEecCCCChHHHHH
Q 021955 206 TGQKICSWCGMINPQPLGE 224 (305)
Q Consensus 206 TGe~~~~~~G~~~~~~~l~ 224 (305)
|..+..+.|..+++++++
T Consensus 82 -~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 82 -SKEPVKYEGPRTLESLVE 99 (101)
T ss_pred -CcccccCCCCcCHHHHHh
Confidence 466777788878877654
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.38 E-value=2.5e-06 Score=67.73 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh---ccEEEEEecCCChhHHHHHHhcCCCCCceEE
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~---~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~ 200 (305)
+++++..++++ ++.+||+++.+||..|+.+... |. .+.+-++ .++.+..++.+. ...+++.|++..+|++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEPV-WN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhChH-HH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence 56677777654 6789999999999999999763 32 2333332 247777776654 34688899999999999
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 201 VIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 201 IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
++.. | .+..+.|..+.+++.+.|.
T Consensus 78 l~~~--~-~~~~~~G~~~~~~l~~~~~ 101 (104)
T cd03000 78 LLKG--D-LAYNYRGPRTKDDIVEFAN 101 (104)
T ss_pred EEcC--C-CceeecCCCCHHHHHHHHH
Confidence 9953 4 3455788777776655544
No 42
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.38 E-value=1.5e-06 Score=69.26 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
+...+|.+||+++.+||..|+.|. +.+.++-+ ..+.|..++.+. +...++..|++..||++.+++. | .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~------p~l~~la~~~~~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~ 83 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFR------PHFNALSSMFPQIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-P 83 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHh------HHHHHHHHHhccCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-c
Confidence 457799999999999999999994 44444333 246777776552 3357889999999999999985 5 6
Q ss_pred EEEecCCCChHHHHH
Q 021955 210 ICSWCGMINPQPLGE 224 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~ 224 (305)
+..+.|..+.+.+++
T Consensus 84 ~~~~~G~~~~~~l~~ 98 (100)
T cd02999 84 RVRYNGTRTLDSLAA 98 (100)
T ss_pred eeEecCCCCHHHHHh
Confidence 677899888776554
No 43
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.38 E-value=3.8e-06 Score=62.69 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=65.7
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
+-.+++.+||++.++||..|+.+.+ .+.++.+ .++.|..++.+. ...++..|++..+|+++++. .|+.
T Consensus 6 ~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~~ 75 (93)
T cd02947 6 LIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGKE 75 (93)
T ss_pred HHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCEE
Confidence 3444499999999999999999954 4444444 678888887665 55688899999999999997 4888
Q ss_pred EEEecCCCChHHHHHHH
Q 021955 210 ICSWCGMINPQPLGEML 226 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~~L 226 (305)
+..+.|..+.+.+...|
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 88899988776655543
No 44
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.37 E-value=3.2e-06 Score=67.49 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=65.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc------cEEEEEecCCChhHHHHHHhcCCCC
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSEGWKVCSFYNMDS 195 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~------nFIfwq~~~ds~eg~~~~~~Y~~~~ 195 (305)
..+|++++ +.++++||+++++||..|+.|...+ . .+.+.+++ ++.|..++.+.. ..+++.|++.+
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~-~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~ 78 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIF-E--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK 78 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHH-H--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence 34566544 5579999999999999999996542 1 12222221 477888887764 46899999999
Q ss_pred CceEEEEeCCCCee-EEEecCCCChHHHHH
Q 021955 196 IPAVLVIDPITGQK-ICSWCGMINPQPLGE 224 (305)
Q Consensus 196 ~P~i~IIdprTGe~-~~~~~G~~~~~~~l~ 224 (305)
||++.+.- .|+. ...+.|..+.+++++
T Consensus 79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 79 YPTLKLFR--NGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred CCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence 99999985 4763 466788777776554
No 45
>PRK09381 trxA thioredoxin; Provisional
Probab=98.37 E-value=5.7e-06 Score=65.94 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
+|.+.. .+.+++++|+++++||..|+.+...+ +.+.+-.+.++-|..++.+.. ..+++.|++..+|+++|+.
T Consensus 12 ~~~~~v---~~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 12 SFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred hHHHHH---hcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCCEEEEEe
Confidence 344444 24589999999999999999994322 122223334567777777654 3467889999999999995
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHHH
Q 021955 204 PITGQKICSWCGMINPQPLGEMLLPFM 230 (305)
Q Consensus 204 prTGe~~~~~~G~~~~~~~l~~L~~fl 230 (305)
.|+.+....|..+.+++...|...+
T Consensus 84 --~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 84 --NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 6888888899888877665555543
No 46
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.35 E-value=3.3e-06 Score=66.64 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh---hccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i---~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
.+|++.+ +..++.+||+++++||..|+.|. +.+.++. +.++.|..++.+. ...+++.|++..||++
T Consensus 9 ~~f~~~i---~~~~~~v~v~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 9 EDFPELV---LNRKEPWLVDFYAPWCGPCQALL------PELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTI 77 (104)
T ss_pred HHHHHHH---hcCCCeEEEEEECCCCHHHHHHH------HHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEE
Confidence 3555554 34577999999999999999995 3444433 4456788887765 4568999999999999
Q ss_pred EEEeCCCCeeEEEecCCCC-hHHHHH
Q 021955 200 LVIDPITGQKICSWCGMIN-PQPLGE 224 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~-~~~~l~ 224 (305)
.++.. .|+.+..+.|..+ .+++.+
T Consensus 78 ~~~~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 78 RLYPG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred EEEcC-CCCCceEccCCCCCHHHHHh
Confidence 99985 3477888999876 776543
No 47
>PTZ00051 thioredoxin; Provisional
Probab=98.32 E-value=6e-06 Score=64.23 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeC
Q 021955 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
+.+....+.+++++|+++.+||..|+.+. +.+.++.++ ++.|..++.+ +...+++.|++..+|+++|+.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIA------PFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHh------HHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence 33444567899999999999999999994 344444443 4677777655 456789999999999988774
Q ss_pred CCCeeEEEecCCCChHH
Q 021955 205 ITGQKICSWCGMINPQP 221 (305)
Q Consensus 205 rTGe~~~~~~G~~~~~~ 221 (305)
.|+.+..+.|. .+++
T Consensus 80 -~g~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 80 -NGSVVDTLLGA-NDEA 94 (98)
T ss_pred -CCeEEEEEeCC-CHHH
Confidence 69999888885 4443
No 48
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.32 E-value=9.4e-06 Score=66.89 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=65.6
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEE
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~ 211 (305)
.++.++|+++.+||.+|++| .+.+.++..+ ...|+.+|+|. ...++..|++.+.|+++++- .|+.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m------~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~ 82 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQM------DEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK 82 (114)
T ss_pred CCCEEEEEEECCCChhHHHH------HHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence 68999999999999999999 5667666655 24588888775 45799999999999999998 589887
Q ss_pred EecCC---------C-ChHHHHHHHHH
Q 021955 212 SWCGM---------I-NPQPLGEMLLP 228 (305)
Q Consensus 212 ~~~G~---------~-~~~~~l~~L~~ 228 (305)
...|. + +.++||+.+..
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 76553 2 45666665543
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.31 E-value=1.1e-05 Score=62.21 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=67.9
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
+..+|.++|+++++||..|+.+...+ ..+.+-++.++.|+.++.+.. ..+++.|.+..+|+++++. .|+.+..
T Consensus 11 ~~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~ 83 (101)
T TIGR01068 11 ASSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDR 83 (101)
T ss_pred hhcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeee
Confidence 34578999999999999999996543 244434456688888877654 4578899999999999995 5887777
Q ss_pred ecCCCChHHHHHHHHH
Q 021955 213 WCGMINPQPLGEMLLP 228 (305)
Q Consensus 213 ~~G~~~~~~~l~~L~~ 228 (305)
..|..+.+++...|.+
T Consensus 84 ~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 84 SVGALPKAALKQLINK 99 (101)
T ss_pred ecCCCCHHHHHHHHHh
Confidence 8888887776666554
No 50
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.29 E-value=5.9e-06 Score=64.08 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
+|++++ .+++.++|+++++||..|+.+- ..| +.+.+-++. ++.|..++ ..+...+++.|++..+|++.+
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVD--ATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEE--ccchHHHHHhCCCCcCCEEEE
Confidence 455554 3799999999999999999983 344 334555554 56666554 455678899999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 202 IDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 202 IdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
+++ |+.+..+.|..+.+++...|.+
T Consensus 76 ~~~--~~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 76 FPK--GKKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ecC--CCcceeecCCCCHHHHHHHHHh
Confidence 996 3437778998888876555543
No 51
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.27 E-value=5.9e-06 Score=65.03 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~II 202 (305)
.+|++.+ ..+|.+||+++++||..|+.|...+ ..+.+-++.++.|..++.+.. ..+++.|++..||++.++
T Consensus 9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTW---REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred hhHHHHh----cCCCeEEEEEECCCChHHHHhHHHH---HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence 3466554 3569999999999999999995422 223444456788888888753 568999999999999988
Q ss_pred eCCCCeeEEEecCCCChHHHH
Q 021955 203 DPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 203 dprTGe~~~~~~G~~~~~~~l 223 (305)
. .|+.+..+.|..+.+.+.
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 80 P--SGMNPEKYYGDRSKESLV 98 (101)
T ss_pred c--CCCCcccCCCCCCHHHHH
Confidence 4 588777788988877654
No 52
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.26 E-value=8.7e-06 Score=63.89 Aligned_cols=91 Identities=7% Similarity=0.120 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh-ccEEEEEecCCChhHHHHHHhcCCCCCceEE
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~-~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~ 200 (305)
..+|++++ +++| ||+++.+||..|+.+...+ . .+.+..+ .++.|..++.+.. ..+++.|++..||++.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~~-~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPEW-E--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHHH-H--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence 45677654 3556 6999999999999995432 1 2222233 2578888887654 3588999999999998
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 201 VIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 201 IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
++. .|+ +..+.|..+.+++.+.|
T Consensus 77 ~~~--~g~-~~~~~G~~~~~~l~~~i 99 (101)
T cd02994 77 HAK--DGV-FRRYQGPRDKEDLISFI 99 (101)
T ss_pred EeC--CCC-EEEecCCCCHHHHHHHH
Confidence 873 576 46788988877665544
No 53
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.24 E-value=2.9e-06 Score=68.71 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccC----------------CCHHHHHHhhccEEEEEecCCChhHHHHHHhcCC
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTW----------------GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM 193 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw----------------~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~ 193 (305)
..+...+|.++|++..+||..|+.+.+.+= +.+.+.++++++-+-|.+..+ ....+++.|++
T Consensus 14 ~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~i 91 (123)
T cd03011 14 DLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWGV 91 (123)
T ss_pred eHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCCC
Confidence 334455699999999999999999843321 235555566554444443332 22468889999
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
..+|++.|||+ .| ....+.|..+++.+.+++
T Consensus 92 ~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 92 SVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred CcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 99999999997 46 777889999999887764
No 54
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.24 E-value=6e-06 Score=64.38 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=64.9
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
.+..+|+++|+++++||..|+.+...+ ..+.+.++ .++.|..++.+.+ ...+++.|++..+|++.++++ .|+.
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~-~~~~ 88 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAPEY---EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPK-GSTE 88 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhChHH---HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeC-CCCC
Confidence 345678999999999999999994432 22233333 3588888876664 567899999999999999986 3566
Q ss_pred EEEecCCCChHHHHH
Q 021955 210 ICSWCGMINPQPLGE 224 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~ 224 (305)
...+.|..+.+++.+
T Consensus 89 ~~~~~g~~~~~~l~~ 103 (105)
T cd02998 89 PVKYEGGRDLEDLVK 103 (105)
T ss_pred ccccCCccCHHHHHh
Confidence 666888877776654
No 55
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.22 E-value=1.2e-05 Score=70.82 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=69.5
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC-hh-HHH-------------------HHHhcCC
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SE-GWK-------------------VCSFYNM 193 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds-~e-g~~-------------------~~~~Y~~ 193 (305)
.+|+++||+..+||.+|+.. -+.+.++-+.++.++.++.++ .+ ..+ +...|++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e------~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAE------HQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHH------HHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 68999999999999999987 455666666677777776543 22 222 3335677
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
..+|+..|||+ .|+.+..+.|.++.+++-..+...+..
T Consensus 141 ~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 141 YGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 88999999997 599999999999888887777777754
No 56
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.20 E-value=2e-05 Score=74.03 Aligned_cols=94 Identities=13% Similarity=0.007 Sum_probs=74.2
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChh---------HHHHHHhcCCCCCceEEE
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE---------GWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~e---------g~~~~~~Y~~~~~P~i~I 201 (305)
+.-.+|++||++..+||..|+.+ .+.+.++.++ ++.+..+++|... ...+++.|++..+|++.|
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 34458999999999999999998 7788888776 3666667766521 134688999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 202 IDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 202 IdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
+++.+|+...+..|.++.+++.+.+.....
T Consensus 236 v~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 236 ADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 998766665566799999999888887654
No 57
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.18 E-value=1e-05 Score=63.08 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCe--
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ-- 208 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe-- 208 (305)
+..+|.+||+++++||..|+.|...+ ..+.+.++. ++.|..+|.+.. .++..|.+..+|++.++.. |+
T Consensus 15 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~--~~~~ 86 (104)
T cd02995 15 LDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA--GDKS 86 (104)
T ss_pred hCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC--CCcC
Confidence 45578999999999999999996544 455555554 699999988764 4677888899999999974 44
Q ss_pred eEEEecCCCChHHHHH
Q 021955 209 KICSWCGMINPQPLGE 224 (305)
Q Consensus 209 ~~~~~~G~~~~~~~l~ 224 (305)
....+.|..+...|++
T Consensus 87 ~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 87 NPIKYEGDRTLEDLIK 102 (104)
T ss_pred CceEccCCcCHHHHHh
Confidence 4556788777776654
No 58
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.18 E-value=2.4e-05 Score=68.88 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~ 200 (305)
..|.+++..+. .+++++|+|+.+||.+|+.| ++.+.++..+ +..|+.++++.. .++..|++...|+|+
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m------~~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAAL------NSSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHH------HHHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 45555553322 24699999999999999999 4566666665 477899888864 789999999999999
Q ss_pred EEeCCCCeeEEEecCCC---ChHHHHHHHHHHHhh
Q 021955 201 VIDPITGQKICSWCGMI---NPQPLGEMLLPFMDR 232 (305)
Q Consensus 201 IIdprTGe~~~~~~G~~---~~~~~l~~L~~fl~~ 232 (305)
|+- .|+.+..+.|.. ..+=..+.|..||.+
T Consensus 141 lyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 141 VYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 997 499988877652 123335566666654
No 59
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.17 E-value=2.1e-05 Score=61.31 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
.+|++++. .+ ++||+++++||..|+.+...+ . .+.+-.+. ++.|..++.+... .+++.|++..+|++
T Consensus 8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~-~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~ 77 (102)
T cd03005 8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTW-E--QLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL 77 (102)
T ss_pred HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHH-H--HHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence 34666653 33 499999999999999995432 1 23333333 6888888766543 68889999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHH
Q 021955 200 LVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
.++. .|+.+..+.|..+.+++.
T Consensus 78 ~~~~--~g~~~~~~~G~~~~~~l~ 99 (102)
T cd03005 78 LLFK--DGEKVDKYKGTRDLDSLK 99 (102)
T ss_pred EEEe--CCCeeeEeeCCCCHHHHH
Confidence 9995 477777789988766543
No 60
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.15 E-value=1.2e-05 Score=65.17 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~ 200 (305)
..|.+.+..+. .+++++|+++++||.+|+.| .+.+.++..+ +..|+.++.+.. .+++.|++.++|+++
T Consensus 12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l------~~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKIL------DSHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLL 81 (113)
T ss_pred HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHH------HHHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEE
Confidence 34555543221 25999999999999999999 4555555554 356777777644 899999999999999
Q ss_pred EEeCCCCeeEEEecCC
Q 021955 201 VIDPITGQKICSWCGM 216 (305)
Q Consensus 201 IIdprTGe~~~~~~G~ 216 (305)
++. .|+.+..+.|.
T Consensus 82 ~f~--~G~~v~~~~G~ 95 (113)
T cd02957 82 VYK--NGELIDNIVGF 95 (113)
T ss_pred EEE--CCEEEEEEecH
Confidence 997 49999888774
No 61
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=2.1e-05 Score=67.35 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=68.1
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh--------------------HHHHHHhcCCC
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------GWKVCSFYNMD 194 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e--------------------g~~~~~~Y~~~ 194 (305)
.+|+++|++.++||..|+...+.+ +....++-+.++.++.++.+... ...+.+.|.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 579999999999999998875333 33344444455777777766432 23667788999
Q ss_pred CCceEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 195 ~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
.+|++.|||+ .|+.+..+.|..+.+++.+.|..
T Consensus 138 ~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 138 PLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 9999999997 69999899998888887666653
No 62
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.12 E-value=1.3e-05 Score=69.10 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=65.1
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChh-----------HHHHHHhc---CCCCCc
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE-----------GWKVCSFY---NMDSIP 197 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~e-----------g~~~~~~Y---~~~~~P 197 (305)
....++.||||..+||.+|+.. .+.+.++-++ +|.+..++.|... +.....+| ++..+|
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iP 120 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTP 120 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCC
Confidence 3446777999999999999998 6777777665 3555555555321 22233455 788999
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021955 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~f 229 (305)
+..|||+..|..+.+..|.++.+++.+.+.+.
T Consensus 121 Tt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 121 ATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99999986555566788999988877776654
No 63
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.06 E-value=4.8e-05 Score=59.31 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=61.1
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
.+.++++||+++++||..|+.+...+ ..+.+-+...+.|..++.+ +...+++.|++..+|++.++++. ......
T Consensus 15 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~-~~~~~~ 88 (103)
T cd03001 15 LNSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAG-KNSPQD 88 (103)
T ss_pred hcCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCC-Ccceee
Confidence 35577899999999999999994332 2233333445666666554 45578899999999999999852 245566
Q ss_pred ecCCCChHHHHH
Q 021955 213 WCGMINPQPLGE 224 (305)
Q Consensus 213 ~~G~~~~~~~l~ 224 (305)
+.|..+.+++++
T Consensus 89 ~~g~~~~~~l~~ 100 (103)
T cd03001 89 YQGGRTAKAIVS 100 (103)
T ss_pred cCCCCCHHHHHH
Confidence 888887776654
No 64
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.04 E-value=4.4e-05 Score=62.23 Aligned_cols=77 Identities=9% Similarity=0.203 Sum_probs=60.4
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCC
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTG 207 (305)
..+.+++++++|+++.+||.+|+.| .+.+.++.++ +.-|+.+|.+. -..+++.|++...|+++++. .|
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~------~p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~G 85 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIM------DKHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--NG 85 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHH------HHHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--CC
Confidence 3334567999999999999999999 4566666654 36777776555 44689999999999999998 48
Q ss_pred eeEEEecCC
Q 021955 208 QKICSWCGM 216 (305)
Q Consensus 208 e~~~~~~G~ 216 (305)
+.+..+.|.
T Consensus 86 ~~v~~~~g~ 94 (113)
T cd02989 86 KTVDRIVGF 94 (113)
T ss_pred EEEEEEECc
Confidence 988887764
No 65
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.98 E-value=0.00011 Score=60.96 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCCh---------hHHHHHHhcCC
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNM 193 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~---------eg~~~~~~Y~~ 193 (305)
+.++..+ .-+.++..+|+|..+||.+|++| .|.+.++++++ .-++.++++.. +-..+.+.|++
T Consensus 12 t~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRALE-ALDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHHH-HHHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 3444333 34668899999999999999999 78888888864 44666666632 33467777765
Q ss_pred C----CCceEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHH
Q 021955 194 D----SIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFM 230 (305)
Q Consensus 194 ~----~~P~i~IIdprTGe~~~~~~G~-~~~~~~l~~L~~fl 230 (305)
. ..|+++++. .|+.+.++.|. .+.++ |..|+
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~----l~~~~ 120 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQE----LQDIA 120 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHH----HHHHh
Confidence 4 499999998 59999999885 34444 55554
No 66
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.98 E-value=8e-05 Score=61.82 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcc--ch--hhhhccCCCHHHHHHh-hccEEEEEecCCChhHHHHHHhcCCCCCc
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFS--SL--MLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~--c~--~lnRDvw~n~~V~~~i-~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P 197 (305)
.+|++.+ ++..+.++|++...||.+ |+ ++-+.+ .+.-.+++ .....|..+|++.. ..+++.|++.++|
T Consensus 17 ~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d~~--~~La~~~~I~~iP 89 (120)
T cd03065 17 KNYKQVL---KKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSKKD--AKVAKKLGLDEED 89 (120)
T ss_pred hhHHHHH---HhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCCCC--HHHHHHcCCcccc
Confidence 4455443 566789999999999987 88 553222 23334444 34588999887744 7899999999999
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021955 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl 230 (305)
+|.++. .|+.+. +.|..+.+.+++.|.+.+
T Consensus 90 Tl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999997 588776 999999988888777654
No 67
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.98 E-value=9.1e-05 Score=60.31 Aligned_cols=91 Identities=10% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCe
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ 208 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe 208 (305)
.+.+.++-++|+++.+||.+|+.+.+ .+.++... ..-|..++.+ +...++..|++...|+++|.+. |.
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~------~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~--g~ 86 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQ------LLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQD--GG 86 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHH------HHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeC--Ce
Confidence 44566778999999999999999843 34444432 3456667666 4568999999999999999984 22
Q ss_pred eEE--EecCCCChHHHHHHHHHHHh
Q 021955 209 KIC--SWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 209 ~~~--~~~G~~~~~~~l~~L~~fl~ 231 (305)
... .+.|..+..+|.+.|...+.
T Consensus 87 ~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecceEEEEecCchHHHHHHHHHHHh
Confidence 222 47788788888777776654
No 68
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.97 E-value=2.9e-05 Score=63.39 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=57.8
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCC---------------------hhHHHHHH
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT---------------------SEGWKVCS 189 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds---------------------~eg~~~~~ 189 (305)
+.-++|+++|++.++||..|+.+-. .+.++-++. +.++.++.+. .....++.
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 4445899999999999999998643 333333322 4344443211 12335677
Q ss_pred hcCCCCCceEEEEeCCCCeeEEEecCCCChHH
Q 021955 190 FYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (305)
Q Consensus 190 ~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~ 221 (305)
.|++..+|+..|||+ .|+.+.++.|.++.+.
T Consensus 95 ~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 95 DLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred hcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 889999999999997 6999999999887664
No 69
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.97 E-value=8.1e-05 Score=68.16 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=74.7
Q ss_pred ccccHHHHHHHHH-HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 121 FNGSFEKAKDAAL-AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 121 ~~gsf~~A~~~Ak-~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
-..+|++.....+ ..++.+||+++.+||..|+.+... | +.+.+-++..+.|..+|.+ +...+++.|++..||++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTL 110 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEE
Confidence 3557887665543 356888999999999999999764 2 4455555556667666554 45678999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl 230 (305)
.+++ .|+.+....|..+.+++.+-+.+-+
T Consensus 111 ~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 111 LLFD--KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred EEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999 4877766678777777655444444
No 70
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.96 E-value=4e-05 Score=59.35 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc----cEEEEEecCCCh--h-------------------H
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDTS--E-------------------G 184 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~----nFIfwq~~~ds~--e-------------------g 184 (305)
..++..+|++||++..+||..|+... +.+.++.++ ++.++.++.+.. + .
