Query 021956
Match_columns 305
No_of_seqs 316 out of 1952
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0558 Dihydrolipoamide trans 100.0 6.1E-39 1.3E-43 303.6 13.4 213 2-244 1-213 (474)
2 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.1E-30 4.5E-35 254.9 16.9 153 89-243 2-154 (404)
3 PRK05704 dihydrolipoamide succ 100.0 7.2E-29 1.6E-33 244.3 18.5 150 90-241 3-152 (407)
4 TIGR01347 sucB 2-oxoglutarate 100.0 1.6E-28 3.5E-33 241.5 18.1 150 90-241 1-150 (403)
5 PLN02528 2-oxoisovalerate dehy 100.0 6.7E-27 1.5E-31 230.9 20.4 150 92-242 1-150 (416)
6 KOG0557 Dihydrolipoamide acety 99.9 2.6E-27 5.6E-32 231.9 16.8 158 87-244 36-216 (470)
7 PLN02744 dihydrolipoyllysine-r 99.9 7E-27 1.5E-31 236.3 19.3 167 71-241 98-288 (539)
8 TIGR02927 SucB_Actino 2-oxoglu 99.9 5.3E-27 1.1E-31 240.4 18.2 154 89-242 135-317 (590)
9 TIGR01348 PDHac_trf_long pyruv 99.9 1.2E-26 2.6E-31 236.0 20.0 152 89-241 116-284 (546)
10 TIGR01349 PDHac_trf_mito pyruv 99.9 5.2E-26 1.1E-30 225.7 19.2 151 92-242 2-179 (435)
11 PRK11854 aceF pyruvate dehydro 99.9 4.7E-26 1E-30 235.2 18.2 153 88-242 205-368 (633)
12 PRK11856 branched-chain alpha- 99.9 2.5E-25 5.4E-30 218.9 19.6 153 90-242 3-165 (411)
13 PRK11855 dihydrolipoamide acet 99.9 2.1E-25 4.5E-30 226.9 18.9 154 88-242 118-283 (547)
14 PLN02226 2-oxoglutarate dehydr 99.8 1.1E-18 2.4E-23 174.0 16.7 92 73-167 78-169 (463)
15 PRK14875 acetoin dehydrogenase 99.8 1.4E-18 2.9E-23 164.4 11.7 117 89-233 2-118 (371)
16 PTZ00144 dihydrolipoamide succ 99.8 3.6E-18 7.8E-23 168.8 13.1 81 87-167 42-122 (418)
17 PF00364 Biotin_lipoyl: Biotin 99.7 6.5E-18 1.4E-22 129.1 8.8 74 90-163 1-74 (74)
18 PRK06748 hypothetical protein; 99.6 2E-15 4.3E-20 118.5 9.5 63 103-165 12-75 (83)
19 PRK05889 putative acetyl-CoA c 99.5 3.4E-14 7.4E-19 107.6 9.1 62 103-164 10-71 (71)
20 KOG0559 Dihydrolipoamide succi 99.5 9E-15 2E-19 140.2 7.0 79 89-167 72-150 (457)
21 PRK11892 pyruvate dehydrogenas 99.5 1.8E-13 3.9E-18 137.3 13.0 78 90-167 3-81 (464)
22 cd06663 Biotinyl_lipoyl_domain 99.5 1.8E-13 3.9E-18 103.2 9.6 72 92-163 2-73 (73)
23 COG0511 AccB Biotin carboxyl c 99.5 1E-13 2.3E-18 118.5 7.9 62 103-164 78-139 (140)
24 PRK11854 aceF pyruvate dehydro 99.4 4.3E-13 9.4E-18 139.2 11.0 75 90-166 3-77 (633)
25 PRK08225 acetyl-CoA carboxylas 99.4 6.4E-13 1.4E-17 100.0 8.7 62 103-164 9-70 (70)
26 TIGR02927 SucB_Actino 2-oxoglu 99.4 9.4E-13 2E-17 135.7 10.8 76 90-165 3-78 (590)
27 PRK06549 acetyl-CoA carboxylas 99.3 5.6E-12 1.2E-16 106.8 9.0 61 103-163 69-129 (130)
28 PRK11855 dihydrolipoamide acet 99.3 7.7E-12 1.7E-16 127.9 11.1 76 90-166 3-78 (547)
29 PF02817 E3_binding: e3 bindin 99.3 1.8E-12 3.9E-17 88.1 4.2 38 201-238 2-39 (39)
30 PRK07051 hypothetical protein; 99.3 2.5E-11 5.4E-16 94.2 9.7 69 90-164 4-79 (80)
31 cd06850 biotinyl_domain The bi 99.3 2.3E-11 5.1E-16 88.7 9.0 62 102-163 6-67 (67)
32 TIGR01348 PDHac_trf_long pyruv 99.3 1.4E-11 3E-16 126.0 10.4 75 91-166 2-76 (546)
33 PRK05641 putative acetyl-CoA c 99.3 1.5E-11 3.2E-16 106.9 8.7 61 103-163 92-152 (153)
34 cd06849 lipoyl_domain Lipoyl d 99.2 1.2E-10 2.5E-15 84.1 10.5 73 91-163 2-74 (74)
35 PLN02983 biotin carboxyl carri 99.2 3.9E-11 8.3E-16 111.9 8.3 57 108-164 217-273 (274)
36 TIGR00531 BCCP acetyl-CoA carb 99.2 4.8E-11 1E-15 103.9 8.1 57 108-164 100-156 (156)
37 PRK06302 acetyl-CoA carboxylas 99.1 1.5E-10 3.2E-15 100.7 8.1 57 108-164 99-155 (155)
38 PRK14042 pyruvate carboxylase 99.1 1.7E-10 3.7E-15 119.0 9.4 63 103-165 533-595 (596)
39 TIGR02712 urea_carbox urea car 99.0 6E-10 1.3E-14 123.0 9.1 63 102-164 1139-1201(1201)
40 PRK14040 oxaloacetate decarbox 99.0 2E-09 4.4E-14 111.1 9.1 62 103-164 532-593 (593)
41 TIGR01108 oadA oxaloacetate de 98.9 1.6E-09 3.4E-14 111.8 7.6 58 103-160 525-582 (582)
42 TIGR01235 pyruv_carbox pyruvat 98.9 2.3E-09 4.9E-14 117.8 8.8 62 103-164 1082-1143(1143)
43 PRK11857 dihydrolipoamide acet 98.9 2.5E-09 5.3E-14 102.5 6.5 41 202-242 2-42 (306)
44 PRK09282 pyruvate carboxylase 98.8 8.6E-09 1.9E-13 106.6 8.9 62 103-164 530-591 (592)
45 PRK12999 pyruvate carboxylase; 98.8 1.8E-08 4E-13 110.9 8.9 62 103-164 1084-1145(1146)
46 COG4770 Acetyl/propionyl-CoA c 98.7 2.1E-08 4.5E-13 101.7 7.3 62 103-164 583-644 (645)
47 PRK14843 dihydrolipoamide acet 98.7 1.4E-08 3.1E-13 98.8 5.5 42 201-242 48-89 (347)
48 COG1038 PycA Pyruvate carboxyl 98.6 8.6E-08 1.9E-12 100.4 6.2 62 103-164 1087-1148(1149)
49 cd06848 GCS_H Glycine cleavage 98.2 3E-06 6.5E-11 67.8 5.9 64 89-153 15-79 (96)
50 KOG0369 Pyruvate carboxylase [ 98.2 2.4E-06 5.2E-11 88.4 6.6 62 103-164 1114-1175(1176)
51 PRK09783 copper/silver efflux 98.0 2.7E-05 5.8E-10 77.2 9.4 65 102-166 130-243 (409)
52 KOG0238 3-Methylcrotonyl-CoA c 98.0 6E-06 1.3E-10 83.3 4.1 62 103-164 609-670 (670)
53 TIGR00998 8a0101 efflux pump m 98.0 2.4E-05 5.2E-10 74.4 8.1 35 133-167 205-239 (334)
54 PRK10559 p-hydroxybenzoic acid 97.9 1.9E-05 4.2E-10 75.4 6.5 65 102-166 54-188 (310)
55 TIGR03077 not_gcvH glycine cle 97.9 2.8E-05 6.1E-10 64.2 6.0 47 104-150 30-77 (110)
56 TIGR01730 RND_mfp RND family e 97.9 2.7E-05 5.8E-10 72.8 6.6 65 102-166 33-168 (322)
57 PRK10476 multidrug resistance 97.8 4.6E-05 1E-09 73.4 7.7 34 134-167 210-243 (346)
58 KOG0368 Acetyl-CoA carboxylase 97.8 2.7E-05 5.9E-10 86.0 6.5 66 101-167 691-756 (2196)
59 PRK00624 glycine cleavage syst 97.8 4.4E-05 9.5E-10 63.5 6.0 46 104-149 32-78 (114)
60 PRK13380 glycine cleavage syst 97.8 4.4E-05 9.6E-10 65.9 5.4 61 89-150 30-91 (144)
61 PRK15030 multidrug efflux syst 97.7 6.9E-05 1.5E-09 73.8 6.3 64 102-165 72-208 (397)
62 PRK15136 multidrug efflux syst 97.7 0.00013 2.9E-09 71.8 8.0 35 133-167 216-250 (390)
63 PRK09578 periplasmic multidrug 97.6 9E-05 1.9E-09 72.5 6.2 64 102-165 70-206 (385)
64 PRK01202 glycine cleavage syst 97.6 0.00018 3.8E-09 60.8 7.1 56 111-166 45-107 (127)
65 PRK14843 dihydrolipoamide acet 97.6 5E-05 1.1E-09 74.1 4.1 41 201-241 5-45 (347)
66 PRK03598 putative efflux pump 97.6 0.00013 2.8E-09 69.8 6.7 34 133-166 204-237 (331)
67 PRK09859 multidrug efflux syst 97.6 0.00011 2.5E-09 71.8 5.9 64 102-165 68-204 (385)
68 PRK11556 multidrug efflux syst 97.4 0.00032 7E-09 69.7 6.9 64 102-165 94-230 (415)
69 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00018 4E-09 51.0 3.5 29 102-130 9-37 (50)
70 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00036 7.8E-09 49.4 4.9 35 132-166 2-36 (50)
71 PRK12784 hypothetical protein; 97.4 0.0011 2.4E-08 51.5 7.8 64 103-166 13-77 (84)
72 PRK11578 macrolide transporter 97.4 0.00053 1.2E-08 66.6 7.6 27 102-128 68-94 (370)
73 TIGR00527 gcvH glycine cleavag 97.4 0.00024 5.1E-09 60.0 4.5 39 111-149 44-82 (127)
74 PF12700 HlyD_2: HlyD family s 97.2 0.0003 6.4E-09 66.0 3.7 26 102-128 28-53 (328)
75 TIGR02971 heterocyst_DevB ABC 97.2 0.001 2.3E-08 63.2 7.1 31 134-165 206-236 (327)
76 PF01597 GCV_H: Glycine cleava 97.0 0.0015 3.3E-08 54.7 5.7 46 104-149 31-77 (122)
77 TIGR03309 matur_yqeB selenium- 96.6 0.0065 1.4E-07 57.1 7.6 59 103-167 172-230 (256)
78 COG0509 GcvH Glycine cleavage 96.6 0.0023 5E-08 54.4 3.8 45 104-148 39-84 (131)
79 PRK05889 putative acetyl-CoA c 96.4 0.0054 1.2E-07 46.1 4.7 34 134-167 4-37 (71)
80 TIGR00999 8a0102 Membrane Fusi 96.4 0.0073 1.6E-07 55.2 5.9 33 134-166 90-122 (265)
81 cd06253 M14_ASTE_ASPA_like_3 A 96.3 0.015 3.2E-07 55.6 7.9 58 104-163 237-297 (298)
82 cd06251 M14_ASTE_ASPA_like_1 A 96.0 0.027 5.9E-07 53.4 7.9 58 103-163 227-286 (287)
83 cd06250 M14_PaAOTO_like An unc 95.9 0.025 5.5E-07 55.5 7.8 58 104-163 297-358 (359)
84 PF13375 RnfC_N: RnfC Barrel s 95.9 0.014 3.1E-07 47.4 4.9 46 103-149 38-83 (101)
85 cd06252 M14_ASTE_ASPA_like_2 A 95.7 0.043 9.4E-07 52.7 8.2 59 104-164 252-314 (316)
86 COG1566 EmrA Multidrug resista 95.7 0.02 4.2E-07 56.3 5.8 33 135-167 211-243 (352)
87 TIGR02994 ectoine_eutE ectoine 95.7 0.039 8.4E-07 53.6 7.7 58 104-163 263-324 (325)
88 PRK06748 hypothetical protein; 95.6 0.019 4.2E-07 45.2 4.6 33 134-166 6-39 (83)
89 cd06850 biotinyl_domain The bi 95.5 0.024 5.1E-07 40.7 4.3 31 135-165 2-32 (67)
90 PRK08225 acetyl-CoA carboxylas 95.4 0.031 6.8E-07 41.6 4.9 34 134-167 3-36 (70)
91 PF05896 NQRA: Na(+)-transloca 95.2 0.046 1E-06 51.5 6.4 56 104-164 38-95 (257)
92 COG0511 AccB Biotin carboxyl c 95.2 0.03 6.4E-07 48.0 4.5 34 132-165 70-103 (140)
93 cd06254 M14_ASTE_ASPA_like_4 A 95.0 0.06 1.3E-06 51.0 6.5 55 104-160 231-287 (288)
94 TIGR01235 pyruv_carbox pyruvat 94.6 0.12 2.5E-06 58.0 8.6 79 87-166 1020-1108(1143)
95 PF00529 HlyD: HlyD family sec 94.5 0.028 6E-07 52.1 2.9 25 103-127 9-33 (305)
96 PF13437 HlyD_3: HlyD family s 94.5 0.059 1.3E-06 42.6 4.4 31 135-165 2-32 (105)
97 PRK07051 hypothetical protein; 94.5 0.053 1.1E-06 41.8 3.9 27 101-127 53-79 (80)
98 TIGR02971 heterocyst_DevB ABC 94.4 0.066 1.4E-06 50.9 5.2 42 125-166 6-50 (327)
99 PF00529 HlyD: HlyD family sec 94.4 0.039 8.3E-07 51.1 3.5 34 133-166 2-35 (305)
100 COG3608 Predicted deacylase [G 94.0 0.15 3.3E-06 49.7 7.0 60 103-164 263-325 (331)
101 PRK06549 acetyl-CoA carboxylas 94.0 0.096 2.1E-06 44.6 4.9 35 132-166 61-95 (130)
102 PRK11556 multidrug efflux syst 93.9 0.12 2.7E-06 51.4 6.3 56 110-166 66-121 (415)
103 PRK10476 multidrug resistance 93.9 0.1 2.2E-06 50.3 5.4 35 132-166 48-82 (346)
104 KOG3373 Glycine cleavage syste 93.8 0.13 2.9E-06 45.3 5.5 56 89-149 71-126 (172)
105 TIGR00998 8a0101 efflux pump m 93.8 0.075 1.6E-06 50.4 4.3 35 132-166 42-76 (334)
106 PF00364 Biotin_lipoyl: Biotin 93.7 0.11 2.3E-06 39.5 4.1 34 134-167 2-41 (74)
107 PF12700 HlyD_2: HlyD family s 93.6 0.076 1.6E-06 49.7 4.0 40 124-166 15-54 (328)
108 PF09891 DUF2118: Uncharacteri 93.5 0.13 2.9E-06 44.8 4.9 47 102-148 87-134 (150)
109 PRK11578 macrolide transporter 93.4 0.19 4.2E-06 48.8 6.6 57 109-166 39-95 (370)
110 PRK09859 multidrug efflux syst 93.4 0.16 3.5E-06 49.7 6.1 56 110-166 40-95 (385)
111 PRK05641 putative acetyl-CoA c 93.0 0.16 3.6E-06 44.3 4.8 36 132-167 84-119 (153)
112 TIGR01000 bacteriocin_acc bact 93.0 0.18 3.9E-06 50.7 5.8 36 131-166 58-93 (457)
113 PRK09578 periplasmic multidrug 92.9 0.23 4.9E-06 48.7 6.3 56 110-166 42-97 (385)
114 TIGR01730 RND_mfp RND family e 92.9 0.18 4E-06 47.0 5.3 35 132-166 26-60 (322)
115 TIGR01843 type_I_hlyD type I s 92.8 0.18 3.9E-06 49.0 5.4 42 126-167 37-78 (423)
116 TIGR01936 nqrA NADH:ubiquinone 92.7 0.14 3.1E-06 51.9 4.5 45 103-148 37-81 (447)
117 COG1726 NqrA Na+-transporting 92.6 0.24 5.1E-06 48.9 5.7 54 108-166 42-97 (447)
118 TIGR03794 NHPM_micro_HlyD NHPM 92.3 0.25 5.3E-06 49.0 5.6 35 132-166 58-92 (421)
119 PRK05352 Na(+)-translocating N 92.1 0.27 5.8E-06 49.9 5.6 44 104-148 39-82 (448)
120 PRK10559 p-hydroxybenzoic acid 92.0 0.22 4.7E-06 47.7 4.7 34 133-166 48-81 (310)
121 PRK15136 multidrug efflux syst 91.9 0.22 4.8E-06 49.1 4.8 35 132-166 61-95 (390)
122 PRK03598 putative efflux pump 91.8 0.23 5E-06 47.4 4.6 35 132-166 43-77 (331)
123 PRK14042 pyruvate carboxylase 91.7 0.71 1.5E-05 48.5 8.4 35 133-167 526-560 (596)
124 TIGR01843 type_I_hlyD type I s 91.2 0.21 4.6E-06 48.5 3.8 31 135-165 274-305 (423)
125 PRK15030 multidrug efflux syst 91.2 0.46 1E-05 46.8 6.2 42 124-166 58-99 (397)
126 TIGR01000 bacteriocin_acc bact 91.2 0.21 4.5E-06 50.2 3.8 30 101-130 65-94 (457)
127 TIGR01945 rnfC electron transp 91.1 0.24 5.2E-06 49.8 4.1 43 104-147 40-82 (435)
128 cd06255 M14_ASTE_ASPA_like_5 A 91.0 0.8 1.7E-05 43.6 7.4 42 105-146 240-283 (293)
129 TIGR00531 BCCP acetyl-CoA carb 91.0 0.25 5.5E-06 43.1 3.7 28 100-127 129-156 (156)
130 TIGR03794 NHPM_micro_HlyD NHPM 90.6 0.27 5.9E-06 48.7 4.0 31 135-165 256-286 (421)
131 PF04952 AstE_AspA: Succinylgl 90.6 0.65 1.4E-05 43.4 6.3 60 104-165 228-291 (292)
132 PLN02226 2-oxoglutarate dehydr 90.2 0.32 6.9E-06 49.6 4.1 30 100-129 139-168 (463)
133 PF07831 PYNP_C: Pyrimidine nu 90.2 0.27 5.9E-06 37.8 2.8 30 101-130 28-57 (75)
134 PRK06302 acetyl-CoA carboxylas 90.1 0.34 7.3E-06 42.2 3.6 28 100-127 128-155 (155)
135 PRK09783 copper/silver efflux 90.0 0.55 1.2E-05 46.7 5.6 57 110-166 100-158 (409)
136 PF13437 HlyD_3: HlyD family s 89.5 0.76 1.7E-05 36.2 5.0 28 102-129 6-33 (105)
137 COG0845 AcrA Membrane-fusion p 89.1 1.1 2.3E-05 41.4 6.5 34 132-165 66-99 (372)
138 PRK09282 pyruvate carboxylase 88.8 1.3 2.9E-05 46.5 7.5 36 132-167 522-557 (592)
139 PLN02983 biotin carboxyl carri 88.6 0.55 1.2E-05 44.6 4.1 28 100-127 246-273 (274)
140 COG0845 AcrA Membrane-fusion p 88.2 0.49 1.1E-05 43.7 3.6 27 102-128 73-99 (372)
141 COG2190 NagE Phosphotransferas 88.0 1.1 2.4E-05 39.4 5.3 28 103-130 85-112 (156)
142 PRK14875 acetoin dehydrogenase 87.6 0.72 1.6E-05 43.6 4.3 29 102-130 52-80 (371)
143 PRK05035 electron transport co 87.5 0.96 2.1E-05 48.4 5.6 43 104-147 46-88 (695)
144 PRK14040 oxaloacetate decarbox 86.8 1.5 3.3E-05 46.0 6.6 36 132-167 524-559 (593)
145 PF00358 PTS_EIIA_1: phosphoen 86.7 1.5 3.3E-05 37.4 5.3 19 147-165 89-107 (132)
146 COG0508 AceF Pyruvate/2-oxoglu 86.6 0.83 1.8E-05 45.7 4.3 31 101-131 51-81 (404)
147 TIGR00164 PS_decarb_rel phosph 86.6 1.8 3.9E-05 38.8 6.0 48 110-161 135-182 (189)
