BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021957
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic
OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1
Length = 298
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/300 (79%), Positives = 259/300 (86%), Gaps = 6/300 (2%)
Query: 1 MAQTSASTSSASLYS----LVVSPNPSSNIDAHKLSHTFRPIGSRKPRKLVSIQKNLRNS 56
MA STS++SL + SPN SS D+ KLS F P+ SRK KLVS +KN +NS
Sbjct: 1 MAHACVSTSASSLRFTAGFVSASPNGSS-FDSPKLSLPFEPLRSRKTNKLVSDRKNWKNS 59
Query: 57 SVRAVYSGKFWAPDRSYRQGIWSIRDDLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQ 116
+ +AVYSG W P+ QG+WSIRDDLQ+PSSPYFP +AQG P PMVQERFQS+ISQ
Sbjct: 60 TPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQGPP-PMVQERFQSIISQ 118
Query: 117 LFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH 176
LFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DP KDIV+YVNSPGGSVTAGMAIFDTM+H
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178
Query: 177 IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 236
IRPDVSTVCVGLAASMGAFLLSAG KGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238
Query: 237 LHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQPLPAA 296
LHHKANLNGYLAYHTGQSLEKINQDTDRD+FMS KEAK+YGLIDGVIMNPLKALQPL AA
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAAA 298
>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1
Length = 204
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/176 (72%), Positives = 147/176 (83%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAG
Sbjct: 14 ERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAG 73
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M IFDTMKHIRPDV T+C GLAASMGAFLLSAGAKGKR SLP+SRIMIHQPLGGAQG T
Sbjct: 74 MGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQAT 133
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L+HK LN YLA HTGQ +E+I +DT+RD+FMSP EAKDYGLID VI
Sbjct: 134 DIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVI 189
>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3
SV=1
Length = 204
Score = 264 bits (674), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 126/176 (71%), Positives = 146/176 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAG
Sbjct: 14 ERAFDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAG 73
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M IFDTMKHIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG T
Sbjct: 74 MGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQAT 133
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L+HK LN YLA HTGQ +E+I +DT+RD+FMSP EA+DYGLID VI
Sbjct: 134 DIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVI 189
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 148/176 (84%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AG
Sbjct: 13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+HI+PDVST+C+GLAASMGAFLL+ GAKGKR +LP++RIMIHQPLGGAQG T
Sbjct: 73 MAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPAT 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L K +LN LAYHTGQ LE+I +DTDRD FM+P++AK+YGLID VI
Sbjct: 133 DIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 147/176 (83%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AG
Sbjct: 13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+HI+PDVST+C+GLAASMGAFLL+ G KGKR +LP++RIMIHQPLGGAQG T
Sbjct: 73 MAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPAT 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L K +LN LAYHTGQ LE+I +DTDRD FM+P++AK+YGLID VI
Sbjct: 133 DIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188
>sp|Q5N1P6|CLPP3_SYNP6 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP3 PE=3 SV=1
Length = 240
Score = 250 bits (639), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 146/183 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G VDD +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAG
Sbjct: 49 ERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAG 108
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ + PDV+T+C GLAASMGAFLLS GA+GKR +LP++RIMIHQPLGGAQG
Sbjct: 109 MAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAV 168
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+IQA E+L+HK+ LN LA HTGQ LEKI DTDRD+FMSP+EAK YGLID V+ P
Sbjct: 169 DIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRPT 228
Query: 288 KAL 290
A+
Sbjct: 229 MAI 231
>sp|O34125|CLPP2_SYNE7 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1
Length = 240
Score = 250 bits (639), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 146/183 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G VDD +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAG
Sbjct: 49 ERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAG 108