T Consensus 13 ~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 13 SLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred ehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 33444589999999999999998763 444444433 567777777652 2 2
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCeeEEEecC
Q 021955 185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCG 215 (305)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G 215 (305)
..+.+.|++..+|++.|||+ .|+.+..+.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 56788889999999999998 5888877765
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.94 E-value=5e-05 Score=62.43 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc------cEEEEEecCCChh----------------------H
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSE----------------------G 184 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~------nFIfwq~~~ds~e----------------------g 184 (305)
.-++|++||++..+||..|+.+. +.+.++.++ ++.++.++.|..+ .
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 34689999999999999999884 444444332 4555555555332 2
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 185 WKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
..+++.|++..+|++.|||+ .|+.+..
T Consensus 89 ~~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 46778899999999999997 5876544
No 72
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.80 E-value=9.2e-05 Score=57.93 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=60.8
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHh---hccEEEEEecCCChhHHHHHHhcCCC--CCceEEEEeCCCCeeE
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKI 210 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i---~~nFIfwq~~~ds~eg~~~~~~Y~~~--~~P~i~IIdprTGe~~ 210 (305)
+++++|.+.++||.+|..+- +.+.++. +..+.|..+|.+. ...+++.|++. .+|++++++..+|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~------~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~ 83 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELR------ERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKY 83 (103)
T ss_pred CCCEEEEEEcCChhhHHHHH------HHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEeccccccc
Confidence 78999999999999999994 4444444 4457777765544 66799999998 9999999997556665
Q ss_pred EEecCCCChHHHHHHHH
Q 021955 211 CSWCGMINPQPLGEMLL 227 (305)
Q Consensus 211 ~~~~G~~~~~~~l~~L~ 227 (305)
....|..+.+.+.+-|.
T Consensus 84 ~~~~~~~~~~~l~~fi~ 100 (103)
T cd02982 84 LMPEEELTAESLEEFVE 100 (103)
T ss_pred CCCccccCHHHHHHHHH
Confidence 44445556655444443
No 73
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.78 E-value=0.00014 Score=60.25 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=55.5
Q ss_pred cCCeEEEEeec-------CCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChh-----HHHHHHhcCCC-CCce
Q 021955 135 QDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSE-----GWKVCSFYNMD-SIPA 198 (305)
Q Consensus 135 ~~KwLLVniq~-------~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~e-----g~~~~~~Y~~~-~~P~ 198 (305)
.+|+++|++++ +||.+|+++ .+.|.++..+ +..|+.++++... ...+...|++. ..|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~------~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKA------EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhh------chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 47999999999 999999999 6677776654 6789999987633 46788999998 9999
Q ss_pred EEEEeCCCCeeE
Q 021955 199 VLVIDPITGQKI 210 (305)
Q Consensus 199 i~IIdprTGe~~ 210 (305)
+.++. +|+++
T Consensus 94 ~~~~~--~~~~l 103 (119)
T cd02952 94 LLRWK--TPQRL 103 (119)
T ss_pred EEEEc--CCcee
Confidence 99995 56554
No 74
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.77 E-value=0.00019 Score=62.00 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc----cEEEEEecCCChhHHHHHHhcCCCC---
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDTSEGWKVCSFYNMDS--- 195 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~----nFIfwq~~~ds~eg~~~~~~Y~~~~--- 195 (305)
.+|++.+. ...++.++|+++.+||.+|+.| .+.+.++.++ ++.|..+|.+.. ..+++.|++..
T Consensus 36 ~~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~l------~p~l~~la~~~~~~~v~f~~VDvd~~--~~la~~~~V~~~~~ 105 (152)
T cd02962 36 KTLEEELE--RDKRVTWLVEFFTTWSPECVNF------APVFAELSLKYNNNNLKFGKIDIGRF--PNVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHHH--hcCCCEEEEEEECCCCHHHHHH------HHHHHHHHHHcccCCeEEEEEECCCC--HHHHHHcCceecCC
Confidence 34555443 2357899999999999999999 4555555543 588999987764 36888899877
Q ss_pred ---CceEEEEeCCCCeeEEEecC
Q 021955 196 ---IPAVLVIDPITGQKICSWCG 215 (305)
Q Consensus 196 ---~P~i~IIdprTGe~~~~~~G 215 (305)
+|++.+.. .|+.+....|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99999997 6998888775
No 75
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.77 E-value=0.00021 Score=58.16 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
.+|++... ..+|.+||+++++||..|+.|.. +|. .+.+-+++ .+.|..++.+......+++.|++..||++
T Consensus 9 ~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 9 ASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred HhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 34565554 44689999999999999999965 332 24444443 26667777666667889999999999999
Q ss_pred EEEeCC
Q 021955 200 LVIDPI 205 (305)
Q Consensus 200 ~IIdpr 205 (305)
.++.+.
T Consensus 83 ~lf~~~ 88 (114)
T cd02992 83 RYFPPF 88 (114)
T ss_pred EEECCC
Confidence 999763
No 76
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.76 E-value=0.00013 Score=71.49 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh---ccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~---~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
.+|++++ +++|.+||+++++||..|+.|...+ ..+.+.++ .++.|..++.+. ...+++.|++..||++
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL 79 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence 3455544 5688999999999999999996543 23334443 237788776654 4689999999999999
Q ss_pred EEEeCCCCee-EEEecCCCChHHHHHHHHHHHh
Q 021955 200 LVIDPITGQK-ICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 200 ~IIdprTGe~-~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
.++. .|+. +..+.|..+.+.+.+-|.+.+.
T Consensus 80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9996 4666 7778998888887776666554
No 77
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.74 E-value=0.00019 Score=72.27 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=78.7
Q ss_pred HHhhhhCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChhHH
Q 021955 108 ILASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGW 185 (305)
Q Consensus 108 ~la~lFrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~eg~ 185 (305)
.-+++|-.+..+ +-..+|++.+.. +..+|++||+++.+||..|+.|...+ +.+.+-++. ++.|..++.|..+-.
T Consensus 343 ~~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~ 418 (463)
T TIGR00424 343 AVADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKE 418 (463)
T ss_pred ccccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccH
Confidence 356788666544 456678887643 67899999999999999999996543 334433333 367887887765433
Q ss_pred HHHHhcCCCCCceEEEEeCCCCeeEEEec-CCCChHHHHHHH
Q 021955 186 KVCSFYNMDSIPAVLVIDPITGQKICSWC-GMINPQPLGEML 226 (305)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~~~~~~-G~~~~~~~l~~L 226 (305)
-.++.|++..||+|.++... +.....+. |.-+.+.|+.-+
T Consensus 419 ~~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv 459 (463)
T TIGR00424 419 FAKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFV 459 (463)
T ss_pred HHHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHH
Confidence 44578999999999999853 23344565 467777765433
No 78
>PTZ00102 disulphide isomerase; Provisional
Probab=97.73 E-value=0.00015 Score=72.02 Aligned_cols=97 Identities=9% Similarity=0.195 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh---ccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~---~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
.+|++++ ++++.+||+++++||..|+.|...+ ..+.+.++ .++.|..++.+ +...+++.|++..||++
T Consensus 40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~---~~~a~~~~~~~~~i~~~~vd~~--~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 40 STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY---KKAAKMLKEKKSEIVLASVDAT--EEMELAQEFGVRGYPTI 110 (477)
T ss_pred hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH---HHHHHHHHhcCCcEEEEEEECC--CCHHHHHhcCCCcccEE
Confidence 3455544 5678999999999999999996553 12233333 24788877654 45679999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
.|+.. |..+ .+.|..+++.+++-|.+.+.
T Consensus 111 ~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 111 KFFNK--GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence 99985 5555 78898999988887777654
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.71 E-value=0.00018 Score=73.32 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=61.1
Q ss_pred cCCeEEEEeecCCCccchhhhhcc---------------------C----CCHHHHHHhhc-cEEEEEecCCChhHHHHH
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDT---------------------W----GNEAVSQIISV-NFIFWQEYDDTSEGWKVC 188 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDv---------------------w----~n~~V~~~i~~-nFIfwq~~~ds~eg~~~~ 188 (305)
.+|++||||.++||.+|+.+-..+ + ....++++++. +|..|.+..| ....++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D--~~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTD--NGGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecc--ccHHHH
Confidence 689999999999999999862111 0 01122333321 1222222222 244678
Q ss_pred HhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 189 ~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
+.|++..+|+++|||+ .|+.+....|.++.+++.+.|.
T Consensus 133 k~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 8999999999999997 6999999999998877665555
No 80
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.67 E-value=0.00084 Score=55.10 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=78.5
Q ss_pred HHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEeecCC--CccchhhhhccCCCHHHHHHhhcc---EEEEEecCC
Q 021955 106 HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDD 180 (305)
Q Consensus 106 ~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~--~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~d 180 (305)
..+|.++-+=|- .-..+|++-. +.+..++|.++.+| |.+|..+ .+.+.++.+++ +.|+.++.+
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid 70 (111)
T cd02965 3 VARLQTRHGWPR--VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRA 70 (111)
T ss_pred hHHHHHhcCCcc--cccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECC
Confidence 456666554332 3466788555 67788899999986 9999999 67777777763 557788777
Q ss_pred ChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 181 s~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
... .++..|++.+.|+++++. .|+.+....|..+-+++.
T Consensus 71 ~~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 71 DEQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 654 899999999999999998 599999999988877764
No 81
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.59 E-value=0.00053 Score=60.92 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=68.7
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCCh-----------hHHHHHHhcCC--CCCceEEEEeCC
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTS-----------EGWKVCSFYNM--DSIPAVLVIDPI 205 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~-----------eg~~~~~~Y~~--~~~P~i~IIdpr 205 (305)
||+|..+||..|+.. .+.++++-++ .|.++.++.|.. .+..+..+|++ ..+|+..|||+.
T Consensus 73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 788999999999998 6778888776 688888877733 23446678884 699999999974
Q ss_pred CCeeE-EEecCCCChHHHHHHHHHHHhh
Q 021955 206 TGQKI-CSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 206 TGe~~-~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
|+.+ .++.|.++.+++.+.+.+.+..
T Consensus 147 -G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 147 -TLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -CcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 6664 5788999999998888888764
No 82
>PTZ00102 disulphide isomerase; Provisional
Probab=97.58 E-value=0.00034 Score=69.45 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCce
Q 021955 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~ 198 (305)
-..+|+++. .+.+|.+||+++++||..|+.|.. +|. .+.+..+ .+++|..++.+..+ ..+..|++..+|+
T Consensus 363 ~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt 434 (477)
T PTZ00102 363 VGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPT 434 (477)
T ss_pred cccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCe
Confidence 345566553 467899999999999999999943 332 2222233 35778877765433 4577889999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 199 i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
+.++++ .|+....+.|..+.+.+.+.|.+.+..
T Consensus 435 ~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999986 344445689999888777666665543
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.57 E-value=0.00018 Score=61.69 Aligned_cols=79 Identities=10% Similarity=0.180 Sum_probs=51.0
Q ss_pred HHcCCeEEEEeecCCCccchhhhhcc------C--------------------CC-HHHHHHhhccEEEE-EecCCChhH
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDT------W--------------------GN-EAVSQIISVNFIFW-QEYDDTSEG 184 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDv------w--------------------~n-~~V~~~i~~nFIfw-q~~~ds~eg 184 (305)
.=++|+++||+.++||.+|..+.-.+ + .+ +.+++|++++=+-| .+......+
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 34689999999999999999863221 0 11 23455555442111 111122223
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 185 WKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
..+...|++..+|+..|||+ .|+.+..
T Consensus 102 ~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred HHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 46777888999999999998 5887766
No 84
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.57 E-value=0.0011 Score=59.37 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc--EEEEEecCCChhHHHHHHhcCCCCCceEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n--FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~ 200 (305)
.+|.+....|. .++|++|.|+.+||.+|+.| ++.+.++..++ .-|..++++. .+..|++...|+|+
T Consensus 90 ~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m------~~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTll 157 (192)
T cd02988 90 PDYVREVTEAS-KDTWVVVHLYKDGIPLCRLL------NQHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHhcC-CCCEEEEEEECCCCchHHHH------HHHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEE
Confidence 34544443322 34699999999999999999 55666666543 4677777653 36789999999999
Q ss_pred EEeCCCCeeEEEecCC
Q 021955 201 VIDPITGQKICSWCGM 216 (305)
Q Consensus 201 IIdprTGe~~~~~~G~ 216 (305)
|.- .|+.+..+.|+
T Consensus 158 iyk--~G~~v~~ivG~ 171 (192)
T cd02988 158 VYR--NGDIVKQFIGL 171 (192)
T ss_pred EEE--CCEEEEEEeCc
Confidence 997 59998887764
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.55 E-value=0.00033 Score=57.95 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh---hc---cEEEEEecCCCh-------------------
Q 021955 128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SV---NFIFWQEYDDTS------------------- 182 (305)
Q Consensus 128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i---~~---nFIfwq~~~ds~------------------- 182 (305)
-+..+.-++|.+||++..+||.+|+.+- +.+.++. ++ ++.++.++.+..
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPF 82 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeecc
Confidence 3444555689999999999999999873 3333332 22 344444443321
Q ss_pred ----hHHHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 183 ----EGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 183 ----eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
....+.+.|++..+|++.|||+ .|+.+..
T Consensus 83 ~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 83 EDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred CcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 2345677899999999999997 5876644
No 86
>PLN02309 5'-adenylylsulfate reductase
Probab=97.52 E-value=0.0006 Score=68.57 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=72.8
Q ss_pred hhhhCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh-hccEEEEEecCCChhHHHH
Q 021955 110 ASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKV 187 (305)
Q Consensus 110 a~lFrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i-~~nFIfwq~~~ds~eg~~~ 187 (305)
.++|.-+..+ +-..+|++.+. .+..+|.+||+++.+||..|+.|...+ +.+.+-+ ..++.|..++.+..+ ..+
T Consensus 339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~~---e~LA~~~~~~~V~f~kVD~d~~~-~~l 413 (457)
T PLN02309 339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEASY---EELAEKLAGSGVKVAKFRADGDQ-KEF 413 (457)
T ss_pred ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCeEEEEEECCCcc-hHH
Confidence 5666433322 22334544333 357899999999999999999996542 2333333 345999999888333 355
Q ss_pred HH-hcCCCCCceEEEEeCCCCeeEEEecC-CCChHHHHHHHH
Q 021955 188 CS-FYNMDSIPAVLVIDPITGQKICSWCG-MINPQPLGEMLL 227 (305)
Q Consensus 188 ~~-~Y~~~~~P~i~IIdprTGe~~~~~~G-~~~~~~~l~~L~ 227 (305)
++ .|++..||+|.+..+.+ .....+.| .-+.+.|+.-+.
T Consensus 414 a~~~~~I~~~PTil~f~~g~-~~~v~Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 414 AKQELQLGSFPTILLFPKNS-SRPIKYPSEKRDVDSLLSFVN 454 (457)
T ss_pred HHhhCCCceeeEEEEEeCCC-CCeeecCCCCcCHHHHHHHHH
Confidence 65 69999999999997632 23444654 567777665544
No 87
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.49 E-value=0.00093 Score=62.14 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCCh---h------HHHHHHhcCCCCCceEEEEeCC
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---E------GWKVCSFYNMDSIPAVLVIDPI 205 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~---e------g~~~~~~Y~~~~~P~i~IIdpr 205 (305)
++|=||+++...|.-|+.+ .+-|+.|-+.+ |-.+.++.|.. + ....++..++..+|.+.+|+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 5799999999999999999 79999999875 88888888751 1 1123367888999999999999
Q ss_pred CCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021955 206 TGQKICSWCGMINPQPLGEMLLPFMDRSP 234 (305)
Q Consensus 206 TGe~~~~~~G~~~~~~~l~~L~~fl~~~~ 234 (305)
||+..-+-.|.++.+++.+++......+.
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 99988888899999999999998887764
No 88
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.49 E-value=0.0014 Score=61.32 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCCh--hH-------HHHHHhcCCCCCceEEEEeCC
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS--EG-------WKVCSFYNMDSIPAVLVIDPI 205 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~--eg-------~~~~~~Y~~~~~P~i~IIdpr 205 (305)
++|=||+++...|.-|+.+ .+.|+.|-+++ |-...+++|.. .+ ...++.+++..+|.+.+|+|.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 5799999999999999999 78999999875 88888888854 11 345778889999999999999
Q ss_pred CCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021955 206 TGQKICSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 206 TGe~~~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
|++..-+-.|.++.+++++++...+..|
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9988777889999999999999998877
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.49 E-value=0.00057 Score=75.21 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=69.6
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc----cEEEEEecC---CC---h-------------------hHH
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYD---DT---S-------------------EGW 185 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~----nFIfwq~~~---ds---~-------------------eg~ 185 (305)
.+|++|||+..+||.+|+.. .|.+.++-++ +|+++.+.. |. . ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e------~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHV------LPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhH------hHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 58999999999999999987 4555544443 377776642 11 0 122
Q ss_pred HHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021955 186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP 234 (305)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~ 234 (305)
.+...|++..+|+++|||+ .|+.+.++.|....+++.+.|...+..|.
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~ 540 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYG 540 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhc
Confidence 4667888999999999997 59999999998888888887777776543
No 90
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.49 E-value=0.00023 Score=52.67 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=42.1
Q ss_pred CCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 3 SESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 3 ~~s~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
..+..+.++|..|+.. ||-+.+=++.+|+.+|||++.|+..|-+-.
T Consensus 7 ~~~~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 7 TLSPEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4567899999999999 999999999999999999999999998743
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.42 E-value=0.001 Score=59.92 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=65.6
Q ss_pred cCCeEEEEee--cCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeE
Q 021955 135 QDKWLLVNLQ--STKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI 210 (305)
Q Consensus 135 ~~KwLLVniq--~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~ 210 (305)
.++-|++... .+||.+|+.| .+.+.++..+ +.-+.-+++|..+...++..|++..+|+++|++. |+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~------~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKET------EQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHH------HHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Ceee
Confidence 3455555444 2899999999 4555555443 2334446677778999999999999999999984 7776
Q ss_pred E-EecCCCChHHHHHHHHHHHhh
Q 021955 211 C-SWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 211 ~-~~~G~~~~~~~l~~L~~fl~~ 232 (305)
. .+.|..+.+++.+.|...+..
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHHHh
Confidence 4 788988888877777766643
No 92
>PTZ00062 glutaredoxin; Provisional
Probab=97.40 E-value=0.0017 Score=58.80 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=64.2
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCC
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTG 207 (305)
+..+.....++++++++||.+|+.| ++.+.++..+ ++.|+.++.+ |.+...|+++++. .|
T Consensus 11 ~~i~~~~g~~vl~f~a~w~~~C~~m------~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~--~g 72 (204)
T PTZ00062 11 KLIESNTGKLVLYVKSSKEPEYEQL------MDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ--NS 72 (204)
T ss_pred HHHhcCCCcEEEEEeCCCCcchHHH------HHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE--CC
Confidence 3334334779999999999999999 5666777765 6899999877 9999999999997 59
Q ss_pred eeEEEecCCCChHHHHHHHHHHHh
Q 021955 208 QKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 208 e~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
+.+.++.|. +|.++...|.....
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcC
Confidence 999998884 46666655555443
No 93
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.37 E-value=0.0017 Score=56.03 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=67.2
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh---------hH------------------HHH
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS---------EG------------------WKV 187 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~---------eg------------------~~~ 187 (305)
.+||+||++..+||..|...-+.+ ++...+|-+.++.|+.++.+.. +- ..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 689999999999999997543322 2223333335688888876541 11 234
Q ss_pred HHhcCCCCCceEEEEeCCCCeeEEEe------c---CCCChHHHHHHHHHHHhhCCCC
Q 021955 188 CSFYNMDSIPAVLVIDPITGQKICSW------C---GMINPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 188 ~~~Y~~~~~P~i~IIdprTGe~~~~~------~---G~~~~~~~l~~L~~fl~~~~~~ 236 (305)
++.|++...|++.|||+ +|+.+..+ . +..+.+++.+.|...+...+..
T Consensus 102 ~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 102 AKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 55667778899999998 68877663 1 1246688888888888876554
No 94
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.35 E-value=0.0019 Score=57.85 Aligned_cols=92 Identities=9% Similarity=0.120 Sum_probs=60.8
Q ss_pred HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh----hccEEEEEecC--------CC-hhHHHHHHhcCC-------
Q 021955 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII----SVNFIFWQEYD--------DT-SEGWKVCSFYNM------- 193 (305)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i----~~nFIfwq~~~--------ds-~eg~~~~~~Y~~------- 193 (305)
-.+|++||++..+||.+|..-- +.+.++. ..+|.++.++. ++ .+..++++.|++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeee
Confidence 3589999999999999997532 2222222 23477777653 22 235555554442
Q ss_pred -----------------------------CCCc---eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 194 -----------------------------DSIP---AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 194 -----------------------------~~~P---~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
..+| +..|||+ .|+.+..+.|..+++++...|...|.+
T Consensus 111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1122 4678885 799999999988888888777777653
No 95
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.29 E-value=0.0022 Score=58.32 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=73.2
Q ss_pred HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCCh---------hHHHHHHhcCCCCCceEEEEe
Q 021955 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~---------eg~~~~~~Y~~~~~P~i~IId 203 (305)
-.++|=||++...+|.-|+.+ .+-|+.|.+++ |-...++.|.. .....++.+++..+|.+.+|+
T Consensus 118 la~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 347999999999999999999 78889998875 87888888742 124467788999999999999
Q ss_pred CCCCeeEEEecCCCChHHHHHHH
Q 021955 204 PITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 204 prTGe~~~~~~G~~~~~~~l~~L 226 (305)
|.|++.+-+-.|.++.+++++++
T Consensus 192 ~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 192 PNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCCeEEEEeeecCCHHHHHHhh
Confidence 99888888888999999998875
No 96
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.26 E-value=0.0013 Score=50.78 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=43.3
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCC-----------------------hhHHHHHHh
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDT-----------------------SEGWKVCSF 190 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds-----------------------~eg~~~~~~ 190 (305)
||+++|++.++||.+|...-..+ . .+.+-++ .+|.|..++.|. .....+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l--~-~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL--K-ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH--H-HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH--H-HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 68999999999999998874333 1 1222222 344444444332 234467778
Q ss_pred cCCCCCceEEEEeCCCCe
Q 021955 191 YNMDSIPAVLVIDPITGQ 208 (305)
Q Consensus 191 Y~~~~~P~i~IIdprTGe 208 (305)
|.+..+|+++|||+ .|+
T Consensus 78 ~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 78 YGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp TT-TSSSEEEEEET-TSB
T ss_pred CCCCcCCEEEEECC-CCC
Confidence 88999999999997 565
No 97
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.22 E-value=0.003 Score=55.88 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=56.0
Q ss_pred HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCCh------------------hHHHHHHhcC
Q 021955 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTS------------------EGWKVCSFYN 192 (305)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~------------------eg~~~~~~Y~ 192 (305)
..+|+++|++.++||..|+..- +.+.++.++ ++|+.. .++. ....+...|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 3589999999999999998763 233333222 233332 1211 1235666788
Q ss_pred CCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 193 ~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
+...|+..|||+ .|+.+.. |.+...+-++.|.+.++.