148 cd00210 PTS_IIA_glc PTS_IIA, P 86.2 2.6 5.7E-05 35.5 6.5 22 145-166 83-104 (124)
149 PF02666 PS_Dcarbxylase: Phosp 86.1 1.8 3.9E-05 38.9 5.8 58 103-162 144-202 (202)
150 TIGR01108 oadA oxaloacetate de 85.8 1.8 3.8E-05 45.5 6.4 35 133-167 518-552 (582)
151 PF02749 QRPTase_N: Quinolinat 85.8 0.77 1.7E-05 36.0 2.9 23 106-128 46-68 (88)
152 PTZ00144 dihydrolipoamide succ 85.8 0.93 2E-05 45.7 4.2 30 100-129 92-121 (418)
153 PRK09439 PTS system glucose-sp 85.6 2.1 4.6E-05 38.0 5.9 20 147-166 107-126 (169)
154 TIGR01347 sucB 2-oxoglutarate 85.2 1.1 2.3E-05 44.9 4.3 30 100-129 48-77 (403)
155 COG4656 RnfC Predicted NADH:ub 85.1 0.92 2E-05 46.8 3.8 42 104-147 42-83 (529)
156 PRK05305 phosphatidylserine de 85.0 2.2 4.8E-05 38.7 5.9 54 104-162 150-204 (206)
157 cd06663 Biotinyl_lipoyl_domain 84.7 1.1 2.5E-05 33.0 3.3 25 102-126 49-73 (73)
158 PRK05704 dihydrolipoamide succ 84.7 1.2 2.5E-05 44.7 4.3 31 100-130 50-80 (407)
159 PRK09439 PTS system glucose-sp 84.0 2 4.3E-05 38.2 5.0 28 103-130 100-127 (169)
160 PLN02528 2-oxoisovalerate dehy 83.9 1.3 2.9E-05 44.4 4.3 33 98-130 44-76 (416)
161 COG1566 EmrA Multidrug resista 83.8 1.5 3.3E-05 43.2 4.6 35 132-166 53-87 (352)
162 TIGR01995 PTS-II-ABC-beta PTS 82.9 1.5 3.2E-05 46.3 4.3 28 103-130 542-569 (610)
163 TIGR00830 PTBA PTS system, glu 82.9 3.4 7.4E-05 34.7 5.7 21 145-165 83-103 (121)
164 PRK12999 pyruvate carboxylase; 82.8 4.7 0.0001 45.6 8.4 35 132-166 1076-1110(1146)
165 KOG0559 Dihydrolipoamide succi 82.4 1.5 3.2E-05 43.5 3.8 28 102-129 122-149 (457)
166 COG4072 Uncharacterized protei 82.2 2.9 6.3E-05 36.2 5.0 45 103-147 99-144 (161)
167 TIGR00830 PTBA PTS system, glu 82.2 1.2 2.7E-05 37.4 2.8 27 103-129 78-104 (121)
168 cd06849 lipoyl_domain Lipoyl d 82.1 1.6 3.6E-05 30.4 3.1 25 102-126 50-74 (74)
169 cd00210 PTS_IIA_glc PTS_IIA, P 81.7 1.3 2.9E-05 37.3 2.9 27 103-129 78-104 (124)
170 COG2190 NagE Phosphotransferas 81.2 3.6 7.8E-05 36.2 5.4 26 141-166 86-111 (156)
171 TIGR01349 PDHac_trf_mito pyruv 79.5 2.4 5.3E-05 42.8 4.4 30 101-130 48-78 (435)
172 TIGR02712 urea_carbox urea car 79.3 2.4 5.3E-05 48.1 4.7 35 132-166 1132-1166(1201)
173 PRK09824 PTS system beta-gluco 78.6 2.4 5.3E-05 44.9 4.2 28 103-130 558-585 (627)
174 PF00358 PTS_EIIA_1: phosphoen 78.2 1.5 3.2E-05 37.4 2.0 28 103-130 82-109 (132)
175 PRK03934 phosphatidylserine de 77.4 6 0.00013 37.4 6.1 49 112-163 217-265 (265)
176 COG4770 Acetyl/propionyl-CoA c 76.2 3.4 7.4E-05 43.2 4.3 34 132-165 575-608 (645)
177 PRK11892 pyruvate dehydrogenas 76.0 3.3 7.2E-05 42.3 4.2 31 100-130 50-81 (464)
178 COG1038 PycA Pyruvate carboxyl 75.7 6.7 0.00015 42.9 6.4 31 135-165 1082-1112(1149)
179 PRK12784 hypothetical protein; 74.3 5.2 0.00011 31.4 3.9 35 134-168 7-41 (84)
180 PRK14844 bifunctional DNA-dire 72.8 5.8 0.00013 48.1 5.6 21 108-128 2423-2443(2836)
181 PLN02744 dihydrolipoyllysine-r 72.3 4 8.6E-05 42.6 3.7 31 99-129 159-190 (539)
182 PRK11856 branched-chain alpha- 71.4 5.5 0.00012 39.6 4.4 31 101-131 51-81 (411)
183 PRK10255 PTS system N-acetyl g 70.9 5.4 0.00012 42.5 4.4 28 103-130 578-605 (648)
184 PF13375 RnfC_N: RnfC Barrel s 70.7 7.4 0.00016 31.6 4.3 54 112-165 10-63 (101)
185 TIGR03309 matur_yqeB selenium- 70.5 5.7 0.00012 37.6 4.0 33 132-165 164-196 (256)
186 PRK10255 PTS system N-acetyl g 70.4 10 0.00022 40.4 6.4 44 120-166 526-604 (648)
187 TIGR00163 PS_decarb phosphatid 69.6 5.7 0.00012 36.8 3.9 48 114-162 189-236 (238)
188 cd06255 M14_ASTE_ASPA_like_5 A 67.5 6.9 0.00015 37.2 4.0 34 132-166 231-264 (293)
189 COG3608 Predicted deacylase [G 67.4 9.2 0.0002 37.5 4.9 43 121-166 247-289 (331)
190 PRK03140 phosphatidylserine de 66.3 8.6 0.00019 36.2 4.4 52 111-163 207-258 (259)
191 KOG0368 Acetyl-CoA carboxylase 64.8 10 0.00022 44.1 5.1 78 88-165 634-718 (2196)
192 cd06253 M14_ASTE_ASPA_like_3 A 64.7 8.1 0.00018 36.9 3.9 33 132-165 229-261 (298)
193 COG0157 NadC Nicotinate-nucleo 64.6 6.8 0.00015 37.5 3.3 25 105-129 64-88 (280)
194 cd06251 M14_ASTE_ASPA_like_1 A 63.4 9.2 0.0002 36.2 4.0 33 133-166 220-252 (287)
195 cd06254 M14_ASTE_ASPA_like_4 A 63.2 9.4 0.0002 36.1 4.0 34 131-165 222-255 (288)
196 TIGR01995 PTS-II-ABC-beta PTS 63.0 15 0.00032 38.9 5.8 60 103-166 470-568 (610)
197 PF01551 Peptidase_M23: Peptid 62.7 22 0.00047 27.5 5.4 57 101-166 19-75 (96)
198 PRK09824 PTS system beta-gluco 62.5 14 0.00031 39.2 5.5 61 102-166 485-584 (627)
199 TIGR02645 ARCH_P_rylase putati 62.4 14 0.00029 38.3 5.2 41 126-166 407-471 (493)
200 PF01551 Peptidase_M23: Peptid 61.7 8.3 0.00018 29.9 2.9 27 104-130 50-76 (96)
201 cd06250 M14_PaAOTO_like An unc 61.6 10 0.00022 37.3 4.1 33 133-166 290-322 (359)
202 PF06898 YqfD: Putative stage 60.1 14 0.00031 36.6 4.8 54 103-163 167-227 (385)
203 cd06252 M14_ASTE_ASPA_like_2 A 59.7 16 0.00034 35.1 5.0 35 131-166 243-277 (316)
204 KOG0369 Pyruvate carboxylase [ 58.9 8.3 0.00018 41.4 3.0 32 134-165 1108-1139(1176)
205 cd06910 M14_ASTE_ASPA_like_7 A 58.8 17 0.00036 34.2 4.9 45 111-162 226-271 (272)
206 PRK00044 psd phosphatidylserin 58.8 13 0.00028 35.5 4.1 49 114-164 237-286 (288)
207 TIGR02994 ectoine_eutE ectoine 58.6 12 0.00027 36.3 4.0 33 132-165 255-287 (325)
208 cd01572 QPRTase Quinolinate ph 57.1 13 0.00028 35.2 3.8 27 103-129 56-82 (268)
209 PRK08072 nicotinate-nucleotide 56.1 12 0.00026 35.7 3.4 23 107-129 66-88 (277)
210 PF05896 NQRA: Na(+)-transloca 55.6 10 0.00022 36.0 2.7 30 134-163 31-60 (257)
211 PRK02597 rpoC2 DNA-directed RN 55.3 36 0.00079 39.2 7.4 36 108-143 404-446 (1331)
212 TIGR02643 T_phosphoryl thymidi 54.9 10 0.00022 38.6 2.8 28 101-128 376-403 (437)
213 PRK05820 deoA thymidine phosph 54.2 10 0.00023 38.5 2.8 28 101-128 377-404 (440)
214 KOG0557 Dihydrolipoamide acety 53.9 11 0.00025 38.4 3.0 29 139-167 51-79 (470)
215 PF07831 PYNP_C: Pyrimidine nu 53.8 20 0.00044 27.4 3.7 29 138-168 30-58 (75)
216 KOG0238 3-Methylcrotonyl-CoA c 53.1 12 0.00025 39.1 2.9 31 135-165 604-634 (670)
217 TIGR00999 8a0102 Membrane Fusi 52.4 16 0.00035 33.1 3.5 27 102-128 95-121 (265)
218 PRK04350 thymidine phosphoryla 52.4 24 0.00052 36.5 5.1 41 126-166 399-463 (490)
219 PRK06543 nicotinate-nucleotide 51.8 15 0.00033 35.2 3.4 24 106-129 66-89 (281)
220 PRK06096 molybdenum transport 51.2 16 0.00034 35.1 3.3 24 106-129 62-85 (284)
221 PRK05742 nicotinate-nucleotide 50.4 17 0.00036 34.8 3.4 23 107-129 68-90 (277)
222 PTZ00403 phosphatidylserine de 50.2 18 0.00038 35.9 3.6 58 104-165 281-340 (353)
223 TIGR02644 Y_phosphoryl pyrimid 50.1 14 0.0003 37.3 2.9 29 101-129 370-398 (405)
224 PRK07428 nicotinate-nucleotide 49.3 18 0.00038 34.8 3.4 24 106-129 73-96 (288)
225 TIGR02876 spore_yqfD sporulati 48.8 34 0.00074 34.0 5.4 54 103-162 163-223 (382)
226 cd01573 modD_like ModD; Quinol 48.8 18 0.00039 34.3 3.4 25 105-129 56-80 (272)
227 PF06898 YqfD: Putative stage 48.7 18 0.00038 35.9 3.4 24 102-125 196-226 (385)
228 TIGR02643 T_phosphoryl thymidi 48.7 28 0.00061 35.5 4.8 39 128-166 335-404 (437)
229 TIGR03327 AMP_phos AMP phospho 48.5 28 0.00061 36.0 4.9 41 126-166 408-472 (500)
230 TIGR02645 ARCH_P_rylase putati 48.4 17 0.00036 37.6 3.3 31 98-128 440-470 (493)
231 cd01568 QPRTase_NadC Quinolina 48.1 19 0.00041 34.0 3.4 26 104-129 56-81 (269)
232 PRK06078 pyrimidine-nucleoside 47.9 17 0.00036 37.0 3.1 30 101-130 372-401 (434)
233 PRK06978 nicotinate-nucleotide 47.9 19 0.00041 34.8 3.4 25 105-129 82-106 (294)
234 PRK09016 quinolinate phosphori 47.7 19 0.00041 34.8 3.3 24 106-129 86-109 (296)
235 cd01134 V_A-ATPase_A V/A-type 47.5 60 0.0013 32.4 6.8 55 110-166 54-111 (369)
236 TIGR02644 Y_phosphoryl pyrimid 47.3 31 0.00068 34.8 4.9 41 126-166 327-398 (405)
237 PRK07896 nicotinate-nucleotide 47.1 20 0.00043 34.5 3.4 24 106-129 77-100 (289)
238 PRK05820 deoA thymidine phosph 47.1 31 0.00066 35.2 4.8 39 128-166 336-405 (440)
239 PRK04350 thymidine phosphoryla 46.8 19 0.0004 37.3 3.3 31 98-128 432-462 (490)
240 PRK05848 nicotinate-nucleotide 46.8 20 0.00044 34.1 3.4 24 106-129 59-82 (273)
241 PRK06106 nicotinate-nucleotide 46.4 21 0.00045 34.2 3.4 26 104-129 69-94 (281)
242 PLN02716 nicotinate-nucleotide 46.3 21 0.00045 34.8 3.4 25 105-129 78-102 (308)
243 TIGR03327 AMP_phos AMP phospho 46.1 19 0.0004 37.3 3.2 31 98-128 441-471 (500)
244 COG1155 NtpA Archaeal/vacuolar 46.1 62 0.0013 34.0 6.8 57 111-168 122-180 (588)
245 TIGR01334 modD putative molybd 45.5 22 0.00048 34.0 3.4 25 105-129 60-84 (277)
246 PRK10871 nlpD lipoprotein NlpD 45.3 51 0.0011 32.2 5.9 41 123-167 253-293 (319)
247 TIGR01042 V-ATPase_V1_A V-type 45.2 46 0.001 35.2 5.9 55 110-166 123-180 (591)
248 PF09891 DUF2118: Uncharacteri 45.1 26 0.00057 30.6 3.5 40 116-166 75-114 (150)
249 PRK14844 bifunctional DNA-dire 44.5 30 0.00064 42.5 4.8 19 108-126 2525-2543(2836)
250 TIGR00078 nadC nicotinate-nucl 44.4 24 0.00051 33.4 3.4 23 107-129 56-78 (265)
251 PRK06078 pyrimidine-nucleoside 44.2 36 0.00078 34.6 4.8 39 127-165 330-399 (434)
252 PRK10871 nlpD lipoprotein NlpD 44.1 21 0.00046 34.9 3.0 22 108-129 271-292 (319)
253 PRK08385 nicotinate-nucleotide 43.9 24 0.00052 33.7 3.4 25 105-129 58-82 (278)
254 TIGR02876 spore_yqfD sporulati 42.9 28 0.00061 34.6 3.8 24 102-125 193-223 (382)
255 CHL00117 rpoC2 RNA polymerase 42.1 29 0.00062 40.2 4.1 37 108-144 405-449 (1364)
256 COG4072 Uncharacterized protei 41.5 48 0.001 28.8 4.4 31 136-166 95-125 (161)
257 PRK11536 6-N-hydroxylaminopuri 38.8 33 0.00071 31.8 3.3 73 92-166 79-166 (223)
258 PRK08662 nicotinate phosphorib 34.8 38 0.00082 33.3 3.3 25 103-129 69-93 (343)
259 PRK14698 V-type ATP synthase s 34.6 87 0.0019 35.3 6.3 67 92-166 107-180 (1017)
260 COG1725 Predicted transcriptio 34.1 16 0.00035 31.0 0.5 19 205-223 35-53 (125)
261 PF01333 Apocytochr_F_C: Apocy 34.1 44 0.00096 28.1 3.0 50 102-161 9-61 (118)
262 COG0213 DeoA Thymidine phospho 33.5 37 0.00081 34.5 3.0 20 146-165 381-400 (435)
263 PRK02259 aspartoacylase; Provi 32.8 28 0.00061 33.0 2.0 51 108-161 229-281 (288)
264 PRK09603 bifunctional DNA-dire 32.2 60 0.0013 40.2 4.8 19 109-127 2616-2634(2890)
265 PRK04192 V-type ATP synthase s 31.6 1.2E+02 0.0025 32.3 6.3 56 110-167 123-181 (586)
266 cd06848 GCS_H Glycine cleavage 31.5 63 0.0014 25.4 3.5 29 139-167 27-56 (96)
267 PF02749 QRPTase_N: Quinolinat 31.0 64 0.0014 25.0 3.4 25 141-165 44-68 (88)
268 PRK06559 nicotinate-nucleotide 30.7 60 0.0013 31.3 3.8 26 104-129 70-97 (290)
269 COG1326 Uncharacterized archae 30.6 1.6E+02 0.0035 27.0 6.2 54 89-157 51-104 (201)
270 cd00516 PRTase_typeII Phosphor 30.1 55 0.0012 30.5 3.4 26 104-129 49-74 (281)
271 PF02666 PS_Dcarbxylase: Phosp 29.4 42 0.00091 30.0 2.4 22 104-125 181-202 (202)
272 COG2258 Uncharacterized protei 29.3 70 0.0015 29.5 3.8 72 92-165 76-162 (210)
273 COG1678 Putative transcription 28.7 31 0.00068 31.4 1.4 12 291-302 130-141 (194)
274 PRK05352 Na(+)-translocating N 28.4 39 0.00084 34.5 2.2 35 131-165 29-63 (448)
275 PRK09603 bifunctional DNA-dire 27.4 78 0.0017 39.3 4.6 21 146-166 2616-2636(2890)
276 PRK07188 nicotinate phosphorib 27.4 65 0.0014 31.9 3.5 25 105-129 71-95 (352)
277 PRK02597 rpoC2 DNA-directed RN 27.4 81 0.0017 36.6 4.6 20 108-127 951-970 (1331)
278 COG0213 DeoA Thymidine phospho 27.1 1.1E+02 0.0025 31.1 5.1 25 125-149 329-353 (435)
279 TIGR00164 PS_decarb_rel phosph 27.1 2.3E+02 0.0049 25.2 6.6 63 103-166 80-154 (189)
280 TIGR01043 ATP_syn_A_arch ATP s 26.8 1.4E+02 0.0031 31.5 6.0 56 110-167 120-178 (578)
281 COG0739 NlpD Membrane proteins 26.3 42 0.00092 30.5 1.9 21 108-128 215-235 (277)
282 TIGR01936 nqrA NADH:ubiquinone 25.9 37 0.00081 34.6 1.5 33 133-165 30-62 (447)
283 TIGR01764 excise DNA binding d 24.6 76 0.0016 20.6 2.5 32 207-241 17-48 (49)
284 cd01571 NAPRTase_B Nicotinate 24.4 77 0.0017 30.5 3.3 25 103-129 52-76 (302)
285 COG3453 Uncharacterized protei 23.8 89 0.0019 26.7 3.2 36 205-242 47-82 (130)
286 PRK11637 AmiB activator; Provi 23.6 1.4E+02 0.0029 29.9 5.0 58 101-167 345-402 (428)
287 KOG1668 Elongation factor 1 be 23.6 48 0.0011 31.0 1.7 27 108-134 181-207 (231)
288 PRK11637 AmiB activator; Provi 21.9 43 0.00093 33.4 1.1 23 108-130 380-402 (428)
289 smart00226 LMWPc Low molecular 21.9 74 0.0016 26.2 2.4 30 204-238 42-71 (140)
290 TIGR01945 rnfC electron transp 20.9 82 0.0018 31.8 2.9 29 137-165 36-64 (435)
291 PRK13380 glycine cleavage syst 20.6 1.1E+02 0.0024 26.3 3.3 32 136-167 39-71 (144)
292 PF12728 HTH_17: Helix-turn-he 20.6 1.1E+02 0.0023 20.8 2.6 35 206-243 16-50 (51)
293 PRK05305 phosphatidylserine de 20.5 4.1E+02 0.009 23.9 7.1 63 103-166 99-174 (206)
294 PRK11391 etp phosphotyrosine-p 20.1 90 0.002 26.4 2.6 30 204-237 45-74 (144)
No 1
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=6.1e-39 Score=303.63 Aligned_cols=213 Identities=46% Similarity=0.664 Sum_probs=167.0
Q ss_pred chhhhhhhcCCCCccccccccccccccCCCCCCCCCCcccCccccCCccccccCCcccchhcccCCCcccccceeccccc
Q 021956 2 MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHAL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (305)
|+.+|||+.|++++ . ++ .|.++++..-+..+.+.++.. .-|+|+. .+|.||++++.