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ + PDV+T+C GLAASMGAFLLS GA+GKR +LP++RIMIHQPLGGAQG
Sbjct: 109 MAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAV 168
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+IQA E+L+HK+ LN LA HTGQ LEKI DTDRD+FMSP+EAK YGLID V+ P
Sbjct: 169 DIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRPT 228
Query: 288 KAL 290
A+
Sbjct: 229 MAI 231
>sp|P54416|CLPP1_SYNY3 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP1 PE=3 SV=1
Length = 198
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 145/176 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
+R + S+L + RI+ G V D+ AN++VAQLL+L+A DP KDI +Y+NSPGGSV+AG
Sbjct: 13 DRAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+ IFDTM IRPDV T+C+GLAASMGAFLLSAGAKGKR SLPNSRIMIHQPLGGAQG T
Sbjct: 73 LGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQAT 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L+ KA LN +LA HTG+SLE+I DT+RD+FMS +E+K+YGLID VI
Sbjct: 133 DIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVI 188
>sp|Q7UZK7|CLPP3_PROMP ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP3 PE=3 SV=1
Length = 215
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 143/178 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G ++D +++ +VAQLL+L+A DPHKDI IY+NSPGGSVTAG
Sbjct: 36 ERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIYINSPGGSVTAG 95
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM+ I PDV T+C G+AASMGAFLLS GAKGKR +LPNSRIMIHQPLGGAQG
Sbjct: 96 LAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAV 155
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285
+I+IQA E+L K LN LA HT QSLEKIN+DT+RDYF+SP+EA +YGLID VI N
Sbjct: 156 EIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKN 213
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/189 (62%), Positives = 151/189 (79%), Gaps = 6/189 (3%)
Query: 101 PANPMV------QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIV 154
P PMV ER + S+L + RII G A+DD++AN+IVAQLL+L++ DP KDI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDIN 61
Query: 155 IYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIM 214
Y+NSPGG VTAGMA++DTM++I+PDV+TVC+G AASMGA LL+AGAKGKR+SLPNSRIM
Sbjct: 62 FYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIM 121
Query: 215 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAK 274
IHQPLGGAQG +DI IQANE+L K L+G L+ HTGQ+ +KI++DTDRD+FMS +AK
Sbjct: 122 IHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAK 181
Query: 275 DYGLIDGVI 283
+YGL+D V+
Sbjct: 182 EYGLVDHVV 190
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 146/181 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G +DD +AN+++AQLL+L+A DP KDI +Y+NSPGGS+TAG
Sbjct: 16 ERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAG 75
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DT+++IRPDVST+CVGLAASMGAFLL+AG KGKRY+LPN+ IMIHQP GG QG T
Sbjct: 76 MAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQAT 135
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+I A +++ K +LN LA TGQ LE+I +DTDRDYFM+ +EAK+YG+ID VI +P
Sbjct: 136 DIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVISHPK 195
Query: 288 K 288
K
Sbjct: 196 K 196
>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1
Length = 232
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/210 (60%), Positives = 151/210 (71%), Gaps = 11/210 (5%)
Query: 95 HAQGPPPANPMV------QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAID 148
H G PMV ER + S+L + RII G +DD +AN IVAQLL+LDA D
Sbjct: 22 HLNGIGNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAED 81
Query: 149 PHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSL 208
KDI +Y+NSPGGSV AGMAI+DT++ IRPDV T+C GLAASMGAFLL+AG KGKR SL
Sbjct: 82 SEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSL 141
Query: 209 PNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268
P+SRIMIHQPLGGAQG DI+IQA E+L+ KA LN LA HTGQ LE+I DTDRD+FM
Sbjct: 142 PDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFM 201
Query: 269 SPKEAKDYGLIDGVIMNPLKALQPLPAAAD 298
S +EAK+YGLID VI + Q LP A +
Sbjct: 202 SAEEAKNYGLIDQVI-----SRQNLPTAGE 226
>sp|Q317Y6|CLPP4_PROM9 ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1
Length = 219
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/176 (65%), Positives = 140/176 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G ++D +++ +VAQLL+L+A DP KDI IY+NSPGGSVTAG
Sbjct: 42 ERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAG 101
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I PDV T+C G+AASMGAFLLS GAKGKR +LPNSRIMIHQPLGGAQG
Sbjct: 102 MAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAV 161
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
+I+IQA E+L K LN LA HTGQ LEKIN+DT+RDYF+SP EA +YGLID VI
Sbjct: 162 EIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVI 217
