Query 021957
Match_columns 305
No_of_seqs 247 out of 1540
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 6.5E-66 1.4E-70 471.7 21.4 264 24-302 11-274 (275)
2 COG0740 ClpP Protease subunit 100.0 4.6E-57 9.9E-62 404.4 21.0 180 107-286 14-193 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 1.8E-54 3.9E-59 394.3 22.0 195 83-286 2-215 (222)
4 PRK14514 ATP-dependent Clp pro 100.0 4.2E-54 9.1E-59 392.1 22.3 180 107-286 41-220 (221)
5 PRK14513 ATP-dependent Clp pro 100.0 2.7E-53 5.9E-58 382.1 22.2 178 108-285 15-192 (201)
6 CHL00028 clpP ATP-dependent Cl 100.0 2.5E-53 5.3E-58 382.2 21.7 195 83-286 2-197 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 3.2E-52 7E-57 373.9 21.3 179 108-286 13-191 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 3.5E-48 7.5E-53 346.2 21.6 177 108-284 14-190 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 2E-47 4.4E-52 343.4 22.8 198 83-288 2-199 (200)
10 PRK14512 ATP-dependent Clp pro 100.0 1.2E-47 2.7E-52 344.4 20.7 180 112-291 15-194 (197)
11 PF00574 CLP_protease: Clp pro 100.0 2.1E-46 4.5E-51 329.4 15.4 179 107-285 3-181 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 1.9E-45 4.1E-50 332.3 20.7 179 110-288 25-205 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 3.4E-44 7.4E-49 314.3 18.1 171 112-282 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2.6E-43 5.6E-48 306.9 19.3 162 121-282 1-162 (162)
15 cd07015 Clp_protease_NfeD Nodu 100.0 4.1E-33 8.8E-38 245.8 18.3 161 122-291 3-171 (172)
16 cd07016 S14_ClpP_1 Caseinolyti 100.0 4.1E-33 8.9E-38 240.4 17.7 156 122-282 2-160 (160)
17 cd00394 Clp_protease_like Case 100.0 1.5E-30 3.2E-35 223.6 17.8 159 122-282 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 1.3E-27 2.9E-32 212.0 18.3 165 122-290 3-170 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 2.8E-26 6.1E-31 203.2 17.6 162 122-291 3-177 (178)
20 TIGR00706 SppA_dom signal pept 99.9 1.3E-20 2.7E-25 169.8 17.2 159 122-284 4-194 (207)
21 COG0616 SppA Periplasmic serin 99.9 7.1E-21 1.5E-25 182.2 15.3 161 122-285 63-262 (317)
22 cd07023 S49_Sppa_N_C Signal pe 99.8 3.9E-20 8.4E-25 166.2 16.6 160 122-284 4-199 (208)
23 cd07014 S49_SppA Signal peptid 99.8 1.7E-19 3.8E-24 158.2 16.6 143 133-284 23-168 (177)
24 TIGR00705 SppA_67K signal pept 99.8 1E-19 2.2E-24 186.8 17.4 166 122-291 312-516 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.8 6.3E-19 1.4E-23 159.4 16.9 159 122-284 4-205 (214)
26 PRK10949 protease 4; Provision 99.8 1.2E-18 2.6E-23 179.8 16.9 166 122-291 330-534 (618)
27 cd07019 S49_SppA_1 Signal pept 99.8 3.5E-18 7.6E-23 154.4 16.4 160 122-284 4-202 (211)
28 COG1030 NfeD Membrane-bound se 99.7 1.1E-17 2.5E-22 164.5 14.0 168 121-296 29-199 (436)
29 PRK11778 putative inner membra 99.7 8.6E-17 1.9E-21 154.8 15.9 159 122-285 94-286 (330)
30 cd07018 S49_SppA_67K_type Sign 99.7 8.9E-17 1.9E-21 146.3 14.1 158 128-290 25-217 (222)
31 PF01972 SDH_sah: Serine dehyd 99.6 4.9E-14 1.1E-18 132.0 15.2 147 126-279 69-242 (285)
32 TIGR00705 SppA_67K signal pept 99.3 1.4E-11 2.9E-16 127.1 14.6 150 132-284 76-268 (584)
33 PF01343 Peptidase_S49: Peptid 99.3 2.9E-11 6.2E-16 104.3 9.9 114 174-291 2-145 (154)
34 PRK10949 protease 4; Provision 99.2 1.2E-10 2.6E-15 120.7 14.0 151 132-285 95-288 (618)
35 cd06558 crotonase-like Crotona 98.9 5.6E-08 1.2E-12 85.1 14.0 138 129-285 23-181 (195)
36 COG3904 Predicted periplasmic 98.7 1.4E-07 3.1E-12 85.7 12.2 158 116-281 70-236 (245)
37 PRK05869 enoyl-CoA hydratase; 98.6 1.8E-06 3.8E-11 78.9 15.4 144 123-285 21-187 (222)
38 PRK06688 enoyl-CoA hydratase; 98.6 1.4E-06 3.1E-11 80.5 14.9 144 123-285 18-184 (259)
39 PRK08258 enoyl-CoA hydratase; 98.6 1.9E-06 4.1E-11 80.9 15.4 139 129-285 41-202 (277)
40 PRK07511 enoyl-CoA hydratase; 98.5 2E-06 4.4E-11 79.8 14.6 144 123-285 16-186 (260)
41 PRK06495 enoyl-CoA hydratase; 98.5 1.9E-06 4.2E-11 79.9 14.2 142 122-285 16-182 (257)
42 PRK03580 carnitinyl-CoA dehydr 98.5 2.6E-06 5.5E-11 79.3 14.7 145 122-285 15-182 (261)
43 PRK06143 enoyl-CoA hydratase; 98.5 2.7E-06 5.9E-11 79.1 14.5 144 122-285 19-187 (256)
44 PRK11423 methylmalonyl-CoA dec 98.5 3.6E-06 7.8E-11 78.5 14.7 143 123-285 17-184 (261)
45 PRK06210 enoyl-CoA hydratase; 98.5 3E-06 6.6E-11 79.1 14.1 144 123-285 19-196 (272)
46 PRK09674 enoyl-CoA hydratase-i 98.5 4.3E-06 9.4E-11 77.5 14.9 138 129-285 26-180 (255)
47 PRK06190 enoyl-CoA hydratase; 98.5 5.7E-06 1.2E-10 77.2 15.6 138 129-285 28-182 (258)
48 PRK05981 enoyl-CoA hydratase; 98.5 4E-06 8.6E-11 78.1 14.4 138 129-285 28-191 (266)
49 PRK08138 enoyl-CoA hydratase; 98.5 5.7E-06 1.2E-10 77.0 15.3 138 129-285 32-186 (261)
50 TIGR03189 dienoyl_CoA_hyt cycl 98.5 4.9E-06 1.1E-10 77.2 14.7 143 123-285 14-176 (251)