T Consensus 1 m~A~rllrt~s~~~------~--~~------------~Cv~~~~~~~~~~h~skp~~v---~l~~~~~-~~~s~~~~~~~ 56 (474)
T KOG0558|consen 1 MMARRLLRTHSRLS------S--SS------------VCVPEYFSLSSSLHVSKPFFV---TLMKWGG-GSRSWFSNEAM 56 (474)
T ss_pred ChhHHhhhhccccc------c--cc------------hhHHHHHhhccCccccCcceE---EEeccCC-ccccccchhhh
Confidence 77899999999987 1 11 344444333344444444444 3578887 67889999998
Q ss_pred cCCCCCceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEE
Q 021956 82 ADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (305)
Q Consensus 82 ~~~~~~~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La 161 (305)
+.....+.++|+|.|+||+|.|++|.+|+|+|||+|++.|.||||++||++++|++.++|+|++|+.+.+|.+.+|++|.
T Consensus 57 ~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lv 136 (474)
T KOG0558|consen 57 ATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLV 136 (474)
T ss_pred hcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCccee
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 162 KLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
.++.++.+.......+...... .. . ........+++|||++|+||+|+||||+.|+|||+||||+||||++|+.
T Consensus 137 d~eve~~~ds~e~s~es~~vs~-~~--~---~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~ 210 (474)
T KOG0558|consen 137 DLEVEDSQDSPEDSDESPAVSL-GE--S---KQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLG 210 (474)
T ss_pred eeeeccCcCCcccCCccccccC-CC--C---chhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhc
Confidence 9998765433222111110000 00 0 0001122457899999999999999999999999999999999999997
Q ss_pred hcC
Q 021956 242 QKG 244 (305)
Q Consensus 242 ~~~ 244 (305)
+..
T Consensus 211 q~p 213 (474)
T KOG0558|consen 211 QVP 213 (474)
T ss_pred cCC
Confidence 653
No 2
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=2.1e-30 Score=254.92 Aligned_cols=153 Identities=30% Similarity=0.507 Sum_probs=121.1
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
.++|+||+||++|+||+|.+|||++||.|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|+.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHhc
Q 021956 169 AVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243 (305)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~~ 243 (305)
..++.......+.. .... ..+...........+++|++|+||+|+|||++.+.|||++|||+++|+..++...
T Consensus 82 ~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~ 154 (404)
T COG0508 82 DAPAAAEAPPEPAA-AAPA-SAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK 154 (404)
T ss_pred cccccCcccCCccc-cCcC-cccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc
Confidence 42111100000000 0000 0000000011145789999999999999999999999999999999999998654
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.96 E-value=7.2e-29 Score=244.26 Aligned_cols=150 Identities=25% Similarity=0.417 Sum_probs=117.8
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCCC
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~~ 169 (305)
++|+||++|++|++|+|.+|+|++||.|++||+||+||+||++++|+|+++|+|.++++++|+.|.+|++|++|+.+++.
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA 82 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
................. ...+... .......++||++|+||+||||||++|+|||++|||+++||++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~ 152 (407)
T PRK05704 83 GAAAAAAAAAAAAAAAP-AQAQAAA-AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALA 152 (407)
T ss_pred cccCCCCCCCCCCCCCC-CCCCCCc-cCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhh
Confidence 11100000000000000 0000000 0111235799999999999999999999999999999999999984
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.96 E-value=1.6e-28 Score=241.49 Aligned_cols=150 Identities=27% Similarity=0.443 Sum_probs=117.2
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCCC
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~~ 169 (305)
++|+||++|++|++|+|.+|+|++||.|++||+|++||+||++++|+++.+|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
.+........+..........+ .+ .......++||++|+||+|+||||+.|+|||++|||+++||++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~ 150 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAA-AP-TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTE 150 (403)
T ss_pred cccccccccCCCCCCCCCCCCC-CC-cCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhh
Confidence 1100000000000000000000 00 0111245799999999999999999999999999999999999984
No 5
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.95 E-value=6.7e-27 Score=230.91 Aligned_cols=150 Identities=66% Similarity=0.970 Sum_probs=115.5
Q ss_pred EeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCCCCC
Q 021956 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP 171 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~~~~ 171 (305)
|+||++|++|+||+|++|+|++||.|++||+|+++|+||+.++++++.+|+|.++++++|+.|.+|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975433211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHh
Q 021956 172 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~ 242 (305)
.....+.............+... .......+++|++|+||+||||||+.|+|||++|||+++||++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~ 150 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQ 150 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhc
Confidence 00000000000000000000000 01112357999999999999999999999999999999999999853
No 6
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=99.95 E-value=2.6e-27 Score=231.91 Aligned_cols=158 Identities=25% Similarity=0.371 Sum_probs=123.5
Q ss_pred CceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCC-CeeecCceEEEEec
Q 021956 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLVV 165 (305)
Q Consensus 87 ~~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~G-d~V~vG~~La~i~~ 165 (305)
...+.|.||.|+.+|++|.|++|+++|||.+.+||+||||||||+++++++.++|++++|++++| ..|++|.+||.|.+
T Consensus 36 p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive 115 (470)
T KOG0557|consen 36 PAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVE 115 (470)
T ss_pred CcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEec
Confidence 34889999999999999999999999999999999999999999999999999999999999999 79999999999987
Q ss_pred CCCCCCCCC---C----C----CCCCCCCCCCC--CCCC--------CCCCCC-CCCCcccChHHHHHHHHhCCCccccc
Q 021956 166 GDSAVPTPS---S----D----VLESVKPPGSE--NSPD--------SKLNKD-TVGGVLATPTVRNLAKLYGINLYDVD 223 (305)
Q Consensus 166 ~~~~~~~~~---~----~----~~~~~~~~~~~--~~~~--------~~~~~~-~~~~~~AsPaaRklA~e~gIDLs~V~ 223 (305)
++++..+.. . . ..+++..++.. ...| +.+... ...++.++|++++||.|+|+|+..|+
T Consensus 116 ~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~ 195 (470)
T KOG0557|consen 116 DEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIP 195 (470)
T ss_pred ccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccCc
Confidence 655332110 0 0 00000000000 0001 001011 12468899999999999999999999
Q ss_pred cCCCCCceehHHHHHHHHhcC
Q 021956 224 ATGKDGRVLKEDVLKYAVQKG 244 (305)
Q Consensus 224 GTG~~GRItkeDV~~~~~~~~ 244 (305)
|||+.|||+|.||++|+...+
T Consensus 196 gtGP~Gri~k~Di~~~v~~~~ 216 (470)
T KOG0557|consen 196 GTGPHGRILKGDIEKHVGSGK 216 (470)
T ss_pred CcCCCceeehhhHHHhhcccc
Confidence 999999999999999997543
No 7
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.95 E-value=7e-27 Score=236.35 Aligned_cols=167 Identities=26% Similarity=0.446 Sum_probs=122.5
Q ss_pred cccceeccccccCCCCCceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCC
Q 021956 71 VSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150 (305)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~ 150 (305)
...|.|++.+. .++ -++|+||++|++|++|+|.+|+|++||.|++||+||+|||||++++++++.+|+|.+|++++
T Consensus 98 ~~~~~~~~~~~--~~~--~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~e 173 (539)
T PLN02744 98 QSARGFSSSSD--LPP--HQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173 (539)
T ss_pred ccccccccccc--CCC--CceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecC
Confidence 34445555442 233 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-eeecCceEEEEecCCCCCC-----CC----CCC--CC--CCCCCC-C---CCCCCCC--CCC--C--CCCCCcccCh
Q 021956 151 GN-IVKVGETLLKLVVGDSAVP-----TP----SSD--VL--ESVKPP-G---SENSPDS--KLN--K--DTVGGVLATP 206 (305)
Q Consensus 151 Gd-~V~vG~~La~i~~~~~~~~-----~~----~~~--~~--~~~~~~-~---~~~~~~~--~~~--~--~~~~~~~AsP 206 (305)
|+ .|++|++|+++..++++.+ .. ... .+ .+.... . .....+. ... . .....+++||
T Consensus 174 G~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP 253 (539)
T PLN02744 174 GAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASP 253 (539)
T ss_pred CCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCc
Confidence 96 7999999999854322110 00 000 00 000000 0 0000000 000 0 0112367999
Q ss_pred HHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 207 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 207 aaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
++|+||+||||||+.|+|||++|||+++||++|+.
T Consensus 254 ~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~ 288 (539)
T PLN02744 254 LARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLA 288 (539)
T ss_pred hhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhh
Confidence 99999999999999999999999999999999985
No 8
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.95 E-value=5.3e-27 Score=240.42 Aligned_cols=154 Identities=28% Similarity=0.409 Sum_probs=118.4
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
.++|+||+||++|++|+|.+|+|++||.|++||+||+|||||++++|+++++|+|.+|++++|+.|++|++|+.|+.+++
T Consensus 135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 214 (590)
T TIGR02927 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA 214 (590)
T ss_pred ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred CCCC-----CCC-C------CCCCCCCC-----CCC---C----CCCCCC---CC-C-CCCCcccChHHHHHHHHhCCCc
Q 021956 169 AVPT-----PSS-D------VLESVKPP-----GSE---N----SPDSKL---NK-D-TVGGVLATPTVRNLAKLYGINL 219 (305)
Q Consensus 169 ~~~~-----~~~-~------~~~~~~~~-----~~~---~----~~~~~~---~~-~-~~~~~~AsPaaRklA~e~gIDL 219 (305)
..+. ... . ...+.... ... . ..+... .. . ....+++||++|+||+||||||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl 294 (590)
T TIGR02927 215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL 294 (590)
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence 2110 000 0 00000000 000 0 000000 00 0 1124689999999999999999
Q ss_pred cccccCCCCCceehHHHHHHHHh
Q 021956 220 YDVDATGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 220 s~V~GTG~~GRItkeDV~~~~~~ 242 (305)
+.|.|||++|||+|+||++|+.+
T Consensus 295 ~~v~GtG~~GrI~k~DV~~~~~~ 317 (590)
T TIGR02927 295 NSVKGTGIGGRIRKQDVLAAAEG 317 (590)
T ss_pred HHCCCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999999853
No 9
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.95 E-value=1.2e-26 Score=236.02 Aligned_cols=152 Identities=28% Similarity=0.452 Sum_probs=116.7
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
.++|+||++|+ |++|+|.+|+|++||.|++||+|++||+||++++|+++++|+|.++++++|+.|.+|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999999976442
Q ss_pred CCCCC-C--CCC---CCCCCCCCCCCCCC---C--CCC-----CCCCCCc-ccChHHHHHHHHhCCCccccccCCCCCce
Q 021956 169 AVPTP-S--SDV---LESVKPPGSENSPD---S--KLN-----KDTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV 231 (305)
Q Consensus 169 ~~~~~-~--~~~---~~~~~~~~~~~~~~---~--~~~-----~~~~~~~-~AsPaaRklA~e~gIDLs~V~GTG~~GRI 231 (305)
..... . ... ..+..........+ . ... ......+ ++||++|+||+||||||+.|+|||++|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 0 000 00000000000000 0 000 0011134 69999999999999999999999999999
Q ss_pred ehHHHHHHHH
Q 021956 232 LKEDVLKYAV 241 (305)
Q Consensus 232 tkeDV~~~~~ 241 (305)
+++||++|+.
T Consensus 275 ~~~DV~~~~~ 284 (546)
T TIGR01348 275 LREDVQRFVK 284 (546)
T ss_pred eHHHHHHHhh
Confidence 9999999985
No 10
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.94 E-value=5.2e-26 Score=225.70 Aligned_cols=151 Identities=25% Similarity=0.450 Sum_probs=115.1
Q ss_pred EeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCe-eecCceEEEEecCCCCC
Q 021956 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV 170 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~-V~vG~~La~i~~~~~~~ 170 (305)
|+||++|++|++|+|.+|+|++||.|++||+||+||+||+++++.++.+|+|.++++++|+. |++|++|++|+.+++..