>sp|Q3M726|CLPP3_ANAVT ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3
SV=2
Length = 214
Score = 244 bits (622), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 128/210 (60%), Positives = 151/210 (71%), Gaps = 11/210 (5%)
Query: 95 HAQGPPPANPMV------QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAID 148
H G PMV ER + S+L + RII G +DD +AN IVAQLL+LDA D
Sbjct: 4 HLNGIGNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAED 63
Query: 149 PHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSL 208
KDI +Y+NSPGGSV AGMAI+DT++ IRPDV T+C GLAASMGAFLL+AG KGKR SL
Sbjct: 64 SEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSL 123
Query: 209 PNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268
P+SRIMIHQPLGGAQG DI+IQA E+L+ KA LN LA HTGQ LE+I DTDRD+FM
Sbjct: 124 PDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFM 183
Query: 269 SPKEAKDYGLIDGVIMNPLKALQPLPAAAD 298
S +EAK+YGLID VI + Q LP A +
Sbjct: 184 SAEEAKNYGLIDQVI-----SRQNLPTAGE 208
>sp|Q3ANI8|CLPP1_SYNSC ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain CC9605) GN=clpP1 PE=3 SV=2
Length = 207
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/197 (60%), Positives = 150/197 (76%), Gaps = 7/197 (3%)
Query: 92 FPVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDA 146
PV A GP P +V++ R + S+L + RII G VDD +A+ +VAQ+L+L+A
Sbjct: 1 MPVSAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEA 58
Query: 147 IDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRY 206
DP KDI IY+NSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR
Sbjct: 59 EDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRL 118
Query: 207 SLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266
+LPN+RIMIHQPLGGAQG DI+IQA E+L+ K LNG +A HTGQ L+KI++DTDRDY
Sbjct: 119 ALPNARIMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDY 178
Query: 267 FMSPKEAKDYGLIDGVI 283
F+SP EA +YGLID V+
Sbjct: 179 FLSPAEAVEYGLIDRVV 195
>sp|Q3B0U1|CLPP2_SYNS9 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain CC9902) GN=clpP2 PE=3 SV=1
Length = 207
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/197 (61%), Positives = 149/197 (75%), Gaps = 7/197 (3%)
Query: 92 FPVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDA 146
P+ A GP P +V++ R + S+L + RII G VDD +A+ +VAQ+L+L+A
Sbjct: 1 MPISAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEA 58
Query: 147 IDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRY 206
DP KDI IYVNSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR
Sbjct: 59 EDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRL 118
Query: 207 SLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266
+LPN+RIMIHQPLGGAQG DI+IQA E+L K LNG LA HTGQ L+KI++DTDRDY
Sbjct: 119 ALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDY 178
Query: 267 FMSPKEAKDYGLIDGVI 283
F+SP EA +YGLID V+
Sbjct: 179 FLSPAEAVEYGLIDRVV 195
>sp|Q8DLI2|CLPP1_THEEB ATP-dependent Clp protease proteolytic subunit 1
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1
PE=3 SV=1
Length = 229
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/182 (64%), Positives = 141/182 (77%), Gaps = 6/182 (3%)
Query: 108 ERFQSVISQLFQHRIIRCGGA------VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG 161
ER + S+L + RII GG +DD +A+ IVAQLL+LDA DP KDI +Y+NSPG
Sbjct: 40 ERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPG 99
Query: 162 GSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGG 221
GSVTAGMAI+DTMKHIRPDV T+C GLAASMGAFLLS G GKR +LPN+RIMIHQPLGG
Sbjct: 100 GSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGG 159
Query: 222 AQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDG 281
AQG DI+IQA E+L+HK LN L+ HTGQ +E+I DT+RD+FMS +EAK YGLID
Sbjct: 160 AQGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQ 219
Query: 282 VI 283
V+
Sbjct: 220 VV 221
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 145/183 (79%), Gaps = 1/183 (0%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER +IS+L + RI+ G +DDD+AN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAG
Sbjct: 17 ERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAG 76
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM++++ VST+CVG AASMGA LL AGAKGKRY+LP+SRIMIHQPLGG +G T
Sbjct: 77 LAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQAT 136
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+IQA E+L KA LN + HTGQS+E++ +DTDRDYFM EAK YG+ID I NP
Sbjct: 137 DIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDE-IQNPR 195
Query: 288 KAL 290
K +
Sbjct: 196 KVV 198
>sp|Q49VZ2|CLPP_STAS1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=clpP PE=3 SV=1
Length = 194
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 143/177 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G +DD++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG T