T Consensus 144 v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 144 VGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred CCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 889999999997 5876653 555555556666665544
No 98
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.21 E-value=0.0027 Score=52.20 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=55.4
Q ss_pred cCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh-H------------------HHHHHhcCCC
Q 021955 135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-G------------------WKVCSFYNMD 194 (305)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e-g------------------~~~~~~Y~~~ 194 (305)
.+|++||++. ..||..|...-+.+ ++...++-..++.++.+..++++ . ..+...|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4899999998 57899897654332 22223333334555555544432 1 2345556665
Q ss_pred CC---------ceEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021955 195 SI---------PAVLVIDPITGQKICSWCGMINPQPLGEM 225 (305)
Q Consensus 195 ~~---------P~i~IIdprTGe~~~~~~G~~~~~~~l~~ 225 (305)
.+ |++.|||+ +|+.+..|.|......+-+.
T Consensus 100 ~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHH
Confidence 55 89999997 69999999998755554443
No 99
>PHA02125 thioredoxin-like protein
Probab=97.20 E-value=0.0019 Score=48.49 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=50.9
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCC-C
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI-N 218 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~-~ 218 (305)
+|+++.+||.+|+.+.+-+ .++ .|.+..++ ..+...++..|++..+|++. .|+.+..+.|.. +
T Consensus 2 iv~f~a~wC~~Ck~~~~~l------~~~---~~~~~~vd--~~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPML------ANV---EYTYVDVD--TDEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHH------HHH---hheEEeee--CCCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCCc
Confidence 7899999999999996642 221 25555554 44567899999999999986 378777788863 4
Q ss_pred hHHHHHHH
Q 021955 219 PQPLGEML 226 (305)
Q Consensus 219 ~~~~l~~L 226 (305)
..++.+.|
T Consensus 66 ~~~l~~~~ 73 (75)
T PHA02125 66 VAELKEKL 73 (75)
T ss_pred HHHHHHHh
Confidence 45555554
No 100
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.17 E-value=0.004 Score=57.49 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 195 ~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
..|+..|||+ .|+.++++.|.++++++...|.+.|.
T Consensus 200 ~~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 200 WNFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cCceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 3589999996 69999999999999988888877663
No 101
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.13 E-value=0.0041 Score=51.45 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=64.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeec--CCCc---cchhhhhccCCCHHHHHHhhccEEEEEecCCC---hhHHHHHHhcCC
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQS--TKEF---SSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---SEGWKVCSFYNM 193 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~--~~~f---~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds---~eg~~~~~~Y~~ 193 (305)
..+|++++ ++++.+||-++. +||. .|..|-. +...-- ...++-+++.+. .+...+++.|++
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~------e~~~aa-~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAE------SSASAT-DDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHH------HHHhhc-CceEEEEEecccccchhhHHHHHHhCC
Confidence 34566644 678999999999 7777 6666632 111111 248888998875 566889999999
Q ss_pred C--CCceEEEEeCCCCe--eEEEecCC-CChHHHHHHH
Q 021955 194 D--SIPAVLVIDPITGQ--KICSWCGM-INPQPLGEML 226 (305)
Q Consensus 194 ~--~~P~i~IIdprTGe--~~~~~~G~-~~~~~~l~~L 226 (305)
. .||+|.+... |. ....+.|. .+.+.++.-|
T Consensus 77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v 112 (116)
T cd03007 77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFL 112 (116)
T ss_pred CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHH
Confidence 8 9999999984 43 34568886 8888766543
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.09 E-value=0.0026 Score=52.02 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC------Chh-H------------------HH
Q 021955 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD------TSE-G------------------WK 186 (305)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d------s~e-g------------------~~ 186 (305)
+.-.+|+++|++.++||..|+..-..+ ++...+|-..++.++.+..+ +.+ . ..
T Consensus 19 ~~~~gk~vvl~F~a~~C~~C~~~~p~l--~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~ 96 (126)
T cd03012 19 AQLRGKVVLLDFWTYCCINCLHTLPYL--TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYA 96 (126)
T ss_pred HHhCCCEEEEEEECCCCccHHHHHHHH--HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchH
Confidence 344689999999999999998763332 22222222234666665431 121 1 23
Q ss_pred HHHhcCCCCCceEEEEeCCCCeeEEEecC
Q 021955 187 VCSFYNMDSIPAVLVIDPITGQKICSWCG 215 (305)
Q Consensus 187 ~~~~Y~~~~~P~i~IIdprTGe~~~~~~G 215 (305)
+...|.+..+|+..|||+ .|+.+..+.|
T Consensus 97 ~~~~~~v~~~P~~~vid~-~G~v~~~~~G 124 (126)
T cd03012 97 TWRAYGNQYWPALYLIDP-TGNVRHVHFG 124 (126)
T ss_pred HHHHhCCCcCCeEEEECC-CCcEEEEEec
Confidence 444567788999999997 5998888776
No 103
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0032 Score=58.48 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCC
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTG 207 (305)
+.++.-.|.++|++...||.+|++. .|.+.++-+. .+||+.+|+| +-+.-+..|.+.+.|++++.- +|
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd--~c~~taa~~gV~amPTFiff~--ng 84 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVD--ECRGTAATNGVNAMPTFIFFR--NG 84 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHH--HhhchhhhcCcccCceEEEEe--cC
Confidence 3456678999999999999999999 7888888886 5999999766 445577889999999998886 58
Q ss_pred eeEEEecCCCChHHHHHHHHHHHhh
Q 021955 208 QKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 208 e~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
.++.++.|. ++..+-+.+.++++.
T Consensus 85 ~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 85 VKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred eEeeeecCC-CHHHHHHHHHHHhcc
Confidence 999888884 566677777777764
No 104
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.08 E-value=0.0041 Score=46.36 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=53.9
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHh---hccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCC
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i---~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~ 217 (305)
+-++.+||..|+.+. +.+.++. +.++-+..++.+ +....++.|++..+|++.| + |+ ..+.|..
T Consensus 4 ~~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~-~---g~--~~~~G~~ 69 (82)
T TIGR00411 4 ELFTSPTCPYCPAAK------RVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI-N---GD--VEFIGAP 69 (82)
T ss_pred EEEECCCCcchHHHH------HHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE-C---CE--EEEecCC
Confidence 345678999999994 4444443 334667777765 3446778899999999975 3 54 2678988
Q ss_pred ChHHHHHHHHHH
Q 021955 218 NPQPLGEMLLPF 229 (305)
Q Consensus 218 ~~~~~l~~L~~f 229 (305)
+++++.+.|...
T Consensus 70 ~~~~l~~~l~~~ 81 (82)
T TIGR00411 70 TKEELVEAIKKR 81 (82)
T ss_pred CHHHHHHHHHhh
Confidence 999888777654
No 105
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.03 E-value=0.00045 Score=48.96 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=36.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 50 (305)
+++|.+|+.. ||-+.+=|+++|+.++||++.|+..|.....
T Consensus 1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4789999999 9999999999999999999999999998654
No 106
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0044 Score=58.84 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh---ccEEEEEecCCChhHHHHHHhcCCCCCceE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~---~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
-+|++.+.++. ..+++||+|..+||.+|..|- +.+-.+.. ..|++-.+|.|.. ..++..+++.+.|++
T Consensus 31 anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~------p~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV 101 (304)
T COG3118 31 ANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLT------PTLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTV 101 (304)
T ss_pred hHHHHHHHHHc-cCCCeEEEecCCCCchHHHHH------HHHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeE
Confidence 34666666543 357999999999999999994 44555554 5699999987764 458889999999998
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
..+- .|+-|-.+.|...-+.+-+.|..++-
T Consensus 102 ~af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 102 YAFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 8876 48888888887765555444444443
No 107
>PLN02412 probable glutathione peroxidase
Probab=97.01 E-value=0.003 Score=54.82 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=61.0
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC--------h-hHHHH-HHhcC------------
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-EGWKV-CSFYN------------ 192 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds--------~-eg~~~-~~~Y~------------ 192 (305)
.+|.+||++..+||.+|..--..+ ++.-.+|=..+|.++.++.++ . +-.++ ++.|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 479999999999999998532221 222333333456666665431 1 11121 22211
Q ss_pred ----------------------CCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 193 ----------------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 193 ----------------------~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
+...|+..|||+ .|+.++.|.|.++++++...|...|..
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 222588899997 699999999999999888888777653
No 108
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.95 E-value=0.0066 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHH
Q 021955 198 AVLVIDPITGQKICSWCGMINPQPLGE 224 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~~G~~~~~~~l~ 224 (305)
+..|||+ .|+.+++|.|.++++++..
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence 6899996 6999999999988876543
No 109
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.94 E-value=0.005 Score=48.87 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=43.4
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC-hhHHHHHH-----------------hcCCCCC
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWKVCS-----------------FYNMDSI 196 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds-~eg~~~~~-----------------~Y~~~~~ 196 (305)
++|+++|++.++||..|+.....+ ..+.+.....+.++.+..++ .+..++++ .|.+...
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 589999999999999999885332 11222223345444443222 23334444 4455667
Q ss_pred ceEEEEeCCCCeeE
Q 021955 197 PAVLVIDPITGQKI 210 (305)
Q Consensus 197 P~i~IIdprTGe~~ 210 (305)
|+..|||+ .|+.+
T Consensus 97 P~~~vid~-~G~v~ 109 (114)
T cd02967 97 PYAVLLDE-AGVIA 109 (114)
T ss_pred CeEEEECC-CCeEE
Confidence 88888885 46654
No 110
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.92 E-value=0.0038 Score=61.22 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCc
Q 021955 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P 197 (305)
...+|.+.. ...+|.+||+++.+||..|+.|...+ ..+.+.++. ++.|..++.+..+. .. |.+..+|
T Consensus 352 ~~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~~---~~-~~i~~~P 421 (462)
T TIGR01130 352 VGKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATANDV---PP-FEVEGFP 421 (462)
T ss_pred eCcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCcc---CC-CCccccC
Confidence 345676654 45689999999999999999996543 445555665 78899998876553 33 8899999
Q ss_pred eEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHhhCC
Q 021955 198 AVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMDRSP 234 (305)
Q Consensus 198 ~i~IIdprTGe~--~~~~~G~~~~~~~l~~L~~fl~~~~ 234 (305)
++.+... |.+ ...+.|..+.+.++ .||+++.
T Consensus 422 t~~~~~~--~~~~~~~~~~g~~~~~~l~----~~l~~~~ 454 (462)
T TIGR01130 422 TIKFVPA--GKKSEPVPYDGDRTLEDFS----KFIAKHA 454 (462)
T ss_pred EEEEEeC--CCCcCceEecCcCCHHHHH----HHHHhcC
Confidence 9999974 333 34577877766644 5555443
No 111
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.72 E-value=0.008 Score=52.04 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=59.9
Q ss_pred HcCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH--------------------------HH
Q 021955 134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WK 186 (305)
Q Consensus 134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg--------------------------~~ 186 (305)
-.+||+||++. ..||..|..-.+.+ +....+|-+.++.++.++.|..+. ..
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 104 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK 104 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence 35899999999 68999999865544 334445555567777777665421 12
Q ss_pred HHHhcCCC------CCceEEEEeCCCCeeEEEecCCC----ChHHHHHHHHH
Q 021955 187 VCSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLP 228 (305)
Q Consensus 187 ~~~~Y~~~------~~P~i~IIdprTGe~~~~~~G~~----~~~~~l~~L~~ 228 (305)
+++.|.+. ..|+++|||+ .|..+..+.+.. +.++++..|..
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 33345543 4689999997 598888875532 44555555543
No 112
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.70 E-value=0.0088 Score=45.13 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCC
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~ 217 (305)
|.|+++||..|+.+ .+.+.+++.+. +.|..++ +.+ -+..|++...|+|+| .|+.+ +.|..
T Consensus 3 i~~~a~~C~~C~~~------~~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~ 65 (76)
T TIGR00412 3 IQIYGTGCANCQMT------EKNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI 65 (76)
T ss_pred EEEECCCCcCHHHH------HHHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence 77889999999999 56777777753 6676554 222 256799999999998 47766 77753
Q ss_pred -ChHHHHHHH
Q 021955 218 -NPQPLGEML 226 (305)
Q Consensus 218 -~~~~~l~~L 226 (305)
+.+++.+.|
T Consensus 66 ~~~~~l~~~l 75 (76)
T TIGR00412 66 PSKEEIKEIL 75 (76)
T ss_pred CCHHHHHHHh
Confidence 445555443
No 113
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.68 E-value=0.021 Score=48.15 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=53.9
Q ss_pred cCCeEEEEeecC-CCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------HHHHHhcCCC
Q 021955 135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------WKVCSFYNMD 194 (305)
Q Consensus 135 ~~KwLLVniq~~-~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------~~~~~~Y~~~ 194 (305)
.+|.+||++... +|..|....+.+ +....++-++++.++.++.|+++. ..+++.|.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 468888888865 577786543222 223333333445555555554321 2244455542
Q ss_pred C------------CceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 195 S------------IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 195 ~------------~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
. .|+..|||+ .|..++.|.|+... +.++.+..++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~-~~~~~~~~~~~ 153 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTS-NHHDVVLDYLK 153 (154)
T ss_pred cccccccccccCcceEEEEECC-CCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence 2 277889997 59999999997544 34666665554
No 114
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.67 E-value=0.02 Score=48.48 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=58.2
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhcc--------------C-------------CCHHHHHHhhc----cEEEEE-ec
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDT--------------W-------------GNEAVSQIISV----NFIFWQ-EY 178 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDv--------------w-------------~n~~V~~~i~~----nFIfwq-~~ 178 (305)
.+.-.+|++||++..+||..|..--.++ + +.+.+++|+++ +|-++. .+
T Consensus 17 l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~ 96 (153)
T TIGR02540 17 LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIK 96 (153)
T ss_pred HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEe
Confidence 3445689999999999999996522110 0 01346666643 122221 00
Q ss_pred C---CChhHHHHHHhcCCCCCce----EEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021955 179 D---DTSEGWKVCSFYNMDSIPA----VLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 179 ~---ds~eg~~~~~~Y~~~~~P~----i~IIdprTGe~~~~~~G~~~~~~~l~~L~~f 229 (305)
+ +...+..+.. .+...+|. ..|||+ .|+.+..|.|.++++++...|...
T Consensus 97 ~~~~~~~~~~~~~~-~~~~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 97 ILGSEAEPAFRFLV-DSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred cCCCCCCcHHHHHH-hcCCCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 0 1111122211 12235787 899996 799999999999999887777654
No 115
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.66 E-value=0.0089 Score=52.76 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=64.2
Q ss_pred HcCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-----------------------HHHHH
Q 021955 134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------WKVCS 189 (305)
Q Consensus 134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-----------------------~~~~~ 189 (305)
-.+||++|+++ ..||+.|..--..+ ++...+|-+.++.++.++.|+++. ..+++
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 35899999999 89999998754443 344455555677777777776432 13445
Q ss_pred hcCCC------CCceEEEEeCCCCeeEEEecCC----CChHHHHHHH--HHHHhhC
Q 021955 190 FYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEML--LPFMDRS 233 (305)
Q Consensus 190 ~Y~~~------~~P~i~IIdprTGe~~~~~~G~----~~~~~~l~~L--~~fl~~~ 233 (305)
.|.+. ..|+..|||+ .|.....|.+. ...++++..| .+|++++
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc
Confidence 56653 3599999997 59988876432 2566777665 3345544
No 116
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.59 E-value=0.0046 Score=40.50 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.1
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021955 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (305)
Q Consensus 8 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ 44 (305)
.+++|.+.+++ |-+.+.|++.|.+++||++.|++.
T Consensus 2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 36789999999 999999999999999999999974
No 117
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.54 E-value=0.0063 Score=39.75 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.7
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff 46 (305)
++.|.+++++ |-+.+.|+.-|+.++||++.|++..|
T Consensus 2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4688999998 89999999999999999999998766
No 118
>PRK15000 peroxidase; Provisional
Probab=96.47 E-value=0.017 Score=51.75 Aligned_cols=91 Identities=10% Similarity=-0.012 Sum_probs=64.4
Q ss_pred cCCeEEEEeecC-CCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHH--------------------------HH
Q 021955 135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV 187 (305)
Q Consensus 135 ~~KwLLVniq~~-~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~--------------------------~~ 187 (305)
.+||++|+++.. +|+.|..--..+ +....+|-+.++.++.++.|+.+.. .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 689999999995 899998754443 4555566667888888888865422 33
Q ss_pred HHhcCCC------CCceEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021955 188 CSFYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (305)
Q Consensus 188 ~~~Y~~~------~~P~i~IIdprTGe~~~~~~G~----~~~~~~l~~L~~ 228 (305)
++.|++. .+|...|||| .|.....+.|. .+.++++..|..
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4456654 5899999998 58887776553 266777766654
No 119
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.47 E-value=0.0064 Score=39.50 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff 46 (305)
.+.|.+++++ |-+.+.|++-|+.++||++.|++-.|
T Consensus 2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999 89999999999999999999987643
No 120
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.46 E-value=0.035 Score=49.39 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=71.1
Q ss_pred CCcccc--ccccHHHHHHHHHHcCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------
Q 021955 115 PPFHVM--FNGSFEKAKDAALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG------- 184 (305)
Q Consensus 115 PP~~l~--~~gsf~~A~~~Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg------- 184 (305)
|+|... +.|++..... +.-.+||++|+++ ..||+.|..--..+ ++...+|-+.++.++.++.|++..
T Consensus 9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~ 85 (187)
T PRK10382 9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 85 (187)
T ss_pred CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHh
Confidence 555542 2355533322 2236899999999 88999998744333 445555666677888888777533
Q ss_pred ----------------HHHHHhcCC----CCC--ceEEEEeCCCCeeEEEecC----CCChHHHHHHHHH
Q 021955 185 ----------------WKVCSFYNM----DSI--PAVLVIDPITGQKICSWCG----MINPQPLGEMLLP 228 (305)
Q Consensus 185 ----------------~~~~~~Y~~----~~~--P~i~IIdprTGe~~~~~~G----~~~~~~~l~~L~~ 228 (305)
..+++.|.+ ..+ |...|||| .|.....+.. ..+.+++++.|..
T Consensus 86 ~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 86 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred hccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 245667776 234 99999998 5887777532 1367777776643
No 121
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.35 E-value=0.018 Score=47.81 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=51.9
Q ss_pred HcCCeEEEEeecC-CCccchhhhhccCCCHHHHHH----hhccEEEEEecCCCh-------------------hHHHHHH
Q 021955 134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQI----ISVNFIFWQEYDDTS-------------------EGWKVCS 189 (305)
Q Consensus 134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~n~~V~~~----i~~nFIfwq~~~ds~-------------------eg~~~~~ 189 (305)
-.+|+++|++..+ ||.+|+.--. .+.++ -..++.+..+..+.. ....+.+
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p------~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELP------YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhh------hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 4689999999999 9999986532 22222 223344444433321 2234555
Q ss_pred hcCCC---------CCceEEEEeCCCCeeEEEecCCCC
Q 021955 190 FYNMD---------SIPAVLVIDPITGQKICSWCGMIN 218 (305)
Q Consensus 190 ~Y~~~---------~~P~i~IIdprTGe~~~~~~G~~~ 218 (305)
.|.+. .+|+++|||+ .|+.+....|...
T Consensus 100 ~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 100 ALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp HTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred HhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 66766 8999999996 7998888877654
No 122
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.35 E-value=0.023 Score=49.38 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCCh---------------------
Q 021955 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTS--------------------- 182 (305)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~--------------------- 182 (305)
.......=++|-|.+|+...||.+|+.| ||.=..|-+-|+++ |-..-++.|..
T Consensus 24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~ 100 (157)
T KOG2501|consen 24 EVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFG 100 (157)
T ss_pred cchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCC
Confidence 3444445578999999999999999998 45555556666677 64444444432
Q ss_pred --hHHHHHHhcCCCCCceEEEEeCCCCeeEEE
Q 021955 183 --EGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (305)
Q Consensus 183 --eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~ 212 (305)
--+++..+|.+...|.+.||.| .|..+..
T Consensus 101 d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v~~ 131 (157)
T KOG2501|consen 101 DDLIQKLSEKYEVKGIPALVILKP-DGTVVTE 131 (157)
T ss_pred CHHHHHHHHhcccCcCceeEEecC-CCCEehH
Confidence 1235666899999999999998 6876654
No 123
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=96.30 E-value=0.0062 Score=61.90 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC-hhHHH-HHH----hcCCCCCceE
Q 021955 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWK-VCS----FYNMDSIPAV 199 (305)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds-~eg~~-~~~----~Y~~~~~P~i 199 (305)
++|.++|+.++|+|++.+--+.|..|++|.+.-|-|++..+++++|||-..+|-+. |+--+ |++ .+.-...|.-
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms 181 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS 181 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence 78999999999999999999999999999999999999999999999988876443 33222 333 3334779999
Q ss_pred EEEeCC
Q 021955 200 LVIDPI 205 (305)
Q Consensus 200 ~IIdpr 205 (305)
+.|.|.
T Consensus 182 V~LTPd 187 (786)
T KOG2244|consen 182 VFLTPD 187 (786)
T ss_pred EEeCCC
Confidence 999873
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.23 E-value=0.016 Score=46.30 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=50.4
Q ss_pred cCCeEEEEeecC-CCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh-HH------------------HHHHhcCCC
Q 021955 135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-GW------------------KVCSFYNMD 194 (305)
Q Consensus 135 ~~KwLLVniq~~-~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e-g~------------------~~~~~Y~~~ 194 (305)
.+||+||++... ||..|+.....+ ++...+|=..++-++.+..+..+ -. .+++.|.+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l--~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPEL--NELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHH--HHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 579999999998 999998775443 33333333446777777777764 22 344455555
Q ss_pred ------CCceEEEEeCCCCeeEE
Q 021955 195 ------SIPAVLVIDPITGQKIC 211 (305)
Q Consensus 195 ------~~P~i~IIdprTGe~~~ 211 (305)
.+|++.|||+ .|..+.
T Consensus 102 ~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp ETTTSEESEEEEEEET-TSBEEE
T ss_pred cccCCceEeEEEEECC-CCEEEe
Confidence 7899999997 466543
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.17 E-value=0.036 Score=49.90 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHcCCeEEEE-eecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCee
Q 021955 133 LAQDKWLLVN-LQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (305)
Q Consensus 133 k~~~KwLLVn-iq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (305)
+..++.+.|. +.++||..|..+. +.+.++..+ +..+..+|.+ +...++..|++.++|++.|.+ .|+.
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~--~~~~ 198 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK--GVEE 198 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--CCEE
Confidence 4456676666 7899999999885 445555544 3556655544 456788999999999999865 3543
Q ss_pred EEEecCCCChHHHHHHHH
Q 021955 210 ICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~~L~ 227 (305)
+.|....++|.+.|.