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999 99999999997543221
Q ss_pred C-C--------C--C--CCCCCCCCCC--CCCCCCC--C--CC---CC---C-CCCCcccChHHHHHHHHhCCCcccccc
Q 021956 171 P-T--------P--S--SDVLESVKPP--GSENSPD--S--KL---NK---D-TVGGVLATPTVRNLAKLYGINLYDVDA 224 (305)
Q Consensus 171 ~-~--------~--~--~~~~~~~~~~--~~~~~~~--~--~~---~~---~-~~~~~~AsPaaRklA~e~gIDLs~V~G 224 (305)
. . . . .....+.... ..+...+ . .. .. . ....++++|++|+||+||||||+.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 1 0 0 0 0000000000 0000000 0 00 00 0 112367999999999999999999999
Q ss_pred CCCCCceehHHHHHHHHh
Q 021956 225 TGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 225 TG~~GRItkeDV~~~~~~ 242 (305)
||++|||+++||++|+.+
T Consensus 162 tG~~GrI~~~DV~~~~~~ 179 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQ 179 (435)
T ss_pred CCCCCceeHHHHHHHHhc
Confidence 999999999999999853
No 11
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.94 E-value=4.7e-26 Score=235.15 Aligned_cols=153 Identities=32% Similarity=0.500 Sum_probs=117.0
Q ss_pred ceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 88 ~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..++|+||++| +++|+|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|+.|+.++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 36799999999 8999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred CCCCC-CCC---CCCCCCC-CCCCCCCCCC--C-C--C-CCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHH
Q 021956 168 SAVPT-PSS---DVLESVK-PPGSENSPDS--K-L--N-KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (305)
Q Consensus 168 ~~~~~-~~~---~~~~~~~-~~~~~~~~~~--~-~--~-~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV 236 (305)
+.... ... ..+.+.. ....+...+. . . . ......+++||++|+||+||||||+.|+|||++|||+++||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 362 (633)
T PRK11854 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV 362 (633)
T ss_pred CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence 32110 000 0000000 0000000000 0 0 0 01112467999999999999999999999999999999999
Q ss_pred HHHHHh
Q 021956 237 LKYAVQ 242 (305)
Q Consensus 237 ~~~~~~ 242 (305)
++|+.+
T Consensus 363 ~~~~~~ 368 (633)
T PRK11854 363 QAYVKD 368 (633)
T ss_pred HHHhhc
Confidence 999853
No 12
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.93 E-value=2.5e-25 Score=218.91 Aligned_cols=153 Identities=32% Similarity=0.534 Sum_probs=117.2
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC-
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS- 168 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~- 168 (305)
++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.+++.||++|+|.++++++|+.|.+|++|+.|...++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCC---CCCCCC-CCCCCCC--CCCCCC---CCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHH
Q 021956 169 AVPTPS---SDVLES-VKPPGSE--NSPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (305)
Q Consensus 169 ~~~~~~---~~~~~~-~~~~~~~--~~~~~~---~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~ 239 (305)
+.+... ...... ......+ ...+.. .........+++|++|+||+||||||+.|.|||++|||+++||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~ 162 (411)
T PRK11856 83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA 162 (411)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence 211100 000000 0000000 000000 0000111236899999999999999999999999999999999999
Q ss_pred HHh
Q 021956 240 AVQ 242 (305)
Q Consensus 240 ~~~ 242 (305)
+.+
T Consensus 163 ~~~ 165 (411)
T PRK11856 163 AAA 165 (411)
T ss_pred Hhc
Confidence 853
No 13
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.93 E-value=2.1e-25 Score=226.91 Aligned_cols=154 Identities=35% Similarity=0.554 Sum_probs=117.5
Q ss_pred ceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 88 ~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.+++|+||++|+ |++|+|.+|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|...+
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 368999999999 9999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCC-CC--CCCCCCCCC-CC--CCCCCCC--CCCC--CCCC-CCCc-ccChHHHHHHHHhCCCccccccCCCCCceehHH
Q 021956 168 SAV-PT--PSSDVLESV-KP--PGSENSP--DSKL--NKDT-VGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (305)
Q Consensus 168 ~~~-~~--~~~~~~~~~-~~--~~~~~~~--~~~~--~~~~-~~~~-~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeD 235 (305)
+.. .. .....+... .. ...+... +... .... .... ++||++|+||+||||||+.|.|||++|||+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 276 (547)
T PRK11855 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED 276 (547)
T ss_pred CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence 211 00 000000000 00 0000000 0000 0001 1233 789999999999999999999999999999999
Q ss_pred HHHHHHh
Q 021956 236 VLKYAVQ 242 (305)
Q Consensus 236 V~~~~~~ 242 (305)
|++|+.+
T Consensus 277 V~~~~~~ 283 (547)
T PRK11855 277 VQAFVKG 283 (547)
T ss_pred HHHHhhc
Confidence 9999853
No 14
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.80 E-value=1.1e-18 Score=174.01 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=81.8
Q ss_pred cceeccccccCCCCCceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCC
Q 021956 73 RCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152 (305)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd 152 (305)
.+|+..++.. ...+++|+||++|++|++|+|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++||
T Consensus 78 ~~~~~~~~~~---~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd 154 (463)
T PLN02226 78 QRWVRPFSSE---SGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD 154 (463)
T ss_pred hhcccccccc---cCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC
Confidence 4566654432 2234799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEEecCC
Q 021956 153 IVKVGETLLKLVVGD 167 (305)
Q Consensus 153 ~V~vG~~La~i~~~~ 167 (305)
.|.+|++|+.|+.++
T Consensus 155 ~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 155 TVEPGTKVAIISKSE 169 (463)
T ss_pred EecCCCEEEEeccCC
Confidence 999999999997543
No 15
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.77 E-value=1.4e-18 Score=164.36 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=96.7
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
..+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+..+.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV 81 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHhCCCccccccCCCCCceeh
Q 021956 169 AVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLK 233 (305)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItk 233 (305)
... ....+++|++++++++ ++++..+..++..+++..
T Consensus 82 ~~~---------------------------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (371)
T PRK14875 82 SDA---------------------------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGG 118 (371)
T ss_pred Ccc---------------------------cccccccchhhhcccc-ccchhhccCCCCcceEcC
Confidence 100 0012457777777777 777777776665555433
No 16
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.76 E-value=3.6e-18 Score=168.82 Aligned_cols=81 Identities=25% Similarity=0.526 Sum_probs=77.7
Q ss_pred CceEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 87 ~~~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..+.+|+||++|++|++|+|.+|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred C
Q 021956 167 D 167 (305)
Q Consensus 167 ~ 167 (305)
+
T Consensus 122 ~ 122 (418)
T PTZ00144 122 G 122 (418)
T ss_pred C
Confidence 4
No 17
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.74 E-value=6.5e-18 Score=129.14 Aligned_cols=74 Identities=27% Similarity=0.555 Sum_probs=72.0
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.+|++|.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999986
No 18
>PRK06748 hypothetical protein; Validated
Probab=99.62 E-value=2e-15 Score=118.53 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=61.2
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEec-CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEt-dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.|+|.+|+|++||.|++||+|++||| ||++.+|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 59999999999999999999999999 9999999999999999999999999999999999975
No 19
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.54 E-value=3.4e-14 Score=107.57 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=60.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999884
No 20
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=99.54 E-value=9e-15 Score=140.23 Aligned_cols=79 Identities=32% Similarity=0.566 Sum_probs=76.9
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.+++++|.++|+|+||.|.+|++++||.|++++.|++|||||.+++|.+|.+|+|.+++|++||+|+.|+.|+.|+...
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999853
No 21
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.50 E-value=1.8e-13 Score=137.35 Aligned_cols=78 Identities=26% Similarity=0.469 Sum_probs=74.6
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCC-eeecCceEEEEecCC
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 167 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd-~V~vG~~La~i~~~~ 167 (305)
++|+||++|+++++|+|.+|+|++||.|++||+|++|||||++++++++.+|+|.++++++|+ .|++|++|+.|+.++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 489999999999999999999999999999999999999999999999999999999999995 899999999997654
No 22
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.49 E-value=1.8e-13 Score=103.15 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=69.2
Q ss_pred EeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
|.+|+++..+.+|++.+|++++||.|++||+|+++|++|+..+|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999875
No 23
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.47 E-value=1e-13 Score=118.51 Aligned_cols=62 Identities=27% Similarity=0.352 Sum_probs=60.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
-|++.+.+|++||.|++||+||+||.||+.++|.||.+|+|.+|++++|+.|..||+|+.|+
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 48999999999999999999999999999999999999999999999999999999999986
No 24
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.44 E-value=4.3e-13 Score=139.16 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.8
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
++|+||+|| ++||+|.+|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|++|++|+.|+.+
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999875
No 25
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.43 E-value=6.4e-13 Score=100.04 Aligned_cols=62 Identities=31% Similarity=0.411 Sum_probs=60.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|.+|++++||.|++||+|+++|++|+..++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999985
No 26
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.40 E-value=9.4e-13 Score=135.68 Aligned_cols=76 Identities=26% Similarity=0.450 Sum_probs=74.0
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
++|+||++|++|.+|+|.+|+|++||.|+.||+||+||+||+++++.++.+|+|.++++++|+.|++|++|+.|+.
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999975
No 27
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.33 E-value=5.6e-12 Score=106.80 Aligned_cols=61 Identities=31% Similarity=0.504 Sum_probs=59.8
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.|+|.+|++++||.|++||+|+++|+||+..+|.+|.+|+|.++++++||.|..|++|+.|
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 6899999999999999999999999999999999999999999999999999999999987
No 28
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.32 E-value=7.7e-12 Score=127.86 Aligned_cols=76 Identities=39% Similarity=0.654 Sum_probs=73.3
Q ss_pred EEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
++|+||++|+ +.+|+|.+|+|++||.|++||+|++||+||+.++|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~ 78 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAA 78 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccc
Confidence 4799999999 999999999999999999999999999999999999999999999999999999999999999754
No 29
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.32 E-value=1.8e-12 Score=88.06 Aligned_cols=38 Identities=47% Similarity=0.713 Sum_probs=33.8
Q ss_pred CcccChHHHHHHHHhCCCccccccCCCCCceehHHHHH
Q 021956 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238 (305)
Q Consensus 201 ~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~ 238 (305)
++++||++|+||+|+|||+++|.|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 46789999999999999999999999999999999974
No 30
>PRK07051 hypothetical protein; Validated
Probab=99.28 E-value=2.5e-11 Score=94.15 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=63.0
Q ss_pred EEEeecCCCCCCceeEEEE-------EEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEE
Q 021956 90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (305)
Q Consensus 90 ~~i~lP~lges~~eG~I~~-------w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~ 162 (305)
.+|..|.. |++.+ |++++||.|++||+|+++|++|+..+|.++.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap~~------g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSPLP------GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCCCc------eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 45666654 66777 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 021956 163 LV 164 (305)
Q Consensus 163 i~ 164 (305)
|+
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 31
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.28 E-value=2.3e-11 Score=88.71 Aligned_cols=62 Identities=32% Similarity=0.485 Sum_probs=59.6
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.+|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.+++++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999875
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.28 E-value=1.4e-11 Score=126.01 Aligned_cols=75 Identities=31% Similarity=0.527 Sum_probs=72.2
Q ss_pred EEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 91 ~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+|+||+||+. .+|+|.+|+|++||.|++||+|++||+||+..+|.++.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 89999999999999999999999999999999999999999999999999999999999999753
No 33
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=1.5e-11 Score=106.91 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=59.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.|+|.+|++++||.|++||+|+++|+||+..+|.|+.+|+|.++++++|+.|..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 5899999999999999999999999999999999999999999999999999999999987
No 34
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.23 E-value=1.2e-10 Score=84.10 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=70.1
Q ss_pred EEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 91 ~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
++.+|+++.+..+|+|.+|+++.|+.|..|+.|+.++++|....+.++.+|++.+.++.+|+.+..|++|++|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999875
No 35
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.20 E-value=3.9e-11 Score=111.87 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=55.6
Q ss_pred EEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|++||.|++||+|++||+||+..+|.++.+|+|.++++++||.|..|++|+.|+
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 499999999999999999999999999999999999999999999999999999985
No 36
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.20 E-value=4.8e-11 Score=103.92 Aligned_cols=57 Identities=33% Similarity=0.493 Sum_probs=55.2
Q ss_pred EEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|++||.|++||+||.||+||+..+|.|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 100 ~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 100 KPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 399999999999999999999999999999999999999999999999999999874
No 37
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.13 E-value=1.5e-10 Score=100.70 Aligned_cols=57 Identities=32% Similarity=0.481 Sum_probs=55.1
Q ss_pred EEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 99 ~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 99 PPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 399999999999999999999999999999999999999999999999999999874
No 38
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.12 E-value=1.7e-10 Score=118.99 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=61.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.|+|.+|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|..|++|+.|++
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 699999999999999999999999999999999999999999999999999999999999964
No 39
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.03 E-value=6e-10 Score=122.95 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=61.0
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
-.|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 369999999999999999999999999999999999999999999999999999999999885
No 40
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.95 E-value=2e-09 Score=111.15 Aligned_cols=62 Identities=31% Similarity=0.415 Sum_probs=60.2
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 68999999999999999999999999999999999999999999999999999999999873
No 41
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.94 E-value=1.6e-09 Score=111.82 Aligned_cols=58 Identities=29% Similarity=0.390 Sum_probs=56.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~L 160 (305)
.|+|.+|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 6999999999999999999999999999999999999999999999999999999875
No 42
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.93 E-value=2.3e-09 Score=117.75 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=60.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|.+|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999999884
No 43
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.89 E-value=2.5e-09 Score=102.45 Aligned_cols=41 Identities=41% Similarity=0.711 Sum_probs=38.5
Q ss_pred cccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHh
Q 021956 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 202 ~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~ 242 (305)
+++||++|+||+||||||+.|+|||++|||+++||++|+.+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~ 42 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKS 42 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhc
Confidence 46899999999999999999999999999999999999854
No 44
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.84 E-value=8.6e-09 Score=106.57 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=60.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999985
No 45
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.76 E-value=1.8e-08 Score=110.89 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=60.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999986
No 46
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.73 E-value=2.1e-08 Score=101.72 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=60.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|+.+.|++|+.|.+||+|+.+|.|||+..|+++.+|+|+++.+.+||.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 69999999999999999999999999999999999999999999999999999999999986
No 47
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=98.71 E-value=1.4e-08 Score=98.79 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=39.0
Q ss_pred CcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHh
Q 021956 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 201 ~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~ 242 (305)
..++||+||+||+|+||||+.|+|||++|||+++||++|+..
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~ 89 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPE 89 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhc
Confidence 456899999999999999999999999999999999999843
No 48
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.56 E-value=8.6e-08 Score=100.37 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=60.1
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
-|+|+++.|+.||.|++||+|+.+|.|||+..|.+|++|+|.+++|+.||.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 58999999999999999999999999999999999999999999999999999999999875
No 49
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.20 E-value=3e-06 Score=67.77 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=49.8
Q ss_pred eEEEeecCCCCCCceeEEEE-EEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCe
Q 021956 89 IVDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~-w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~ 153 (305)
...+-|-+.+..+ =|+|.. |++++|+.|++||.|++||++|+..+|.||.+|+|.+++.+..+.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 4445454444332 466766 566779999999999999999999999999999999988776543
No 50
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.20 E-value=2.4e-06 Score=88.44 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=60.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
.|+|+++.|++|+.|++||+|+.+..||+++-|.||.+|+|+++.+..|+.+..|+.++.++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 69999999999999999999999999999999999999999999999999999999999886
No 51
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.00 E-value=2.7e-05 Score=77.22 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=57.3
Q ss_pred ceeEEEEEE-ccCCCEEecCCeEEEEecC------------------------------------------------cee
Q 021956 102 AECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KAT 132 (305)
Q Consensus 102 ~eG~I~~w~-v~eGD~V~~Gd~L~eIEtd------------------------------------------------K~~ 132 (305)
.+|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 479999999 9999999999999999841 013
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..|+||++|+|.+..+++|+.|..|++|+.|...
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~ 243 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 243 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence 5699999999999999999999999999999754
No 52
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.97 E-value=6e-06 Score=83.35 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.3
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
-|.|.+++|++||.|++||.|+.++.||+...+++|.+|+|..+.++.|++|..|.+|.+++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999998864
No 53
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.97 E-value=2.4e-05 Score=74.35 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.8
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..|+||++|+|..+.+++|+.|..|++|+.|...+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 46999999999999999999999999999997643
No 54
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.92 E-value=1.9e-05 Score=75.44 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=57.0
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
..|.|.+++|++||.|++||+|++++....
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999987310
Q ss_pred --------------------eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 --------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.||++|+|.++.+++|+.|..|++|+.|...
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 12499999999999999999999999999988653
No 55
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.88 E-value=2.8e-05 Score=64.24 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=39.2
Q ss_pred eEEEEEEc-cCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCC
Q 021956 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150 (305)
Q Consensus 104 G~I~~w~v-~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~ 150 (305)
|.|..+.. ++|+.|++||+|++||++|+..+|.||.+|+|.+++.+.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 34443333 679999999999999999999999999999999987543
No 56
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.88 E-value=2.7e-05 Score=72.82 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=57.2
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
.+|+|.+++|++||.|++||+|+.+++...
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999975311
Q ss_pred ---------------------eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ---------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|+||++|+|..+.+++|+.+..|++|+.|...
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 23599999999999999999999999999998754
No 57
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.84 E-value=4.6e-05 Score=73.38 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=31.2
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.|+||++|+|..+.+++|+.|..|++|+.|...+
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 4899999999999999999999999999997643
No 58
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.83 E-value=2.7e-05 Score=85.97 Aligned_cols=66 Identities=26% Similarity=0.548 Sum_probs=61.8
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
-.-|++++|+|+.|+.|..||+-+|||.|||.+.+.+..+|+| +...++|+.+..|++|+.++-++
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 3579999999999999999999999999999999999999988 78889999999999999998754
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.81 E-value=4.4e-05 Score=63.48 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=38.6
Q ss_pred eEEEEEEc-cCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC
Q 021956 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 104 G~I~~w~v-~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
|.|..+.. ++|+.|++||+|++||++|+..+|.||.+|+|.+++-.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 44444433 66999999999999999999999999999999988533
No 60
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.76 E-value=4.4e-05 Score=65.86 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred eEEEeecCCCCCCceeEEEEEEcc-CCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~-eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~ 150 (305)
...|=|-+.... .=|.|..+.+. +|+.|++||.|+.||++|+..+|.||.+|+|.+++..-
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 344444444332 24677777776 89999999999999999999999999999999988654
No 61
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.68 E-value=6.9e-05 Score=73.77 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=54.1
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
..|.|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999985310
Q ss_pred ---------------------eeEEecCCCcEEEEEeeCCCCeeecCce--EEEEec
Q 021956 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVV 165 (305)
Q Consensus 132 ---------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~--La~i~~ 165 (305)
...|+||++|+|.+.++++|+.|..|+. |+.|..
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 1239999999999999999999999984 666643
No 62
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.66 E-value=0.00013 Score=71.80 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.6
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..|.||++|+|..+.+++|+.|..|++|+.|...+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 36999999999999999999999999999987543
No 63
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.63 E-value=9e-05 Score=72.47 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=54.8
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
..|+|.++++++||.|++||+|+.|+....
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999986311
Q ss_pred ---------------------eeEEecCCCcEEEEEeeCCCCeeecC--ceEEEEec
Q 021956 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV 165 (305)
Q Consensus 132 ---------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG--~~La~i~~ 165 (305)
...|+||++|+|.+.++++|+.|..| ++|+.|..
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~ 206 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence 12499999999999999999999985 57887764
No 64
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.63 E-value=0.00018 Score=60.79 Aligned_cols=56 Identities=29% Similarity=0.370 Sum_probs=44.9
Q ss_pred ccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC---CCCeee---cCc-eEEEEecC
Q 021956 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIVK---VGE-TLLKLVVG 166 (305)
Q Consensus 111 v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~---~Gd~V~---vG~-~La~i~~~ 166 (305)
.+.|+.|++||+|++||++|...+|.||.+|+|.+++.+ ..+.+. -|+ -|+.|...
T Consensus 45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 367999999999999999999999999999999999544 334444 343 67777653
No 65
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.61 E-value=5e-05 Score=74.14 Aligned_cols=41 Identities=54% Similarity=0.771 Sum_probs=38.1
Q ss_pred CcccChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 201 ~~~AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
+..++|++|++|+++|||++.|+|+|++|||+++||.+|..