Sbjct: 75 FAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284
+I+I AN +L +A LN LA TGQS+EKI QDTDRD F+S +EAKDYGL+D V++
Sbjct: 135 EIEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEAKDYGLVDQVMV 191
>sp|Q7M7M3|CLPP_WOLSU ATP-dependent Clp protease proteolytic subunit OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=clpP PE=3 SV=1
Length = 195
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 144/181 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G ++D +A+ IV+Q+L+L+A DP KDI +Y+NSPGG +T+G
Sbjct: 15 ERSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLYINSPGGVITSG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M+I+DTM +++PD+ T+C+G AASMGAFLLS G KGKR+SLPNSRIMIHQPLGGAQG T
Sbjct: 75 MSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+IQA E+L K+ LNG LA +TGQ LEKI +DTDRD+FMS +E+K+YGLID V+
Sbjct: 135 DIEIQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQESKEYGLIDNVLEKSF 194
Query: 288 K 288
K
Sbjct: 195 K 195
>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1
Length = 226
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 140/179 (78%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G VDD +A+ IVAQLL+LDA DP KDI +Y+NSPGGSV AG
Sbjct: 35 ERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAG 94
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM+ IRPDV T+C GLAASMGAFLLS G KGKR +LP+SRIMIHQPLGGAQG
Sbjct: 95 LAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAV 154
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNP 286
+I+IQA E+L+ K LN L HTGQ +EK+ +DT+RD+FMS +EAK+YGLID VI P
Sbjct: 155 EIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRP 213
>sp|A7HFV9|CLPP_ANADF ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=clpP PE=3 SV=1
Length = 204
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 147/184 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G +DDD+AN+++AQLL+L++ DP KDI +Y+NSPGGSVT+G
Sbjct: 17 ERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSG 76
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM++++P VST+C+G AASMGAFLL+ GA GKR+++PN+RIMIHQP+GG QG T
Sbjct: 77 LAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQAT 136
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DIDIQA E+L KA LN LA HT Q LE+I +DTDRDYFM EAK+YGLID VI++
Sbjct: 137 DIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVIVHKP 196
Query: 288 KALQ 291
KA +
Sbjct: 197 KATE 200
>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP1 PE=3 SV=1
Length = 197
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 137/176 (77%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G V D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G
Sbjct: 13 ERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+ IFDTM HIRPDVSTVCVGLAASMGAFLL+AGAKGKR SL +SRIMIHQPLGGAQG
Sbjct: 73 LGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAK 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQANE+L+ K NLN LA TGQ L +I DTDRD+FMS EA +YGLID VI
Sbjct: 133 DIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188
>sp|P54415|CLPP1_SYNE7 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1
Length = 197
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 137/176 (77%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G V D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G
Sbjct: 13 ERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+ IFDTM HIRPDVSTVCVGLAASMGAFLL+AGAKGKR SL +SRIMIHQPLGGAQG
Sbjct: 73 LGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAK 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQANE+L+ K NLN LA TGQ L +I DTDRD+FMS EA +YGLID VI
Sbjct: 133 DIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188
>sp|A2SFB5|CLPP_METPP ATP-dependent Clp protease proteolytic subunit OS=Methylibium
petroleiphilum (strain PM1) GN=clpP PE=3 SV=1
Length = 202
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/176 (63%), Positives = 143/176 (81%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R+I G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 23 ERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 82
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
++IFDTM+ I+PDVST+C+G+AASMGAFLL+AGAKGKR++LPNSR+MIHQP GGAQG T
Sbjct: 83 LSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMIHQPSGGAQGQAT 142
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L + +LNG LA TGQ LEKI D++RDYFMS +EA YGLID VI
Sbjct: 143 DIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMSAEEATGYGLIDKVI 198
>sp|B1Y6H3|CLPP_LEPCP ATP-dependent Clp protease proteolytic subunit OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpP
PE=3 SV=1
Length = 202
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 141/176 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R+I G V+D AN++VAQLL+L++ +P KDI Y+NSPGGSV+AG