51 PRK07509 enoyl-CoA hydratase; 98.5 4.1E-06 8.8E-11 77.7 14.1 145 122-285 15-190 (262)
52 PF00378 ECH: Enoyl-CoA hydrat 98.5 3.2E-06 6.9E-11 77.4 13.0 136 129-286 22-179 (245)
53 PRK09076 enoyl-CoA hydratase; 98.4 6.7E-06 1.4E-10 76.4 15.0 144 123-285 16-183 (258)
54 PRK07110 polyketide biosynthes 98.4 4.3E-06 9.4E-11 77.3 13.6 144 123-285 18-182 (249)
55 PRK06023 enoyl-CoA hydratase; 98.4 6.9E-06 1.5E-10 76.0 14.8 138 129-285 30-185 (251)
56 PLN02664 enoyl-CoA hydratase/d 98.4 5.6E-06 1.2E-10 77.7 14.3 143 123-285 21-199 (275)
57 PRK12319 acetyl-CoA carboxylas 98.4 8E-06 1.7E-10 76.7 15.2 137 119-286 69-215 (256)
58 TIGR03210 badI 2-ketocyclohexa 98.4 5.7E-06 1.2E-10 76.9 14.2 138 129-285 26-182 (256)
59 PRK08260 enoyl-CoA hydratase; 98.4 5.9E-06 1.3E-10 78.4 14.5 138 129-285 28-201 (296)
60 PRK07468 enoyl-CoA hydratase; 98.4 5.3E-06 1.1E-10 77.3 13.9 137 129-285 29-187 (262)
61 PRK07658 enoyl-CoA hydratase; 98.4 6.5E-06 1.4E-10 76.2 14.4 138 129-285 25-182 (257)
62 PLN02888 enoyl-CoA hydratase 98.4 8.6E-06 1.9E-10 76.2 15.2 143 123-285 23-187 (265)
63 PRK05809 3-hydroxybutyryl-CoA 98.4 6.5E-06 1.4E-10 76.4 14.2 136 129-285 28-185 (260)
64 PRK05980 enoyl-CoA hydratase; 98.4 5.5E-06 1.2E-10 76.9 13.7 144 123-285 16-188 (260)
65 PLN02600 enoyl-CoA hydratase 98.4 8.4E-06 1.8E-10 75.5 14.9 138 129-285 19-176 (251)
66 PRK06142 enoyl-CoA hydratase; 98.4 4.3E-06 9.4E-11 78.1 13.1 143 123-285 19-197 (272)
67 TIGR00513 accA acetyl-CoA carb 98.4 6.6E-06 1.4E-10 79.4 14.5 137 119-286 122-268 (316)
68 PRK09245 enoyl-CoA hydratase; 98.4 8.9E-06 1.9E-10 75.7 15.0 138 129-285 27-191 (266)
69 PLN03230 acetyl-coenzyme A car 98.4 5.9E-06 1.3E-10 82.1 14.4 130 126-286 199-338 (431)
70 PLN02921 naphthoate synthase 98.4 8.4E-06 1.8E-10 78.9 15.3 144 123-285 80-249 (327)
71 PRK05724 acetyl-CoA carboxylas 98.4 8.2E-06 1.8E-10 78.8 15.0 137 119-286 122-268 (319)
72 TIGR01929 menB naphthoate synt 98.4 7.3E-06 1.6E-10 76.2 14.3 138 129-285 27-185 (259)
73 PRK07854 enoyl-CoA hydratase; 98.4 7.6E-06 1.6E-10 75.5 14.2 143 122-284 12-173 (243)
74 PRK08150 enoyl-CoA hydratase; 98.4 1.1E-05 2.4E-10 75.0 15.2 136 129-285 26-180 (255)
75 PRK08139 enoyl-CoA hydratase; 98.4 1.1E-05 2.3E-10 75.5 15.0 143 123-285 24-191 (266)
76 PRK07396 dihydroxynaphthoic ac 98.4 1E-05 2.2E-10 75.9 14.8 138 129-285 37-195 (273)
77 PRK05995 enoyl-CoA hydratase; 98.4 8.8E-06 1.9E-10 75.6 14.3 136 129-284 28-185 (262)
78 PRK07938 enoyl-CoA hydratase; 98.4 6.9E-06 1.5E-10 76.1 13.4 141 122-284 14-178 (249)
79 PRK05864 enoyl-CoA hydratase; 98.4 8.9E-06 1.9E-10 76.4 14.3 144 123-285 23-198 (276)
80 PRK06127 enoyl-CoA hydratase; 98.4 1.4E-05 3E-10 74.8 15.5 144 123-285 24-194 (269)
81 PRK06072 enoyl-CoA hydratase; 98.4 1.1E-05 2.4E-10 74.6 14.6 141 122-282 12-173 (248)
82 PLN03214 probable enoyl-CoA hy 98.4 9.3E-06 2E-10 76.6 14.3 145 123-285 25-196 (278)
83 TIGR02280 PaaB1 phenylacetate 98.4 1.2E-05 2.5E-10 74.6 14.7 143 123-285 12-181 (256)
84 PRK06494 enoyl-CoA hydratase; 98.4 1.3E-05 2.9E-10 74.4 15.1 138 129-285 28-182 (259)
85 PRK07327 enoyl-CoA hydratase; 98.4 1.2E-05 2.7E-10 75.1 14.9 138 129-285 36-194 (268)
86 PRK06144 enoyl-CoA hydratase; 98.3 1.3E-05 2.9E-10 74.6 14.7 139 129-285 32-191 (262)
87 PRK07260 enoyl-CoA hydratase; 98.3 1.3E-05 2.7E-10 74.4 14.3 136 129-285 26-186 (255)
88 PRK08140 enoyl-CoA hydratase; 98.3 1.7E-05 3.7E-10 73.7 15.0 137 129-285 28-187 (262)
89 PRK06563 enoyl-CoA hydratase; 98.3 1.7E-05 3.6E-10 73.5 14.8 144 123-285 12-180 (255)
90 PRK08290 enoyl-CoA hydratase; 98.3 9.8E-06 2.1E-10 76.8 13.3 136 129-285 28-204 (288)
91 PRK05862 enoyl-CoA hydratase; 98.3 2E-05 4.4E-10 73.0 14.9 138 129-285 28-182 (257)
92 CHL00198 accA acetyl-CoA carbo 98.3 7.3E-06 1.6E-10 79.2 12.2 137 119-286 125-271 (322)
93 PRK07657 enoyl-CoA hydratase; 98.3 2.2E-05 4.9E-10 72.9 15.0 142 123-285 17-185 (260)
94 PLN02267 enoyl-CoA hydratase/i 98.3 2.2E-05 4.7E-10 72.4 14.8 147 122-286 12-185 (239)
95 PRK09120 p-hydroxycinnamoyl Co 98.3 2.3E-05 5E-10 73.7 15.1 138 129-285 32-192 (275)
96 PRK05674 gamma-carboxygeranoyl 98.3 1.8E-05 3.9E-10 73.9 14.2 137 129-285 30-188 (265)
97 PRK05870 enoyl-CoA hydratase; 98.3 1.2E-05 2.6E-10 74.3 12.4 133 129-283 27-181 (249)
98 PRK08321 naphthoate synthase; 98.3 3.4E-05 7.4E-10 73.6 15.7 145 122-285 37-224 (302)
99 PRK07799 enoyl-CoA hydratase; 98.3 2.9E-05 6.2E-10 72.3 14.7 145 122-285 17-188 (263)
100 PRK06213 enoyl-CoA hydratase; 98.3 3.1E-05 6.7E-10 70.7 14.6 133 129-284 26-179 (229)
101 PRK07112 polyketide biosynthes 98.2 2.2E-05 4.8E-10 72.9 13.7 136 129-286 28-184 (255)
102 PRK08252 enoyl-CoA hydratase; 98.2 3.5E-05 7.5E-10 71.5 14.8 144 123-285 16-179 (254)
103 PRK08259 enoyl-CoA hydratase; 98.2 3.5E-05 7.7E-10 71.5 14.6 138 129-285 27-181 (254)