T Consensus 5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~ 45 (347)
T PRK14843 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKD 45 (347)
T ss_pred cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhcc
Confidence 34578999999999999999999999999999999999875
No 66
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.60 E-value=0.00013 Score=69.78 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.1
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 4699999999999999999999999999999653
No 67
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.57 E-value=0.00011 Score=71.83 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=54.5
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
..|.|.++++++||.|++||+|++|+....
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 479999999999999999999999986310
Q ss_pred ---------------------eeEEecCCCcEEEEEeeCCCCeeecCc--eEEEEec
Q 021956 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 165 (305)
Q Consensus 132 ---------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~--~La~i~~ 165 (305)
...|+||++|+|.+.++++|+.|..|+ +|+.|..
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 204 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR 204 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence 135999999999999999999999985 5777654
No 68
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.41 E-value=0.00032 Score=69.67 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=53.7
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCce--------------------------------------------------
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------------------------------------------------- 131 (305)
.+|.|.++++++||.|++||+|++|+....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 479999999999999999999999976310
Q ss_pred ---------------------eeEEecCCCcEEEEEeeCCCCeeecCc--eEEEEec
Q 021956 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 165 (305)
Q Consensus 132 ---------------------~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~--~La~i~~ 165 (305)
...|+||++|+|....++.|+.|..|+ .|+.|..
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 125999999999999999999999985 5666543
No 69
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.38 E-value=0.00018 Score=50.97 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.4
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 37999999999999999999999998754
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.38 E-value=0.00036 Score=49.45 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.4
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+..|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 46789999999999999999999999999999864
No 71
>PRK12784 hypothetical protein; Provisional
Probab=97.36 E-value=0.0011 Score=51.49 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=58.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc-eeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK-~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.|+|.++++.+++.|-+.+.|+-|+++. .-..|.-..+|.|.-+.+.+|+.|..+.+|+.++++
T Consensus 13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 6999999999999999999999999854 455688899999999999999999999999999864
No 72
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.36 E-value=0.00053 Score=66.63 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=25.3
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
..|.|.++++++||.|++||+|++++.
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 369999999999999999999999986
No 73
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.36 E-value=0.00024 Score=60.03 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=36.1
Q ss_pred ccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC
Q 021956 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 111 v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
.++|+.|++||+++.||++|+..+|.||.+|+|.+++-.
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 368999999999999999999999999999999998754
No 74
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.19 E-value=0.0003 Score=65.97 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=20.1
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
.+|.| +|+|++||.|++||+|+++++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 36999 999999999999999999986
No 75
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.16 E-value=0.001 Score=63.21 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=27.2
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.|+||++|+|..+.+.+|+.|.. ++|+.|..
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~ 236 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD 236 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence 47899999999999999999986 78888765
No 76
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.00 E-value=0.0015 Score=54.70 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=34.8
Q ss_pred eEEEEEE-ccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC
Q 021956 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 104 G~I~~w~-v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
|.|+.+. .++|+.|++|++++.||+.|...++.+|.+|+|.+++-+
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 4444443 466999999999999999999999999999999988643
No 77
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.64 E-value=0.0065 Score=57.09 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=51.3
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
+|.+.. +++.||.|++||+|+.|+. .+|.||.+|+|. =++++|-.|+.|.-|++|+.-.
T Consensus 172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECCCC
Confidence 566644 9999999999999999975 699999999885 5678999999999999998744
No 78
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0023 Score=54.45 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.0
Q ss_pred eEEEEE-EccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEee
Q 021956 104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (305)
Q Consensus 104 G~I~~w-~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v 148 (305)
|.|+-+ +.+.|+.|++|+.|+.||+-|...+|.+|.+|.|.+++-
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~ 84 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNE 84 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEech
Confidence 444433 357899999999999999999999999999999988763
No 79
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.44 E-value=0.0054 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.|.+|+.|+|.++++++||.|+.|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5899999999999999999999999999998654
No 80
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.35 E-value=0.0073 Score=55.23 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.0
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 369999999999999999999999999988753
No 81
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.28 E-value=0.015 Score=55.59 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=47.4
Q ss_pred eEEEEEEccCCCEEecCCeEEEEec---CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEt---dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
+=+.+.+++.||.|++||+|++|=. +....++.||.+|+|. .....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence 3455778999999999999999854 4467889999999994 45566789999999876
No 82
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.97 E-value=0.027 Score=53.37 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=45.7
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEec--CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEt--dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.|.+ +.+++.||.|++||+|++|-. .....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 227 ~G~~-~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLL-RSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEE-EEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 4554 679999999999999999954 2334789999999994 45566688888888876
No 83
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.95 E-value=0.025 Score=55.50 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=46.2
Q ss_pred eEEEEEEccCCCEEecCCeEEEEec----CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEt----dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
|=+.+.+++.||.|++||+|++|-. +....+|.||.+|+| +.....-.|..|+.|+.|
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI 358 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence 4455889999999999999999843 223444699999998 455677789999999876
No 84
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.90 E-value=0.014 Score=47.44 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
-|.-.+-.|++||.|++||.|++.+. .....|.|+.+|+|..|.-.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 35556789999999999999999864 55789999999999987643
No 85
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.70 E-value=0.043 Score=52.75 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=46.3
Q ss_pred eEEEEEEccCCCEEecCCeEEEEec----CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEt----dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
+-+...+++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 4455788999999999999999854 24567899999999954 34445688888888774
No 86
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.70 E-value=0.02 Score=56.34 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=30.5
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
|+||.+|+|.+..++.|+.|..|.+|+.+...+
T Consensus 211 IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 211 IRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred EECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 899999999999999999999999999887643
No 87
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.66 E-value=0.039 Score=53.57 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=46.4
Q ss_pred eEEEEEEccCCCEEecCCeEEEEec----CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEt----dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
+=+...+++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 3344788999999999999999854 23567899999999955 4566788899988876
No 88
>PRK06748 hypothetical protein; Validated
Probab=95.65 E-value=0.019 Score=45.22 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=31.3
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEec-C
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV-G 166 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~-~ 166 (305)
.|.||..|.|.++++++||.|+.|++|+.|+. +
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMd 39 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETID 39 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 48999999999999999999999999999998 5
No 89
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.48 E-value=0.024 Score=40.71 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=29.4
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+.||.+|+|.++++++|+.|+.|++|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 6899999999999999999999999999975
No 90
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.45 E-value=0.031 Score=41.64 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=31.6
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.|.||..|+|.++++++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5889999999999999999999999999998754
No 91
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.23 E-value=0.046 Score=51.55 Aligned_cols=56 Identities=30% Similarity=0.360 Sum_probs=41.4
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCce--eeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKA--TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~--~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
|..-+.+|+|||.|+.||+|++ ||. .+-+.||.+|+|.+|.- |++=..-+++..++
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~rR~l~svvI~~d 95 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GERRKLLSVVIEAD 95 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCCceEEEEEEEec
Confidence 4445889999999999999996 553 56689999999998886 55433334444444
No 92
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.17 E-value=0.03 Score=47.98 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=31.8
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
...|+||..|+|.+++|++||.|+.||+|+.|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 4569999999999999999999999999999985
No 93
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.98 E-value=0.06 Score=51.01 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=39.7
Q ss_pred eEEEEEEccCCCEEecCCeEEEEec--CceeeEEecCCCcEEEEEeeCCCCeeecCceE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEt--dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~L 160 (305)
+-+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 4455788899999999999998832 2446789999999985543 33455666554
No 94
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.63 E-value=0.12 Score=58.00 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred CceEEEeecCCCCCCc----------eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeec
Q 021956 87 SGIVDVPLAQTGEGIA----------ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKV 156 (305)
Q Consensus 87 ~~~~~i~lP~lges~~----------eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~v 156 (305)
++...|++-.+|+-.. +|.+.++.++.++.+..++.....+.. ....|.||..|+|.++++++||.|+.
T Consensus 1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~ 1098 (1143)
T TIGR01235 1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNK 1098 (1143)
T ss_pred CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCC
Confidence 3445566666665433 356777788888887777765554322 23569999999999999999999999
Q ss_pred CceEEEEecC
Q 021956 157 GETLLKLVVG 166 (305)
Q Consensus 157 G~~La~i~~~ 166 (305)
|++|+.|+..
T Consensus 1099 Gd~L~~iEam 1108 (1143)
T TIGR01235 1099 GDPLVVLEAM 1108 (1143)
T ss_pred CCEEEEEEec
Confidence 9999999874
No 95
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.51 E-value=0.028 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=10.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIE 127 (305)
.|.|.+++|++||.|++||+|++|+
T Consensus 9 ~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 9 GGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp -EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred CeEEEEEEccCcCEEeCCCEEEEEE
Confidence 3555555555555555555555554
No 96
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.48 E-value=0.059 Score=42.62 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=17.2
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
|+||++|+|..+.+++|+.|..|++|+.|..
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 4555555555555555555555555555543
No 97
>PRK07051 hypothetical protein; Validated
Probab=94.46 E-value=0.053 Score=41.79 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=25.0
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEe
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIE 127 (305)
-.+|+|.++++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 358999999999999999999999985
No 98
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=94.37 E-value=0.066 Score=50.89 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=35.5
Q ss_pred EEecCceeeEEecCCC---cEEEEEeeCCCCeeecCceEEEEecC
Q 021956 125 AVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 125 eIEtdK~~~eI~Ap~~---Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.|+.......|.++.+ |+|.+++|++|+.|+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 4444445567889999 99999999999999999999999875
No 99
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.35 E-value=0.039 Score=51.14 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..|.++.+|+|.+|+|++|+.|+.|++|+.|+..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4688999999999999999999999999999864
No 100
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.03 E-value=0.15 Score=49.67 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=45.9
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC---ceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD---KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd---K~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
++-+++.+++.||.|++||+|+.|-.. +...||+|+.+|+|...... ..|+.|+.+..+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~--~~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL--RLVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec--cccCCCCeeeeec
Confidence 355679999999999999999988664 77899999999999776422 3455555555544
No 101
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.01 E-value=0.096 Score=44.60 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=32.6
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 56799999999999999999999999999999864
No 102
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.92 E-value=0.12 Score=51.39 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=43.5
Q ss_pred EccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.++.|+.-..-+....|+. .-...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 66 ~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 66 TATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 3444444444445566766 3567799999999999999999999999999999864
No 103
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.87 E-value=0.1 Score=50.30 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=31.6
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 57889999999999999999999999999999864
No 104
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=93.81 E-value=0.13 Score=45.29 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=44.0
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
|.++--+.||+ +..++ +-+.|-.|.+||.++-+|+-|+..+|.+|.+|.|.+|+-+
T Consensus 71 It~~A~~~LGd----vv~ve-LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 71 ITDFAQEHLGD----VVYVE-LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred hhhhhhhhcCc----eEEEE-cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 44445555554 33333 3478899999999999999999999999999999998754
No 105
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.75 E-value=0.075 Score=50.44 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=32.1
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 57799999999999999999999999999999864
No 106
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.67 E-value=0.11 Score=39.46 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=28.9
Q ss_pred EEecCCCcEEEE------EeeCCCCeeecCceEEEEecCC
Q 021956 134 EITSRYKGKVAQ------LLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 134 eI~Ap~~Gvv~~------i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
+|.+|.-|.+.. +++++|+.|..|++|+.|+...
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence 577888776655 9999999999999999998753
No 107
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=93.65 E-value=0.076 Score=49.71 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=27.7
Q ss_pred EEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 124 ~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.|+. ....+.++.+|.| ++++++|+.|+.|++|+.++..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 34554 4567899999999 9999999999999999999864
No 108
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.46 E-value=0.13 Score=44.82 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=35.2
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCceee-EEecCCCcEEEEEee
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLLH 148 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~-eI~Ap~~Gvv~~i~v 148 (305)
.+|..+-..+.+||.|.+||.|+.+.|.|-.+ -++||.+|+|.-+.-
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 37778889999999999999999999999754 599999999976653
No 109
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=93.44 E-value=0.19 Score=48.82 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=41.0
Q ss_pred EEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 109 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 109 w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.++.|+....=..-+.|+.. -...|.++.+|.|.++++++|+.|+.|++|+.++..
T Consensus 39 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 39 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 344444433322233445443 345899999999999999999999999999999764
No 110
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=93.44 E-value=0.16 Score=49.73 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred EccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.++.|+....-+....|+.. ....|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 44555544455556667654 367799999999999999999999999999999864
No 111
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.02 E-value=0.16 Score=44.27 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=32.5
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999998643
No 112
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.00 E-value=0.18 Score=50.74 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=31.5
Q ss_pred eeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 131 ~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
-...|.+..+|+|.+++|++||.|+.|++|+.++..
T Consensus 58 ~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 58 ILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred ceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 345688999999999999999999999999999864
No 113
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.94 E-value=0.23 Score=48.67 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=42.4
Q ss_pred EccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.++.++.-..-...+.|+.. ...+|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 33444433333444566654 456899999999999999999999999999999764
No 114
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.89 E-value=0.18 Score=46.98 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 46799999999999999999999999999999754
No 115
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.84 E-value=0.18 Score=49.01 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=32.9
Q ss_pred EecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 126 VQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 126 IEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
|...+....|.++.+|+|.+++|++|+.|+.|++|+.++...
T Consensus 37 v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 37 VVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 444555566788888999899999999889999998887653
No 116
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.69 E-value=0.14 Score=51.88 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=37.1
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEee
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v 148 (305)
.|.--+..|++||+|++||+|++-+.. ....+.||.+|+|+.|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 355567899999999999999975432 578899999999999953
No 117
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.61 E-value=0.24 Score=48.94 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=39.1
Q ss_pred EEEccCCCEEecCCeEEEEecCce--eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDKA--TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK~--~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..+|++||.|++||+|+| ||- .+-++||.+|+|..|+- |+.=---+++..++.+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R--G~KRvLqsVVI~~~g~ 97 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR--GEKRVLQSVVIKVEGD 97 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec--ccceeeeeEEEEecCC
Confidence 568999999999999998 443 56699999999998874 4332223455555443
No 118
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.28 E-value=0.25 Score=49.05 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=29.9
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.++.+|+|.+++|++|+.|+.|++|+.|+..
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 34788899999999999999999999999998864
No 119
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.08 E-value=0.27 Score=49.88 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=36.4
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEee
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v 148 (305)
|..-+..|++||+|++||.|++-+.. ....+.||.+|+|+.|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 55567899999999999999965433 568899999999999953
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=92.02 E-value=0.22 Score=47.74 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.8
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.|.++.+|.|.++++++|+.|+.|++|+.++..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 5689999999999999999999999999999874
No 121
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.88 E-value=0.22 Score=49.15 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.0
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+.|.++.+|+|.+++|++|+.|+.|++|+.|+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 67889999999999999999999999999999864
No 122
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.78 E-value=0.23 Score=47.45 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999864
No 123
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.67 E-value=0.71 Score=48.50 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.3
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.+|.||..|+|.++++++||.|+.|++|+.++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999999753
No 124
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.24 E-value=0.21 Score=48.47 Aligned_cols=31 Identities=39% Similarity=0.555 Sum_probs=27.6
Q ss_pred EecCCCcEEEEEee-CCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v-~~Gd~V~vG~~La~i~~ 165 (305)
|.||++|+|..+.+ .+|+.|..|++|+.|..
T Consensus 274 i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 274 IRSPVDGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred EECCCCcEEEEEEEEccCceecCCCeeEEEec
Confidence 89999999998876 69999999999999865
No 125
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=91.23 E-value=0.46 Score=46.84 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 124 ~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..|+. .-..+|.+..+|+|.++++++||.|+.|++|+.|+..
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 44544 3467899999999999999999999999999999864
No 126
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.17 E-value=0.21 Score=50.23 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=26.7
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
...|.|.+++|++||.|++||+|+.++...
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 356999999999999999999999998643
No 127
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=91.10 E-value=0.24 Score=49.80 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=35.7
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEe
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~ 147 (305)
|.--+..|++||+|+.||.|++.+ ......+.|+.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 344467899999999999999873 3357889999999999875
No 128
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.03 E-value=0.8 Score=43.61 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=27.0
Q ss_pred EEEEEEccCCCEEecCCeEEEEec--CceeeEEecCCCcEEEEE
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQL 146 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEt--dK~~~eI~Ap~~Gvv~~i 146 (305)
=|.+.+++.||.|++||+|++|-. .....++.||.+|+|.-+
T Consensus 240 Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 240 GLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 344667777777777777777743 122455777777777544
No 129
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=91.01 E-value=0.25 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.6
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEe
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIE 127 (305)
+-.+|+|.+|+++.||.|..||+|++|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 4468999999999999999999999985
No 130
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.61 E-value=0.27 Score=48.72 Aligned_cols=31 Identities=39% Similarity=0.587 Sum_probs=27.6
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
|.||++|+|..+.+.+|+.|..|++|+.|..
T Consensus 256 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 256 IVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred EEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 7889999999999999999999999999854
No 131
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=90.58 E-value=0.65 Score=43.38 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=48.0
Q ss_pred eEEEEEEccCCCEEecCCeE--EEEe-c-CceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 104 CELLKWFVKEGDEIEEFQPL--CAVQ-S-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L--~eIE-t-dK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+-+....++.||.|++||+| .++- . +....++.++.+|+| +.....-.|..|+.|+.+..
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 34458899999999999999 5442 2 344568999999999 67778889999999998753
No 132
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=90.23 E-value=0.32 Score=49.56 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+-.+|+|.+|++++||.|+.||+|+.|+.+
T Consensus 139 Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 139 SPASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred cCCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 346899999999999999999999999754
No 133
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.19 E-value=0.27 Score=37.83 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=21.5
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
++-+.=..++++.||.|++||+|++|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 344444588999999999999999986644
No 134
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.07 E-value=0.34 Score=42.21 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEe
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIE 127 (305)
+-.+|+|.+|+++.||.|..||+|++|+
T Consensus 128 a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 128 ADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred cCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 3468999999999999999999999885
No 135
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=90.05 E-value=0.55 Score=46.74 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=42.3
Q ss_pred EccCCCEEecCCeEEEEecCc-eeeEEecCCCcEEEEEe-eCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtdK-~~~eI~Ap~~Gvv~~i~-v~~Gd~V~vG~~La~i~~~ 166 (305)
.++.++.-..-+..+.|+.+. ....|.++++|.|.+++ +.+||.|+.|++|+.|+..