T Consensus 199 ---~~G~~~~~~l~~~l~ 213 (215)
T TIGR02187 199 ---FVGAYPEEQFLEYIL 213 (215)
T ss_pred ---EECCCCHHHHHHHHH
Confidence 778888888777665
No 126
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.97 E-value=0.044 Score=47.39 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=45.4
Q ss_pred cCCeEEEEeecCC-CccchhhhhccCCCHHHHHHhhccEEEEEecCCCh---------------------hHHHHHHhcC
Q 021955 135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS---------------------EGWKVCSFYN 192 (305)
Q Consensus 135 ~~KwLLVniq~~~-~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~---------------------eg~~~~~~Y~ 192 (305)
.+||++|+++..| |+.|..--+.+ ++...++ .++.++.++.|++ .+..+++.|+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l--~~~~~~~--~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKF--NQEAAEL--DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHH--HHHHHHc--CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 5899999999998 89998742221 1111111 2456666655543 2234455555
Q ss_pred CCCCc---------eEEEEeCCCCeeEEEec
Q 021955 193 MDSIP---------AVLVIDPITGQKICSWC 214 (305)
Q Consensus 193 ~~~~P---------~i~IIdprTGe~~~~~~ 214 (305)
+...| +..|||+ +|..+..|.
T Consensus 119 v~~~~~~~~g~~~r~tfvId~-~G~I~~~~~ 148 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDE-NNKVVYSEL 148 (167)
T ss_pred CeecccccCCceeeEEEEECC-CCeEEEEEE
Confidence 54445 7788885 688777764
No 127
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0011 Score=63.92 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=71.4
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC-----C-hhHHHHHHhcCCC--CCceEEEE
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD-----T-SEGWKVCSFYNMD--SIPAVLVI 202 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d-----s-~eg~~~~~~Y~~~--~~P~i~II 202 (305)
.++-..+|+.|.++.+-++.|++|++..|..+.++.++.+++.+|+++.. + -++++.+.+|... ..++..|+
T Consensus 6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~ 85 (356)
T KOG1364|consen 6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSIL 85 (356)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCccccc
Confidence 45567899999999988999999999999999999999999999999884 3 3566777777765 89999999
Q ss_pred eCCCCeeEEEec
Q 021955 203 DPITGQKICSWC 214 (305)
Q Consensus 203 dprTGe~~~~~~ 214 (305)
+|++|..-..|.
T Consensus 86 ~p~~~~~~~s~~ 97 (356)
T KOG1364|consen 86 DPSENQDDESEH 97 (356)
T ss_pred Ccccccchhhhh
Confidence 999987655543
No 128
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.89 E-value=0.051 Score=48.35 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=59.1
Q ss_pred cCCeEEEEeec-CCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh--------------------------HHHH
Q 021955 135 QDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV 187 (305)
Q Consensus 135 ~~KwLLVniq~-~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e--------------------------g~~~ 187 (305)
.+||++|+++. .+|+.|..--..+ +....+|-+.++-++.++.|+.+ ...+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 58999999995 6788887643322 44455565567777777777543 2246
Q ss_pred HHhcCCC------CCceEEEEeCCCCeeEEEecCCC----ChHHHHHHHH
Q 021955 188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLL 227 (305)
Q Consensus 188 ~~~Y~~~------~~P~i~IIdprTGe~~~~~~G~~----~~~~~l~~L~ 227 (305)
++.|++- .+|...|||| .|.....+.+.. +.++++..|.
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 6677762 4799999998 588777765533 3444444443
No 129
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.82 E-value=0.069 Score=45.17 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=50.8
Q ss_pred cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 171 NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 171 nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
.+.|..++.|. ...++..|++.++|+++++. .|+.+..+.|..+.+++++.|..++++
T Consensus 69 ~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 69 TWQVAIADLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ceEEEEEECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 36788776664 47899999999999999998 599999999999999999999999886
No 130
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.67 E-value=0.083 Score=49.56 Aligned_cols=92 Identities=11% Similarity=-0.029 Sum_probs=61.7
Q ss_pred cCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh--------------------------HHHH
Q 021955 135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV 187 (305)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e--------------------------g~~~ 187 (305)
.+||++++++ ..||+.|..--..+ ++...+|-+.++.++.++.|++. ...+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 5789999999 68999998743332 34444555556667777766642 1345
Q ss_pred HHhcCCC-----CCceEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021955 188 CSFYNMD-----SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF 229 (305)
Q Consensus 188 ~~~Y~~~-----~~P~i~IIdprTGe~~~~~~G----~~~~~~~l~~L~~f 229 (305)
++.|.+. ..|.+.|||| .|.....+.. ..+.++++..|..+
T Consensus 175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 6677763 5899999998 5888777521 23778877766543
No 131
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.39 E-value=0.17 Score=45.26 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=59.3
Q ss_pred HcCCeEEE-EeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------------HHH
Q 021955 134 AQDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKV 187 (305)
Q Consensus 134 ~~~KwLLV-niq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------------~~~ 187 (305)
-.+||++| ++-..||+.|..--..+ .+...+|-+.++.++.++.|+.+. ..+
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~i 102 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKEL 102 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHH
Confidence 36899877 56788999997543322 223334444566667766665321 245
Q ss_pred HHhcCCC------CCceEEEEeCCCCeeEEEe----cCCCChHHHHHHHHHHH
Q 021955 188 CSFYNMD------SIPAVLVIDPITGQKICSW----CGMINPQPLGEMLLPFM 230 (305)
Q Consensus 188 ~~~Y~~~------~~P~i~IIdprTGe~~~~~----~G~~~~~~~l~~L~~fl 230 (305)
++.|++. .+|++.|||| .|....++ .+..+.++++..|....
T Consensus 103 a~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 103 AREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5566652 4899999998 58766554 23357888887776554
No 132
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.084 Score=51.64 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=73.4
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeE
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI 210 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~ 210 (305)
.....++..+|.+.++||..|+.|-.... .+...++. +..-..+|-.+-..+++.|++..||++.+..+ |...
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~~ 114 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKKP 114 (383)
T ss_pred HhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCce
Confidence 34567889999999999999999954433 55555665 55556788899999999999999999999997 4455
Q ss_pred EEecCCCChHHHHHHHHHHHhh
Q 021955 211 CSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 211 ~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
....|..+.+.+.+-+...++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred eeccCcccHHHHHHHHHHhhcc
Confidence 6677777777777766666654
No 133
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.30 E-value=0.18 Score=39.33 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=52.6
Q ss_pred HHHHHcCCeE-EEEeecCCCccchhhhhccCCCHHHHHHhhc--cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCC
Q 021955 130 DAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT 206 (305)
Q Consensus 130 ~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~--nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprT 206 (305)
+.+++-++++ +.-+.++||..|..+.+ .+.++... ++-|..++.+ +-..++..|++.+.|+++| |
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~------~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi-d--- 72 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQ------ALNLMAVLNPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL-N--- 72 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHH------HHHHHHHHCCCceEEEEEhH--hCHHHHHHcCCccCCEEEE-C---
Confidence 3444555553 34445689999998743 33444333 4666666655 4457888999999999964 4
Q ss_pred CeeEEEecCCCChHHHHH
Q 021955 207 GQKICSWCGMINPQPLGE 224 (305)
Q Consensus 207 Ge~~~~~~G~~~~~~~l~ 224 (305)
|+.+. .|..+.+++++
T Consensus 73 G~~~~--~G~~~~~e~~~ 88 (89)
T cd03026 73 GELFG--FGRMTLEEILA 88 (89)
T ss_pred CEEEE--eCCCCHHHHhh
Confidence 77554 58777777654
No 134
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.21 E-value=0.2 Score=43.95 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCCce---EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 193 MDSIPA---VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 193 ~~~~P~---i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
+..+|+ ..|||+ .|..+..+.|.++++.+.+.|...|.
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 446785 589996 69999999999988888777776653
No 135
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.19 E-value=0.24 Score=44.18 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEE------EEecCCCh------------------------
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIF------WQEYDDTS------------------------ 182 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIf------wq~~~ds~------------------------ 182 (305)
.-.+|-.|||+...||.+|.+= .|.+..+=..+|-+ ..++.|..
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v 129 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXN------ASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQV 129 (184)
T ss_pred HcCCCEEEEEEEecCCChhhcc------chHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceE
Confidence 3449999999999999999653 44444444445555 55544431
Q ss_pred ----hHHHHHHhcCCCCCceE-EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021955 183 ----EGWKVCSFYNMDSIPAV-LVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (305)
Q Consensus 183 ----eg~~~~~~Y~~~~~P~i-~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl 230 (305)
+| .+...|.+..+|.. .|||+ .|+.+.+..|.++.+++-. +...+
T Consensus 130 llD~~g-~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~-~~~li 179 (184)
T TIGR01626 130 VLDDKG-AVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT-VISLV 179 (184)
T ss_pred EECCcc-hHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH-HHHHH
Confidence 11 23446777888877 89996 7999999999988876633 44444
No 136
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.065 Score=54.43 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCce
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~ 198 (305)
..+|++.+ ..+.++||-++.+||.-|+.|--.. ..-.+.+.+ .--+-++ |-++...+++.|.+..||+
T Consensus 32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakV--Dat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 32 KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKV--DATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEe--ecchhhhhHhhhcCCCCCe
Confidence 44565554 4589999999999999999994332 122334444 3445554 5555599999999999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 199 VLVIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 199 i~IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
+-|.- +|.....++|.-+++..+.-|.
T Consensus 103 lkiFr--nG~~~~~Y~G~r~adgIv~wl~ 129 (493)
T KOG0190|consen 103 LKIFR--NGRSAQDYNGPREADGIVKWLK 129 (493)
T ss_pred EEEEe--cCCcceeccCcccHHHHHHHHH
Confidence 99985 6887677888887777544443
No 137
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.92 E-value=0.18 Score=41.09 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=50.3
Q ss_pred cCCeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChh-HHHHHH-------------------hcCC
Q 021955 135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-GWKVCS-------------------FYNM 193 (305)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~e-g~~~~~-------------------~Y~~ 193 (305)
.+|+++|++. +.||..|...-+.+ +....+|=..++.|+.+..++++ ..++++ .|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 5888888888 77999998764443 23333332346667777666543 223333 3333
Q ss_pred CCC---------ceEEEEeCCCCeeEEEecCCC
Q 021955 194 DSI---------PAVLVIDPITGQKICSWCGMI 217 (305)
Q Consensus 194 ~~~---------P~i~IIdprTGe~~~~~~G~~ 217 (305)
... |++.|||+ +|+.+..|.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 333 47888996 688888887754
No 138
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.35 E-value=0.079 Score=50.74 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCeEEEEeecCCCccchhhhhccC-CCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEE-e
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTW-GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS-W 213 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw-~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~-~ 213 (305)
+..++|+++..||.-+|+|.--.- +...+++-.-++=|.|+ .+|..---.++++|.+..||++=|+- .|+++++ +
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rEY 89 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKREY 89 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhhh
Confidence 778999999999999999953221 11222222223457775 35555556789999999999999985 6999985 8
Q ss_pred cCCCChHHHHHHHHHHH
Q 021955 214 CGMINPQPLGEMLLPFM 230 (305)
Q Consensus 214 ~G~~~~~~~l~~L~~fl 230 (305)
.|..+++.+++-+..-+
T Consensus 90 Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQL 106 (375)
T ss_pred ccchhHHHHHHHHHHHh
Confidence 88888888776655544
No 139
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.25 E-value=0.16 Score=41.68 Aligned_cols=22 Identities=18% Similarity=-0.061 Sum_probs=18.5
Q ss_pred cCCeEEEEeecCCCcc-chhhhh
Q 021955 135 QDKWLLVNLQSTKEFS-SLMLNR 156 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~-c~~lnR 156 (305)
.+||++|++..+||.. |...-+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~ 43 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLA 43 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHH
Confidence 6899999999999997 976433
No 140
>PRK13189 peroxiredoxin; Provisional
Probab=94.24 E-value=0.23 Score=45.25 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=58.0
Q ss_pred cCCeEEE-EeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------------HHHH
Q 021955 135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC 188 (305)
Q Consensus 135 ~~KwLLV-niq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------------~~~~ 188 (305)
.+||++| ++-..||+.|..--..+ +....+|-+.|+.++.++.|+... ..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 5888876 55578999998643332 344455555666677776665431 2345
Q ss_pred HhcCCC-------CCceEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021955 189 SFYNMD-------SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF 229 (305)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~~~~~~G----~~~~~~~l~~L~~f 229 (305)
+.|.+. ..|.+.|||| .|.....+.+ ..+.++++..|..+
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 566652 5799999998 5887666432 23567777666543
No 141
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.23 E-value=0.29 Score=44.44 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=61.7
Q ss_pred cCCeEEE-EeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------------HHHH
Q 021955 135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC 188 (305)
Q Consensus 135 ~~KwLLV-niq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------------~~~~ 188 (305)
.+||++| ++-..||+.|..--..+ ++...+|-+.++.++.++.|+... ..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 5889887 66688999998765443 455566666778888888886543 1344
Q ss_pred HhcCCC-------CCceEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021955 189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (305)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~~~~~~G~----~~~~~~l~~L~~ 228 (305)
+.|.+- ..|.+.|||| .|.....+.+. .+.+++|..|..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 556641 3699999998 58876654322 367887777654
No 142
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.17 E-value=0.26 Score=40.69 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=48.9
Q ss_pred cCCeEEEEeecCC-CccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChh-H--------------------HHHHHh
Q 021955 135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE-G--------------------WKVCSF 190 (305)
Q Consensus 135 ~~KwLLVniq~~~-~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~e-g--------------------~~~~~~ 190 (305)
.+|+++|++...| |..|..--.. +.++.+ .++.++.++.|..+ . ..++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~------l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKR------FNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHH------HHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 5899999999988 6889775333 333333 26788888777543 1 234445
Q ss_pred cCCC------CCceEEEEeCCCCeeEEEecCC
Q 021955 191 YNMD------SIPAVLVIDPITGQKICSWCGM 216 (305)
Q Consensus 191 Y~~~------~~P~i~IIdprTGe~~~~~~G~ 216 (305)
|.+. ..|...|||+ .|..+..+.|.
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~ 129 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP 129 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence 5542 1578888886 58887777653
No 143
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.94 E-value=0.36 Score=43.11 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=54.5
Q ss_pred CeEEE-EeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------------HHHHHh
Q 021955 137 KWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVCSF 190 (305)
Q Consensus 137 KwLLV-niq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------------~~~~~~ 190 (305)
||++| ++-..||+.|..--..+ .....+|-+.++.++.++.|+.+. ..+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 78755 66678999998754333 333444545677778777776431 245556
Q ss_pred cCCC--------CCceEEEEeCCCCeeEEEecCC----CChHHHHHHHH
Q 021955 191 YNMD--------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLL 227 (305)
Q Consensus 191 Y~~~--------~~P~i~IIdprTGe~~~~~~G~----~~~~~~l~~L~ 227 (305)
|.+. ..|.+.|||| .|.....+.+. .+.++++..|.
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred cCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 6652 2456999998 58876666543 24556555553
No 144
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.89 E-value=0.28 Score=44.55 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=55.3
Q ss_pred cCCeE-EEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH-------------------------HHHH
Q 021955 135 QDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC 188 (305)
Q Consensus 135 ~~KwL-LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg-------------------------~~~~ 188 (305)
.+||+ |+++-..||+.|..--..+ ...-.+|-+.++.++.++.|+.+. ..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 57896 6677789999998643222 223334444556666666665422 2455
Q ss_pred HhcCCC-------CCceEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021955 189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (305)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~~~~~~G~----~~~~~~l~~L~~ 228 (305)
..|.+. ..|.+.|||| .|+....+... ...++++..|..
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 566652 5799999998 58876664211 356666665544
No 145
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.73 E-value=0.24 Score=35.55 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=37.4
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
++.+..+||..|+.+.+ .+.++.. .++-|..++.+.. ..++..|++.+.|+|+|
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ------AANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHH------HHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 34567789999998853 2333322 3577777776654 35788999999999865
No 146
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.70 E-value=0.36 Score=41.09 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred cCCe-EEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCC--CCceEEEEeCCCCeeEE
Q 021955 135 QDKW-LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKIC 211 (305)
Q Consensus 135 ~~Kw-LLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~--~~P~i~IIdprTGe~~~ 211 (305)
.++. +++.+...+......+...+ ..+..-.+.+++|.-++.+ ...++++.|++. .+|.++|+++.+++.-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~ 167 (184)
T PF13848_consen 93 SPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKYYY 167 (184)
T ss_dssp TSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE
T ss_pred CCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcEEc
Confidence 3444 55555544444444443221 2333333556777766666 445688899886 89999999998877533
Q ss_pred EecCCCChHHHH
Q 021955 212 SWCGMINPQPLG 223 (305)
Q Consensus 212 ~~~G~~~~~~~l 223 (305)
...|.++++.+.
T Consensus 168 ~~~~~~~~~~i~ 179 (184)
T PF13848_consen 168 LPEGEITPESIE 179 (184)
T ss_dssp --SSCGCHHHHH
T ss_pred CCCCCCCHHHHH
Confidence 347777775543
No 147
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.55 E-value=0.12 Score=34.15 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=44.7
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHH-HHhcCCCCCceEEEEeCC
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV-CSFYNMDSIPAVLVIDPI 205 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~-~~~Y~~~~~P~i~IIdpr 205 (305)
|+.++..+|..|+.+...+ ..- .+.+.++.+..++.+....... ...+++..+|.+.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVL-AEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHH-HHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4667788999999985432 111 4567788888888877665433 357888999999999963
No 148
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.52 E-value=0.47 Score=39.24 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=45.0
Q ss_pred HHHcC-CeEEEEee-cCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhH---------------------HHHH
Q 021955 132 ALAQD-KWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG---------------------WKVC 188 (305)
Q Consensus 132 Ak~~~-KwLLVniq-~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg---------------------~~~~ 188 (305)
+.-.+ |+++|++. .+||..|..--..+ .....++-+.++.++.++.++++. .+++
T Consensus 23 ~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (149)
T cd03018 23 SEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA 100 (149)
T ss_pred HHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH
Confidence 33345 88888776 78999997543322 122222223345555554444321 3344
Q ss_pred HhcCCC----CC--ceEEEEeCCCCeeEEEecCC
Q 021955 189 SFYNMD----SI--PAVLVIDPITGQKICSWCGM 216 (305)
Q Consensus 189 ~~Y~~~----~~--P~i~IIdprTGe~~~~~~G~ 216 (305)
+.|++. .+ |+..|||+ .|+.+..+.|.
T Consensus 101 ~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 101 KAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred HHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 455543 22 37788886 58877777664
No 149
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.43 E-value=0.65 Score=38.08 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=37.6
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHH-HHHhcCCCCCceEEEEeC
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWK-VCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~-~~~~Y~~~~~P~i~IIdp 204 (305)
++.||+++-..||..|+.--..+ +....++-..++.++.+..++.+... +++.+. +|+-++.||
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~---~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKLEAFDKGKF---LPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC---CCCeEEECC
Confidence 44555555689999998765443 33334444567888888888765442 444332 333344454
No 150
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.86 E-value=0.27 Score=32.91 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
++.|.+.+++--..+.+.-+..|+.++||+|.||+..++.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4678888888788899999999999999999999988763
No 151
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=92.44 E-value=0.39 Score=32.27 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
.+.|.+.+++=-..+.+..+..|+.++||+|.||+..++.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4566777777678899999999999999999999988763
No 152
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.11 E-value=0.66 Score=34.74 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=41.6
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecC-CCChHHH
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG-MINPQPL 222 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G-~~~~~~~ 222 (305)
.+++|..|..+- ..+.+.+.++=|-..+..- .+..++ ..|++.+.|.+ +|| |+. +|.| ..+.+++
T Consensus 6 ~~~~C~~C~~~~------~~~~~~~~~~~i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~~p~~~el 71 (76)
T PF13192_consen 6 FSPGCPYCPELV------QLLKEAAEELGIEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGRVPSKEEL 71 (76)
T ss_dssp ECSSCTTHHHHH------HHHHHHHHHTTEEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEE--EEESS--HHHHH
T ss_pred eCCCCCCcHHHH------HHHHHHHHhcCCeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEE--EEEecCCCHHHH
Confidence 466799999773 4455555543243344332 444444 99999999999 666 663 3778 5566666
Q ss_pred HHHH
Q 021955 223 GEML 226 (305)
Q Consensus 223 l~~L 226 (305)
.+.|
T Consensus 72 ~~~l 75 (76)
T PF13192_consen 72 KELL 75 (76)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 153
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.05 E-value=0.079 Score=51.90 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=38.9
Q ss_pred hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 7 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
...+.|.+|+++ ||.++..|+.||+.++||++.|...++...
T Consensus 3 ~p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 3 IPLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred CchhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence 357889999999 999999999999999999999999999864
No 154
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=90.34 E-value=2.8 Score=37.18 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCC--------C-hhHHHHHH-hcCCCCCceEE
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------T-SEGWKVCS-FYNMDSIPAVL 200 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~d--------s-~eg~~~~~-~Y~~~~~P~i~ 200 (305)
.+.=.+|.+||++.++||..|..+.. -++...+|=...|.++.+..+ + .+...+++ .|.+ .||.+.
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q~~~---L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~ 95 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQYEQ---LENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFS 95 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHHHHH---HHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEE
Confidence 34446899999999999998865531 012222233346888887653 2 34567776 5765 589888
Q ss_pred EEeCCCCee
Q 021955 201 VIDPITGQK 209 (305)
Q Consensus 201 IIdprTGe~ 209 (305)
=+|. +|+.
T Consensus 96 k~dv-nG~~ 103 (183)
T PRK10606 96 KIEV-NGEG 103 (183)
T ss_pred EEcc-CCCC
Confidence 8885 4553
No 155
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.18 E-value=1.4 Score=41.36 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeC
Q 021955 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
|-++...+ ...-|++|.|+.+.+..|..||.-+ .....+|..-.||=..+..- + ++..|.....|+|+|.-
T Consensus 136 ~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~-~----~~~~f~~~~LPtllvYk- 206 (265)
T PF02114_consen 136 FLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKC-P----ASENFPDKNLPTLLVYK- 206 (265)
T ss_dssp HHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGC-C----TTTTS-TTC-SEEEEEE-
T ss_pred HHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhcc-C----cccCCcccCCCEEEEEE-
Confidence 44444332 2356999999999999999998665 45666677777765544221 1 56678889999999997
Q ss_pred CCCeeEEEecCC---CChHHHHHHHHHHHhhCCC
Q 021955 205 ITGQKICSWCGM---INPQPLGEMLLPFMDRSPR 235 (305)
Q Consensus 205 rTGe~~~~~~G~---~~~~~~l~~L~~fl~~~~~ 235 (305)
.|..+..+.|. ..-+-+...|..||.++-.
T Consensus 207 -~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 207 -NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp -TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred -CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 59999887764 2345567889999987754
No 156
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=0.051 Score=49.80 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=38.9
Q ss_pred chhhHHHHHhhhccccCC-CH-HHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021955 5 SIDKESRISSFLEIAVGA-SG-VTAIECLQATSWKLDEAILLFFAVNE 50 (305)
Q Consensus 5 s~~~~~~i~~F~~iTtg~-~~-~~A~~~Le~~~wdLe~Av~~ff~~~~ 50 (305)
+.++..+|.+|..++..+ .+ .-|+.||++.||||..|++.||..+.