104 PRK08788 enoyl-CoA hydratase; 98.2 2.6E-05 5.7E-10 74.2 13.8 138 129-285 40-209 (287)
105 KOG1680 Enoyl-CoA hydratase [L 98.2 1.1E-05 2.3E-10 76.4 10.6 143 122-286 49-216 (290)
106 PRK07659 enoyl-CoA hydratase; 98.2 2.7E-05 5.9E-10 72.4 13.3 135 129-283 30-184 (260)
107 TIGR03200 dearomat_oah 6-oxocy 98.2 3.8E-05 8.1E-10 75.4 14.6 137 129-285 52-212 (360)
108 PRK08272 enoyl-CoA hydratase; 98.2 4.1E-05 8.8E-10 72.9 14.6 140 123-284 23-211 (302)
109 PRK12478 enoyl-CoA hydratase; 98.2 2.2E-05 4.8E-10 74.8 12.5 140 123-285 18-197 (298)
110 PRK07827 enoyl-CoA hydratase; 98.2 3.8E-05 8.3E-10 71.3 13.4 134 129-285 30-188 (260)
111 PLN03229 acetyl-coenzyme A car 98.1 4.5E-05 9.8E-10 80.2 14.5 129 127-286 221-359 (762)
112 COG1024 CaiD Enoyl-CoA hydrata 98.1 2.6E-05 5.6E-10 72.3 11.6 138 128-286 28-187 (257)
113 PRK08184 benzoyl-CoA-dihydrodi 98.1 5.7E-05 1.2E-09 78.0 13.3 140 129-284 49-215 (550)
114 PRK05617 3-hydroxyisobutyryl-C 98.0 5.1E-05 1.1E-09 73.7 12.1 134 129-285 27-187 (342)
115 TIGR03134 malonate_gamma malon 98.0 0.0001 2.2E-09 68.6 13.2 130 129-286 45-190 (238)
116 PLN02851 3-hydroxyisobutyryl-C 98.0 0.00014 3.1E-09 72.5 15.1 145 121-285 53-225 (407)
117 PLN02157 3-hydroxyisobutyryl-C 98.0 0.00013 2.8E-09 72.6 14.1 143 122-285 49-220 (401)
118 TIGR02440 FadJ fatty oxidation 98.0 0.00013 2.8E-09 77.2 14.1 138 129-285 26-186 (699)
119 TIGR03222 benzo_boxC benzoyl-C 97.9 0.00012 2.7E-09 75.4 13.2 140 129-285 45-212 (546)
120 PLN02874 3-hydroxyisobutyryl-C 97.9 0.00019 4.1E-09 70.8 14.0 144 122-285 23-192 (379)
121 PLN02988 3-hydroxyisobutyryl-C 97.9 0.00022 4.8E-09 70.5 14.0 144 122-285 21-192 (381)
122 PRK11730 fadB multifunctional 97.9 0.00021 4.7E-09 75.7 14.7 144 123-285 20-190 (715)
123 TIGR02437 FadB fatty oxidation 97.9 0.00027 5.9E-09 75.0 15.3 145 122-285 19-190 (714)
124 PRK11154 fadJ multifunctional 97.8 0.00036 7.8E-09 74.0 15.2 138 129-285 31-191 (708)
125 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00048 1E-08 73.4 14.9 137 129-285 38-198 (737)
126 TIGR03222 benzo_boxC benzoyl-C 97.6 0.0012 2.5E-08 68.4 14.6 139 129-285 295-465 (546)
127 TIGR01117 mmdA methylmalonyl-C 97.5 0.00074 1.6E-08 69.2 11.7 91 126-220 328-432 (512)
128 COG0825 AccA Acetyl-CoA carbox 97.3 0.00042 9.2E-09 66.1 6.5 109 150-287 150-268 (317)
129 PRK08184 benzoyl-CoA-dihydrodi 97.3 0.0034 7.4E-08 65.0 12.5 139 129-285 299-469 (550)
130 PLN02820 3-methylcrotonyl-CoA 97.1 0.0043 9.4E-08 64.5 11.0 91 126-218 379-481 (569)
131 TIGR03133 malonate_beta malona 97.0 0.0061 1.3E-07 58.0 10.8 93 124-218 70-176 (274)
132 PRK05654 acetyl-CoA carboxylas 97.0 0.014 3.1E-07 56.0 12.9 91 124-218 132-233 (292)
133 PF01039 Carboxyl_trans: Carbo 96.9 0.0035 7.6E-08 63.9 8.9 90 127-218 308-409 (493)
134 TIGR00515 accD acetyl-CoA carb 96.9 0.016 3.5E-07 55.4 12.2 124 124-285 131-265 (285)
135 KOG1681 Enoyl-CoA isomerase [L 96.0 0.0032 6.9E-08 58.7 1.9 109 166-292 114-222 (292)
136 PRK07189 malonate decarboxylas 96.0 0.04 8.6E-07 53.2 9.4 92 124-218 79-185 (301)
137 KOG1679 Enoyl-CoA hydratase [L 96.0 0.024 5.1E-07 52.6 7.4 131 133-286 59-213 (291)
138 CHL00174 accD acetyl-CoA carbo 95.2 0.29 6.2E-06 47.2 11.8 91 124-218 144-246 (296)
139 COG4799 Acetyl-CoA carboxylase 94.4 0.11 2.5E-06 53.5 7.3 91 126-218 337-439 (526)
140 PF06833 MdcE: Malonate decarb 94.1 0.64 1.4E-05 43.5 11.0 112 146-284 60-186 (234)
141 COG0447 MenB Dihydroxynaphthoi 93.9 0.16 3.4E-06 47.4 6.4 133 131-284 45-203 (282)
142 PLN02820 3-methylcrotonyl-CoA 93.4 0.61 1.3E-05 48.8 10.5 91 124-218 140-244 (569)
143 KOG1682 Enoyl-CoA isomerase [L 90.0 2.7 5.8E-05 39.1 9.4 99 167-285 114-212 (287)
144 TIGR01117 mmdA methylmalonyl-C 89.3 2.7 5.8E-05 43.4 10.1 91 124-218 93-193 (512)
145 KOG0016 Enoyl-CoA hydratase/is 87.8 4.4 9.5E-05 38.5 9.5 96 170-285 99-195 (266)
146 cd06567 Peptidase_S41 C-termin 86.9 4.3 9.4E-05 36.3 8.8 76 123-200 64-166 (224)
147 PF01039 Carboxyl_trans: Carbo 86.9 1.4 3.1E-05 45.1 6.2 91 124-218 68-170 (493)
148 COG0777 AccD Acetyl-CoA carbox 83.0 13 0.00028 35.9 10.2 87 125-219 134-235 (294)
149 cd07560 Peptidase_S41_CPP C-te 77.3 17 0.00037 32.9 8.9 87 111-200 40-153 (211)
150 TIGR00225 prc C-terminal pepti 77.0 10 0.00023 36.5 7.8 71 130-201 162-257 (334)
151 PF03572 Peptidase_S41: Peptid 73.3 18 0.00038 30.3 7.5 68 132-200 15-112 (169)
152 PLN00049 carboxyl-terminal pro 71.2 18 0.00039 35.9 8.0 69 130-199 205-300 (389)
153 PRK11186 carboxy-terminal prot 70.5 16 0.00034 39.2 7.8 67 132-199 366-458 (667)
154 cd07561 Peptidase_S41_CPP_like 69.9 32 0.0007 32.2 9.0 45 131-176 76-121 (256)
155 COG0793 Prc Periplasmic protea 67.5 20 0.00042 36.1 7.4 69 130-199 214-308 (406)