T Consensus 100 ~v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 100 TVTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 344444333334455666443 35679999999999998 8999999999999999853
No 136
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.47 E-value=0.76 Score=36.19 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=25.6
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.+|.|..+.+++|+.|..|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4799999999999999999999999764
No 137
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=89.14 E-value=1.1 Score=41.44 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=31.1
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
...+.+...|.|.++++++|+.|+.|++|+.++.
T Consensus 66 ~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 66 SVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 3478888999999999999999999999999987
No 138
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.82 E-value=1.3 Score=46.46 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=32.8
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
...|.||..|+|.++.+++|+.|+.|++|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 467999999999999999999999999999998643
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=88.56 E-value=0.55 Score=44.59 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=25.7
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEe
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIE 127 (305)
+-.+|+|.+|++++||.|..||+|++||
T Consensus 246 AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 246 ADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 4468999999999999999999999985
No 140
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=88.24 E-value=0.49 Score=43.72 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=25.9
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999997
No 141
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=88.03 E-value=1.1 Score=39.43 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--+-+|++||.|++||.|++++-+.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 4666788999999999999999998754
No 142
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=87.60 E-value=0.72 Score=43.56 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=26.8
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
.+|+|.++++++||.|..|++|+.|+.++
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 58999999999999999999999998754
No 143
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.54 E-value=0.96 Score=48.37 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=35.1
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEe
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~ 147 (305)
|.--+..|++||.|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 444567999999999999999653 2256889999999999875
No 144
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.82 E-value=1.5 Score=45.98 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.7
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
...|.||..|+|.++++++||.|+.|++|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 447999999999999999999999999999998643
No 145
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=86.70 E-value=1.5 Score=37.36 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=14.2
Q ss_pred eeCCCCeeecCceEEEEec
Q 021956 147 LHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 147 ~v~~Gd~V~vG~~La~i~~ 165 (305)
++++|+.|+.|++|+.++-
T Consensus 89 ~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 89 LVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp SS-TTSEE-TTEEEEEE-H
T ss_pred EEeCCCEEECCCEEEEEcH
Confidence 6669999999999999875
No 146
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=86.57 E-value=0.83 Score=45.70 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.2
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCce
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~ 131 (305)
-.+|+|.++++++||.|..|++|+.|+....
T Consensus 51 p~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 51 PDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 4689999999999999999999999998643
No 147
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=86.56 E-value=1.8 Score=38.77 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=39.0
Q ss_pred EccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEE
Q 021956 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La 161 (305)
++++|+.|++||.+.-++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 56899999999999999876 5555666655 277899999999999664
No 148
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=86.22 E-value=2.6 Score=35.55 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.4
Q ss_pred EEeeCCCCeeecCceEEEEecC
Q 021956 145 QLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 145 ~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.++++||.|+.|++|+.++-+
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred EEEecCCCEEcCCCEEEEEcHH
Confidence 4578899999999999998753
No 149
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=86.12 E-value=1.8 Score=38.92 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=44.9
Q ss_pred eeEEEEEEc-cCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEE
Q 021956 103 ECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (305)
Q Consensus 103 eG~I~~w~v-~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~ 162 (305)
-|.|.-+.. ++|+.|++||.+..++= ..++.+--|.+-+. ++.+++|+.|..|+.|++
T Consensus 144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 455544433 69999999999999987 66666666655544 889999999999999874
No 150
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.84 E-value=1.8 Score=45.46 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.5
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..|.||..|.|.++++++||.|+.|++|+.++...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999999743
No 151
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=85.83 E-value=0.77 Score=35.98 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=18.7
Q ss_pred EEEEEccCCCEEecCCeEEEEec
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
-.+|++++||.|++||+|++++.
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 34799999999999999999975
No 152
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=85.78 E-value=0.93 Score=45.67 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=27.0
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+-.+|+|.++++++||.|+.|++|++|+..
T Consensus 92 Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 92 APASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred cCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 346899999999999999999999999764
No 153
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=85.57 E-value=2.1 Score=38.01 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=17.3
Q ss_pred eeCCCCeeecCceEEEEecC
Q 021956 147 LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 147 ~v~~Gd~V~vG~~La~i~~~ 166 (305)
++++||.|+.||+|+.++-+
T Consensus 107 ~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 107 IAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EecCCCEEeCCCEEEEEcHH
Confidence 67799999999999999854
No 154
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=85.16 E-value=1.1 Score=44.91 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+..+|+|.++++++||.|+.|++|+.|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 446899999999999999999999999865
No 155
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=85.09 E-value=0.92 Score=46.75 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=36.0
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEe
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~ 147 (305)
|.=...+|++||.|.+||+|.+-+. ...-+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3334678999999999999997655 78889999999999998
No 156
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=85.00 E-value=2.2 Score=38.66 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=41.4
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCce-EEE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET-LLK 162 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~-La~ 162 (305)
+.|.. ++++|+.|++||.+..++-. .++++--|.+ .++.+++|++|..|+. |+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 34433 57899999999999999876 4566666665 2789999999999984 444
No 157
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=84.72 E-value=1.1 Score=33.04 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.1
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEE
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAV 126 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eI 126 (305)
.+|+|.+++++.|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4899999999999999999999874
No 158
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=84.70 E-value=1.2 Score=44.74 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+-.+|+|.++++++||.|..|++|++|+.+.
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3468999999999999999999999998754
No 159
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=84.00 E-value=2 Score=38.20 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.1
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--+++|++||+|++||+|++++-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4666799999999999999999998643
No 160
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=83.87 E-value=1.3 Score=44.41 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=28.8
Q ss_pred CCCCceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 98 GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 98 ges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
-++..+|+|.+|++++||.|+.|++|++|+.++
T Consensus 44 v~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 44 ITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 345578999999999999999999999998654
No 161
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.79 E-value=1.5 Score=43.17 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.8
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+.|.+..+|+|.+++|+.++.|+.|++|+.|+..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence 45688999999999999999999999999999875
No 162
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=82.92 E-value=1.5 Score=46.26 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--+.+|++||+|++||+|++++-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 5666689999999999999999998653
No 163
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.86 E-value=3.4 Score=34.73 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.7
Q ss_pred EEeeCCCCeeecCceEEEEec
Q 021956 145 QLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 145 ~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+.++++||.|+.|++|+.++-
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEEecCCCEEcCCCEEEEEcH
Confidence 567889999999999999985
No 164
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.76 E-value=4.7 Score=45.62 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=32.2
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.||..|+|.++++++||.|+.|++|+.++..
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 35699999999999999999999999999999864
No 165
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=82.36 E-value=1.5 Score=43.51 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.2
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
..|+|.+++|++||+|+.|+.|+.|+..
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5799999999999999999999999875
No 166
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.19 E-value=2.9 Score=36.15 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=37.9
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeE-EecCCCcEEEEEe
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLL 147 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~e-I~Ap~~Gvv~~i~ 147 (305)
||-++..-+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+.
T Consensus 99 EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 99 EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 78888888999999999999999999887655 7889999886543
No 167
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.17 E-value=1.2 Score=37.36 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.2
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 455568999999999999999999754
No 168
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=82.09 E-value=1.6 Score=30.35 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.4
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEE
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAV 126 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eI 126 (305)
..|++.++++++|+.|..|+.|++|
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3688999999999999999999874
No 169
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=81.74 E-value=1.3 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466679999999999999999999754
No 170
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=81.20 E-value=3.6 Score=36.20 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.6
Q ss_pred cEEEEEeeCCCCeeecCceEEEEecC
Q 021956 141 GKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 141 Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
|.-=+.++++||.|+.||+|..++-+
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHH
Confidence 33335578899999999999999864
No 171
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=79.53 E-value=2.4 Score=42.79 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=27.0
Q ss_pred CceeEEEEEEccCCCE-EecCCeEEEEecCc
Q 021956 101 IAECELLKWFVKEGDE-IEEFQPLCAVQSDK 130 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~-V~~Gd~L~eIEtdK 130 (305)
-.+|+|.++++++||. |+.|++|++|+.++
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 3579999999999999 99999999998654
No 172
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=79.32 E-value=2.4 Score=48.05 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.3
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...|.||..|+|.++++++||.|+.|++|+.|+..
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 45699999999999999999999999999999764
No 173
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=78.63 E-value=2.4 Score=44.85 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--+.+|++||+|++||+|++++-+.
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4555589999999999999999998643
No 174
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=78.19 E-value=1.5 Score=37.42 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.3
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--++++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 5666799999999999999999997643
No 175
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=77.42 E-value=6 Score=37.37 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=38.5
Q ss_pred cCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 112 KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 112 ~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
.+|+.|++||.+..++- ..++.+--+.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 217 ~~~~~v~kGee~G~F~f-GSTVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 217 YENLKLKKGEELGNFEM-GSTIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred cCCceEccccEeeEEcc-CCEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 45999999999999988 45665555544 34 6779999999999998764
No 176
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=76.21 E-value=3.4 Score=43.23 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.2
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.-.+.+|-.|+|..+.|++|+.|..||+|++++.
T Consensus 575 ~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 575 SGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CCceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 3458999999999999999999999999999985
No 177
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=76.00 E-value=3.3 Score=42.25 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.1
Q ss_pred CCceeEEEEEEccCCC-EEecCCeEEEEecCc
Q 021956 100 GIAECELLKWFVKEGD-EIEEFQPLCAVQSDK 130 (305)
Q Consensus 100 s~~eG~I~~w~v~eGD-~V~~Gd~L~eIEtdK 130 (305)
+..+|+|.++++++|+ .|+.|++|++|+.++
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 4568999999999995 799999999998654
No 178
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=75.68 E-value=6.7 Score=42.85 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
|-||..|+|.++.|+.|+.|+.||+|+.++.
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhh
Confidence 8899999999999999999999999999874
No 179
>PRK12784 hypothetical protein; Provisional
Probab=74.27 E-value=5.2 Score=31.38 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.2
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
+|.||+-|+|.++++.+++.|-.=+.|+.|+..+.
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 58999999999999999999999999999987554
No 180
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=72.84 E-value=5.8 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEccCCCEEecCCeEEEEec
Q 021956 108 KWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEt 128 (305)
.++|++|+.|++||+|++.+.
T Consensus 2423 ~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEecCCCEecCCCEEEEEcC
Confidence 678999999999999998764
No 181
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=72.26 E-value=4 Score=42.55 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCCceeEEEEEEccCCC-EEecCCeEEEEecC
Q 021956 99 EGIAECELLKWFVKEGD-EIEEFQPLCAVQSD 129 (305)
Q Consensus 99 es~~eG~I~~w~v~eGD-~V~~Gd~L~eIEtd 129 (305)
++..+|+|.++++++|| .|+.|++|+++..+
T Consensus 159 ea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 159 ECMEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred cCCCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 34568999999999996 79999999988543
No 182
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=71.36 E-value=5.5 Score=39.62 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.6
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCce
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~ 131 (305)
-.+|+|.++++++|+.|..|++|+.|+.++.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 3589999999999999999999999987553
No 183
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=70.88 E-value=5.4 Score=42.45 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.3
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+|+--+.+|++||+|++||+|++++-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4555688999999999999999998654
No 184
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=70.71 E-value=7.4 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=36.2
Q ss_pred cCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 112 KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 112 ~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.+......+..|-.+..-+..+---....|.-.+..|++||.|..||.|+..+.
T Consensus 10 ~~~K~~s~~~~i~~~~~p~~v~ipL~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 10 PEHKELSKDKPIEEAPLPKKVVIPLRQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred CCccccccCCCeEECCCcCEEEEECcccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 334445556666655543333333345567777899999999999999999754
No 185
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=70.45 E-value=5.7 Score=37.62 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=29.1
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+.-|+||.+|++.. .++-||.|+.||+|+.|..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45599999998854 9999999999999999965
No 186
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=70.41 E-value=10 Score=40.41 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCeEEEEecCceeeEEecCCCcEEEEE-----------------------------------eeCCCCeeecCceEEEEe
Q 021956 120 FQPLCAVQSDKATIEITSRYKGKVAQL-----------------------------------LHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 120 Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i-----------------------------------~v~~Gd~V~vG~~La~i~ 164 (305)
||-++..=++ ..|.||.+|+|..+ ++++||.|+.||+|++++
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 6666655443 46888999888776 466888999999998887
Q ss_pred cC
Q 021956 165 VG 166 (305)
Q Consensus 165 ~~ 166 (305)
-+
T Consensus 603 ~~ 604 (648)
T PRK10255 603 LD 604 (648)
T ss_pred HH
Confidence 54
No 187
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=69.59 E-value=5.7 Score=36.85 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=37.5
Q ss_pred CCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEE
Q 021956 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (305)
Q Consensus 114 GD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~ 162 (305)
|+.|++||.|..++- ..++.+--+.+-+--+..+++|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 999999999999987 466666666443323677899999999999864
No 188
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=67.47 E-value=6.9 Score=37.25 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=29.9
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..-+.||.+|++ ...++.|+.|+.||+|++|..-
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 556899999987 6789999999999999999763
No 189
>COG3608 Predicted deacylase [General function prediction only]
Probab=67.41 E-value=9.2 Score=37.52 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=34.0
Q ss_pred CeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 121 QPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 121 d~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
..+...+++ ..-+.||.+|.| ..+++.||.|+.|++|+.|..-
T Consensus 247 ~~~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 247 TKGLALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred cceeecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 333444444 445999999977 8999999999999999999863
No 190
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=66.31 E-value=8.6 Score=36.17 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=37.2
Q ss_pred ccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 111 v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
..+|+.|++||.+..++-. .++.+--+.+-+--...+.+|+.|..|+.|+.+
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4579999999999988876 555555554432224567888999999888653
No 191
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=64.79 E-value=10 Score=44.05 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=59.4
Q ss_pred ceEEEeecCCCCC---Cc-eeEEEEEEccC---CCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceE
Q 021956 88 GIVDVPLAQTGEG---IA-ECELLKWFVKE---GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (305)
Q Consensus 88 ~~~~i~lP~lges---~~-eG~I~~w~v~e---GD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~L 160 (305)
...++.+-.|+.+ +. +|+.-..+.++ |-.+..|--.|.+|.+.-...+++|..|.+.+.+|+.|+.|.+|++-
T Consensus 634 s~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~Y 713 (2196)
T KOG0368|consen 634 SEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPY 713 (2196)
T ss_pred cEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCee
Confidence 3456666666543 11 34444444433 55678899999999888888899999999999999999999999999
Q ss_pred EEEec
Q 021956 161 LKLVV 165 (305)
Q Consensus 161 a~i~~ 165 (305)
|+|+.
T Consensus 714 AeiEv 718 (2196)
T KOG0368|consen 714 AEIEV 718 (2196)
T ss_pred eeheh
Confidence 98875
No 192
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=64.66 E-value=8.1 Score=36.95 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=29.3
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
..-+.||.+|.+ ...++.||.|+.||+|+.|-.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~d 261 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVD 261 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeC
Confidence 456899999988 677899999999999999976
No 193
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.65 E-value=6.8 Score=37.55 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=22.1
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.-..|++++||.|+.||+|++++.+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4458999999999999999999964
No 194
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.39 E-value=9.2 Score=36.20 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.3
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.-++|+.+|.+. ..++.||.|+.||+|+.|..-
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECC
Confidence 579999999885 689999999999999999763
No 195
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.18 E-value=9.4 Score=36.13 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=29.5
Q ss_pred eeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 131 ~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
...-+.||.+|.+ ...++.|+.|+.|++|+.|-.
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 4456899999977 677899999999999999965
No 196
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=62.99 E-value=15 Score=38.89 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=40.5
Q ss_pred eeEEEEEEccCCCEEec----CCeEEEEecCceeeEEecCCCcEEEEE--------------------------------
Q 021956 103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~----Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i-------------------------------- 146 (305)
+|++..+ .++-|.|=. ||-++..=++ ..+.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 5666554 344444433 6666654433 46788888877765
Q ss_pred ---eeCCCCeeecCceEEEEecC
Q 021956 147 ---LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 147 ---~v~~Gd~V~vG~~La~i~~~ 166 (305)
++++||.|+.||+|++++-+
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred eEEEecCcCEEcCCCEEEEecHH
Confidence 56699999999999998864
No 197
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=62.72 E-value=22 Score=27.50 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.+|+|+.+.-.. ...-.+.|+...-...+... +..+.++.|+.|+.|+.|+.+...
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecCCC
Confidence 3467776665533 22333344443333333322 455668899999999999988743
No 198
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=62.45 E-value=14 Score=39.23 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=42.6
Q ss_pred ceeEEEEEEccCCCEEec----CCeEEEEecCceeeEEecCCCcEEEEE-------------------------------
Q 021956 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~----Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i------------------------------- 146 (305)
-+|++..+ -++-|.|=. ||-++..=++ .++.||++|+|..+
T Consensus 485 ~~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 35666554 355555544 6767655443 47888999888765
Q ss_pred ----eeCCCCeeecCceEEEEecC
Q 021956 147 ----LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 147 ----~v~~Gd~V~vG~~La~i~~~ 166 (305)
++++||+|+.||+|++++-+
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEcHH
Confidence 55699999999999998864
No 199
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=62.37 E-value=14 Score=38.27 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=33.6
Q ss_pred EecCceeeEEecCCCcEEEEE------------------------eeCCCCeeecCceEEEEecC
Q 021956 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 126 IEtdK~~~eI~Ap~~Gvv~~i------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
+...+.+.+|.|+.+|+|..+ +++.||.|+.|++|+.|-.+
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 444566888999999998876 56799999999999999743
No 200
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=61.74 E-value=8.3 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=19.6
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
+-+....|++||.|++||.|+.+....
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred eccccccceecccccCCCEEEecCCCC
Confidence 334466799999999999999998543
No 201
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=61.61 E-value=10 Score=37.34 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.9
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.-+.||.+|.+ ...++.||.|+.|++|+.|..-
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~ 322 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDP 322 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 34899999977 6788999999999999999763
No 202
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=60.15 E-value=14 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=38.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEe-------eCCCCeeecCceEEEE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLKL 163 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~-------v~~Gd~V~vG~~La~i 163 (305)
+|+-..+.+.|-... +...++.--.|-|..+|+|.++. |++||.|+.||+|..=
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 677777777765433 22233445678899999999875 5589999999998853
No 203
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.71 E-value=16 Score=35.14 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=30.2
Q ss_pred eeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 131 ~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
...-+.||.+|.+ ...++.|+.|+.|++|+.|..-
T Consensus 243 ~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 243 ARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 3456899999977 6789999999999999999763
No 204
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=58.91 E-value=8.3 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=29.8
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.|-+|..|+|.+|.|++|+.|+.|++|+++..