T Consensus 20 t~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 20 TTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 457899999999995333 44 78999999999999999999999764
No 157
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=89.68 E-value=0.51 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAIL 43 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~ 43 (305)
.+.|.-.++= ||++.+.|+.-|+.|||||-.||-
T Consensus 79 ~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 3456666676 899999999999999999999986
No 158
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=88.90 E-value=0.61 Score=38.55 Aligned_cols=36 Identities=33% Similarity=0.304 Sum_probs=31.1
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021955 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (305)
Q Consensus 8 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ 44 (305)
..+.|.-.++= ||++.+.|+.-|+.|||||-.||-.
T Consensus 76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 34567777777 8999999999999999999999974
No 159
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=88.59 E-value=0.83 Score=38.23 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCChhHHHHHHhc---CCCCCceEEEEeCCC
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSEGWKVCSFY---NMDSIPAVLVIDPIT 206 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~eg~~~~~~Y---~~~~~P~i~IIdprT 206 (305)
.+...++.-++-|..+||.+|... -|.+..+...+ -|=+.+- ...+...+...| ...+.|+++|+|. .
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~------vP~l~kiae~~p~i~~~~i-~rd~~~el~~~~lt~g~~~IP~~I~~d~-~ 107 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARN------VPVLAKIAEANPNIEVRII-LRDENKELMDQYLTNGGRSIPTFIFLDK-D 107 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHH------HHHHHHHHHH-TTEEEEEE--HHHHHHHTTTTTT-SS--SSEEEEE-T-T
T ss_pred HHhcCCCcEEEEEECCCchhHHHH------HHHHHHHHHhCCCCeEEEE-EecCChhHHHHHHhCCCeecCEEEEEcC-C
Confidence 334456677777888999999887 58888888776 3322221 223344444444 4578999999996 4
Q ss_pred CeeEEEecCC
Q 021955 207 GQKICSWCGM 216 (305)
Q Consensus 207 Ge~~~~~~G~ 216 (305)
|+.+.+|...
T Consensus 108 ~~~lg~wger 117 (129)
T PF14595_consen 108 GKELGRWGER 117 (129)
T ss_dssp --EEEEEESS
T ss_pred CCEeEEEcCC
Confidence 9999999753
No 160
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=2.2 Score=41.73 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=66.1
Q ss_pred HHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHh--hccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCC
Q 021955 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i--~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTG 207 (305)
...+..+.-.||-++.+||..|+.|- -.| ..+...+ ..+.-++.++.+ ....+++.+.+..||++.+.-+ |
T Consensus 156 ~~~~~~~~~~lv~f~aPwc~~ck~l~-~~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~--~ 228 (383)
T KOG0191|consen 156 ETVKDSDADWLVEFYAPWCGHCKKLA-PEW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP--G 228 (383)
T ss_pred hhhhccCcceEEEEeccccHHhhhcC-hHH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC--C
Confidence 34456677778888999999999992 222 1222222 255666666655 6778999999999999977765 3
Q ss_pred ee-EEEecCCCChHHHHHHHHHHHhhC
Q 021955 208 QK-ICSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 208 e~-~~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
.. .....|..+.+.++.-+.......
T Consensus 229 ~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 229 EEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred CcccccccccccHHHHHHHHHhhcCCC
Confidence 33 444566678888777777766653
No 161
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=88.50 E-value=1.7 Score=36.11 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCeEEEEeec-------CCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhH-----HHHHH
Q 021955 125 FEKAKDAALAQDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEG-----WKVCS 189 (305)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~-------~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg-----~~~~~ 189 (305)
|.++++.....++.|+|++.+ +||.+|..- .+.|.+.++. +.+|..+.+.+... ..|-+
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 455555556677999999986 488888665 5667666664 67777776654432 13444
Q ss_pred --hcCCCCCceEEEEe
Q 021955 190 --FYNMDSIPAVLVID 203 (305)
Q Consensus 190 --~Y~~~~~P~i~IId 203 (305)
.+++...|+|+-..
T Consensus 82 ~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWE 97 (119)
T ss_dssp --CC---SSSEEEECT
T ss_pred cceeeeeecceEEEEC
Confidence 68899999999887
No 162
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=88.33 E-value=2.2 Score=31.63 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcC--CCCCceEEEEe
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYN--MDSIPAVLVID 203 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~--~~~~P~i~IId 203 (305)
++.++|++.++||..|+.+ .+.+.++.++ ...|..++..+ ........|. +..+|.+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEe
Confidence 8899999889999999999 5666666655 35666666542 5566777777 78889887554
No 163
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=88.27 E-value=2.5 Score=35.30 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCeEEEEeecCCCccchhhhhccCCC--HHHHHHhhcc-EEEEEecCCChhHHHHHHhcCC--CCCceEEEEeCCCCeeE
Q 021955 136 DKWLLVNLQSTKEFSSLMLNRDTWGN--EAVSQIISVN-FIFWQEYDDTSEGWKVCSFYNM--DSIPAVLVIDPITGQKI 210 (305)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~n--~~V~~~i~~n-FIfwq~~~ds~eg~~~~~~Y~~--~~~P~i~IIdprTGe~~ 210 (305)
+.|=+|-|-.. ..+|..=.++-|.+ ..|.+-.+.. +.|.-++.+.... +.+++++ ..||.++|+++..| +.
T Consensus 20 ~~~C~i~~l~~-~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY 95 (130)
T cd02983 20 KQLCIIAFLPH-ILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KF 95 (130)
T ss_pred CCeEEEEEcCc-cccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cc
Confidence 45666666442 33443322222211 2344444455 6666555555443 8888998 45999999998655 44
Q ss_pred EEecCCCChHHHHHHHHHHHhhC
Q 021955 211 CSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 211 ~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
....|.++.+.+.+-|.+|++..
T Consensus 96 ~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 96 ATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccccCccCHHHHHHHHHHHHcCC
Confidence 43678888888777777777643
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.23 E-value=1.7 Score=40.41 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=59.1
Q ss_pred HHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-----cEEEEEecC-CC--------------------
Q 021955 128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----NFIFWQEYD-DT-------------------- 181 (305)
Q Consensus 128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-----nFIfwq~~~-ds-------------------- 181 (305)
++.......|-.++.|.|++|..|++|..+ +..+++. .+|.+.+-. ++
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~ 182 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY 182 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence 455555677888999999999999999543 4444443 233332211 10
Q ss_pred ----------------h-------hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 182 ----------------S-------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 182 ----------------~-------eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
. +..++.+.+.+...|+|++.|. +| .+.+..|+.++++|.+.|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CC-CEEEecCCCCHHHHHHHhC
Confidence 0 1112444566789999999996 46 3556789999998877663
No 165
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=5.1 Score=34.91 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=65.4
Q ss_pred HHHHHcCCeEEEEeec-CCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHH-------------------HHHH
Q 021955 130 DAALAQDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------KVCS 189 (305)
Q Consensus 130 ~~Ak~~~KwLLVniq~-~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~-------------------~~~~ 189 (305)
..+.-.+||+++|++- .+.+-|..=-.+. ++...+|=+-+.+.+.++.|+++.. +++.
T Consensus 24 ~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F--rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~ 101 (157)
T COG1225 24 SLSDLRGKPVVLYFYPKDFTPGCTTEACDF--RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAE 101 (157)
T ss_pred ehHHhcCCcEEEEECCCCCCCcchHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHH
Confidence 3445568899999996 3455554433332 4556666677899999999976433 4566
Q ss_pred hcCC------------CCCceEEEEeCCCCeeEEEecCC---CChHHHHHHHHHH
Q 021955 190 FYNM------------DSIPAVLVIDPITGQKICSWCGM---INPQPLGEMLLPF 229 (305)
Q Consensus 190 ~Y~~------------~~~P~i~IIdprTGe~~~~~~G~---~~~~~~l~~L~~f 229 (305)
.|.+ ..-+...|||+ .|.....|... ..++++++.|...
T Consensus 102 ~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 102 AYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 6665 24578899997 69999999543 2466777776653
No 166
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=87.54 E-value=3.7 Score=28.91 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=41.4
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCC--hhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCC
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT--SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds--~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~ 217 (305)
.-++.+||..|+.+.+ ++++ +.-+..++++. .....+...+++..+|++.+ + |+. +.| .
T Consensus 3 ~lf~~~~C~~C~~~~~----------~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g-~ 64 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKE----------YLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVG-F 64 (74)
T ss_pred EEEcCCCChhHHHHHH----------HHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---Eee-C
Confidence 3456679999998732 2232 34455556654 34556888899999999976 3 543 566 3
Q ss_pred ChHHHHH
Q 021955 218 NPQPLGE 224 (305)
Q Consensus 218 ~~~~~l~ 224 (305)
+++.+.+
T Consensus 65 ~~~~i~~ 71 (74)
T TIGR02196 65 DPEKLDQ 71 (74)
T ss_pred CHHHHHH
Confidence 6655443
No 167
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=87.09 E-value=2.2 Score=39.15 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=55.9
Q ss_pred HHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc----EEEEEecCCCh------------------------
Q 021955 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN----FIFWQEYDDTS------------------------ 182 (305)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n----FIfwq~~~ds~------------------------ 182 (305)
....++|-.++.|.|++|..|++|. +++.++.+.+ |+.|...-..+
T Consensus 102 ~g~~~~k~~I~vFtDp~CpyCkkl~------~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 102 YKAPQEKHVITVFTDITCGYCHKLH------EQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred ecCCCCCEEEEEEECCCChHHHHHH------HHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 3455678899999999999999995 4466665533 33343311111
Q ss_pred --------------hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 183 --------------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 183 --------------eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
+-.++++.+++...|+|++-| |+.+ .|+.++++|.+.|..
T Consensus 176 ~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~---G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 176 GKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSN---GTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred CCCCCcccccchHHHhHHHHHHcCCccccEEEEcC---CeEe---eCCCCHHHHHHHHHH
Confidence 122344456678899998655 6653 798899987666653
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.95 E-value=6.1 Score=40.64 Aligned_cols=83 Identities=19% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHcCCeEEEEe-ecCCCccchhhhhccCCCHHHHHHhhcc--EEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCC
Q 021955 130 DAALAQDKWLLVNL-QSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT 206 (305)
Q Consensus 130 ~~Ak~~~KwLLVni-q~~~~f~c~~lnRDvw~n~~V~~~i~~n--FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprT 206 (305)
+.-++-+|.+-|-+ .+++|..|.... ..+.++..+| .-..-+ +..+-..++..|++.+.|+++| +
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~------~~~~~~~~~~~~i~~~~i--~~~~~~~~~~~~~v~~vP~~~i----~ 536 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVV------LAAQRIASLNPNVEAEMI--DVSHFPDLKDEYGIMSVPAIVV----D 536 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHH------HHHHHHHHhCCCceEEEE--ECcccHHHHHhCCceecCEEEE----C
Confidence 33355567776666 788999998874 3445566655 443333 4445568899999999999986 3
Q ss_pred CeeEEEecCCCChHHHHHHH
Q 021955 207 GQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 207 Ge~~~~~~G~~~~~~~l~~L 226 (305)
|+.+ +.|.++.+++++.|
T Consensus 537 ~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 537 DQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred CEEE--EeeCCCHHHHHHhh
Confidence 5543 67988999998876
No 169
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=82.86 E-value=2.5 Score=40.80 Aligned_cols=99 Identities=11% Similarity=0.144 Sum_probs=63.5
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEE-ecCCChhHHHHHHhcCCCCCceE
Q 021955 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQ-EYDDTSEGWKVCSFYNMDSIPAV 199 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq-~~~ds~eg~~~~~~Y~~~~~P~i 199 (305)
+-.++++-...-|.++-| +|.++.+||.-|++|. -||. +|.--++.-=.-.. .-.|-+.=..+++.+.++.||+|
T Consensus 29 ~VeDLddkFkdnkdddiW-~VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIW-FVDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred hhhhhhHHhhhcccCCeE-EEEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 344556666666777777 6899999999999995 4552 34333332111111 12233444567888999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 200 LVIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 200 ~IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
.++- |-....+.|..+.+.+++--
T Consensus 105 k~~k---gd~a~dYRG~R~Kd~iieFA 128 (468)
T KOG4277|consen 105 KFFK---GDHAIDYRGGREKDAIIEFA 128 (468)
T ss_pred EEec---CCeeeecCCCccHHHHHHHH
Confidence 9986 44556677777777765543
No 170
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=3.8 Score=41.88 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh--ccEEEEEecCCChhHHHHHHhcCCCCCc
Q 021955 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (305)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~--~nFIfwq~~~ds~eg~~~~~~Y~~~~~P 197 (305)
.-.-+|++ .+..++|=+||-++.+||.-|+.|--- =+++.+..+ ++-|+-.+|+...|-.. ..++.||
T Consensus 371 vVgknfd~---iv~de~KdVLvEfyAPWCgHCk~laP~---~eeLAe~~~~~~~vviAKmDaTaNd~~~----~~~~~fP 440 (493)
T KOG0190|consen 371 VVGKNFDD---IVLDEGKDVLVEFYAPWCGHCKALAPI---YEELAEKYKDDENVVIAKMDATANDVPS----LKVDGFP 440 (493)
T ss_pred EeecCHHH---HhhccccceEEEEcCcccchhhhhhhH---HHHHHHHhcCCCCcEEEEeccccccCcc----ccccccc
Confidence 33444554 567889999999999999999999321 234444444 36788888777665322 2356799
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021955 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~~ 236 (305)
+|.+.-.-..+....++|..+ ++.|..|++.+...
T Consensus 441 TI~~~pag~k~~pv~y~g~R~----le~~~~fi~~~a~~ 475 (493)
T KOG0190|consen 441 TILFFPAGHKSNPVIYNGDRT----LEDLKKFIKKSATE 475 (493)
T ss_pred eEEEecCCCCCCCcccCCCcc----hHHHHhhhccCCCc
Confidence 999886422234555666554 45577788876553
No 171
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=80.26 E-value=2.8 Score=34.96 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=28.4
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021955 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (305)
Q Consensus 10 ~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ 44 (305)
+-|.--++= +|.+.+.|+.-|+.+|+||-.||-.
T Consensus 86 eDIkLV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 86 EDIKLVMEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 445555666 8999999999999999999999854
No 172
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=79.69 E-value=5.2 Score=34.08 Aligned_cols=67 Identities=6% Similarity=-0.172 Sum_probs=45.2
Q ss_pred cCCeEEEEeec-CCCccchhh-hhccCCCHHHHHHhhccE-EEEEecCCChhHHH-HHHhcCCCCCceEEEEeC
Q 021955 135 QDKWLLVNLQS-TKEFSSLML-NRDTWGNEAVSQIISVNF-IFWQEYDDTSEGWK-VCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 135 ~~KwLLVniq~-~~~f~c~~l-nRDvw~n~~V~~~i~~nF-Ifwq~~~ds~eg~~-~~~~Y~~~~~P~i~IIdp 204 (305)
.+||++|+++- .+|+.|..- -+.+ ++...+|-+.+. .++.++.|++...+ ++..+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 56788887774 689999763 3333 455667777788 59999999987665 77777662 133344565
No 173
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=79.47 E-value=12 Score=26.89 Aligned_cols=70 Identities=9% Similarity=-0.109 Sum_probs=37.6
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHhhccEE-EEEecCCCh-hHHHHHHh--cCCCCCceEEEEeCCCCeeEEEecCC
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFI-FWQEYDDTS-EGWKVCSF--YNMDSIPAVLVIDPITGQKICSWCGM 216 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFI-fwq~~~ds~-eg~~~~~~--Y~~~~~P~i~IIdprTGe~~~~~~G~ 216 (305)
+-+..+||..|+.+. .++.++-+ |..++++.. +....... +.....|+| +++ .|+.+. .
T Consensus 3 ~ly~~~~C~~C~~~~----------~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~----~ 65 (77)
T TIGR02200 3 TVYGTTWCGYCAQLM----------RTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT----N 65 (77)
T ss_pred EEEECCCChhHHHHH----------HHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----C
Confidence 344567999998863 34554322 334555533 32233222 367889997 454 355432 2
Q ss_pred CChHHHHHHHH
Q 021955 217 INPQPLGEMLL 227 (305)
Q Consensus 217 ~~~~~~l~~L~ 227 (305)
.+..++.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 45556665554
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=78.58 E-value=6.6 Score=27.46 Aligned_cols=50 Identities=6% Similarity=0.028 Sum_probs=33.9
Q ss_pred EeecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 142 NLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 142 niq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
-+..++|..|... ++++++ .|..+-++.+......+...++..++|.|.|
T Consensus 3 vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 3 VYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 3455789999776 455554 3666666555444556666668899999986
No 175
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=76.53 E-value=9.4 Score=26.63 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHc--CCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC---hhHHHHHHhcCCCCCc
Q 021955 123 GSFEKAKDAALAQ--DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---SEGWKVCSFYNMDSIP 197 (305)
Q Consensus 123 gsf~~A~~~Ak~~--~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds---~eg~~~~~~Y~~~~~P 197 (305)
-|.++|++.|++. ++.+.+.+.... +.-..|++.+.. ++| --
T Consensus 2 is~~~A~~~A~~~~~~~~~~~~~~~~~----------------------~~~~~Y~v~~~~~~~~~~-----------~~ 48 (64)
T PF03413_consen 2 ISEEQAVEIALKQYPGKVISVELEEDE----------------------NGRLVYEVEVVSDDDPDG-----------GE 48 (64)
T ss_dssp --HHHHHHHHHCCCCCEEEEEEEECC-----------------------TCEEEEEEEEEBTTSTTT-----------EE
T ss_pred cCHHHHHHHHHHHCCCCEEEEEEcccc----------------------CCcEEEEEEEEEEecCCC-----------CE
Confidence 4678999999988 444444444321 345567766554 222 22
Q ss_pred eEEEEeCCCCeeEEEe
Q 021955 198 AVLVIDPITGQKICSW 213 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~ 213 (305)
+-+.||+.||+.+..|
T Consensus 49 ~~v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 49 YEVYVDAYTGEILSSY 64 (64)
T ss_dssp EEEEEETTT--EEEEE
T ss_pred EEEEEECCCCeEEEeC
Confidence 6677999999998765
No 176
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=74.81 E-value=9.8 Score=27.88 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=35.1
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh--hHH-HHHHhcCCCCCceEEEEe
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGW-KVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~--eg~-~~~~~Y~~~~~P~i~IId 203 (305)
+-+..+||..|+.+.+ ++..-. ++..|.++.++.+.. +-. .+.+.+...++|.|. |+
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-IN 61 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-EC
Confidence 4456789999998842 221111 222377887776532 222 366778888999984 55
No 177
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=74.19 E-value=9.1 Score=30.89 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=35.2
Q ss_pred cEEEEEecCCChhHHHHHHhcCCC--CCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 171 NFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 171 nFIfwq~~~ds~eg~~~~~~Y~~~--~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
...|.-+|.+.-.+ .++++++. .+|.|+|++-..+.+..-..+.++++.+..-+.+|++
T Consensus 49 ki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 49 AINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred eEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 34444443333333 77788885 4999999997432322213466777776666666654
No 178
>CHL00098 tsf elongation factor Ts
Probab=74.06 E-value=4.5 Score=36.58 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 10 ~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
++|.+..+. ||+..-.|++-|+.++||++.|++..-..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 578888999 999999999999999999999998776644
No 179
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=73.11 E-value=4.6 Score=38.57 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
.++|.+..+. ||+..-.|++-|+.++||+|.|+..-=..+
T Consensus 5 a~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 5 AQLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4679999999 999999999999999999999999886654
No 180
>PRK09377 tsf elongation factor Ts; Provisional
Probab=72.85 E-value=4.7 Score=38.50 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=36.7
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 8 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
..++|.+..+. ||+..-.|++-|+.+|||+|.|+..--..|
T Consensus 5 s~~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 5 TAALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred CHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 35788999999 999999999999999999999999887654
No 181
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=71.78 E-value=5.5 Score=35.92 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
.++|.+..+. ||+..-.|++-|+.++||++.|+...-..+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 4678999999 999999999999999999999999886654
No 182
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=69.64 E-value=18 Score=26.38 Aligned_cols=55 Identities=9% Similarity=-0.035 Sum_probs=33.9
Q ss_pred EEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCCh-hH--HHHHHhcCCCCCceEEEEe
Q 021955 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-EG--WKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~-eg--~~~~~~Y~~~~~P~i~IId 203 (305)
+-+..++|+.|..+.+ + .+-++..|-++.++.+.. +. ..+.+.+...++|.| +++
T Consensus 3 ~~y~~~~Cp~C~~~~~-~------l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-L------LKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEcCCCHHHHHHHH-H------HHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 4455679999988732 1 122223577777776643 22 245567788899998 455
No 183
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=69.57 E-value=17 Score=25.63 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=36.9
Q ss_pred chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 5 s~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
+.-.+++|.+-..+--|.+.++-++=|+++|-|++.||+-.+...
T Consensus 6 ~~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhccc
Confidence 445678999999988999999999999999999999999887643
No 184
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=68.49 E-value=4.8 Score=41.78 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=70.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-----c-EEEEEecCCChhHHHHHHhcCCCC
Q 021955 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----N-FIFWQEYDDTSEGWKVCSFYNMDS 195 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-----n-FIfwq~~~ds~eg~~~~~~Y~~~~ 195 (305)
..+|..|+..++ |--||-+.++||..|+.+ -+..+++-+. . -....+|-...+...+|+.++|..
T Consensus 46 ~~tf~~~v~~~~---~~~lVEFy~swCGhCr~F------APtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 46 VDTFNAAVFGSR---KAKLVEFYNSWCGHCRAF------APTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred hhhhHHHhcccc---hhHHHHHHHhhhhhhhhc------chHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 345566655544 455888999999999999 5666666553 2 346667777899999999999999
Q ss_pred CceEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHh
Q 021955 196 IPAVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 196 ~P~i~IIdprTGe~--~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
||+|-..-|.+-.. =....|.+.+.+..+.|..-|.
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999997642110 1124566667777766666654
No 185
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=68.44 E-value=8.3 Score=36.89 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
..+|....+. ||+..-.|++-|+.+++|+|.||...=..|
T Consensus 6 a~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 6 AALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4678889999 999999999999999999999999876654
No 186
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=65.21 E-value=4.2 Score=38.69 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=34.1
Q ss_pred HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 11 RISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 11 ~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
.+-.|.++|+.+++..|..+|.-..|+++.|+..||...
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 345566777999999999999999999999999999853
No 187
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=64.74 E-value=26 Score=24.40 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=29.2
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCC-hh-HHHHHHhcCCCCCceEEE
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT-SE-GWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds-~e-g~~~~~~Y~~~~~P~i~I 201 (305)
++-++..+|..|+.+ +.++++ ++-+-.++++. .+ ...+........+|.|.+
T Consensus 2 v~l~~~~~c~~c~~~----------~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKAT----------KRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHH----------HHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 455677899999875 233332 23233344443 22 234444446789998864
No 188
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.29 E-value=35 Score=34.71 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCeE-EEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeC
Q 021955 126 EKAKDAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 126 ~~A~~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
++.++..++-+|.+ +--+.+++|+.|...-+-. .. ....+.|..+..+ |..+-..++..|++.+.|++.| +
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~---~~-~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i-~- 176 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL---NL-MAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFL-N- 176 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH---HH-HHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEE-C-
Confidence 34444555556665 5555667899997653221 11 1123444444443 6777778999999999999965 4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHH
Q 021955 205 ITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 205 rTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
|+. .+.|..+.++|++.|..