156 PF08496 Peptidase_S49_N: Pept 66.9 11 0.00024 33.0 4.9 44 122-165 102-146 (155)
157 KOG0540 3-Methylcrotonyl-CoA c 66.5 51 0.0011 34.0 9.9 84 127-215 363-460 (536)
158 smart00245 TSPc tail specific 64.9 43 0.00094 29.5 8.4 71 129-200 38-134 (192)
159 cd07563 Peptidase_S41_IRBP Int 61.6 49 0.0011 30.3 8.4 52 150-201 95-180 (250)
160 cd07562 Peptidase_S41_TRI Tric 60.1 65 0.0014 29.9 9.1 82 115-201 82-186 (266)
161 PLN00125 Succinyl-CoA ligase [ 59.3 33 0.00072 33.2 7.1 65 121-190 179-245 (300)
162 KOG1684 Enoyl-CoA hydratase [L 56.1 41 0.00088 33.8 7.1 96 120-217 48-179 (401)
163 TIGR02886 spore_II_AA anti-sig 55.1 84 0.0018 24.4 7.7 75 122-200 11-91 (106)
164 PF13607 Succ_CoA_lig: Succiny 54.8 38 0.00082 28.9 6.0 61 120-188 29-91 (138)
165 cd07041 STAS_RsbR_RsbS_like Su 52.7 1.1E+02 0.0024 23.9 8.3 80 122-201 13-94 (109)
166 PF01740 STAS: STAS domain; I 51.7 1E+02 0.0023 24.2 7.8 80 121-200 11-100 (117)
167 TIGR00377 ant_ant_sig anti-ant 48.3 1.2E+02 0.0026 23.4 7.6 74 122-199 15-94 (108)
168 COG0074 SucD Succinyl-CoA synt 47.4 64 0.0014 31.3 6.8 77 122-214 175-254 (293)
169 cd07043 STAS_anti-anti-sigma_f 45.4 1.3E+02 0.0027 22.5 7.2 79 121-200 10-90 (99)
170 PF03808 Glyco_tran_WecB: Glyc 43.5 1.5E+02 0.0032 25.8 8.1 64 120-190 49-113 (172)
171 COG4799 Acetyl-CoA carboxylase 43.2 65 0.0014 33.7 6.5 90 125-218 103-202 (526)
172 PHA00099 minor capsid protein 42.1 1.8E+02 0.0039 25.1 8.0 57 236-296 70-129 (147)
173 PTZ00187 succinyl-CoA syntheta 40.9 85 0.0019 30.7 6.7 66 120-190 197-264 (317)
174 PLN02522 ATP citrate (pro-S)-l 38.4 85 0.0018 33.5 6.7 66 120-190 195-262 (608)
175 PRK06091 membrane protein FdrA 37.1 83 0.0018 33.2 6.3 68 121-190 222-291 (555)
176 TIGR00615 recR recombination p 36.7 1.1E+02 0.0024 28.0 6.3 84 105-189 82-174 (195)
177 cd06533 Glyco_transf_WecG_TagA 35.4 2.5E+02 0.0054 24.4 8.3 67 120-192 47-113 (171)
178 COG0757 AroQ 3-dehydroquinate 31.1 1.1E+02 0.0023 26.8 5.0 29 155-184 70-98 (146)
179 TIGR02364 dha_pts dihydroxyace 30.5 2.3E+02 0.0051 23.7 6.9 67 111-180 17-88 (125)
180 TIGR00282 metallophosphoestera 30.5 1.2E+02 0.0026 28.8 5.7 64 121-185 2-66 (266)
181 cd01025 TOPRIM_recR TOPRIM_rec 29.1 2.1E+02 0.0046 23.8 6.3 82 107-189 6-96 (112)
182 TIGR01019 sucCoAalpha succinyl 27.7 2.3E+02 0.0049 27.2 7.1 63 121-190 172-237 (286)
183 cd01455 vWA_F11C1-5a_type Von 27.6 2.4E+02 0.0052 25.6 6.9 75 111-188 74-152 (191)
184 COG3904 Predicted periplasmic 26.9 1.4E+02 0.0031 27.9 5.3 71 123-197 51-129 (245)
185 PLN02727 NAD kinase 26.5 2.1E+02 0.0045 32.3 7.3 50 149-198 310-361 (986)
186 smart00250 PLEC Plectin repeat 26.2 44 0.00096 21.9 1.5 18 265-282 19-36 (38)
187 PF14566 PTPlike_phytase: Inos 25.9 2.4E+02 0.0051 24.0 6.3 51 120-175 91-149 (149)
188 PRK13844 recombination protein 25.1 2E+02 0.0043 26.5 5.9 82 105-188 86-176 (200)
189 TIGR00673 cynS cyanate hydrata 24.5 2E+02 0.0044 25.2 5.6 37 246-282 26-66 (150)
190 COG1366 SpoIIAA Anti-anti-sigm 24.1 1.5E+02 0.0033 23.7 4.6 38 122-161 16-53 (117)
191 PRK05678 succinyl-CoA syntheta 23.8 3.2E+02 0.007 26.2 7.4 63 121-190 174-239 (291)
192 TIGR00661 MJ1255 conserved hyp 23.7 1.3E+02 0.0028 28.4 4.7 35 153-188 2-37 (321)
193 PF01381 HTH_3: Helix-turn-hel 23.6 1.2E+02 0.0026 20.6 3.4 31 245-275 13-43 (55)
194 KOG3093 5-formyltetrahydrofola 23.2 1.2E+02 0.0027 27.7 4.2 45 134-178 31-75 (200)
195 PF00681 Plectin: Plectin repe 23.0 40 0.00087 23.1 0.8 20 263-282 17-36 (45)
196 COG4710 Predicted DNA-binding 22.6 97 0.0021 24.2 2.9 35 239-275 16-57 (80)
197 COG3093 VapI Plasmid maintenan 22.4 1E+02 0.0022 25.5 3.2 33 245-277 27-59 (104)
198 cd07382 MPP_DR1281 Deinococcus 22.1 2.1E+02 0.0046 26.9 5.7 64 121-186 1-66 (255)
199 TIGR01579 MiaB-like-C MiaB-lik 21.6 2.9E+02 0.0064 27.2 6.9 71 122-192 1-77 (414)
200 COG1512 Beta-propeller domains 21.5 2.1E+02 0.0046 27.4 5.6 55 119-173 33-89 (271)
201 TIGR02717 AcCoA-syn-alpha acet 21.2 2.1E+02 0.0045 28.9 5.9 63 120-190 178-242 (447)
202 PRK13170 hisH imidazole glycer 20.9 76 0.0016 28.2 2.4 29 160-188 45-80 (196)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-66 Score=471.67 Aligned_cols=264 Identities=49% Similarity=0.739 Sum_probs=238.8
Q ss_pred CCccccccccccCCCCCCCCcchhhhhhhcCCcceeEeecCcccccCCCCccccccccCCCCCCCCCCcccccCCCCCCC
Q 021957 24 SNIDAHKLSHTFRPIGSRKPRKLVSIQKNLRNSSVRAVYSGKFWAPDRSYRQGIWSIRDDLQIPSSPYFPVHAQGPPPAN 103 (305)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (305)
+++.+-++...+.|...+.|.+....+|....++-++++.+.-+++. .|+++.+.++|..++.. .++|
T Consensus 11 s~~~~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~~------~~~~~~~~~~p~~~~~~---~~rG--- 78 (275)
T KOG0840|consen 11 SSSSSPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNSR------GWSLRAPILVPRFPIES---PGRG--- 78 (275)