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 48899999999999999999999999999874
No 205
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.85 E-value=17 Score=34.21 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=32.5
Q ss_pred ccCCCEEec-CCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEE
Q 021956 111 VKEGDEIEE-FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (305)
Q Consensus 111 v~eGD~V~~-Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~ 162 (305)
++.|+.|.+ |++|++.. ..++.+|++|++ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 566889988 99999842 278999999965 4455666667776554
No 206
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=58.78 E-value=13 Score=35.52 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCEEecCCeEEEEecCceeeEEecCCCcEE-EEEeeCCCCeeecCceEEEEe
Q 021956 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKV-AQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 114 GD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv-~~i~v~~Gd~V~vG~~La~i~ 164 (305)
|..|++||.|..++= ..++.+--+.+ .+ -...+.+|+.|..|+.|+.+.
T Consensus 237 ~~~v~kGee~G~F~f-GStVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKL-GSTVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccC-CCeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 779999999999987 45665555544 33 134578999999999998754
No 207
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=58.61 E-value=12 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=29.2
Q ss_pred eeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 132 ~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
..-+.||.+|++ ...++.|+.|+.|++|+.|..
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEEC
Confidence 345999999988 588999999999999999976
No 208
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.13 E-value=13 Score=35.22 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.4
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
++.-.+|++++|+.|+.||+|++++-+
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 455668999999999999999999864
No 209
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.11 E-value=12 Score=35.71 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEccCCCEEecCCeEEEEecC
Q 021956 107 LKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 107 ~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.+|++++|+.|+.||+|++++-.
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 59999999999999999999864
No 210
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=55.60 E-value=10 Score=36.03 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEecCCCcEEEEEeeCCCCeeecCceEEEE
Q 021956 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (305)
Q Consensus 134 eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i 163 (305)
-+..++-|...+++|++||+|+.|++|++=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 356688899999999999999999999974
No 211
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=55.35 E-value=36 Score=39.24 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.9
Q ss_pred EEEccCCCEEecCCeEEEEecC-------ceeeEEecCCCcEE
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSD-------KATIEITSRYKGKV 143 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtd-------K~~~eI~Ap~~Gvv 143 (305)
-++|+.|+.|+.+|+|+|+-+. |+.-.|.|+.+|.|
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 3689999999999999999863 45567888888865
No 212
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=54.88 E-value=10 Score=38.64 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=21.8
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
++-+.=+.++++.||.|++||+|++|=.
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 4444445889999999999999998863
No 213
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=54.23 E-value=10 Score=38.53 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.5
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
++-+.=++++++.||.|++||+|++|=.
T Consensus 377 id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 377 IDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 4445556899999999999999998863
No 214
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=53.87 E-value=11 Score=38.40 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 139 YKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 139 ~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..|.|++...++||.+..|++|++||++-
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEeccc
Confidence 46889999999999999999999999863
No 215
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=53.76 E-value=20 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 138 p~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
+..|+ .++++.||.|+.|++|+.|-..+.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCCh
Confidence 34464 488999999999999999986543
No 216
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=53.07 E-value=12 Score=39.06 Aligned_cols=31 Identities=32% Similarity=0.585 Sum_probs=28.9
Q ss_pred EecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 135 I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+.+|..|+|.+++|++||.|..|+.|+.++.
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 7899999999999999999999999998764
No 217
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=52.42 E-value=16 Score=33.15 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.2
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
.+|.|..+++++|+.|..|++|+.|-.
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 379999999999999999999998753
No 218
>PRK04350 thymidine phosphorylase; Provisional
Probab=52.39 E-value=24 Score=36.47 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=34.1
Q ss_pred EecCceeeEEecCCCcEEEEE------------------------eeCCCCeeecCceEEEEecC
Q 021956 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 126 IEtdK~~~eI~Ap~~Gvv~~i------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
+...+...+|.|+.+|+|..| +++.||.|+.|++|+.|-.+
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 445567888999999999887 56699999999999999743
No 219
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.82 E-value=15 Score=35.19 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.7
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-.+|++++|+.|+.||+|++++.+
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 459999999999999999999864
No 220
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.16 E-value=16 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-.+|++++|+.|++||+|++++..
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G~ 85 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQGN 85 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEeC
Confidence 359999999999999999999863
No 221
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.41 E-value=17 Score=34.77 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEccCCCEEecCCeEEEEecC
Q 021956 107 LKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 107 ~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.+|++++|+.|++||+|++++.+
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 69999999999999999999864
No 222
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=50.20 E-value=18 Score=35.89 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecCceeeEE--ecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI--~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
+.+..|.-..+..|++||.+..++- ..++-+ +.+. .+ +..+++|+.|..|+.|+.+..
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~-GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRM-GSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecCCCCcccccceeeEecc-CCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 4455566666789999999999987 444333 3443 23 556889999999999987654
No 223
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=50.13 E-value=14 Score=37.25 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=23.4
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
++-+.=+.++++.||.|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 44455568999999999999999998643
No 224
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.28 E-value=18 Score=34.82 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.3
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-.+|++++|+.|++||+|++++.+
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEc
Confidence 347999999999999999999864
No 225
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=48.84 E-value=34 Score=34.03 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=36.7
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEe-------eCCCCeeecCceEEE
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLK 162 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~-------v~~Gd~V~vG~~La~ 162 (305)
+|+-..+.+.|.....+ .+.+..--.|-|..+|+|.++. |++||.|+.||+|..
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 67777777776643211 1122233568889999999875 558899999999885
No 226
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=48.79 E-value=18 Score=34.26 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=21.8
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.-++|++++|+.|+.||+|++++.+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEc
Confidence 3458999999999999999999864
No 227
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=48.74 E-value=18 Score=35.94 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceeEEEEE-------EccCCCEEecCCeEEE
Q 021956 102 AECELLKW-------FVKEGDEIEEFQPLCA 125 (305)
Q Consensus 102 ~eG~I~~w-------~v~eGD~V~~Gd~L~e 125 (305)
.+|.|+++ .|++||.|++||+|+.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 47777765 5789999999999984
No 228
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.70 E-value=28 Score=35.48 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=30.9
Q ss_pred cCceeeEEecCCCcEEEEE-------------------------------eeCCCCeeecCceEEEEecC
Q 021956 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 128 tdK~~~eI~Ap~~Gvv~~i-------------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
.-+-..+|.|+.+|+|..+ +++.||.|+.|++|+.|-..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 3455777888888888776 55699999999999999743
No 229
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=48.49 E-value=28 Score=36.04 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.8
Q ss_pred EecCceeeEEecCCCcEEEEE------------------------eeCCCCeeecCceEEEEecC
Q 021956 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 126 IEtdK~~~eI~Ap~~Gvv~~i------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
+-..+...+|.|+.+|+|..+ +++.||.|..|++|+.|-.+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 334566778888888888876 56699999999999999743
No 230
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=48.44 E-value=17 Score=37.60 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=25.2
Q ss_pred CCCCceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 98 GEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 98 ges~~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
|--++-+-=+.++++.||.|++||+|+.|=.
T Consensus 440 GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 440 GAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred CCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 3445556666899999999999999999864
No 231
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.08 E-value=19 Score=33.95 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecC
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+.-.+|++++|+.|+.||+|++++.+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 44458999999999999999999864
No 232
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=47.92 E-value=17 Score=37.02 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.7
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCc
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
++-+.=+.++++.||.|++||+|++|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 344555689999999999999999887554
No 233
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.86 E-value=19 Score=34.79 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=21.9
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.-.+|++++||.|++||+|++++.+
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEEeC
Confidence 3459999999999999999999863
No 234
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.73 E-value=19 Score=34.81 Aligned_cols=24 Identities=29% Similarity=0.572 Sum_probs=21.5
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-.+|++++|+.|++||+|++++.+
T Consensus 86 ~v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 86 TIEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 358999999999999999999864
No 235
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=47.49 E-value=60 Score=32.45 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=38.3
Q ss_pred EccCCCEEecCCeEEEEecC-ceeeEEecC--CCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQSD-KATIEITSR--YKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtd-K~~~eI~Ap--~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+++||.|..||+|.+|.-. -....|-.| ..|+|+.+ +.+|+ -++.+.++.++.+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~ 111 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFD 111 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeC
Confidence 46899999999999988633 345555444 48988664 34454 5666788888753
No 236
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=47.33 E-value=31 Score=34.78 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=33.3
Q ss_pred EecCceeeEEecCCCcEEEEE-------------------------------eeCCCCeeecCceEEEEecC
Q 021956 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 126 IEtdK~~~eI~Ap~~Gvv~~i-------------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
+-..+...+|.|+.+|+|..+ +.+.||.|..|++|+.|-..
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 445667788999999999876 45589999999999999743
No 237
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.14 E-value=20 Score=34.52 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-++|++++|+.|++||+|++++.+
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 458999999999999999999864
No 238
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=47.06 E-value=31 Score=35.22 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=31.8
Q ss_pred cCceeeEEecCCCcEEEEE-------------------------------eeCCCCeeecCceEEEEecC
Q 021956 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 128 tdK~~~eI~Ap~~Gvv~~i-------------------------------~v~~Gd~V~vG~~La~i~~~ 166 (305)
..+-..+|.|+.+|+|..+ +++.||.|..|++|+.|-.+
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 4566788888888888776 55699999999999999843
No 239
>PRK04350 thymidine phosphorylase; Provisional
Probab=46.79 E-value=19 Score=37.25 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCCCceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 98 GEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 98 ges~~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
|--++-+.=+.++++.||.|++||+|+.|=.
T Consensus 432 Gap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 432 GAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred CCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 3445666667899999999999999999864
No 240
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.78 E-value=20 Score=34.10 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEccCCCEEecCCeEEEEecC
Q 021956 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 106 I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
-.+|++++|+.|+.||+|++++..
T Consensus 59 ~~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 59 ECVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 359999999999999999999864
No 241
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.40 E-value=21 Score=34.25 Aligned_cols=26 Identities=4% Similarity=0.116 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecC
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
..-.+|++++|+.|+.||+|++++..
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEEC
Confidence 34569999999999999999999863
No 242
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=46.32 E-value=21 Score=34.77 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.8
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.-++|++++|+.|++||+|++++..
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G~ 102 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTGP 102 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEEC
Confidence 3457999999999999999999863
No 243
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.13 E-value=19 Score=37.35 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCCCceeEEEEEEccCCCEEecCCeEEEEec
Q 021956 98 GEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 98 ges~~eG~I~~w~v~eGD~V~~Gd~L~eIEt 128 (305)
|--++-+.=+.+|++.||.|++||+|+.|=.
T Consensus 441 GA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 441 GAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred CCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 4445556667899999999999999999864
No 244
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=46.07 E-value=62 Score=33.97 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=37.5
Q ss_pred ccCCCEEecCCeEEEEecCc-ee-eEEecCCCcEEEEEeeCCCCeeecCceEEEEecCCC
Q 021956 111 VKEGDEIEEFQPLCAVQSDK-AT-IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (305)
Q Consensus 111 v~eGD~V~~Gd~L~eIEtdK-~~-~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~~ 168 (305)
+++||.|..||+|..|.-.- .. .-+..+..|.+..+.+.+|+ -++.++|+.++.+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCCC
Confidence 47999999999999885333 21 22344445555555555654 466789999976543
No 245
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.54 E-value=22 Score=33.98 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=21.9
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
--.+|++++|+.|+.||+|++++.+
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEec
Confidence 3458999999999999999999864
No 246
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=45.34 E-value=51 Score=32.23 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=28.7
Q ss_pred EEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 123 LCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 123 L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
++.|+-+.....+.+. +.+++|++||.|+.||.|+.+...+
T Consensus 253 ~ViI~H~~g~~S~Yah----l~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 253 LIIIKHNDDYLSAYAH----NDTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred EEEEEeCCceEEEeeC----CCccccCCcCEECCCCeEEeEcCCC
Confidence 4455554444555554 3457899999999999999987543
No 247
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=45.21 E-value=46 Score=35.20 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=39.7
Q ss_pred EccCCCEEecCCeEEEEe-cCceeeEEe--cCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 110 FVKEGDEIEEFQPLCAVQ-SDKATIEIT--SRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIE-tdK~~~eI~--Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+++||.|..||++.+|+ +.-...-|- ....|+|+.+ +.+|+ .++.++|+.++..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~ 180 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQ 180 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeC
Confidence 578899999999999874 443444443 4457999766 34454 6778999999853
No 248
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=45.07 E-value=26 Score=30.63 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=25.3
Q ss_pred EEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 116 EIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 116 ~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.+++|+-|+.++. .|...-+.+.+|++|..|+.||.+.+.
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~rV~~gd~lA~v~T~ 114 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGDRVRKGDRLAYVTTR 114 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSEEE-TT-EEEEEE-T
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCcEeccCcEEEEEEec
Confidence 4556677777654 355557888999999999999999874
No 249
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=44.53 E-value=30 Score=42.54 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=17.0
Q ss_pred EEEccCCCEEecCCeEEEE
Q 021956 108 KWFVKEGDEIEEFQPLCAV 126 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eI 126 (305)
-+.|++||.|..||+|+.+
T Consensus 2525 ~l~v~~g~~v~~Gdilaki 2543 (2836)
T PRK14844 2525 VLNVQDGQKVHAGDVITRT 2543 (2836)
T ss_pred eEeeccCceecccceeecc
Confidence 3579999999999999987
No 250
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=44.42 E-value=24 Score=33.38 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEecC
Q 021956 107 LKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 107 ~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
++|++++|+.|+.||+|++++-.
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEEc
Confidence 37999999999999999999863
No 251
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=44.16 E-value=36 Score=34.64 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=31.6
Q ss_pred ecCceeeEEecCCCcEEEEE-------------------------------eeCCCCeeecCceEEEEec
Q 021956 127 QSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 127 EtdK~~~eI~Ap~~Gvv~~i-------------------------------~v~~Gd~V~vG~~La~i~~ 165 (305)
-.-+...+|.|+.+|+|..+ +++.||.|+.|++|+.|-.
T Consensus 330 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 330 PQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred CCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 34556778888888888877 4568999999999999983
No 252
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=44.09 E-value=21 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEccCCCEEecCCeEEEEecC
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+++|++||.|++||.|+++-..
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred ccccCCcCEECCCCeEEeEcCC
Confidence 5679999999999999988653
No 253
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.93 E-value=24 Score=33.74 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=21.9
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.-.+|++++|+.|+.||+|++++..
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 3458999999999999999999864
No 254
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=42.91 E-value=28 Score=34.59 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.7
Q ss_pred ceeEEEEE-------EccCCCEEecCCeEEE
Q 021956 102 AECELLKW-------FVKEGDEIEEFQPLCA 125 (305)
Q Consensus 102 ~eG~I~~w-------~v~eGD~V~~Gd~L~e 125 (305)
.+|+|.++ .|++||.|++||+|+.
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 47788765 5788999999999994
No 255
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=42.11 E-value=29 Score=40.18 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.6
Q ss_pred EEEccCCCEEecCCeEEEEec--------CceeeEEecCCCcEEE
Q 021956 108 KWFVKEGDEIEEFQPLCAVQS--------DKATIEITSRYKGKVA 144 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEt--------dK~~~eI~Ap~~Gvv~ 144 (305)
.++|++||.|++||+|+|+.. +|+...|.+..+|.|.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 578999999999999999985 3455778888888753
No 256
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.47 E-value=48 Score=28.85 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.5
Q ss_pred ecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 136 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 136 ~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
.-|..|.+....+..|.++..|++++.+.+-
T Consensus 95 ~iPvEGYvVtpIaDvG~RvrkGd~~AAvttR 125 (161)
T COG4072 95 LIPVEGYVVTPIADVGNRVRKGDPFAAVTTR 125 (161)
T ss_pred EEecCcEEEEEeecccchhcCCCceeEEEec
Confidence 3478899999999999999999999998764
No 257
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=38.76 E-value=33 Score=31.83 Aligned_cols=73 Identities=18% Similarity=0.052 Sum_probs=53.2
Q ss_pred EeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecC-----cee----------eEEecCCCcEEEEEeeCCCCeeec
Q 021956 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD-----KAT----------IEITSRYKGKVAQLLHAPGNIVKV 156 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtd-----K~~----------~eI~Ap~~Gvv~~i~v~~Gd~V~v 156 (305)
+....+||+++---+.+-.|..||....|++|++|-.- |.. .-......|...+++ ++..|..
T Consensus 79 l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL--~~G~V~~ 156 (223)
T PRK11536 79 FVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI--APGKVSA 156 (223)
T ss_pred cCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE--CCcEEcC
Confidence 55567899887655778889999999999999888542 110 112345668775554 7789999
Q ss_pred CceEEEEecC
Q 021956 157 GETLLKLVVG 166 (305)
Q Consensus 157 G~~La~i~~~ 166 (305)
||.|-.++..
T Consensus 157 GD~v~l~~r~ 166 (223)
T PRK11536 157 DAPLELVSRV 166 (223)
T ss_pred CCEEEEEeCC
Confidence 9999999863
No 258
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=34.83 E-value=38 Score=33.26 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=21.6
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+++| |++++|+.|..|++|++|+..
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 4554 899999999999999999963
No 259
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=34.55 E-value=87 Score=35.34 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=46.1
Q ss_pred EeecCCCCCCceeEEEEEE----ccCCCEEecCCeEEEEe-cCceeeEE--ecCCCcEEEEEeeCCCCeeecCceEEEEe
Q 021956 92 VPLAQTGEGIAECELLKWF----VKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~----v~eGD~V~~Gd~L~eIE-tdK~~~eI--~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~ 164 (305)
|.+|.|.... +|+ +++||+|..||+|.+|. +.=...-| +....|+|+.| +.+|+ -++.++++.++
T Consensus 107 ~~~~~l~~~~------~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRDK------KWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCCC------eeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 4567665532 443 68899999999999885 33334444 44457999776 34555 56778999998
Q ss_pred cC
Q 021956 165 VG 166 (305)
Q Consensus 165 ~~ 166 (305)
..
