BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021956
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEGI E E++KWFVK GDE+ E LC VQ+DKA +EI S KGKV ++L G +
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSEN--------------------SPDSK 193
VG+TL+ L PG EN S + K
Sbjct: 67 ATVGQTLITL------------------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 194 LNKDTVGG------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
++ V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 109 VDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 163
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 73.9 bits (180), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEGI E E++KWFVK GDE+ E LC VQ+DKA +EI S KGKV ++L G +
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 154 VKVGETLLKL 163
VG+TL+ L
Sbjct: 66 ATVGQTLITL 75
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
+V L+ GEGI E + +W+VKEGD + +F +C VQSDKA++ ITSRY G + +L +
Sbjct: 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 63
Query: 149 APGNIVKVGETLLKL 163
+I VG+ L+ +
Sbjct: 64 NLDDIAYVGKPLVDI 78
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEG+ E E+++W VKEGD +E+ Q L V +DK T++I S +GK+ ++L+ G +
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 154 VKVGETLLKL 163
V VG TLL++
Sbjct: 66 VPVGSTLLQI 75
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LATP VRNLA I L +V +GKDGR+LKED+L Y
Sbjct: 9 LATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNY 45
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA----DGPSTA 252
LATP VR LA I L +V +GKDGR+LKED+L Y ++ A GPS+
Sbjct: 16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGPSSG 70
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LATP VR LA I L +V +GKDGR+LKED+L Y
Sbjct: 9 LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNY 45
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGET 159
+ E ++KW KEG+ + LC +++DKA + + + G +A+++ G+ +++G +
Sbjct: 15 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-S 73
Query: 160 LLKLVV------------GDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLA--- 204
L+ L+V D P P S E P + S + K+ + G L
Sbjct: 74 LIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQIS--IPVKKEHIPGTLRFRL 131
Query: 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
+P RN+ + + ++ ATG G KED LK
Sbjct: 132 SPAARNILEKHSLDASQGTATGPRGIFTKEDALKL 166
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 41
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 35
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 6 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 40
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 6 VIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDI 40
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 13 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 47
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 35
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 1 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 34
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
+D+ E IA+ + W K G+ ++ + + +++DK +E+ + G +A+++
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 150 PGNIVKVGETLLKLVVG 166
G+ V GE L KL G
Sbjct: 62 EGDTVLSGELLGKLTEG 78
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
G E E+ + VK GD++ Q L V+ DKA++E+ + + G V +L G+ VK G
Sbjct: 11 GGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSL 70
Query: 160 LLKLVVGDSA 169
++ V +A
Sbjct: 71 IMIFEVEGAA 80
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGET 159
+ E ++KW KEG+ + LC +++DKA + + + G +A+++ G+ +++G +
Sbjct: 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-S 77
Query: 160 LLKLVV 165
L+ L+V
Sbjct: 78 LIGLIV 83
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 105 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161
E+ + VK GD++ Q L V+ DKA++E+ + + G V +L G+ VK G ++
Sbjct: 12 EVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM 68
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 35.4 bits (80), Expect = 0.037, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
L K VK GD+IE+ Q + ++S K I I + G V ++ G+ V G+ LL+L
Sbjct: 10 LWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 35.0 bits (79), Expect = 0.050, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
V A P R LAK GI+L V TG G + EDV +YA
Sbjct: 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYA 43
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 196 KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVS 255
+D GG T R + +L G LYD+DA+ L+ VL+Y Q+ A VS
Sbjct: 2 EDQKGGAAYTDRDRKILQLCG-ELYDLDASS-----LQLKVLQYLQQETRASRCCLLLVS 55
Query: 256 AD-----CR---EQLLGEEETYPQTFAEVKWYPDDKTVPLR 288
D C+ +++LGEE ++P T + D K++ L+
Sbjct: 56 EDNLQLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLK 96
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
A P++R LA+ G++L + TG GR+ +EDV + A
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LA P L + G++ +V TG GR+LKEDV+++
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 151
VPL + + +W KEGD+I E + V++DKAT+ S + +A++L A G
Sbjct: 10 VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 152 N 152
Sbjct: 70 T 70
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
+LA P R LA+ GI + +V +G GRV EDV YA
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147
G + PLA T + K VKEGD ++ Q + +++ K EI + GKV ++L
Sbjct: 16 GEIPAPLAGT--------VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 67
Query: 148 HAPGNIVKVGETLLKL 163
+ V+ G+ L+K+
Sbjct: 68 VKERDAVQGGQGLIKI 83
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
++K V+ G E++E Q LC +++ K + + KG VA++ + GN + V + +++
Sbjct: 623 IVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147
G + PLA T + K VKEGD ++ Q + +++ K EI + GKV ++L
Sbjct: 9 GEIPAPLAGT--------VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 148 HAPGNIVKVGETLLKL 163
+ V+ G+ L+K+
Sbjct: 61 VKERDAVQGGQGLIKI 76
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
VD+ + E +A+ + W K GD + + L +++DK +E+ + G + +L
Sbjct: 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 150 PGNIVKVGETLLKLVVGD 167
G V + L +L G+
Sbjct: 63 EGTTVTSRQILGRLREGN 80
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 31.2 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246
V A P R LAK GI+ V TG G + EDV ++A + A
Sbjct: 5 VAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRWAEETAKA 49
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSAD-----CR---E 260
R + +L G L+D+DAT L+ VL+Y Q+ A VS D C+ +
Sbjct: 14 RKILQLCG-ELFDLDATS-----LQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGD 67
Query: 261 QLLGEEETYPQTFAEVKWYPDDK 283
++LGEE ++P T + +DK
Sbjct: 68 KVLGEEVSFPLTMGRLGQVVEDK 90
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164
GD +E + +++ K + + + GKV ++LH G++V+ G+ + +V
Sbjct: 1186 GDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
VK GD + E Q +C +++ K +T+ G V + G+ V G+ L++L
Sbjct: 41 VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 115 DEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
DE+ +P C +Q D+AT +T +A + A G++ GET
Sbjct: 98 DELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGET 142
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152
+W K G+++ E L +++DKATI + +G +A++L G
Sbjct: 28 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 72
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152
+W K G+++ E L +++DKATI + +G +A++L G
Sbjct: 46 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,331,363
Number of Sequences: 62578
Number of extensions: 375817
Number of successful extensions: 797
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 41
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)