T ss_pred CcccccchhcccCchhhhhccccccchhhhhccCcccccccCCCCCC------cccccccccCCcceeec---cccC---
Confidence 33445566777888888888888888888777777888888877754 89999999999443333 4454
Q ss_pred CccchhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEE
Q 021957 104 PMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVST 183 (305)
Q Consensus 104 ~~~~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~T 183 (305)
.++++|+|++||++|||||+++|||++++.+++||++|+.+|++|+|+||||||||++++|++|||+|+++++||.|
T Consensus 79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST 155 (275)
T ss_pred ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence 26788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc
Q 021957 184 VCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTD 263 (305)
Q Consensus 184 vv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~ 263 (305)
+|.|+|||||++||++|.||+|+++||+++|||||.++++|++.|+.++++|+.++++.++++|++|||++.|+|.++++
T Consensus 156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~d 235 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMD 235 (275)
T ss_pred eehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHcCCcceecCCccccCCCCccccCCCCC
Q 021957 264 RDYFMSPKEAKDYGLIDGVIMNPLKALQPLPAAADGNDK 302 (305)
Q Consensus 264 rd~~lta~EA~eyGLID~Ii~~~~~~L~~~~~~~~~~~~ 302 (305)
||+||+|+||+||||||+|+.++.+.....+...+...+
T Consensus 236 Rd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~e~~~~ 274 (275)
T KOG0840|consen 236 RDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLVESAMK 274 (275)
T ss_pred ccccCCHHHHHHhcchhhhhcCCcccccccchhhhcccC
Confidence 999999999999999999999988888887777666544
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.6e-57 Score=404.35 Aligned_cols=180 Identities=62% Similarity=0.971 Sum_probs=176.3
Q ss_pred chhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe
Q 021957 107 QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 107 ~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
+++..|+|++|+++|+|||+|+|++.+++.+++||++|+++++.|+|+||||||||+|++|++|||+|+++++||+|+|.
T Consensus 14 ~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~ 93 (200)
T COG0740 14 GERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICM 93 (200)
T ss_pred CCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|+|||||++|++||++|||+++|||++|||||+++.+|+++|++++++|++++++.++++|+++||+++|+|+++++||+
T Consensus 94 G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~ 173 (200)
T COG0740 94 GQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDT 173 (200)
T ss_pred cHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCcceecCCc
Q 021957 267 FMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~~ 286 (305)
||+|+||++|||||+|+...
T Consensus 174 ~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 174 WMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred cCCHHHHHHcCCcceecccc
Confidence 99999999999999999875
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.8e-54 Score=394.31 Aligned_cols=195 Identities=44% Similarity=0.726 Sum_probs=183.0
Q ss_pred CCCCCCCCCcccccCCCCCCCCccchhhccHHHhhccCcEEEEcceeCHh----------HHHHHHHHHHHhhhcCCCCC
Q 021957 83 DLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDD----------MANIIVAQLLYLDAIDPHKD 152 (305)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~s~L~~~RII~Lgg~Idd~----------~a~~iiaqLl~L~~~d~~k~ 152 (305)
+.++|.+||..+... +. || .|++++|+++|||||+++|+++ +++.+++||++|+.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~-~~--~~------~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~ 72 (222)
T PRK12552 2 PIMAVQAPYYGDAVM-RT--PP------PDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKP 72 (222)
T ss_pred CCCcccccccCCCCC-CC--CC------cCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCC
Confidence 567889998875222 22 22 4899999999999999999999 99999999999999999999
Q ss_pred EEEEEeCCCCc---------HHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCcc
Q 021957 153 IVIYVNSPGGS---------VTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQ 223 (305)
Q Consensus 153 I~L~INSPGGs---------V~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~ 223 (305)
|+||||||||+ +++|++|||+|++++++|+|+|.|+|||||++|+++|++|+|+++|||++|||||+++..
T Consensus 73 I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~ 152 (222)
T PRK12552 73 IYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR 152 (222)
T ss_pred EEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc
Confidence 99999999988 788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCc
Q 021957 224 GGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 224 G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~ 286 (305)
|++.|++++++|++++++.+.++|+++||++.|+|.++++||+||||+||++|||||+|+++.