T Consensus 179 ~~ 180 (1017)
T PRK14698 179 TP 180 (1017)
T ss_pred cC
Confidence 63
No 260
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=34.15 E-value=16 Score=31.00 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.7
Q ss_pred ChHHHHHHHHhCCCccccc
Q 021956 205 TPTVRNLAKLYGINLYDVD 223 (305)
Q Consensus 205 sPaaRklA~e~gIDLs~V~ 223 (305)
-|++|.||.++||+++.|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 4999999999999998664
No 261
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=34.05 E-value=44 Score=28.08 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=26.4
Q ss_pred ceeEEEEEEccCCCEEecCCeEEEEecCcee---eEEecCCCcEEEEEeeCCCCeeecCceEE
Q 021956 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKAT---IEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (305)
Q Consensus 102 ~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~---~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La 161 (305)
..|+|.++..++ +|.-.+.|++..-. ..|++- .++.|++|+.|+.|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G-----peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG-----PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS-----S-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC-----CeEEEcCCCEEecCCccc
Confidence 468888887654 45555556654321 123321 156788899988888764
No 262
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=33.50 E-value=37 Score=34.46 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=10.0
Q ss_pred EeeCCCCeeecCceEEEEec
Q 021956 146 LLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 146 i~v~~Gd~V~vG~~La~i~~ 165 (305)
++.+.||.|++|++|+.|-.
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 34445555555555555543
No 263
>PRK02259 aspartoacylase; Provisional
Probab=32.83 E-value=28 Score=33.04 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=37.9
Q ss_pred EEEccCC--CEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEE
Q 021956 108 KWFVKEG--DEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (305)
Q Consensus 108 ~w~v~eG--D~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La 161 (305)
.-.++.+ +.|++||+|+.. .+..++.+.++.+++. +.+.+...+..|..++
T Consensus 229 hp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 229 HPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred chhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 4456667 569999999988 7788888999998877 5566666666666554
No 264
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=32.24 E-value=60 Score=40.24 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=17.1
Q ss_pred EEccCCCEEecCCeEEEEe
Q 021956 109 WFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 109 w~v~eGD~V~~Gd~L~eIE 127 (305)
+.|++||.|..||+|+.+-
T Consensus 2616 l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred EEecCCCEecccceEeecc
Confidence 6799999999999999874
No 265
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=31.57 E-value=1.2e+02 Score=32.30 Aligned_cols=56 Identities=27% Similarity=0.298 Sum_probs=39.2
Q ss_pred EccCCCEEecCCeEEEEecC-ceeeE--EecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 110 FVKEGDEIEEFQPLCAVQSD-KATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIEtd-K~~~e--I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.+++||.|..||+|.+|+-. -...- ++....|++..| +.+| ..++.++|+.++..+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G-~ytv~~~i~~~~~~~ 181 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEG-DYTVDDTIAVLEDED 181 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCC-CceeeeEEEEEEccC
Confidence 57899999999999998654 23333 344457888665 3444 467788999998643
No 266
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=31.54 E-value=63 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCcEEEEEeeCC-CCeeecCceEEEEecCC
Q 021956 139 YKGKVAQLLHAP-GNIVKVGETLLKLVVGD 167 (305)
Q Consensus 139 ~~Gvv~~i~v~~-Gd~V~vG~~La~i~~~~ 167 (305)
.-|.|..+.... |+.|..|++|+.|+...
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 357787876654 99999999999999754
No 267
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=31.02 E-value=64 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred cEEEEEeeCCCCeeecCceEEEEec
Q 021956 141 GKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 141 Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
|.-.+.++++|+.|..|++|+.++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 4445678899999999999999975
No 268
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.66 E-value=60 Score=31.34 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=21.7
Q ss_pred eEEEEEEc--cCCCEEecCCeEEEEecC
Q 021956 104 CELLKWFV--KEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 104 G~I~~w~v--~eGD~V~~Gd~L~eIEtd 129 (305)
....+|++ ++|+.|++||+|++++..
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~G~ 97 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEIIGS 97 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEEEC
Confidence 34457888 999999999999999864
No 269
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=30.63 E-value=1.6e+02 Score=27.01 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred eEEEeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecC
Q 021956 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVG 157 (305)
Q Consensus 89 ~~~i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG 157 (305)
...+.+...+++... .....+|+.+++||.|. ||+++ ..|+.|-+..|++|+.+
T Consensus 51 ~v~viVS~~~~S~~~----~vel~~gE~l~vGDei~-vd~e~----------veITSIE~~~gkRV~~A 104 (201)
T COG1326 51 RVRVIVSRHEESFTK----EVELDPGETLKVGDEIE-VDGEE----------VEITSIELGGGKRVKSA 104 (201)
T ss_pred eEEEEEecCCcccce----eEecCCCCeEecCCEEE-EcCCE----------EEEEEEeeCCCcccccc
Confidence 566777787777554 45679999999999764 56654 45667777777777643
No 270
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=30.13 E-value=55 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCEEecCCeEEEEecC
Q 021956 104 CELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
+.+..|++++|+.|..||+|++|+..
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~G~ 74 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIEGP 74 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEEEc
Confidence 56778999999999999999999864
No 271
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=29.38 E-value=42 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=17.6
Q ss_pred eEEEEEEccCCCEEecCCeEEE
Q 021956 104 CELLKWFVKEGDEIEEFQPLCA 125 (305)
Q Consensus 104 G~I~~w~v~eGD~V~~Gd~L~e 125 (305)
+++.+|.+++|+.|+.||.|++
T Consensus 181 ~~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 181 DKIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred CCccccccCCCCEEEeeeEEeC
Confidence 3334899999999999998863
No 272
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.33 E-value=70 Score=29.51 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=52.0
Q ss_pred EeecCCCCCCceeEEEEEEccCCCEEecCCeEEEEecCce-------eeE--------EecCCCcEEEEEeeCCCCeeec
Q 021956 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA-------TIE--------ITSRYKGKVAQLLHAPGNIVKV 156 (305)
Q Consensus 92 i~lP~lges~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~-------~~e--------I~Ap~~Gvv~~i~v~~Gd~V~v 156 (305)
+.-+.+||++.---|.+-.+..||.+.-|++|+||---.. .++ -.+...|...+++ ++..|..
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL--~~G~v~~ 153 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL--EEGKVRA 153 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc--ccceecC
Confidence 4456789998877788889999999999999999864210 011 2334457765554 6788999
Q ss_pred CceEEEEec
Q 021956 157 GETLLKLVV 165 (305)
Q Consensus 157 G~~La~i~~ 165 (305)
||.|-.+..
T Consensus 154 gD~l~l~~r 162 (210)
T COG2258 154 GDPLKLIPR 162 (210)
T ss_pred CCceEEecC
Confidence 999888764
No 273
>COG1678 Putative transcriptional regulator [Transcription]
Probab=28.66 E-value=31 Score=31.41 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=10.7
Q ss_pred ceEeeecccccc
Q 021956 291 QYWNCNGYSTWS 302 (305)
Q Consensus 291 ~~~~~~~~~~~~ 302 (305)
.+.+|.||+.|.
T Consensus 130 ~~l~~lGYagW~ 141 (194)
T COG1678 130 KALVALGYAGWA 141 (194)
T ss_pred ceEEEEEecccc
Confidence 389999999997
No 274
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=28.40 E-value=39 Score=34.47 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=27.9
Q ss_pred eeeEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 131 ~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
...-.-+++-|...++.|++||.|..||+|+.-..
T Consensus 29 ~~~ipl~qh~G~~~~~~V~~GD~V~~Gq~I~~~~~ 63 (448)
T PRK05352 29 TVALLGEDYVGLRPKMKVKEGDKVKKGQPLFEDKK 63 (448)
T ss_pred EEEEechhcCCCCCceEeCcCCEEcCCCEeEecCC
Confidence 33344567778888999999999999999997653
No 275
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=27.41 E-value=78 Score=39.34 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.1
Q ss_pred EeeCCCCeeecCceEEEEecC
Q 021956 146 LLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 146 i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+.|++|+.|..|++|+.+-.+
T Consensus 2616 l~v~~g~~v~~gdilak~p~~ 2636 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKA 2636 (2890)
T ss_pred EEecCCCEecccceEeecccc
Confidence 578899999999999998654
No 276
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=27.36 E-value=65 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.1
Q ss_pred EEEEEEccCCCEEecCCeEEEEecC
Q 021956 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 105 ~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
.+..|.+++|+.|..|++|++|+..
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G~ 95 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEGP 95 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEEc
Confidence 3568899999999999999999863
No 277
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=27.36 E-value=81 Score=36.57 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.8
Q ss_pred EEEccCCCEEecCCeEEEEe
Q 021956 108 KWFVKEGDEIEEFQPLCAVQ 127 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIE 127 (305)
.+|+..||.|.+||.|+.+=
T Consensus 951 ~~~~~~g~~v~~Gd~L~~l~ 970 (1331)
T PRK02597 951 VLHVRDGDLVQRGDNLALLV 970 (1331)
T ss_pred EEEecCCCEecCCCeEEEEE
Confidence 35788899999999999763
No 278
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=27.10 E-value=1.1e+02 Score=31.09 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=19.5
Q ss_pred EEecCceeeEEecCCCcEEEEEeeC
Q 021956 125 AVQSDKATIEITSRYKGKVAQLLHA 149 (305)
Q Consensus 125 eIEtdK~~~eI~Ap~~Gvv~~i~v~ 149 (305)
.+..-+-..+|.|..+|+|..+...
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~ 353 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDAR 353 (435)
T ss_pred hcccCceEEEEeccCceeEEeechH
Confidence 3455677889999999999887543
No 279
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=27.06 E-value=2.3e+02 Score=25.25 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=36.4
Q ss_pred eeEEEEEEccCCCEEe--------cCCe-EEEEecCceeeE---EecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 103 ECELLKWFVKEGDEIE--------EFQP-LCAVQSDKATIE---ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~--------~Gd~-L~eIEtdK~~~e---I~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+|+|.+....+|+... +++- ++.+|++...+- +-+...+.+ ...+++|+.++.|+.++.+.-+
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i-~~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRI-VCYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEE-EEecCCCCEEecCcEEEEEecC
Confidence 5777777777776333 2332 356666532211 211112222 2356789999999999998865
No 280
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=26.78 E-value=1.4e+02 Score=31.55 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.1
Q ss_pred EccCCCEEecCCeEEEEe-cCceeeEE--ecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 110 FVKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 110 ~v~eGD~V~~Gd~L~eIE-tdK~~~eI--~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
.+++||.|..||+|++|. +.-.+..| .....|+|..+ +.+|+ .++.++++.++..+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 378999999999999884 43333333 33468998766 34454 67788899888533
No 281
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=42 Score=30.45 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEccCCCEEecCCeEEEEec
Q 021956 108 KWFVKEGDEIEEFQPLCAVQS 128 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEt 128 (305)
+.+|++||.|++||+|..+.+
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G~ 235 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVGS 235 (277)
T ss_pred hhccCCCCEeccCCEEEEecC
Confidence 688999999999999998854
No 282
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=25.85 E-value=37 Score=34.61 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.4
Q ss_pred eEEecCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 133 ~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
.-.-+++-|.-.++.|++||.|..||+|+.-..
T Consensus 30 ~ipl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~ 62 (447)
T TIGR01936 30 AVDGRDFVGMRPKMKVRPGDKVKAGQPLFEDKK 62 (447)
T ss_pred EEechhcCCCCCceEeCcCCEEcCCCEeEecCC
Confidence 335567788888999999999999999998653
No 283
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.61 E-value=76 Score=20.59 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCccccccCCCCCceehHHHHHHHH
Q 021956 207 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (305)
Q Consensus 207 aaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~ 241 (305)
.++++.++..|..-.+ |..-++.++||.+|++
T Consensus 17 ti~~~~~~g~i~~~~~---g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 17 TVYRLIHEGELPAYRV---GRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHcCCCCeEEe---CCeEEEeHHHHHHHHh
Confidence 4556666554443222 4455699999999985
No 284
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=24.43 E-value=77 Score=30.46 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.8
Q ss_pred eeEEEEEEccCCCEEecCCeEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~Gd~L~eIEtd 129 (305)
..+| + .+++|+.|..|++|++|+..
T Consensus 52 ~~~i-~-~~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 52 PVKV-Y-ALPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred CeEE-E-EeCCCCEECCCCcEEEEEeC
Confidence 4555 3 58999999999999999974
No 285
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=89 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.1
Q ss_pred ChHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHh
Q 021956 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (305)
Q Consensus 205 sPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~ 242 (305)
.-+.+.-|++.|++...||=+| +-||++||+.+...
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~A 82 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQRA 82 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHHH
Confidence 4567888999999999999776 46999999988753
No 286
>PRK11637 AmiB activator; Provisional
Probab=23.64 E-value=1.4e+02 Score=29.88 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=35.5
Q ss_pred CceeEEEEEEccCCCEEecCCeEEEEecCceeeEEecCCCcEEEEEeeCCCCeeecCceEEEEecCC
Q 021956 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 101 ~~eG~I~~w~v~eGD~V~~Gd~L~eIEtdK~~~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~~ 167 (305)
..+|+|+....-. .-|-. +.|+-......+.+. +..+.|.+|+.|..|++|+.+...+
T Consensus 345 ~~~G~V~~~~~~~----~~G~~-vii~hg~g~~t~Y~~----~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 345 IADGRVLLADWLQ----GYGLV-VVVEHGKGDMSLYGY----NQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred cCCeEEEEeeccC----CcccE-EEEEeCCCcEEEccC----CCcCCCCCcCEECCCCeEEeecCCC
Confidence 4577776542211 12433 345554444555544 3456799999999999999986543
No 287
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=23.60 E-value=48 Score=30.99 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=25.1
Q ss_pred EEEccCCCEEecCCeEEEEecCceeeE
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDKATIE 134 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK~~~e 134 (305)
.|++..|..+++=|+.|.||.||...+
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 589999999999999999999998776
No 288
>PRK11637 AmiB activator; Provisional
Probab=21.89 E-value=43 Score=33.44 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEccCCCEEecCCeEEEEecCc
Q 021956 108 KWFVKEGDEIEEFQPLCAVQSDK 130 (305)
Q Consensus 108 ~w~v~eGD~V~~Gd~L~eIEtdK 130 (305)
.+.|++||.|..||+|+.+-+..
T Consensus 380 ~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 380 SALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred cCCCCCcCEECCCCeEEeecCCC
Confidence 45799999999999999987653
No 289
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=21.87 E-value=74 Score=26.21 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.0
Q ss_pred cChHHHHHHHHhCCCccccccCCCCCceehHHHHH
Q 021956 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238 (305)
Q Consensus 204 AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~ 238 (305)
..|.+.++++++|||++... . .++.+|+..
T Consensus 42 ~~~~a~~~l~~~Gid~~~~~----~-~l~~~~~~~ 71 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHHA----S-QLTSSDFKN 71 (140)
T ss_pred CCHHHHHHHHHcCcCcccee----c-cCCHHHHHh
Confidence 57999999999999987432 2 688777644
No 290
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=20.86 E-value=82 Score=31.76 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=23.6
Q ss_pred cCCCcEEEEEeeCCCCeeecCceEEEEec
Q 021956 137 SRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (305)
Q Consensus 137 Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~ 165 (305)
..+-|.-.++.|++||.|..||+|+....
T Consensus 36 ~~~~g~~~~~~V~~Gd~V~~Gq~i~~~~~ 64 (435)
T TIGR01945 36 SQHIGAPAEPIVKVGDKVLKGQKIAKADG 64 (435)
T ss_pred ccCCCCCCceeeCCCCEECCCCEeccCCC
Confidence 34556667899999999999999998743
No 291
>PRK13380 glycine cleavage system protein H; Provisional
Probab=20.63 E-value=1.1e+02 Score=26.28 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.3
Q ss_pred ecCCCcEEEEEeeC-CCCeeecCceEEEEecCC
Q 021956 136 TSRYKGKVAQLLHA-PGNIVKVGETLLKLVVGD 167 (305)
Q Consensus 136 ~Ap~~Gvv~~i~v~-~Gd~V~vG~~La~i~~~~ 167 (305)
-...-|.|..+.+. +|+.|+.|++++.|+...
T Consensus 39 aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K 71 (144)
T PRK13380 39 AQTMAGDVVFVRLKELGKKVEKGKPVATLESGK 71 (144)
T ss_pred HHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcc
Confidence 34566888888886 899999999999998754
No 292
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.55 E-value=1.1e+02 Score=20.79 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=22.4
Q ss_pred hHHHHHHHHhCCCccccccCCCCCceehHHHHHHHHhc
Q 021956 206 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243 (305)
Q Consensus 206 PaaRklA~e~gIDLs~V~GTG~~GRItkeDV~~~~~~~ 243 (305)
..+++++++.+|.-- +.|+.=++.++||++|++.+
T Consensus 16 ~tv~~~~~~g~i~~~---~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 16 STVYRWIRQGKIPPF---KIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHHHHHHcCCCCeE---EeCCEEEEeHHHHHHHHHhC
Confidence 446667666544222 24444559999999999754
No 293
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=20.54 E-value=4.1e+02 Score=23.88 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=38.3
Q ss_pred eeEEEEEEccCCCEEec--------C-CeEEEEecCce---e-eEEecCCCcEEEEEeeCCCCeeecCceEEEEecC
Q 021956 103 ECELLKWFVKEGDEIEE--------F-QPLCAVQSDKA---T-IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (305)
Q Consensus 103 eG~I~~w~v~eGD~V~~--------G-d~L~eIEtdK~---~-~eI~Ap~~Gvv~~i~v~~Gd~V~vG~~La~i~~~ 166 (305)
+|+|.++...+|+.... + ..++.+|+++. . ..|-+-..+.|. ..+++|+.++.|+.++.+.-.
T Consensus 99 ~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 99 SGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred cCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEeEEecC
Confidence 68888888888875554 2 23345666421 1 112222233332 256789999999999998864
No 294
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=20.13 E-value=90 Score=26.42 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=22.3
Q ss_pred cChHHHHHHHHhCCCccccccCCCCCceehHHHH
Q 021956 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVL 237 (305)
Q Consensus 204 AsPaaRklA~e~gIDLs~V~GTG~~GRItkeDV~ 237 (305)
+.|.+.++++++|||++.- +.-.++.+|+.
T Consensus 45 ~~~~a~~~l~~~Gid~~~h----~s~~lt~~~~~ 74 (144)
T PRK11391 45 ADATAADVAANHGVSLEGH----AGRKLTAEMAR 74 (144)
T ss_pred CCHHHHHHHHHcCCCcCCC----ccCcCCHHHHh
Confidence 5799999999999998642 22347777664
Done!