Sbjct: 23 ERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENPDKDISFYINSPGGSVSAG 82
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M+I+DTM+ I+P VST+C+GLAASMGAFLL+AGAKGKR+SLPNS+IMIHQPLGGAQG T
Sbjct: 83 MSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQAT 142
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+I A E+L + LN LA TGQSLEKI DT+RDYFMS +EA+ YGLID VI
Sbjct: 143 DIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEAQTYGLIDQVI 198
>sp|B5EI27|CLPP_GEOBB ATP-dependent Clp protease proteolytic subunit OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=clpP PE=3 SV=1
Length = 199
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 140/176 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII GG +DD++AN+++AQLL+L+A DP KDI +Y+NSPGG VTAG
Sbjct: 14 ERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAG 73
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM++I+ VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG T
Sbjct: 74 MAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQAT 133
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI I A E+L K LN LA HTGQS+EK+ DT+RDYFMS +EAK+YG+ID ++
Sbjct: 134 DIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189
>sp|Q7UA36|CLPP1_SYNPX ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain WH8102) GN=clpP1 PE=3 SV=1
Length = 224
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 119/197 (60%), Positives = 147/197 (74%), Gaps = 7/197 (3%)
Query: 92 FPVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDA 146
P+ A GP P +V++ R + S+L + RII G VDD +A+ +VAQ+L+L+A
Sbjct: 18 MPISAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEA 75
Query: 147 IDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRY 206
DP KDI IY+NSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR
Sbjct: 76 EDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRL 135
Query: 207 SLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266
+LPN+RIMIHQPLGGAQG DI+IQA E+L K LNG +A HTGQ L+KI +DTDRDY
Sbjct: 136 ALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDY 195
Query: 267 FMSPKEAKDYGLIDGVI 283
F+SP EA YGLID V+
Sbjct: 196 FLSPAEAVQYGLIDRVV 212
>sp|C6E2T0|CLPP_GEOSM ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain M21) GN=clpP PE=3 SV=1
Length = 199
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 140/176 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII GG +DD++AN+++AQLL+L+A DP KDI +Y+NSPGG VTAG
Sbjct: 14 ERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAG 73
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM++I+ VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG T
Sbjct: 74 MAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQAT 133
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI I A E+L K LN LA HTGQS+EK+ DT+RDYFMS +EAK+YG+ID ++
Sbjct: 134 DIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189
>sp|Q0BEF6|CLPP_BURCM ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1
Length = 217
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 146/177 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R++ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 38 ERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 97
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I+PDVST+C+GLAASMGAFLL++GAKGKR++LPNSR+MIHQPLGGA+G +
Sbjct: 98 MAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQAS 157
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284
DI+IQA E+L+ K LN LA HTGQ +E+I +DTDRD FMS ++AK YGLID V++
Sbjct: 158 DIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLL 214
>sp|A0K847|CLPP_BURCH ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
cenocepacia (strain HI2424) GN=clpP PE=3 SV=1
Length = 217
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 146/177 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R++ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 38 ERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 97
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I+PDVST+C+GLAASMGAFLL++GAKGKR++LPNSR+MIHQPLGGA+G +
Sbjct: 98 MAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQAS 157
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284
DI+IQA E+L+ K LN LA HTGQ +E+I +DTDRD FMS ++AK YGLID V++
Sbjct: 158 DIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLL 214
>sp|Q1BH85|CLPP_BURCA ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1
Length = 217
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 146/177 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R++ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 38 ERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 97
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I+PDVST+C+GLAASMGAFLL++GAKGKR++LPNSR+MIHQPLGGA+G +