T Consensus 153 G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 153 GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999874
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.2e-54 Score=392.12 Aligned_cols=180 Identities=54% Similarity=0.875 Sum_probs=175.5
Q ss_pred chhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe
Q 021957 107 QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 107 ~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
++++.|+|++|+++|||||+|+||+.+++.+++||++|+.+++.++|+||||||||+|++|++|||+|+++++||+|+|.
T Consensus 41 ~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~ 120 (221)
T PRK14514 41 NVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICT 120 (221)
T ss_pred CCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|+|||||++|+++|++|+|+|+|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++++++|+
T Consensus 121 G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~ 200 (221)
T PRK14514 121 GMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDY 200 (221)
T ss_pred EEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCcceecCCc
Q 021957 267 FMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~~ 286 (305)
||||+||++|||||+|++++
T Consensus 201 wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 201 WMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred cCCHHHHHHcCCccEEeecC
Confidence 99999999999999999753
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.7e-53 Score=382.06 Aligned_cols=178 Identities=52% Similarity=0.840 Sum_probs=174.5
Q ss_pred hhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEec
Q 021957 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 108 ~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G 187 (305)
+++.|+|++|+++|||||+++|++++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
+|||||++|+++|++|+|+|.|||++|||||+++..|++.|++++++|+++.++.+.++|+++||++.++|.+++++|+|
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ 174 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYF 174 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
|||+||++|||||+|+++
T Consensus 175 msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 175 MSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred cCHHHHHHcCCCcEEecc
Confidence 999999999999999976
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.5e-53 Score=382.21 Aligned_cols=195 Identities=38% Similarity=0.733 Sum_probs=182.0
Q ss_pred CCCCCCCCCcccccCCCCCCCCccchhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCC
Q 021957 83 DLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGG 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGG 162 (305)
++|+|.++|.. ++. -..+|.|+|++|+++|||||+++||+++++.++++|++|+.+++.++|+||||||||
T Consensus 2 ~~~~p~~~~~~-----~~~----~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG 72 (200)
T CHL00028 2 PIGVPKVPFRL-----PGE----EDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG 72 (200)
T ss_pred CCCCceeeeec-----CCC----CCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc
Confidence 35677766543 111 135678999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCC-ccCCCcchHHHHHHHHHHHH
Q 021957 163 SVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGG-AQGGQTDIDIQANEMLHHKA 241 (305)
Q Consensus 163 sV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g-~~G~a~di~~~akel~~~k~ 241 (305)
+|++|++|||+|++++.+|+|+|.|+|||||++|+++|++|+|+|+|||++|||||+++ ..|+++|+.+++++++++++
T Consensus 73 ~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~ 152 (200)
T CHL00028 73 SVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRE 152 (200)
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCc
Q 021957 242 NLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 242 ~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~ 286 (305)
.+.++|+++||++.++|++++++|+||||+||++|||||+|+++.
T Consensus 153 ~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 153 TITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 999999999999999999999999999999999999999999764
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.2e-52 Score=373.89 Aligned_cols=179 Identities=64% Similarity=0.962 Sum_probs=174.3
Q ss_pred hhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEec
Q 021957 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 108 ~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G 187 (305)
+++.|+|++|+++|||||+++||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 13 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 13 ERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred ccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
+|||||++|+++|++|+|+|.|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++++++|+|
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ 172 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF 172 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCcceecCCc
Q 021957 268 MSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~~ 286 (305)
|||+||++|||||+|+++.
T Consensus 173 msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 173 MSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCHHHHHHcCCCcEEeccC
Confidence 9999999999999999863
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=3.5e-48 Score=346.22 Aligned_cols=177 Identities=68% Similarity=1.060 Sum_probs=172.2
Q ss_pred hhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEec
Q 021957 108 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 108 ~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G 187 (305)
+++.|++++|+++|+||++|+|++.+++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
+|+|||++|+++|++++|+|.|||++|+|||.++..|++.|++++++++.++++.+.++|+++||++.+++++++++++|
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~ 173 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFF 173 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCcceecC
Q 021957 268 MSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~ 284 (305)
|||+||++|||||+|++
T Consensus 174 lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 174 MSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CcHHHHHHcCCccEEec
Confidence 99999999999999985
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2e-47 Score=343.39 Aligned_cols=198 Identities=61% Similarity=0.937 Sum_probs=183.5
Q ss_pred CCCCCCCCCcccccCCCCCCCCccchhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCC
Q 021957 83 DLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGG 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGG 162 (305)
++|+|.+|+..+ .... .+.|+|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||
T Consensus 2 ~~~~~~~p~~~~---~~~~-----~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG 73 (200)
T PRK00277 2 PIMMNLVPMVIE---QTSR-----GERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG 73 (200)
T ss_pred CCCCCCCceeec---cCCC-----CcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC
Confidence 567777776541 1111 35678999999999999999999999999999999999999899999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHH
Q 021957 163 SVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKAN 242 (305)
Q Consensus 163 sV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~ 242 (305)
++++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++++|++.||+++|+|||.++..|++.|++.+++++.++++.
T Consensus 74 ~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~ 153 (200)
T PRK00277 74 SVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKR 153 (200)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccc
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLK 288 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~ 288 (305)
+.++|+++||++.+++++++++++||||+||++|||||+|+++..+
T Consensus 154 ~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 154 LNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred HHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 9999999999999999999999999999999999999999987544
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=344.43 Aligned_cols=180 Identities=38% Similarity=0.700 Sum_probs=173.8
Q ss_pred cHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccch
Q 021957 112 SVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 112 di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
+++++|+++|+|||+|+|++++++.|+++|++|+..++.++|+||||||||+|++|++|||+|++++.||+|+|.|.|||
T Consensus 15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 68999999999999999999999999999999998788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
||++|+++|++|+|++.||+++|+|||.++..|++.|++.++++++++++.+.++|+++||++.+++++++++|+||||+
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~ 174 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSS 174 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceecCCccccCC
Q 021957 272 EAKDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 272 EA~eyGLID~Ii~~~~~~L~ 291 (305)
||++|||||+|+++..+.++
T Consensus 175 EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 175 SAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred HHHHcCCccEeecCcHHhHh
Confidence 99999999999998766554
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.1e-46 Score=329.43 Aligned_cols=179 Identities=43% Similarity=0.709 Sum_probs=170.1
Q ss_pred chhhccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe
Q 021957 107 QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 107 ~~~~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
+++|+|+|++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||++.+|++|||+|+.++.+|+|+|.