T Consensus 177 --~~~--~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 177 --GEE--FGQGRMTLEEILAKLDT 196 (517)
T ss_pred --CcE--EEecCCCHHHHHHHHhc
Confidence 443 36788888888877764
No 189
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=63.98 E-value=9.2 Score=36.98 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=35.4
Q ss_pred hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021955 6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46 (305)
Q Consensus 6 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff 46 (305)
..+.++|.+..+= ||.+...|++-|+.|||||..|..---
T Consensus 44 ~~~~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~L~ 83 (340)
T KOG1071|consen 44 ASSKALLKKLREK-TGASMVNCKKALEECGGDLVLAEEWLH 83 (340)
T ss_pred cccHHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3578999999999 999999999999999999998875443
No 190
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.67 E-value=26 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=32.5
Q ss_pred CeEEEEeec----CCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCChhHH-HHHHhcCCCCCceEEEEe
Q 021955 137 KWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGW-KVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 137 KwLLVniq~----~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~eg~-~~~~~Y~~~~~P~i~IId 203 (305)
+.++|+..+ ++|..|... +++++++ |...-+..+ ++.+ .+.+.....++|.| +|+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~a----------k~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKV----------VQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHH----------HHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE-EEC
Confidence 556666665 588888765 4555543 444433333 3333 44455667899998 555
No 191
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=62.20 E-value=13 Score=25.80 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021955 20 VGASGVTAIECLQATSWKLDEAILLFF 46 (305)
Q Consensus 20 tg~~~~~A~~~Le~~~wdLe~Av~~ff 46 (305)
...+...-.+||.+.+||++.|+.++-
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 355778999999999999999998763
No 192
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.05 E-value=4.3 Score=38.13 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=36.3
Q ss_pred CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHH-HHHHH
Q 021955 4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEA-ILLFF 46 (305)
Q Consensus 4 ~s~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~A-v~~ff 46 (305)
+...+.+++.+||.. |..+..+++.+|..++|+++.| ...||
T Consensus 4 lk~~~~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~~ 46 (260)
T KOG3077|consen 4 LKSSQKDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSYY 46 (260)
T ss_pred cchhHHHHHHhhccc-ccccchhhhhhhcccccccchhcccchh
Confidence 334488999999999 9999999999999999999999 44454
No 193
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=61.40 E-value=93 Score=26.45 Aligned_cols=92 Identities=10% Similarity=0.083 Sum_probs=59.3
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEE---------e
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI---------D 203 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~II---------d 203 (305)
.++.|.|+|-+-..|+..|..|..-+ ..+.+-+++..++|-++.+ +-..|.+.|.+. -|.-++. |
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL---~~~a~~v~~~a~IY~vDi~--~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEIL---YKIAEKVKNFAVIYLVDID--EVPDFNQMYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETT--TTHCCHHHTTS--SSEEEEEEETTEEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHH---HHHHHHhhcceEEEEEEcc--cchhhhcccccC-CCeEEEEEecCeEEEEE
Confidence 57899999999999999999995432 2345566777899999877 444577888876 5543332 3
Q ss_pred CCCCeeEEEecCCC-ChHHHHHHHHHHHh
Q 021955 204 PITGQKICSWCGMI-NPQPLGEMLLPFMD 231 (305)
Q Consensus 204 prTGe~~~~~~G~~-~~~~~l~~L~~fl~ 231 (305)
--||..-+ |.+.+ +.++||+.+..+..
T Consensus 91 ~GtgnnnK-in~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 91 FGTGNNNK-INWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp SSSSSSSS-BCS--SCHHHHHHHHHHHHH
T ss_pred ecCCCccE-EEEEcCcHHHHHHHHHHHHH
Confidence 33333311 55554 68889888776654
No 194
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=58.91 E-value=36 Score=26.09 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHcC--CeEEEEeecCCCccc----hh--------hhhccCCCHHHHHHhhccEEEEEecCCChhHHH
Q 021955 121 FNGSFEKAKDAALAQD--KWLLVNLQSTKEFSS----LM--------LNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWK 186 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~--KwLLVniq~~~~f~c----~~--------lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~ 186 (305)
...+..+|+..-+..+ .+++|- .+ ..+-- .. +.++++.+..|.++++.+++....+..-.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~Vv-d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 85 (119)
T cd04598 8 PDTTVNDVLERFERDPDLSALAVV-DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLEEVSR 85 (119)
T ss_pred CCCcHHHHHHHHHhCCCccEEEEE-EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHHHHHH
Confidence 4556888887766554 344332 12 32210 00 122334566799999989888877666677888
Q ss_pred HHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHH
Q 021955 187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGE 224 (305)
Q Consensus 187 ~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~ 224 (305)
+...++....+.+.+|+. .|+. -|.++..+++.
T Consensus 86 ~~~~~~~~~~~~~~vv~~-~~~~----~Gvvs~~di~~ 118 (119)
T cd04598 86 LATGRDSQNLYDGFIVTE-EGRY----LGIGTVKDLLR 118 (119)
T ss_pred HHHcCCcccccccEEEee-CCeE----EEEEEHHHHhc
Confidence 877777655555567775 3653 36666666653
No 195
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=58.12 E-value=1.2e+02 Score=25.86 Aligned_cols=92 Identities=8% Similarity=0.124 Sum_probs=63.4
Q ss_pred HHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEE-
Q 021955 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC- 211 (305)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~- 211 (305)
..+.|.++|-+-..|...|-.|.- ++ ..+.+-+++--+.|-++.+ +-..|.+.|.+...|++.+.=. ++-|+
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~-~L--~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn--~kHmki 92 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDE-LL--SSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFN--NKHMKI 92 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHH-HH--HHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEc--CceEEE
Confidence 567899999999999999999931 11 1233334434467878776 6677889999999998876642 22222
Q ss_pred --------EecCCC-ChHHHHHHHHHHHh
Q 021955 212 --------SWCGMI-NPQPLGEMLLPFMD 231 (305)
Q Consensus 212 --------~~~G~~-~~~~~l~~L~~fl~ 231 (305)
.|+|++ +.++||+.+.....
T Consensus 93 D~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 93 DLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred eeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 256654 78888888877665
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.84 E-value=59 Score=33.04 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCeE-EEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeC
Q 021955 126 EKAKDAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (305)
Q Consensus 126 ~~A~~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdp 204 (305)
++.++..++-+|.+ +--+.++.|+.|...-+-. .-....+.|..+. + +|..+-..++..|++.+.|++.| +
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~----~~~a~~~p~i~~~-~-id~~~~~~~~~~~~v~~VP~~~i-~- 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL----NQMALLNPNISHT-M-IDGALFQDEVEALGIQGVPAVFL-N- 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH----HHHHHhCCCceEE-E-EEchhCHHHHHhcCCcccCEEEE-C-
Confidence 34445555555554 4445566899997542211 1111223333333 2 67777788999999999999975 4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHHH
Q 021955 205 ITGQKICSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 205 rTGe~~~~~~G~~~~~~~l~~L~~f 229 (305)
|+. .+.|..+.++|++.|...
T Consensus 178 --~~~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 --GEE--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred --CcE--EEecCCCHHHHHHHHhhc
Confidence 443 377888888888887665
No 197
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=55.75 E-value=42 Score=25.44 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=28.1
Q ss_pred eecCCCccchhhhhccCCCHHHHHHhhcc------EEEEEecCCC--hhHHHHHHhcCC--CCCceEEEEe
Q 021955 143 LQSTKEFSSLMLNRDTWGNEAVSQIISVN------FIFWQEYDDT--SEGWKVCSFYNM--DSIPAVLVID 203 (305)
Q Consensus 143 iq~~~~f~c~~lnRDvw~n~~V~~~i~~n------FIfwq~~~ds--~eg~~~~~~Y~~--~~~P~i~IId 203 (305)
++.++|..|.... ++|.+. +-+.-++++. .+...+...++. .+.|.|. |+
T Consensus 5 ys~~~Cp~C~~ak----------~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~ 64 (86)
T TIGR02183 5 FGRPGCPYCVRAK----------QLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VD 64 (86)
T ss_pred EeCCCCccHHHHH----------HHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-EC
Confidence 4456999997773 444432 2333344442 223345566664 7899995 55
No 198
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=55.29 E-value=1.1e+02 Score=26.75 Aligned_cols=82 Identities=9% Similarity=0.240 Sum_probs=54.5
Q ss_pred ccchhhh-hccCCCHHHHHHhhccE-----EEEEecCCChhHHHHHHhcCCCC----------Cc-eEEEEeCCCCeeEE
Q 021955 149 FSSLMLN-RDTWGNEAVSQIISVNF-----IFWQEYDDTSEGWKVCSFYNMDS----------IP-AVLVIDPITGQKIC 211 (305)
Q Consensus 149 f~c~~ln-RDvw~n~~V~~~i~~nF-----Ifwq~~~ds~eg~~~~~~Y~~~~----------~P-~i~IIdprTGe~~~ 211 (305)
|+|..|- ..-=+++++.+|-..|| +|=.+++...++..+-+++.-.. .= +=.+|| |.|+.+.
T Consensus 63 FPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvd-r~G~VV~ 141 (162)
T COG0386 63 FPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVD-RDGNVVK 141 (162)
T ss_pred ccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEc-CCCcEEE
Confidence 7887665 55557889999999886 56666777666654444332110 11 234567 7899999
Q ss_pred EecCCCChHHHHHHHHHHHh
Q 021955 212 SWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 212 ~~~G~~~~~~~l~~L~~fl~ 231 (305)
++.-..+|+++...+...|.
T Consensus 142 Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 142 RFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred eeCCCCChhhHHHHHHHHhc
Confidence 98877888888776666553
No 199
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=54.96 E-value=51 Score=24.46 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred CccccccccHHHHHHHHHHcC-CeEEEEeecCCCccchhhhhc---cCCCHHHHHHhhccEEEEEecCCChhHHHHHHhc
Q 021955 116 PFHVMFNGSFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLNRD---TWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY 191 (305)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~lnRD---vw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y 191 (305)
+..+-...+..+|++.-++.+ ++++|. . ...+-.-.--++ .+.+..+.++++.+++.+..+..-.+..+....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 80 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVV-E-DGKLVGIITSRDVRRAHPNRLVADAMTREVVTISPEASLLEAKRLMEEK 80 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE-E-CCEEEEEEehHHhhcccccCCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence 333334556888887765544 566553 2 233321111111 1224468888888888776554445555555544
Q ss_pred CCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 192 ~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
.++++.|++. |+. .|.++..+++
T Consensus 81 ---~~~~~~Vv~~--~~~----~G~it~~~l~ 103 (105)
T cd04599 81 ---KIERLPVLRE--RKL----VGIITKGTIA 103 (105)
T ss_pred ---CCCEeeEEEC--CEE----EEEEEHHHhc
Confidence 4677888884 553 4555555443
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=54.76 E-value=23 Score=26.62 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=48.3
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHh-hccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCC
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i-~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~ 218 (305)
|+.+..++|.-|... -+.+..+. ...|-+-.+|+++ ...+...|.. ..|.+.+-++++........+.++
T Consensus 2 l~l~~k~~C~LC~~a------~~~L~~~~~~~~~~l~~vDI~~--d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA------KEILEEVAAEFPFELEEVDIDE--DPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHH------HHHHHHCCTTSTCEEEEEETTT--THHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHH------HHHHHHHHhhcCceEEEEECCC--CHHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 455667788888766 23333332 3458888888884 3448888985 799999887543332233455678
Q ss_pred hHHHHHHHH
Q 021955 219 PQPLGEMLL 227 (305)
Q Consensus 219 ~~~~l~~L~ 227 (305)
.+.+.+.|+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888766653
No 201
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=53.44 E-value=46 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=36.6
Q ss_pred hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021955 7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (305)
Q Consensus 7 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 49 (305)
.-...|+...+||++.+++.--..|..||-|-+.|++..+...
T Consensus 4 ~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD 46 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQD 46 (60)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4567899999995554999999999999999999999888753
No 202
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.43 E-value=36 Score=30.93 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=37.3
Q ss_pred hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecC--CCChHHHHHHHHHHHh
Q 021955 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG--MINPQPLGEMLLPFMD 231 (305)
Q Consensus 183 eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G--~~~~~~~l~~L~~fl~ 231 (305)
+++++++...+..||++++.+ +|++-..=.| +.+++.++..|.+-+-
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 458899999999999999999 4665444457 5689999999887653
No 203
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=50.86 E-value=89 Score=24.40 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=32.3
Q ss_pred CCeEEEEeec----CCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCC-ChhHHH-HHHhcCCCCCceEEEEe
Q 021955 136 DKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDD-TSEGWK-VCSFYNMDSIPAVLVID 203 (305)
Q Consensus 136 ~KwLLVniq~----~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~d-s~eg~~-~~~~Y~~~~~P~i~IId 203 (305)
.+.|+|+..+ ++|..|+.. ++++++. .=|.-++++ .++.+. +....+..++|.|. |+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~a----------k~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf-i~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARA----------VQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY-VK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHH----------HHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE-EC
Confidence 3556777664 689999766 4455443 223334443 244443 33444557899995 44
No 204
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=50.80 E-value=1.3e+02 Score=24.35 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-----EEEEEecCCChhHHHHHHhcCC-CCCce
Q 021955 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-----FIFWQEYDDTSEGWKVCSFYNM-DSIPA 198 (305)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-----FIfwq~~~ds~eg~~~~~~Y~~-~~~P~ 198 (305)
|++.++. ...++++|+=|++.|.-+.+-- ..+.++++.+ +.++.+-..-+--..++..|+| ..=|-
T Consensus 10 l~~i~~~--S~~~~~~iFKHSt~C~IS~~a~------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 10 LEEILEE--SKEKPVLIFKHSTRCPISAMAL------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp HHHHHHH-----SEEEEEEE-TT-HHHHHHH------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred HHHHHHh--cccCcEEEEEeCCCChhhHHHH------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4444433 3489999999999999887764 4556666532 4444443344455578889998 55899
Q ss_pred EEEEeCCCCeeEEEec-CCCChHHH
Q 021955 199 VLVIDPITGQKICSWC-GMINPQPL 222 (305)
Q Consensus 199 i~IIdprTGe~~~~~~-G~~~~~~~ 222 (305)
+++|. .|+.++.-+ +.++++.+
T Consensus 82 ~ili~--~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIK--NGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEE--TTEEEEEEEGGG-SHHHH
T ss_pred EEEEE--CCEEEEECccccCCHHhc
Confidence 99998 488876633 34666653
No 205
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=50.72 E-value=54 Score=23.42 Aligned_cols=50 Identities=6% Similarity=0.028 Sum_probs=28.3
Q ss_pred eecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCC-CCceEEEEe
Q 021955 143 LQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMD-SIPAVLVID 203 (305)
Q Consensus 143 iq~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~-~~P~i~IId 203 (305)
+..++|..|+.. ++++++ .|....++.+...-..+...+... .+|.|. |+
T Consensus 5 y~~~~Cp~C~~a----------k~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~-i~ 58 (75)
T cd03418 5 YTKPNCPYCVRA----------KALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF-IG 58 (75)
T ss_pred EeCCCChHHHHH----------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE-EC
Confidence 344689999775 444444 355544443322334455556655 899874 55
No 206
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=49.65 E-value=28 Score=23.48 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=40.4
Q ss_pred HHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021955 164 VSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (305)
Q Consensus 164 V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~ 227 (305)
|++++..+++...-+..-.+..+....++ +.++.|+|.. |+. .|.++..+++..|.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~---~~~~~V~d~~-~~~----~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNG---ISRLPVVDED-GKL----VGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHT---SSEEEEESTT-SBE----EEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcC---CcEEEEEecC-CEE----EEEEEHHHHHhhhh
Confidence 56788888888877666677777777775 6778888853 554 46677777777654
No 207
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=48.03 E-value=35 Score=29.89 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=25.5
Q ss_pred hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021955 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEM 225 (305)
Q Consensus 183 eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~ 225 (305)
+...+++.+++...|+|++-| |++ ..|+.++++|.+.
T Consensus 160 ~~~~l~~~~gi~gtPtii~~~---G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 160 ANLALGRQLGVNGTPTIVLAD---GRV---VPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHHcCCCcccEEEECC---CeE---ecCCCCHHHHHhh
Confidence 344566677889999997433 654 4788887776554
No 208
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=47.16 E-value=50 Score=24.11 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=28.9
Q ss_pred cCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 145 STKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 145 ~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
.++|..|... +++++++ |-...++.+......+...+...++|.|. |+
T Consensus 6 ~~~Cp~C~~a----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~-i~ 56 (79)
T TIGR02181 6 KPYCPYCTRA----------KALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF-IG 56 (79)
T ss_pred cCCChhHHHH----------HHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 4689999766 3444443 44444443333444566667778899984 44
No 209
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=47.07 E-value=71 Score=23.81 Aligned_cols=69 Identities=9% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEeecCCCccchhhhhccCCCHHHHHHhhc------cEEEEEecCCC--hhHHHHHHhcC--CCCCceEEEEeCCCCee
Q 021955 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDT--SEGWKVCSFYN--MDSIPAVLVIDPITGQK 209 (305)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~n~~V~~~i~~------nFIfwq~~~ds--~eg~~~~~~Y~--~~~~P~i~IIdprTGe~ 209 (305)
++-+..++|..|... ++++++ ++-+-.++++. .+...+...+. ...+|.|. || |+.
T Consensus 3 v~iy~~~~C~~C~~a----------~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i~---g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRA----------KELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-VD---QKH 68 (85)
T ss_pred EEEEeCCCChhHHHH----------HHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-EC---CEE
Confidence 344456789999776 344443 33333334432 23334555454 37899986 45 554
Q ss_pred EEEecCCCChHHHHHHHHH
Q 021955 210 ICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 210 ~~~~~G~~~~~~~l~~L~~ 228 (305)
+ .| -+++.+.+.+
T Consensus 69 i---gg---~~~~~~~~~~ 81 (85)
T PRK11200 69 I---GG---CTDFEAYVKE 81 (85)
T ss_pred E---cC---HHHHHHHHHH
Confidence 3 23 3455554443
No 210
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=46.72 E-value=86 Score=21.38 Aligned_cols=48 Identities=4% Similarity=-0.028 Sum_probs=27.5
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCChh--HHHHHHhcCCCCCceEEE
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSE--GWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~e--g~~~~~~Y~~~~~P~i~I 201 (305)
..++|..|+... .+++++ .-+..++++... ...+.+.....++|++.+
T Consensus 6 ~~~~Cp~C~~~~----------~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 6 SKSTCPYCKRAK----------RLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred ECCCCHHHHHHH----------HHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 345899997763 344432 223344544432 345566667789998853
No 211
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.43 E-value=74 Score=22.91 Aligned_cols=49 Identities=2% Similarity=-0.068 Sum_probs=29.3
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
+.++|..|++. +.+++++ |...-+..+...-..+...+....+|.|. ++
T Consensus 7 ~~~~C~~C~ka----------~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~-i~ 58 (73)
T cd03027 7 SRLGCEDCTAV----------RLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIF-FN 58 (73)
T ss_pred ecCCChhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 34579989766 4555554 55444433333344566666778899994 44
No 212
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=46.17 E-value=65 Score=25.98 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHhh-ccEEEEEecCCChhHHHHHHhcCCC--C--CceEEEEeCCCCeeEEEecCCC-ChHHHHHHHH
Q 021955 163 AVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMD--S--IPAVLVIDPITGQKICSWCGMI-NPQPLGEMLL 227 (305)
Q Consensus 163 ~V~~~i~-~nFIfwq~~~ds~eg~~~~~~Y~~~--~--~P~i~IIdprTGe~~~~~~G~~-~~~~~l~~L~ 227 (305)
.|.+-.+ ..++|.-+|.+ +-....+++++. . +|.++|++. .+.+-. ..+.+ +++.+.+-+.
T Consensus 42 ~vAk~fk~gki~Fv~~D~~--~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~KY~-~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKE--DFSHELEEFGLDFSGGEKPVVAIRTA-KGKKYV-MEEEFSDVDALEEFLE 108 (111)
T ss_pred HHHHHCcCCeEEEEEEcHH--HHHHHHHHcCCCcccCCCCEEEEEeC-CCCccC-CCcccCCHHHHHHHHH
Confidence 3444445 35555544444 333478888885 4 999999995 342222 34445 5555443333
No 213
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=46.05 E-value=27 Score=23.59 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=16.7
Q ss_pred EEEeCCCCeeEEEe----cCCCChHHH
Q 021955 200 LVIDPITGQKICSW----CGMINPQPL 222 (305)
Q Consensus 200 ~IIdprTGe~~~~~----~G~~~~~~~ 222 (305)
.||||.||+++.+- .|.++++-.
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~ 38 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTA 38 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHH
Confidence 48999999999773 477776643
No 214
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=45.92 E-value=33 Score=32.68 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 9 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
+..+.-.+++ ||++.++|.++|+.++.++-.||-+....
T Consensus 234 dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 234 DRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 3445667788 99999999999999999999999988764
No 215
>PRK10329 glutaredoxin-like protein; Provisional
Probab=45.53 E-value=1.3e+02 Score=22.65 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=38.2
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCC-ChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHH
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDD-TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~d-s~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~ 221 (305)
..++|..|+.. +.+|.++ .-|--++++ .++.............|.|.| + + ..|.| ..++.
T Consensus 7 t~~~Cp~C~~a----------k~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~G-f~~~~ 68 (81)
T PRK10329 7 TRNDCVQCHAT----------KRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G---D---LSWSG-FRPDM 68 (81)
T ss_pred eCCCCHhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C---C---EEEec-CCHHH
Confidence 34689999765 4555553 333344555 344555555556678999964 3 2 23666 45666
Q ss_pred HHHHHH
Q 021955 222 LGEMLL 227 (305)
Q Consensus 222 ~l~~L~ 227 (305)
+.+...
T Consensus 69 l~~~~~ 74 (81)
T PRK10329 69 INRLHP 74 (81)
T ss_pred HHHHHH
Confidence 555443
No 216
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=44.53 E-value=28 Score=33.20 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 11 RISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 11 ~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
.+.-.+.+ ||++.++|.+.|+.++|++-.||-+....
T Consensus 238 a~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 238 AVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 34457788 99999999999999999999999988664
No 217
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=43.95 E-value=95 Score=23.36 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHHcC------CeEEEEeecCCCccchhhhhccC---CCHHHHHHhhccEEEEEecCCChhHHHHHHhcC
Q 021955 122 NGSFEKAKDAALAQD------KWLLVNLQSTKEFSSLMLNRDTW---GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN 192 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~------KwLLVniq~~~~f~c~~lnRDvw---~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~ 192 (305)
.-++.+|++..++.+ ++++| +.+...+---.-.+++. .+..+.++++.+++....+..-.+..+.....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v-vd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (109)
T cd04606 5 DWTVGEALEYLRRNADDPETIYYIYV-VDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEKYD 83 (109)
T ss_pred cCcHHHHHHHHHhccCcccceeEEEE-ECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcC
Confidence 346778887766554 23332 22223332111123332 234688888888777765444455555554443
Q ss_pred CCCCceEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021955 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEM 225 (305)
Q Consensus 193 ~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~ 225 (305)
.+++.|++. .|+. .|.++..++++.