Sbjct: 98 MAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQAS 157
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284
DI+IQA E+L+ K LN LA HTGQ +E+I +DTDRD FMS ++AK YGLID V++
Sbjct: 158 DIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLL 214
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 149/190 (78%), Gaps = 1/190 (0%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G V+DD+ANIIVAQLL+L++ DP K I +Y+NSPGGSVTAG
Sbjct: 14 ERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAG 73
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM++++ VST+CVG AASMGA LL AGAKGKRY+LPNSRIMIHQPLGGAQG T
Sbjct: 74 LAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQAT 133
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DIDIQA E+L ++ +NG + HTG ++E+I +DT+RDYFMS ++A+ YGLID V+
Sbjct: 134 DIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVV-EKQ 192
Query: 288 KALQPLPAAA 297
+ + P PA A
Sbjct: 193 RVIAPTPAPA 202
>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1
Length = 206
Score = 237 bits (604), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/183 (61%), Positives = 144/183 (78%), Gaps = 1/183 (0%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G +DDD+AN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAG
Sbjct: 17 ERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAG 76
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM++++ VST+CVG AASMGA LL AGAKGKRY+LP+SRIMIHQPLGG +G T
Sbjct: 77 LAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQAT 136
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI+IQA E+L KA LN + HTGQS+E++ +DTDRDYFM EAK YG+ID I NP
Sbjct: 137 DIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDE-IQNPR 195
Query: 288 KAL 290
K +
Sbjct: 196 KVV 198
>sp|Q39FE8|CLPP_BURS3 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp.
(strain 383) GN=clpP PE=3 SV=1
Length = 217
Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 146/178 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R++ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 38 ERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 97
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I+PDVST+C+GLAASMGAFLL++GAKGKR++LPNSR+MIHQPLGGA+G +
Sbjct: 98 MAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQAS 157
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285
DI+IQA E+L+ K LN LA HTGQ +E+I +DTDRD FMS ++AK YGLID V++
Sbjct: 158 DIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLK 215
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 144/176 (81%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G A+DD +AN+++AQ+L+L+A DP KDI +Y+NSPGGS++AG
Sbjct: 16 ERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAG 75
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAIFDTM++IRPDVST+CVGLAASMGAFLL+AGAKGKR++LPNS IMIHQP+GG QG
Sbjct: 76 MAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAV 135
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+I A +L + NLN L+ TG+ LE+I +DTDRD+FM+ +EA++YGLID VI
Sbjct: 136 DIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI 191
>sp|Q30NX1|CLPP_SULDN ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP
PE=3 SV=1
Length = 196
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 142/181 (78%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G V+D +A+ IVAQ+L+L+A DP KDI Y+NSPGG VTAG
Sbjct: 15 ERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPGGVVTAG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM +IRPDV+T+CVG AASMGAFLLS+GAKGKRY+LP++RIMIHQPLGGAQG T
Sbjct: 75 MAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYALPHARIMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
DI IQA E+L K LN LA + QS++K+ +DTDRD FMS +E+K+YG+ID V++
Sbjct: 135 DIAIQAKEILRMKEELNAILAKNCSQSIKKVEKDTDRDNFMSAEESKEYGMIDEVLLKKS 194
Query: 288 K 288
K
Sbjct: 195 K 195
>sp|Q7V9L6|CLPP3_PROMA ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=clpP3 PE=3
SV=1
Length = 216
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/176 (63%), Positives = 142/176 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G V+D +A+ +VAQ+L+L+A DP KDI +Y+NSPGGSVTAG
Sbjct: 37 ERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQLYINSPGGSVTAG 96
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM+ + PD+ T+C GLAASMGAFLL+ G+KGKR +LPNSRIMIHQPLGGAQG
Sbjct: 97 LAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAV 156
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
+I+IQA E+L K LN LA HTGQSLEKI++DTDRD+F+SP+EA +YGLID V+
Sbjct: 157 EIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212
>sp|A4JF05|CLPP_BURVG ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1
Length = 217