T Consensus 3 ~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~ 82 (182)
T PF00574_consen 3 GEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVL 82 (182)
T ss_dssp EEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEe
Confidence 35899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|.|+|+|++|+++|++++|++.|+|++|+|+|..+..|+..++.++++++.++++.+.++|+++||+++++|++++++++
T Consensus 83 G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~ 162 (182)
T PF00574_consen 83 GLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDT 162 (182)
T ss_dssp EEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTE
T ss_pred CccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCc
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCcceecCC
Q 021957 267 FMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~ 285 (305)
||+|+||++|||||+|+++
T Consensus 163 ~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 163 WLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEHHHHHHHTSSSEEESS
T ss_pred cccHHHHHHcCCCCEeccC
Confidence 9999999999999999976
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.9e-45 Score=332.32 Aligned_cols=179 Identities=56% Similarity=0.904 Sum_probs=172.6
Q ss_pred hccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021957 110 FQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLA 189 (305)
Q Consensus 110 ~~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~A 189 (305)
+.|++++|+++|+|||+|+|++.+++.|+++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|.|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 47999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEeccC--CCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQPL--GGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP~--~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
+|||++|+++|++|+|+|.|||++|+|||. ++..|++.|++.+++++.++++.+.++|+++||++.+++++++++++|
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999998 567899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCcceecCCccc
Q 021957 268 MSPKEAKDYGLIDGVIMNPLK 288 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~~~~ 288 (305)
|||+||++|||||+|+++..+
T Consensus 185 lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 185 LTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred ccHHHHHHcCCccEEcCchhh
Confidence 999999999999999987643
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=3.4e-44 Score=314.32 Aligned_cols=171 Identities=65% Similarity=1.053 Sum_probs=166.7
Q ss_pred cHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccch
Q 021957 112 SVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 112 di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
|++++|+++|+||++|+|++++++.++++|++++.+++.++|+|+||||||++++|++|||+|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|++|+++|++|+|++.||+++|+|+|.++..|+..|+..+++++.++++.+.++|+++||++.+++.+++++++|||++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccee
Q 021957 272 EAKDYGLIDGV 282 (305)
Q Consensus 272 EA~eyGLID~I 282 (305)
||++|||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.6e-43 Score=306.89 Aligned_cols=162 Identities=51% Similarity=0.793 Sum_probs=158.6
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcC
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAG 200 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG 200 (305)
|+|||.|+|++.+++.|+++|++++.+++.++|+|+||||||+++++++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcc
Q 021957 201 AKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLID 280 (305)
Q Consensus 201 ~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID 280 (305)
++|+|++.|++++|+|||.++..|+..|++++++++.+.++.+.++|+++||++.++|++++++++||+|+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 021957 281 GV 282 (305)
Q Consensus 281 ~I 282 (305)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=4.1e-33 Score=245.78 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=143.6
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe---cccchHHHHHHh
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV---GLAASMGAFLLS 198 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~---G~AASaga~Ila 198 (305)
+|.+.|.|++.+.+.+.+.|...+. ++.++|+|+||||||+++++++||++|+..++||+|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 6889999999999988888877664 578999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCcEEecCCceEEEeccCCCccCC-----CcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHH
Q 021957 199 AGAKGKRYSLPNSRIMIHQPLGGAQGG-----QTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEA 273 (305)
Q Consensus 199 aG~kgkR~a~PnS~imiHqP~~g~~G~-----a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA 273 (305)
+|++ |+|.|++++|.|+|..+ .|+ ..|.+++..++.++++ ++++||++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9999 99999999999999754 355 4566666665555444 799999999999999999999999999
Q ss_pred HHcCCcceecCCccccCC
Q 021957 274 KDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 274 ~eyGLID~Ii~~~~~~L~ 291 (305)
++||+||.|..+..+.|+
T Consensus 154 ~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 154 LKYGVIEVVARDINELLK 171 (172)
T ss_pred HHcCCceeeeCCHHHHhh
Confidence 999999999999888764
No 16
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=4.1e-33 Score=240.35 Aligned_cols=156 Identities=31% Similarity=0.417 Sum_probs=148.2
Q ss_pred EEEEcceeCH---hHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHh
Q 021957 122 IIRCGGAVDD---DMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLS 198 (305)
Q Consensus 122 II~Lgg~Idd---~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~Ila 198 (305)
-|+|.|+|++ .+++.+.+.|..++.+ ++|.|+||||||++.++++|++.|+.+++||+|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4899999999 6899999999877654 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 021957 199 AGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGL 278 (305)
Q Consensus 199 aG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGL 278 (305)
+|+. |++.|++++|+|+|.++..|+..+++...++++++++.+.+.|++++|++.+++++++.+++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999988888888899899999999999999999999999999999999999999999999999
Q ss_pred ccee
Q 021957 279 IDGV 282 (305)
Q Consensus 279 ID~I 282 (305)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=1.5e-30 Score=223.60 Aligned_cols=159 Identities=33% Similarity=0.532 Sum_probs=147.5
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCC
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGA 201 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~ 201 (305)
+|+|+|+|++.+.+.+++.|..++.+++.++|+|++|||||++.++.+|+++|+.+++||++++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCceEEEeccCCCccCCC--cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCc
Q 021957 202 KGKRYSLPNSRIMIHQPLGGAQGGQ--TDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLI 279 (305)
Q Consensus 202 kgkR~a~PnS~imiHqP~~g~~G~a--~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLI 279 (305)
+ |++.|++.+++|+|..+..+.. .+.+...+.+..+++.+.+.++++||++.+++++++.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 8 9999999999999986655544 56666667777788999999999999999999999999999999999999999
Q ss_pred cee
Q 021957 280 DGV 282 (305)
Q Consensus 280 D~I 282 (305)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=1.3e-27 Score=212.03 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=141.6
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe---cccchHHHHHHh
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV---GLAASMGAFLLS 198 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~---G~AASaga~Ila 198 (305)
+|.|.|.|++..++.+.++|..++.+ +.+.|.|+||||||+++++.+|++.|+.+++||+++|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68899999999999999999988854 58999999999999999999999999999999999998 999999999999
Q ss_pred cCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 021957 199 AGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGL 278 (305)
Q Consensus 199 aG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGL 278 (305)
+||. |++.|++++++|+|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++..+.||+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9999 9999999999999975433333344445555554544 466678999999999999998899999999999999
Q ss_pred cceecCCccccC
Q 021957 279 IDGVIMNPLKAL 290 (305)
Q Consensus 279 ID~Ii~~~~~~L 290 (305)
||+|+++..+.+
T Consensus 159 vd~v~~~~~~~~ 170 (187)
T cd07020 159 IDLIAADLNELL 170 (187)
T ss_pred cccccCCHHHHH
Confidence 999997753433
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.94 E-value=2.8e-26 Score=203.16 Aligned_cols=162 Identities=22% Similarity=0.302 Sum_probs=138.7
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCC
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGA 201 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~ 201 (305)
+|.+.|+|++..++.+.+.|..++.+ +.+.|+|+||||||.++++..|++.|+.++.||++++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 68899999999999888888877765 48999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC-------------ccc
Q 021957 202 KGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD-------------YFM 268 (305)
Q Consensus 202 kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd-------------~~l 268 (305)
+ ++|.|+++++.|+|.....+...+ .|....++..+ +-+++++|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~~~~-~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWRAKM-RAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh----HHHHHHHHHHH-HHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 8 999999999999997654333222 12222233334 447999999999999999998 599
Q ss_pred CHHHHHHcCCcceecCCccccCC
Q 021957 269 SPKEAKDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~~~~L~ 291 (305)
|++||+++|++|.|..+..+.|+
T Consensus 155 ta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 155 TADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CHHHHHHhCCeEEEECCHHHHhh
Confidence 99999999999999999877764
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.86 E-value=1.3e-20 Score=169.82 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=130.1
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC--CCeEEEEecccchHHHHHHhc
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR--PDVSTVCVGLAASMGAFLLSA 199 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k--~pV~Tvv~G~AASaga~Ilaa 199 (305)
+|.+.|+|+ .+.+.+.+.|..+..++..+.|.|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 689999998 55677888898888888899999999999999999999999999998 899999999999999999999
Q ss_pred CCCCcEEecCCceEEEeccCC------------C------ccCCCc-------chHH-----HHHHHHHHHHHHHHHHHH
Q 021957 200 GAKGKRYSLPNSRIMIHQPLG------------G------AQGGQT-------DIDI-----QANEMLHHKANLNGYLAY 249 (305)
Q Consensus 200 G~kgkR~a~PnS~imiHqP~~------------g------~~G~a~-------di~~-----~akel~~~k~~i~~~la~ 249 (305)
|++ |+|.|++.++...+.. | ..|+.. ++.. ..+.+..+.+.|.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 9999999875433211 0 122221 1222 223334566778888999
Q ss_pred HcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 250 HTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 250 ~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
.+|++.+++++.+++..| +++||+++||||+|..