T Consensus 84 ---~~~~~Vv~~-~~~~----~Gvit~~dll~~ 108 (109)
T cd04606 84 ---LLALPVVDE-EGRL----VGIITVDDVIDV 108 (109)
T ss_pred ---CceeeeECC-CCcE----EEEEEhHHhhhh
Confidence 466777874 3553 455666666543
No 218
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=43.58 E-value=40 Score=26.49 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=30.4
Q ss_pred EEEEeecCCCccchhhhhccCCCHHHHHHhhccEE-EEEecCC-ChhHHHHHH----hcCCCCCceEEEEe
Q 021955 139 LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFI-FWQEYDD-TSEGWKVCS----FYNMDSIPAVLVID 203 (305)
Q Consensus 139 LLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFI-fwq~~~d-s~eg~~~~~----~Y~~~~~P~i~IId 203 (305)
|.||-. ++|+.|.... ++++++=| |.-++++ .+++..+.. .....++|.| +|+
T Consensus 10 Vvvysk-~~Cp~C~~ak----------~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi~ 68 (99)
T TIGR02189 10 VVIFSR-SSCCMCHVVK----------RLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FVG 68 (99)
T ss_pred EEEEEC-CCCHHHHHHH----------HHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EEC
Confidence 445444 6899998774 35555422 2333444 455554433 3346799998 455
No 219
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=43.26 E-value=98 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=11.6
Q ss_pred ceEEEEeCCCCeeEEEecC
Q 021955 197 PAVLVIDPITGQKICSWCG 215 (305)
Q Consensus 197 P~i~IIdprTGe~~~~~~G 215 (305)
..+.+||| .|+.+..+++
T Consensus 156 ~~~~Lidp-~G~i~~~y~~ 173 (174)
T PF02630_consen 156 AFIYLIDP-DGRIRAIYNL 173 (174)
T ss_dssp SEEEEE-T-TSEEEEEECS
T ss_pred cEEEEEcC-CCcEEEEEcc
Confidence 56778887 5777766653
No 220
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=43.22 E-value=85 Score=24.54 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=53.4
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCc----cchhhhh-----------ccCCCHHHHHHhhccEEEEEecC---CCh
Q 021955 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEF----SSLMLNR-----------DTWGNEAVSQIISVNFIFWQEYD---DTS 182 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f----~c~~lnR-----------Dvw~n~~V~~~i~~nFIfwq~~~---ds~ 182 (305)
...+..+|++.-.+.+.+.++.+.+...+ .-.-+.+ ..|.+..|.++++.+++...... ...
T Consensus 8 ~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~ 87 (126)
T cd04640 8 ADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENA 87 (126)
T ss_pred CCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccC
Confidence 34577888877666665555555443332 1111211 24555668899988875543321 122
Q ss_pred hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHH
Q 021955 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGE 224 (305)
Q Consensus 183 eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~ 224 (305)
.....+....-..++++.|+|...|.. .|.++..+++.
T Consensus 88 ~l~~~l~~m~~~~~~~lpVvd~~~~~~----~G~it~~di~~ 125 (126)
T cd04640 88 SVGDVVETLKASGRQHALVVDREHHQI----RGIISTSDIAR 125 (126)
T ss_pred cHHHHHHHHHHCCCceEEEEECCCCEE----EEEEeHHHHhh
Confidence 223333333345678888998531342 36666666553
No 221
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=43.05 E-value=1.1e+02 Score=22.87 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=50.8
Q ss_pred ccccHHHHHHHHHHcC-CeEEEEeecCCCc----c---c-hhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhc
Q 021955 121 FNGSFEKAKDAALAQD-KWLLVNLQSTKEF----S---S-LMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY 191 (305)
Q Consensus 121 ~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f----~---c-~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y 191 (305)
...+..+|+....+.+ .++.| +.+...+ . + ..+....|.+..+.++++.+++....+..-.+..+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v-~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~- 85 (112)
T cd04624 8 PDTSIREAAKLMAEENVGSVVV-VDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRK- 85 (112)
T ss_pred CCCcHHHHHHHHHHcCCCEEEE-ECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHHHHHH-
Confidence 4557888887776554 34443 3332222 1 1 112222345557888888888876554433444444433
Q ss_pred CCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 192 ~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
...+.+.|++. +|.. .|.++..+++
T Consensus 86 --~~~~~~~Vv~~-~g~~----~Gilt~~dl~ 110 (112)
T cd04624 86 --NNIRHHLVVDK-GGEL----VGVISIRDLV 110 (112)
T ss_pred --cCccEEEEEcC-CCcE----EEEEEHHHhc
Confidence 34578888885 3653 3545555544
No 222
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=41.18 E-value=26 Score=28.32 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.6
Q ss_pred eecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcC----CCCCceEEE
Q 021955 143 LQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN----MDSIPAVLV 201 (305)
Q Consensus 143 iq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~----~~~~P~i~I 201 (305)
+..++|..|+.+ +.+|.+ ++-++.++..|.+ ++|.++-+.+. ..++|.|.|
T Consensus 19 fSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 19 FSKSSCPYCHRA-KELLSD------LGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EECCcCchHHHH-HHHHHh------CCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEE
Confidence 344789999996 445554 6667888888766 66666555443 368999885
No 223
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=41.09 E-value=56 Score=30.25 Aligned_cols=114 Identities=14% Similarity=0.237 Sum_probs=65.8
Q ss_pred hCCCccccccc----cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHH
Q 021955 113 YRPPFHVMFNG----SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188 (305)
Q Consensus 113 FrPP~~l~~~g----sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~ 188 (305)
|+|-|...|.. .|-+++.... .--.|+|-|+-+...-|..||+-+-|=.+ +|=.-.| ..+-..... ..
T Consensus 133 ~gp~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAA--eyP~vKF--ckikss~~g---as 204 (273)
T KOG3171|consen 133 FGPRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAA--EYPIVKF--CKIKSSNTG---AS 204 (273)
T ss_pred cCCccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhc--cCCceeE--EEeeecccc---ch
Confidence 67887766633 3555554321 22457778888899999999876533211 1111122 222111111 23
Q ss_pred HhcCCCCCceEEEEeCCCCeeEEEecCC---CChHHHHHHHHHHHhhCCCC
Q 021955 189 SFYNMDSIPAVLVIDPITGQKICSWCGM---INPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 189 ~~Y~~~~~P~i~IIdprTGe~~~~~~G~---~~~~~~l~~L~~fl~~~~~~ 236 (305)
..+..+..|+++|.. .|+.+..+... ..-+=|.-.|..||..|-+.
T Consensus 205 ~~F~~n~lP~LliYk--gGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 205 DRFSLNVLPTLLIYK--GGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhcccCCceEEEee--CCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 455678899999998 48876553211 12233567799999998775
No 224
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.07 E-value=36 Score=32.36 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 10 ~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
..+.-.+.+ ||++.++|++.|+.++|++-.||-+....
T Consensus 232 Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 232 RAVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 344557788 89999999999999999999999987653
No 225
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=39.37 E-value=1.6e+02 Score=24.03 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=48.8
Q ss_pred cCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCC----------hhHHHHHHhcCCCCCce-EEEEe
Q 021955 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT----------SEGWKVCSFYNMDSIPA-VLVID 203 (305)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds----------~eg~~~~~~Y~~~~~P~-i~IId 203 (305)
++|.|+|+--+.....-+.+ ++.+.+ .-..+...+.|++.+--+. .....+.+.|++..-.+ +++|+
T Consensus 9 ~~R~lvv~aps~~d~~~~~q-~~~L~~-~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQ-LEELQN-NRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred cCceEEEECCCCCCHHHHHH-HHHHHh-hhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 45666666544433222222 111111 2234455556666552221 23458888999754334 44455
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021955 204 PITGQKICSWCGMINPQPLGEMLLPFMDRSPR 235 (305)
Q Consensus 204 prTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~ 235 (305)
..|..-..|...++++++.. .+|..|.
T Consensus 87 -KDG~vK~r~~~p~~~~~lf~----~ID~MPm 113 (118)
T PF13778_consen 87 -KDGGVKLRWPEPIDPEELFD----TIDAMPM 113 (118)
T ss_pred -CCCcEEEecCCCCCHHHHHH----HHhCCcc
Confidence 56765556788888887544 4454443
No 226
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=38.86 E-value=72 Score=25.64 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=28.2
Q ss_pred HcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc----cEEEEEec
Q 021955 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEY 178 (305)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~----nFIfwq~~ 178 (305)
.+.|..++.+.+..|..|..+. +.+++++.+ +++|..+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~------~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA------PELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh------HHHHHHHHHCCCceEEEEeCC
Confidence 3568889999999999999984 566666543 45655443
No 227
>PRK13669 hypothetical protein; Provisional
Probab=38.81 E-value=56 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 021955 217 INPQPLGEMLLPFMDRSPR 235 (305)
Q Consensus 217 ~~~~~~l~~L~~fl~~~~~ 235 (305)
.+++++++.+..+|+++++
T Consensus 59 ~t~eeL~~kI~~~i~e~~~ 77 (78)
T PRK13669 59 ETPEELVENIYAHLEENPM 77 (78)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 6899999999999998764
No 228
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=38.70 E-value=1.1e+02 Score=22.64 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=30.5
Q ss_pred EeecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCC-hhHHHHHHhcCCCCCceEEEEe
Q 021955 142 NLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDT-SEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 142 niq~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds-~eg~~~~~~Y~~~~~P~i~IId 203 (305)
-+..++|..|... ++++.++ |... +++. .++..+...+...++|.|. |+
T Consensus 12 ly~~~~Cp~C~~a----------k~~L~~~gi~y~~i--di~~~~~~~~~~~~~g~~~vP~i~-i~ 64 (79)
T TIGR02190 12 VFTKPGCPFCAKA----------KATLKEKGYDFEEI--PLGNDARGRSLRAVTGATTVPQVF-IG 64 (79)
T ss_pred EEECCCCHhHHHH----------HHHHHHcCCCcEEE--ECCCChHHHHHHHHHCCCCcCeEE-EC
Confidence 3445689999776 3444443 4443 4433 3555666667788999996 44
No 229
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.13 E-value=18 Score=33.30 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=61.6
Q ss_pred CccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCC
Q 021955 116 PFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS 195 (305)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~ 195 (305)
+-.+.+++.| +.. .+|.++++++..|+-+|..|+ +| -..+..++ .|..|...+.+ +-..+++.|.+..
T Consensus 3 v~~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~-~v--~~~~~~~~-~~~~~~k~~a~--~~~eis~~~~v~~ 70 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMD-QV--FDHLAEYF-KNAQFLKLEAE--EFPEISNLIAVEA 70 (227)
T ss_pred ceeehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHH-HH--HHHHHHhh-hhheeeeehhh--hhhHHHHHHHHhc
Confidence 3345566666 333 789999999999999999995 22 12334444 56666655433 3335778888999
Q ss_pred CceEEEEeCCCCeeEEEecCCCCh
Q 021955 196 IPAVLVIDPITGQKICSWCGMINP 219 (305)
Q Consensus 196 ~P~i~IIdprTGe~~~~~~G~~~~ 219 (305)
-||..++. .|+.+....|...+
T Consensus 71 vp~~~~~~--~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 71 VPYFVFFF--LGEKVDRLSGADPP 92 (227)
T ss_pred Cceeeeee--cchhhhhhhccCcH
Confidence 99999986 37777777775443
No 230
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=36.96 E-value=1.1e+02 Score=29.10 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCChhHHHHHHhcCCCCCceEEEE
Q 021955 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (305)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~II 202 (305)
.|.+..+.-++...-+.+-+.++.|..+.. | .++++++.++- +++.-.+..|.+..++.+.-+-..-|.+.|=
T Consensus 169 ~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~--R----Q~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie 242 (281)
T PF02401_consen 169 KFEEIVEALKKRFPELEGPVFNTICYATQN--R----QEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIE 242 (281)
T ss_dssp HHHHHHHHHHHHSTCEE-SCC-S--CHHHH--H----HHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEES
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCHhHHH--H----HHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeC
Confidence 355666666777776666667776665543 2 56888887764 8888888999988877664333233666654
Q ss_pred eCC--------CCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 203 DPI--------TGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 203 dpr--------TGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
++. ..+.+..-.|..+|+.+++.+..+|++
T Consensus 243 ~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 243 TADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp SGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred CccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 331 123556667999999999999999875
No 231
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=36.30 E-value=60 Score=21.80 Aligned_cols=26 Identities=19% Similarity=-0.004 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021955 20 VGASGVTAIECLQATSWKLDEAILLF 45 (305)
Q Consensus 20 tg~~~~~A~~~Le~~~wdLe~Av~~f 45 (305)
-.....+=...|+.|+||+=.||..+
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 44556677789999999999999876
No 232
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.20 E-value=43 Score=31.91 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 10 ~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
..+.-.+.+ ||++.++|...|+.++|++-.||-+....
T Consensus 233 Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 233 RAVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 344557788 89999999999999999999999987653
No 233
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.06 E-value=1.4e+02 Score=21.27 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=29.9
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
..++|..|... ++++++ .|..+.++.+. ++..+...+...++|.| +|+
T Consensus 7 s~~~Cp~C~~a----------k~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 7 TKPGCPFCARA----------KAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred ECCCCHHHHHH----------HHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeE-EEC
Confidence 44689999776 444444 35555443333 45566666677899998 555
No 234
>smart00250 PLEC Plectin repeat.
Probab=34.76 E-value=16 Score=23.72 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.0
Q ss_pred CceEEEEeCCCCeeEEE
Q 021955 196 IPAVLVIDPITGQKICS 212 (305)
Q Consensus 196 ~P~i~IIdprTGe~~~~ 212 (305)
...-.||||.||+++.+
T Consensus 8 ~~~~Giidp~t~~~lsv 24 (38)
T smart00250 8 SAIGGIIDPETGQKLSV 24 (38)
T ss_pred hheeEEEcCCCCCCcCH
Confidence 45678999999998866
No 235
>PTZ00062 glutaredoxin; Provisional
Probab=34.07 E-value=1.9e+02 Score=26.14 Aligned_cols=81 Identities=6% Similarity=0.070 Sum_probs=43.1
Q ss_pred hHHHHhhhhCCCccccccccHHHHHHHHHHcCCeEEEEeec----CCCccchhhhhccCCCHHHHHHhhcc---EEEEEe
Q 021955 105 SHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQE 177 (305)
Q Consensus 105 ~~~~la~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~----~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~ 177 (305)
....+..++.++- .....+-+... -..+.|+|+..+ ++|..|+.+ +++++++ |..+-+
T Consensus 86 ~~~~~~~~~~~~~----~~~~~~~v~~l-i~~~~Vvvf~Kg~~~~p~C~~C~~~----------k~~L~~~~i~y~~~DI 150 (204)
T PTZ00062 86 LVSFIRGWAQKGS----SEDTVEKIERL-IRNHKILLFMKGSKTFPFCRFSNAV----------VNMLNSSGVKYETYNI 150 (204)
T ss_pred HHHHHHHHcCCCC----HHHHHHHHHHH-HhcCCEEEEEccCCCCCCChhHHHH----------HHHHHHcCCCEEEEEc
Confidence 3455556665432 11233333333 345677888775 467777655 5666663 444333
Q ss_pred cCCChhHHHHH-HhcCCCCCceEEE
Q 021955 178 YDDTSEGWKVC-SFYNMDSIPAVLV 201 (305)
Q Consensus 178 ~~ds~eg~~~~-~~Y~~~~~P~i~I 201 (305)
.. ..+++... ++..-.++|.|.|
T Consensus 151 ~~-d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 151 FE-DPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CC-CHHHHHHHHHHhCCCCCCeEEE
Confidence 32 34554443 3445578998884
No 236
>PHA03050 glutaredoxin; Provisional
Probab=32.96 E-value=1.2e+02 Score=24.24 Aligned_cols=54 Identities=6% Similarity=-0.086 Sum_probs=30.7
Q ss_pred eEEEEeecCCCccchhhhhccCCCHHHHHHhhcc------EEEEEecCC--ChhHH-HHHHhcCCCCCceEEEEe
Q 021955 138 WLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN------FIFWQEYDD--TSEGW-KVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 138 wLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n------FIfwq~~~d--s~eg~-~~~~~Y~~~~~P~i~IId 203 (305)
-|.||- .++|+.|... +++++++ |-.+.++.. ..+.+ .+.+...-.+.|.|. |+
T Consensus 14 ~V~vys-~~~CPyC~~a----------k~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If-I~ 76 (108)
T PHA03050 14 KVTIFV-KFTCPFCRNA----------LDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF-FG 76 (108)
T ss_pred CEEEEE-CCCChHHHHH----------HHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE-EC
Confidence 355554 4589999766 4566653 434444431 22323 344555667899994 44
No 237
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=32.65 E-value=21 Score=29.87 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCC
Q 021955 114 RPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM 193 (305)
Q Consensus 114 rPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~ 193 (305)
.|+-.+...|+ .|-+++|+.+- |..|||+ -+-|..|+.
T Consensus 19 mP~~~v~~eG~-----------~KTvi~Nf~dI----~~~L~R~---p~~~~ky~~------------------------ 56 (125)
T PF01873_consen 19 MPPPQVKIEGK-----------KKTVIVNFVDI----CKALNRD---PEHVLKYFG------------------------ 56 (125)
T ss_dssp CCT--EEEETS-----------TEEEETTHHHH----HHHHTSS---HHHHHHHHH------------------------
T ss_pred cCCCeEEEEcc-----------ceeeeecHHHH----HHHHCCC---HHHHHHHHH------------------------
Confidence 46666677776 78899998874 9999987 345555554
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~~ 236 (305)
..+=+-.-||.. |..+ +.|..+++.+-+.|..|++.|=+.
T Consensus 57 ~ELgt~~~id~~-~~li--i~G~~~~~~i~~~L~~fI~~yVlC 96 (125)
T PF01873_consen 57 KELGTQGSIDGK-GRLI--INGRFSSKQIQDLLDKFIKEYVLC 96 (125)
T ss_dssp HHSSSEEEEETT-TEEE--EESSSSCCHHHHHHHHHHCHHSSC
T ss_pred HHHCCceEECCC-CEEE--EEEecCHHHHHHHHHHHHHHEEEc
Confidence 122333456643 4433 578899999999999999998553
No 238
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=32.64 E-value=44 Score=30.36 Aligned_cols=96 Identities=11% Similarity=0.193 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCC
Q 021955 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT 206 (305)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprT 206 (305)
+++..-++..| +++-++-+.-+.|+.|++.+ -.--+.++...||=.. -..+.=+++++++..+|+|+++- .
T Consensus 76 df~~~~~kS~k-VVcHFY~~~f~RCKimDkhL--e~LAk~h~eTrFikvn----ae~~PFlv~kL~IkVLP~v~l~k--~ 146 (211)
T KOG1672|consen 76 DFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHL--EILAKRHVETRFIKVN----AEKAPFLVTKLNIKVLPTVALFK--N 146 (211)
T ss_pred HHHHHhhcCce-EEEEEEcCCCcceehHHHHH--HHHHHhcccceEEEEe----cccCceeeeeeeeeEeeeEEEEE--c
Confidence 34444444444 66777788889999997654 2223445555565442 23444577888899999999998 4
Q ss_pred CeeEEEecCCC---ChHHHHH-HHHHHHh
Q 021955 207 GQKICSWCGMI---NPQPLGE-MLLPFMD 231 (305)
Q Consensus 207 Ge~~~~~~G~~---~~~~~l~-~L~~fl~ 231 (305)
|..+-.+.|+. ..++|-. .|..-|-
T Consensus 147 g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 147 GKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred CEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 77777766763 2355643 3333343
No 239
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=32.51 E-value=24 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=17.7
Q ss_pred cchhhhhccCCCHHHHHHhhcc
Q 021955 150 SSLMLNRDTWGNEAVSQIISVN 171 (305)
Q Consensus 150 ~c~~lnRDvw~n~~V~~~i~~n 171 (305)
.-+.+-+.|++||+|++||++|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHHHcCHHHHHHHHHh
Confidence 4466778999999999999976
No 240
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=31.68 E-value=81 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=22.3
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021955 199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR 235 (305)
Q Consensus 199 i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~ 235 (305)
+++|+ |+.+. ..+++++++.+.++|++.++
T Consensus 48 FAlVn---G~~V~----A~t~eeL~~kI~~~i~e~~~ 77 (78)
T PF07293_consen 48 FALVN---GEIVA----AETAEELLEKIKEKIEENPM 77 (78)
T ss_pred cEEEC---CEEEe----cCCHHHHHHHHHHHHhcccC
Confidence 34455 55543 36899999999999998764
No 241
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=31.16 E-value=1.3e+02 Score=25.27 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=36.2
Q ss_pred cEEEEEecC---CChhHHHHHHhcCC--CCCceEEEEeCCCCeeEEEe--cCCCChHHHHHHHHHHHhhCC
Q 021955 171 NFIFWQEYD---DTSEGWKVCSFYNM--DSIPAVLVIDPITGQKICSW--CGMINPQPLGEMLLPFMDRSP 234 (305)
Q Consensus 171 nFIfwq~~~---ds~eg~~~~~~Y~~--~~~P~i~IIdprTGe~~~~~--~G~~~~~~~l~~L~~fl~~~~ 234 (305)
+.++-.+.+ ...+...++++|++ +.||.|.+.- -..+....+ .|.++.+ .|+.|+..++
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~-~~~~~pv~~p~~~~~t~~----~l~~fvk~~t 119 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFV-GDKEEPVRYPFDGDVTAD----NLQRFVKSNT 119 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEE-SSTTSEEEE-TCS-S-HH----HHHHHHHHTS
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEec-CCCCCCccCCccCCccHH----HHHHHHHhCC
Confidence 455555543 34577899999999 6799999887 334444555 5667665 4777877663
No 242
>PRK10638 glutaredoxin 3; Provisional
Probab=30.45 E-value=1.6e+02 Score=21.70 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=27.3
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCCChhHHHHHHhcCCCCCceEEEEe
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IId 203 (305)
..++|..|+.. +++++++ |...-++.+...-..+.+......+|.| +++
T Consensus 8 ~~~~Cp~C~~a----------~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i-~~~ 59 (83)
T PRK10638 8 TKATCPFCHRA----------KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI-FID 59 (83)
T ss_pred ECCCChhHHHH----------HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 34689988766 4455544 4443332222122355666667889988 444
No 243
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=77 Score=30.81 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred cCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEE--ec-CCCChHHHHHHHHHHHhhCC
Q 021955 178 YDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS--WC-GMINPQPLGEMLLPFMDRSP 234 (305)
Q Consensus 178 ~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~--~~-G~~~~~~~l~~L~~fl~~~~ 234 (305)
-+|..|+.++.+.+++++.||+.+..|.+|...+. +. +....+ .|.+.+|++...