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 145/177 (81%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R++ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 38 ERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 97
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ I+PDVST+C+GLAASMGAFLL++GAKGKR++LPNSR+MIHQPLGGA+G +
Sbjct: 98 MAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQAS 157
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284
DI+IQA E+L+ K LN LA HTGQ +E+I +DTDRD FMS +AK YGLID V++
Sbjct: 158 DIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSDDAKAYGLIDQVLL 214
>sp|Q46ID4|CLPP3_PROMT ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain NATL2A) GN=clpP3 PE=3 SV=1
Length = 194
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 143/178 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
+R + S+L + RII G V+D +A+ +VAQ+L+L+A DP KDI +YVNSPGGSVTAG
Sbjct: 13 DRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAG 72
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR +LPNSRIMIHQPLGGAQG
Sbjct: 73 LAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAV 132
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285
+I+IQA E+L+ K LN LA HTGQ+++KI++DTDRD+F+SP+EA +YGLID V+ N
Sbjct: 133 EIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVVSN 190
>sp|Q8DJZ9|CLPP2_THEEB ATP-dependent Clp protease proteolytic subunit 2
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2
PE=3 SV=1
Length = 198
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 144/183 (78%), Gaps = 2/183 (1%)
Query: 101 PANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSP 160
P P Q + + ++L++ RII G VDD++AN IVA +LYLD+ DP KDI++Y+NSP
Sbjct: 13 PGEPYTQ--WIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSP 70
Query: 161 GGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLG 220
GGSVTAGMAI+DTM+HI+ DV T+CVGLAASMG+FLL+AG KGKR +LP+SRIMIHQP G
Sbjct: 71 GGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSG 130
Query: 221 GAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLID 280
G +G TDI+I+A E+L + LN AYHTGQ LEKI +D DRD+FMS +EAK+YGLID
Sbjct: 131 GTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLID 190
Query: 281 GVI 283
VI
Sbjct: 191 RVI 193
>sp|Q3AF96|CLPP_CARHZ ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3
SV=1
Length = 195
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 140/176 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R I GG +DD +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAG
Sbjct: 16 ERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAG 75
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM++I+PDVST+C+G AASMGAFLL+AGAKGKR+SLP +RIMIHQPLGG QG T
Sbjct: 76 MAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQAT 135
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DIDI A E+L + LN L HTGQ EKI +DT+RD+FMS EAK+YG+ID VI
Sbjct: 136 DIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/176 (61%), Positives = 141/176 (80%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G A+DD++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG T
Sbjct: 75 FAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
+I+I AN +L + LN LA TGQS+EKI +DTDRD F++ EAK+YGLID V+
Sbjct: 135 EIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVM 190
>sp|Q88KJ0|CLPP_PSEPK ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain KT2440) GN=clpP PE=3 SV=1
Length = 213
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 139/175 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R+I G V+D MAN++VAQLL+L+A +P KDI +Y+NSPGGSVTAG
Sbjct: 31 ERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAG 90
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M+I+DTM+ I+PDVST+C+G A SMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG T
Sbjct: 91 MSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQAT 150
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 282
DI+I A E+L+ KA LN LAYHTGQ LE I +DT+RD FMS A +YGLID V
Sbjct: 151 DIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205
>sp|A5W635|CLPP_PSEP1 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1
Length = 213
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 139/175 (79%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + R+I G V+D MAN++VAQLL+L+A +P KDI +Y+NSPGGSVTAG
Sbjct: 31 ERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAG 90
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M+I+DTM+ I+PDVST+C+G A SMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG T
Sbjct: 91 MSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQAT 150
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 282
DI+I A E+L+ KA LN LAYHTGQ LE I +DT+RD FMS A +YGLID V
Sbjct: 151 DIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205
>sp|A6Q1C1|CLPP_NITSB ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp.