T Consensus 109 ~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~--Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 109 MVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE--AEQIAQFVADRT 166 (331)
T ss_pred EEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh--HHHHHHHHHHhh
Confidence 46777899999999999999999999988876522 11 112333 677777777654
No 244
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=28.82 E-value=64 Score=34.40 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=36.7
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021955 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (305)
Q Consensus 8 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 50 (305)
..+.|...+++ |-+..+|++-|.++|+|+|.|++=+|.+.+
T Consensus 635 ~e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 635 DEESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred ChhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 45677788888 999999999999999999999999999865
No 245
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=28.26 E-value=1e+02 Score=24.44 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=20.6
Q ss_pred CceEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 196 ~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
-..|-|||..||+.+..+ .|+++|+....
T Consensus 67 ~~vVkViD~~T~eVIRqI----P~Ee~l~l~~~ 95 (107)
T PF03646_consen 67 RVVVKVIDKETGEVIRQI----PPEELLDLAKR 95 (107)
T ss_dssp EEEEEEEETTT-SEEEEE-----HHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEeC----CcHHHHHHHHH
Confidence 467889999999999985 57777765443
No 246
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=28.15 E-value=87 Score=31.62 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=41.0
Q ss_pred hhhhCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhh
Q 021955 110 ASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS 169 (305)
Q Consensus 110 a~lFrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~ 169 (305)
++.|+|-.+|+---++++|++.=.++.|+|..|+-+.+ ...|+++++
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n-------------~~~vkr~l~ 380 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNN-------------EKLVKRFLT 380 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCC-------------HHHHHHHHH
Confidence 57899999999999999999999999999999998862 556677776
No 247
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=28.03 E-value=1.6e+02 Score=22.00 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=52.8
Q ss_pred CccccccccHHHHHHHHHHcCCeEEEEeecCCCcc-------ch-hhhhccCCCHHHHHHhhccEEEEEecCCChhHHHH
Q 021955 116 PFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFS-------SL-MLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV 187 (305)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~-------c~-~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~ 187 (305)
+..+-...++.+|....++.+.+.++-+.. ..+- .. .++++ |.+..+.+++..+++++..+..-.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-LGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-cccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence 333344557888888877655433222222 2221 00 11221 23456888888888877655555667776
Q ss_pred HHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 188 ~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
...++. .++.|++ .|+.+ |.++..+++
T Consensus 82 ~~~~~~---~~~~V~~--~~~~~----Gvvt~~di~ 108 (110)
T cd04595 82 MVEHDI---GRVPVVE--DGRLV----GIVTRTDLL 108 (110)
T ss_pred HHHcCC---CeeEEEe--CCEEE----EEEEhHHhh
Confidence 666654 4566777 46644 444444443
No 248
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=27.37 E-value=2.1e+02 Score=25.66 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=46.1
Q ss_pred hccCCCHHHHHHhhcc----EEEEEecCCChhHHHHHHhcCC---------------CCCceEEEEeCCCCeeEEEecCC
Q 021955 156 RDTWGNEAVSQIISVN----FIFWQEYDDTSEGWKVCSFYNM---------------DSIPAVLVIDPITGQKICSWCGM 216 (305)
Q Consensus 156 RDvw~n~~V~~~i~~n----FIfwq~~~ds~eg~~~~~~Y~~---------------~~~P~i~IIdprTGe~~~~~~G~ 216 (305)
||+ -+.+++|...+ |+++-. +......+++.|++ ..-..+.+||| .|+.+..+.+.
T Consensus 116 rDt--p~~lk~Y~~~~~~~~~~~ltg--~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~-~G~~~~~~~~~ 190 (207)
T COG1999 116 RDT--PEVLKKYAELNFDPRWIGLTG--TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA-DGRFLGTYDYG 190 (207)
T ss_pred CCC--HHHHHHHhcccCCCCeeeeeC--CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC-CCeEEEEecCC
Confidence 555 44556777622 333332 23344556665554 33467888998 59988887765
Q ss_pred CChHHHHHHHHHHHhh
Q 021955 217 INPQPLGEMLLPFMDR 232 (305)
Q Consensus 217 ~~~~~~l~~L~~fl~~ 232 (305)
-.|+.+++.|+..+..
T Consensus 191 ~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 191 EPPEEIAADLKKLLKE 206 (207)
T ss_pred CChHHHHHHHHHHhhc
Confidence 5699999999988764
No 249
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=27.26 E-value=82 Score=25.71 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=45.3
Q ss_pred CeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCC
Q 021955 137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM 216 (305)
Q Consensus 137 KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~ 216 (305)
|-+++|+.+- |..|||+ .+-|.+|+-..+ =+-.-||.. |. ..+.|.
T Consensus 18 kTvi~Nf~~I----~~~L~R~---p~hv~kyl~~EL------------------------gt~g~id~~-~r--lii~G~ 63 (110)
T smart00653 18 KTVIVNFADI----AKALNRP---PDHVLKFLLAEL------------------------GTQGSIDGK-GR--LIVNGR 63 (110)
T ss_pred eEEEEcHHHH----HHHHCCC---HHHHHHHHHHHh------------------------CCceeECCC-Ce--EEEEEe
Confidence 8899998874 9999986 455666654221 122234432 33 335788
Q ss_pred CChHHHHHHHHHHHhhCCCC
Q 021955 217 INPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 217 ~~~~~~l~~L~~fl~~~~~~ 236 (305)
.++..+-+.|..|+++|=+.
T Consensus 64 ~~~~~i~~~l~~yI~~yVlC 83 (110)
T smart00653 64 FTPKKLQDLLRRYIKEYVLC 83 (110)
T ss_pred eCHHHHHHHHHHHHHhcEEC
Confidence 89999999999999998543
No 250
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=26.57 E-value=2.5e+02 Score=26.94 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
..|.+..+..++...=+-|...++-|...+. ..+++.++.++ ..++.-....|.+..++.+.-+-..-|++.|
T Consensus 169 ~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~I 242 (298)
T PRK01045 169 DDTAEIIAALKERFPEIQGPPKDDICYATQN------RQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLI 242 (298)
T ss_pred HHHHHHHHHHHHhCcCcccCCCCCcchhhHH------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3455555555554333333234554444322 25678888876 4788888888888887665333222344443
Q ss_pred EeC--------CCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021955 202 IDP--------ITGQKICSWCGMINPQPLGEMLLPFMDRS 233 (305)
Q Consensus 202 Idp--------rTGe~~~~~~G~~~~~~~l~~L~~fl~~~ 233 (305)
=++ ..-+.+.+-.|..+|+.+++.+..+|...
T Consensus 243 e~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 243 DDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred CChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 221 11234555678999999999999999875
No 251
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=26.29 E-value=2e+02 Score=21.52 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHcCC-eEEEEeecCCCccchhh-hhccC---CCHHHHHHhhccEEEEEecCCChhHHHHHHhcCCCCC
Q 021955 122 NGSFEKAKDAALAQDK-WLLVNLQSTKEFSSLML-NRDTW---GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSI 196 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~~K-wLLVniq~~~~f~c~~l-nRDvw---~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~ 196 (305)
..+..+|+....+.+. +++| +.....+ +-.+ .+++. .+..+.+++..++++...+..-.+..+....++..
T Consensus 10 ~~~~~~a~~~~~~~~~~~~~V-~d~~~~~-~G~v~~~~l~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-- 85 (108)
T cd04596 10 TDTVKDWHELNKETGHSRFPV-VDEKNKV-VGIVTSKDVAGKDPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIE-- 85 (108)
T ss_pred CCCHHHHHHHHHHcCCCceeE-ECCCCeE-EEEecHHHHhcccccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCC--
Confidence 4467888877766554 3333 3222222 1111 11111 24568999988888877666666777777666654
Q ss_pred ceEEEEeCCCCeeEEEecCCCChHHHH
Q 021955 197 PAVLVIDPITGQKICSWCGMINPQPLG 223 (305)
Q Consensus 197 P~i~IIdprTGe~~~~~~G~~~~~~~l 223 (305)
.+.|++. .|+. -|.++..+++
T Consensus 86 -~~~Vv~~-~~~~----~G~it~~di~ 106 (108)
T cd04596 86 -MLPVVDD-NKKL----LGIISRQDVL 106 (108)
T ss_pred -eeeEEcC-CCCE----EEEEEHHHhh
Confidence 4456774 4553 3445555543
No 252
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=1.9e+02 Score=24.41 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeec--------CCCccchhhhhccCCCHHHHHHhh---ccEEEEEecCCC
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQS--------TKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDT 181 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~--------~~~f~c~~lnRDvw~n~~V~~~i~---~nFIfwq~~~ds 181 (305)
.+|++.++.=.+..+ |+|++.+ +||.+|-.= -|.|-+-++ ++..|..+++.+
T Consensus 13 e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~A------EPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 13 ESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVAA------EPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHHh------hHHHHHHHHhCCCceEEEEEEecC
Confidence 457777766555556 9999887 478888654 566666666 445555555554
No 253
>PRK10824 glutaredoxin-4; Provisional
Probab=25.92 E-value=3.6e+02 Score=22.07 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCeEEEEeec----CCCccchhhhhccCCCHHHHHHhhc---cEEEEEecCCChhHHHH-HHhcCCCCCce
Q 021955 127 KAKDAALAQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKV-CSFYNMDSIPA 198 (305)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~----~~~f~c~~lnRDvw~n~~V~~~i~~---nFIfwq~~~ds~eg~~~-~~~Y~~~~~P~ 198 (305)
+.++..-++ ..|+|+..+ ++|+.|.... +++++ .|-.+-++.+ ++-+.. .+.-+-.++|-
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak----------~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQ 73 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAV----------QALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQ 73 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHH----------HHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCe
Confidence 334444444 456666766 5899998764 33332 3444444332 333333 33335578999
Q ss_pred EEE
Q 021955 199 VLV 201 (305)
Q Consensus 199 i~I 201 (305)
|.|
T Consensus 74 IFI 76 (115)
T PRK10824 74 LWV 76 (115)
T ss_pred EEE
Confidence 884
No 254
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=25.75 E-value=3.4e+02 Score=27.09 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhcc---EEEEEecCC------ChhHHHHHHhcCCCC
Q 021955 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDD------TSEGWKVCSFYNMDS 195 (305)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~n---FIfwq~~~d------s~eg~~~~~~Y~~~~ 195 (305)
.-+++++||+++|-..|=+...+ +-+.|+++|+.+ ||-.|++.- ..+|.+++......
T Consensus 132 ~~df~~kak~eGkIr~~GFSfHg------------s~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~g- 198 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGFSFHG------------STEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLG- 198 (391)
T ss_pred hHHHHHHHHhcCcEEEeeecCCC------------CHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCc-
Confidence 56789999999987766655432 356667777764 444444322 14788899887753
Q ss_pred CceEEEEeCCC
Q 021955 196 IPAVLVIDPIT 206 (305)
Q Consensus 196 ~P~i~IIdprT 206 (305)
|.|+.|..
T Consensus 199 ---I~IMeP~~ 206 (391)
T COG1453 199 ---IFIMEPLD 206 (391)
T ss_pred ---EEEEeeCC
Confidence 45666654
No 255
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=24.91 E-value=92 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 021955 24 GVTAIECLQATSWKLDEAILLFFAV 48 (305)
Q Consensus 24 ~~~A~~~Le~~~wdLe~Av~~ff~~ 48 (305)
-+.|..+|+..|=++..||.+||..
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~q 37 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQ 37 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4689999999999999999999985
No 256
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.53 E-value=92 Score=19.82 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=14.4
Q ss_pred eEEEEeCCCCeeEEEec
Q 021955 198 AVLVIDPITGQKICSWC 214 (305)
Q Consensus 198 ~i~IIdprTGe~~~~~~ 214 (305)
+|.-||.+||+.++.+.
T Consensus 11 ~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 11 YLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEEETTTTSEEEEEE
T ss_pred EEEEEECCCCCEEEeee
Confidence 67889999999998854
No 257
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.58 E-value=2.3e+02 Score=21.04 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCCccccccccHHHHHHHHHHcCC-eEEEEeecCCCcc----chhhhhcc-CCCHHHHHHhhccEEEEEecCCChhHHHH
Q 021955 114 RPPFHVMFNGSFEKAKDAALAQDK-WLLVNLQSTKEFS----SLMLNRDT-WGNEAVSQIISVNFIFWQEYDDTSEGWKV 187 (305)
Q Consensus 114 rPP~~l~~~gsf~~A~~~Ak~~~K-wLLVniq~~~~f~----c~~lnRDv-w~n~~V~~~i~~nFIfwq~~~ds~eg~~~ 187 (305)
+++..+-..-+..+|++..++.+. +++|- .+...+. -..+-+-+ .....+.+++..+++....+..-.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVV-DEDGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEE-CCCCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 455555566688999988766553 44332 2222221 11110100 01123777777777765544333455555
Q ss_pred HHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHH
Q 021955 188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPL 222 (305)
Q Consensus 188 ~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~ 222 (305)
.... ....+.|++. .|+.+ |.++..++
T Consensus 81 ~~~~---~~~~~~Vv~~-~~~~~----G~v~~~di 107 (110)
T cd04605 81 MERH---NISALPVVDA-ENRVI----GIITSEDI 107 (110)
T ss_pred HHHh---CCCEEeEECC-CCcEE----EEEEHHHh
Confidence 5443 3455666774 35533 44444443
No 258
>PRK07738 flagellar protein FlaG; Provisional
Probab=23.25 E-value=1.6e+02 Score=24.42 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 195 ~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
.-+.|-|||..||+.+.. +.|+++|+.+...-+
T Consensus 75 ~~~vVkVvD~~T~EVIRQ----IPpEe~L~l~~~m~e 107 (117)
T PRK07738 75 NEYYVQVVDERTNEVIRE----IPPKKLLDMYAAMME 107 (117)
T ss_pred CcEEEEEEECCCCeeeee----CCCHHHHHHHHHHHH
Confidence 357899999999999988 568888776665543
No 259
>PRK08452 flagellar protein FlaG; Provisional
Probab=23.23 E-value=1.5e+02 Score=24.77 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=24.9
Q ss_pred CceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 196 ~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
-++|-|+|..||+.+.. +.|+++++.+..+-+
T Consensus 83 ~~vVkVvD~~T~eVIRq----IP~Ee~L~l~~~m~e 114 (124)
T PRK08452 83 GLVVSVKEANGGKVIRE----IPSKEAIELMEYMRD 114 (124)
T ss_pred cEEEEEEECCCCceeee----CCCHHHHHHHHHHHH
Confidence 47899999999999988 568888776655443
No 260
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=22.75 E-value=2.3e+02 Score=20.25 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=33.7
Q ss_pred ecCCCccchhhhhccCCCHHHHHHhhcc-EEEEEecCCC-hhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHH
Q 021955 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT-SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (305)
Q Consensus 144 q~~~~f~c~~lnRDvw~n~~V~~~i~~n-FIfwq~~~ds-~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~ 221 (305)
..++|..|+.. +++|.++ .=|-.++++. ++.............|.|. ++ |. ..|.| .+|+.
T Consensus 5 ~~~~Cp~C~~a----------k~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~-~~---g~--~~~~G-~~~~~ 67 (72)
T TIGR02194 5 SKNNCVQCKMT----------KKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIV-AD---GD--LSWSG-FRPDK 67 (72)
T ss_pred eCCCCHHHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEE-EC---CC--cEEec-cCHHH
Confidence 34578888665 4555553 2233334443 3344444444667899974 44 33 23666 45655
Q ss_pred HH
Q 021955 222 LG 223 (305)
Q Consensus 222 ~l 223 (305)
+.
T Consensus 68 ~~ 69 (72)
T TIGR02194 68 LK 69 (72)
T ss_pred HH
Confidence 43
No 261
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=22.57 E-value=2e+02 Score=23.46 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021955 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (305)
Q Consensus 183 eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~ 228 (305)
...+.+..+++...|++.| .|+.+ .|..++++|.+.|.+
T Consensus 124 ~~~~~~~~~~i~~tPt~~i----nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 124 ADSQLARQLGITGTPTFFI----NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHHT-SSSSEEEE----TTCEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccEEEE----CCEEe---CCCCCHHHHHHHHcC
No 262
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=22.45 E-value=1.9e+02 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021955 185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (305)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L 226 (305)
.+++..+++...|++.| + |+ .+.|..+.+.+.+.|
T Consensus 119 ~~~~~~~gi~gtPt~~v-~---g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFII-G---DT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEE-C---CE---EecCCCCHHHHHHHh
Confidence 46677889999999775 3 54 468888888877655
No 263
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=22.20 E-value=3.2e+02 Score=27.40 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHc----CCeEEEEeecC-CCccchhhhhcc---CCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCC
Q 021955 122 NGSFEKAKDAALAQ----DKWLLVNLQST-KEFSSLMLNRDT---WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM 193 (305)
Q Consensus 122 ~gsf~~A~~~Ak~~----~KwLLVniq~~-~~f~c~~lnRDv---w~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~ 193 (305)
.-+..+|++.-++. ...-.+++.+. ..+---.--||+ ..+..|.++++.+++....+.+-.+..+....|+
T Consensus 147 ~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~- 225 (449)
T TIGR00400 147 DYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYD- 225 (449)
T ss_pred CCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcC-
Confidence 45788888877641 22223444333 322211111333 2455799999988877766666677877777774
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~f 229 (305)
+..+.|+|. .|+ ..|.++.+++++.+.+-
T Consensus 226 --~~~lpVVD~-~g~----lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 226 --FLAVPVVDN-EGR----LVGIVTVDDIIDVIQSE 254 (449)
T ss_pred --CCEEeEEcC-CCe----EEEEEEHHHHHHHHHhh
Confidence 556667785 454 35778888888777653
No 264
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=21.80 E-value=1.1e+02 Score=25.79 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCCccccccccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhccEEEEEecCCChhHHHHHHhcCC
Q 021955 114 RPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM 193 (305)
Q Consensus 114 rPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~ 193 (305)
.||-.++..| +|-+++|+.+- |..|||+ .+-|.+|+-..+ .
T Consensus 25 mP~~~v~~eG------------~kTvi~Nf~~I----a~~L~R~---~~~v~ky~~~EL-------------------g- 65 (133)
T TIGR00311 25 VPKAYIVIEG------------NRTIIQNFREV----AKALNRD---EQHLLKYLLKEL-------------------G- 65 (133)
T ss_pred CCCceEEEEc------------CcEEEecHHHH----HHHHCCC---HHHHHHHHHHHh-------------------C-
Confidence 3656666666 28899998874 9999986 455555554221 0
Q ss_pred CCCceEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021955 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (305)
Q Consensus 194 ~~~P~i~IIdprTGe~~~~~~G~~~~~~~l~~L~~fl~~~~~~ 236 (305)
+-.-|+ +|. ..+.|..++..+-+.|..|+++|=+.
T Consensus 66 ----t~g~i~--~~r--lii~G~~~~~~i~~~L~~yI~~yVlC 100 (133)
T TIGR00311 66 ----TAGNLE--GGR--LILQGKFTHFLLNERIEDYVRKYVIC 100 (133)
T ss_pred ----CCceec--CCE--EEEEeecCHHHHHHHHHHHHhheEEC
Confidence 111123 343 33578899999999999999998543
No 265
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.78 E-value=4e+02 Score=25.35 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCccchhhhhccCCCHHHHHHhhc-cEEEEEecCCChhHHHHHHhcCCCCCceEEE
Q 021955 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (305)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~n~~V~~~i~~-nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~I 201 (305)
..|.+....-++...=+.+ .++.|...+. ..++++++.++ .+++.-....|.+..++.+.-.-..-|++.|
T Consensus 170 ~~~~~iv~~l~~~~~~~~v--~~TIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~I 241 (281)
T PRK12360 170 ELWEDILNVIKLKSKELVF--FNTICSATKK------RQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHI 241 (281)
T ss_pred HHHHHHHHHHHHhCccccc--CCCcchhhhh------HHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3355555555554433322 3444443322 25678888875 4778878888888887665332222344444
Q ss_pred EeCC--------CCeeEEEecCCCChHHHHHHHHHHHhh
Q 021955 202 IDPI--------TGQKICSWCGMINPQPLGEMLLPFMDR 232 (305)
Q Consensus 202 Idpr--------TGe~~~~~~G~~~~~~~l~~L~~fl~~ 232 (305)
=++. .-..+..-.|..+|+.+++.+..+|+.
T Consensus 242 e~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 242 ETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred CChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 3321 112355567899999999999999864
No 266
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.40 E-value=5.5e+02 Score=24.38 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=50.0
Q ss_pred CHHHHHHhhc-cEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCC--------CCeeEEEecCCCChHHHHHHHHHHHh
Q 021955 161 NEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI--------TGQKICSWCGMINPQPLGEMLLPFMD 231 (305)
Q Consensus 161 n~~V~~~i~~-nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdpr--------TGe~~~~~~G~~~~~~~l~~L~~fl~ 231 (305)
.+++.++.++ ..++.-....|.+..++.+.-.-..-|++.|=++. ..+.+..-.|..+|+.+++.+..+|+
T Consensus 199 Q~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 199 QDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred HHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 5688888875 47778788889888877654333334555543321 12345556789999999999999987
Q ss_pred h
Q 021955 232 R 232 (305)
Q Consensus 232 ~ 232 (305)
.
T Consensus 279 ~ 279 (280)
T TIGR00216 279 E 279 (280)
T ss_pred h
Confidence 5
No 267
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=20.35 E-value=5e+02 Score=21.45 Aligned_cols=60 Identities=15% Similarity=0.361 Sum_probs=39.6
Q ss_pred HHHHHhhccEEEEEecCCChhHHHHHHhcCCCCCceEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHHhhC
Q 021955 163 AVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFMDRS 233 (305)
Q Consensus 163 ~V~~~i~~nFIfwq~~~ds~eg~~~~~~Y~~~~~P~i~IIdprTGe~~~~~~G~-~~~~~~l~~L~~fl~~~ 233 (305)
.+.+-++.++.|+... ...++..|++.. |.|++.-+ .++....+.|. .+.++ |..|+..+
T Consensus 14 ~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~-~~~~~~~y~~~~~~~~~----l~~fI~~~ 74 (184)
T PF13848_consen 14 EAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKK-FDEKPVVYDGDKFTPEE----LKKFIKKN 74 (184)
T ss_dssp HHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEEC-TTTSEEEESSSTTSHHH----HHHHHHHH
T ss_pred HHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEecc-CCCCceecccccCCHHH----HHHHHHHh
Confidence 3455556667777663 233777798887 99999986 34456667886 56665 66666544
No 268
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=20.20 E-value=83 Score=23.97 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=22.1
Q ss_pred hhCCCccccccccHHHHHHHHHH----cCCeEEEEeec
Q 021955 112 LYRPPFHVMFNGSFEKAKDAALA----QDKWLLVNLQS 145 (305)
Q Consensus 112 lFrPP~~l~~~gsf~~A~~~Ak~----~~KwLLVniq~ 145 (305)
-|.-..++.|.|+|.+|+..--+ .++.|-|.++.
T Consensus 34 dy~i~~~~~~~gsf~~Av~~l~~~~~~~~~~l~~~~y~ 71 (84)
T PF10671_consen 34 DYPIDAPATFSGSFEDAVKQLFSAYNSAGYPLQVCFYQ 71 (84)
T ss_dssp --B--CCCCC-E-HHHHHHHHHHHHGGGTEEEEEETTE
T ss_pred CEEecCceEecCcHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 35566677899999999887644 58899988885
Done!