(strain SB155-2) GN=clpP PE=3 SV=1
Length = 196
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 144/176 (81%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G ++D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G
Sbjct: 16 ERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSG 75
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
M+I+DTM +I+PDVST+C+G AASMGAFLLS+G KGKRY+LP++RIMIHQPLGGAQG T
Sbjct: 76 MSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQAT 135
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 283
DI+IQA E+L K LN LA +TGQS++KI +DT+RD+FMS +EAK+YGLID V+
Sbjct: 136 DIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEYGLIDQVL 191
>sp|A8ZXB7|CLPP_DESOH ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1
Length = 205
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 148/191 (77%), Gaps = 6/191 (3%)
Query: 101 PANPMV------QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIV 154
P PMV ER + S+L + RI+ G A+DD+ AN+++AQLL+L++ DP KDI
Sbjct: 2 PLIPMVIEQTSRGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDIN 61
Query: 155 IYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIM 214
Y+NSPGG V+AGMAI+DTM++I+ D++TVC+G AASMGAFLL+AGAKGKR+SLPNSRIM
Sbjct: 62 FYINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIM 121
Query: 215 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAK 274
IHQP+GGAQG +DI IQA E+L K LN LA+HTG+ LE+I DTDRD+FMS +EAK
Sbjct: 122 IHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAK 181
Query: 275 DYGLIDGVIMN 285
YG++D VI +
Sbjct: 182 AYGIVDHVITD 192
>sp|Q2SWQ6|CLPP_BURTA ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=clpP PE=3 SV=1
Length = 207
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 145/175 (82%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RI+ G V+D AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AG
Sbjct: 28 ERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAG 87
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
MAI+DTM+ ++PDVST+C+GLAASMGAFLL++GAKGKRY+LPN+R+MIHQPLGGA+G +
Sbjct: 88 MAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQAS 147
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 282
DI+IQA E+L+ K LN LA+HTGQ +E+I +DTDRD FMS ++AK YGLID V
Sbjct: 148 DIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202
>sp|B9DJL4|CLPP_STACT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
carnosus (strain TM300) GN=clpP PE=3 SV=1
Length = 194
Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 143/181 (79%), Gaps = 1/181 (0%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G A+DD++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG T
Sbjct: 75 FAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
+I+I A +L +A LN LA TGQS+E+I +DTDRD F++ EAK+YGLID V M P
Sbjct: 135 EIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEV-MQPE 193
Query: 288 K 288
K
Sbjct: 194 K 194
>sp|Q8CTE0|CLPP_STAES ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1
Length = 194
Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 142/181 (78%), Gaps = 1/181 (0%)
Query: 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAG 167
ER + S+L + RII G +DD++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAG 74
Query: 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQT 227
AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG T
Sbjct: 75 FAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 134
Query: 228 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287
+I+I AN +L + LN L+ TGQS+EKI QDTDRD F++ EAK+YGLID V M P
Sbjct: 135 EIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEV-MEPE 193
Query: 288 K 288
K
Sbjct: 194 K 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,526,044
Number of Sequences: 539616
Number of extensions: 4961516
Number of successful extensions: 13620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12622
Number of HSP's gapped (non-prelim): 801
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)