T Consensus 161 ~R~~~~~~~~~~~~~~~~-~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 161 GRNLPVEDVKKFADGRVF-TGRQALKLRLVDKLGT 194 (207)
T ss_pred cCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCC
Confidence 999999999998888765 9999999999999974
No 21
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.86 E-value=7.1e-21 Score=182.21 Aligned_cols=161 Identities=27% Similarity=0.279 Sum_probs=130.6
Q ss_pred EEEEcceeCHhH-------HHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCC--CeEEEEecccchH
Q 021957 122 IIRCGGAVDDDM-------ANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRP--DVSTVCVGLAASM 192 (305)
Q Consensus 122 II~Lgg~Idd~~-------a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~--pV~Tvv~G~AASa 192 (305)
+|.+.|.|.... .+.+.+.|..+..+++.++|.|+||||||++.++..||+.|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 578889988543 5677777888888889999999999999999999999999999986 6999999999999
Q ss_pred HHHHHhcCCCCcEEecCCceEEEeccCC------------C------ccCCCcch------------HHHHHHHHHHHHH
Q 021957 193 GAFLLSAGAKGKRYSLPNSRIMIHQPLG------------G------AQGGQTDI------------DIQANEMLHHKAN 242 (305)
Q Consensus 193 ga~IlaaG~kgkR~a~PnS~imiHqP~~------------g------~~G~a~di------------~~~akel~~~k~~ 242 (305)
||||+++|++ ++|.|+|.++-=.+.. | ..|...++ +...+++++.++.
T Consensus 143 GY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999865321110 0 12222222 2233455556788
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
|.+.+++.++.+.+++.+..++..| ++++|++.||||++++.
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~g~v~-~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLATGRVW-TGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhcccee-cHHHhhhcCCchhcCCH
Confidence 9999999999999998888888777 89999999999999864
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.85 E-value=3.9e-20 Score=166.19 Aligned_cols=160 Identities=23% Similarity=0.266 Sum_probs=130.7
Q ss_pred EEEEcceeC---HhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC---CCeEEEEecccchHHHH
Q 021957 122 IIRCGGAVD---DDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR---PDVSTVCVGLAASMGAF 195 (305)
Q Consensus 122 II~Lgg~Id---d~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k---~pV~Tvv~G~AASaga~ 195 (305)
+|++.|+|+ +.+...+.++|..++.++..+.|.|++|||||++..+..|+++|+.++ +||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 689999999 778899999999999888899999999999999999999999987764 69999999999999999
Q ss_pred HHhcCCCCcEEecCCceEEEeccC------------------CCccCCC-------c-----chHHHHHHHHHHHHHHHH
Q 021957 196 LLSAGAKGKRYSLPNSRIMIHQPL------------------GGAQGGQ-------T-----DIDIQANEMLHHKANLNG 245 (305)
Q Consensus 196 IlaaG~kgkR~a~PnS~imiHqP~------------------~g~~G~a-------~-----di~~~akel~~~k~~i~~ 245 (305)
|+++|++ |++.|++.++..... ....|.. . +.+.....+..+.+.|.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 999999987432210 0012211 1 122223344446677888
Q ss_pred HHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 246 YLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 246 ~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
.+++.+|++.+++++..+...| +++||+++||||+|..
T Consensus 162 ~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~ 199 (208)
T cd07023 162 VVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG 199 (208)
T ss_pred HHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC
Confidence 8899999999999998888776 8999999999999974
No 23
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.83 E-value=1.7e-19 Score=158.19 Aligned_cols=143 Identities=22% Similarity=0.147 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc---CCCeEEEEecccchHHHHHHhcCCCCcEEecC
Q 021957 133 MANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHI---RPDVSTVCVGLAASMGAFLLSAGAKGKRYSLP 209 (305)
Q Consensus 133 ~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~---k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~P 209 (305)
+.+.+.+.|..++.++..+.|+|.+|||||++.....+++.++.+ ++||++++.|.|+|+|++|+++|+. |+|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 356788889888888889999999999999999888888766654 6899999999999999999999999 99999
Q ss_pred CceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 210 NSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 210 nS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
++.+++|....+ .+.....+..+.+.+.+.+++.+|++.+++.+++....+|+++||+++||||+|+.
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~ 168 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS 168 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC
Confidence 999999876543 11223445667788888999999999999999998888899999999999999986
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.83 E-value=1e-19 Score=186.82 Aligned_cols=166 Identities=20% Similarity=0.206 Sum_probs=133.3
Q ss_pred EEEEcceeCHh-------HHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC---CCeEEEEecccch
Q 021957 122 IIRCGGAVDDD-------MANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR---PDVSTVCVGLAAS 191 (305)
Q Consensus 122 II~Lgg~Idd~-------~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k---~pV~Tvv~G~AAS 191 (305)
+|++.|+|.+. ..+.+.+.|..+..++..++|+|+||||||++.++..|+++|+..+ +||++++.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 79999999752 2466778888888888889999999999999999999999998654 7899999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceE------EEeccC-------C-----CccCC-----------CcchHHHHHHHHHHHHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRI------MIHQPL-------G-----GAQGG-----------QTDIDIQANEMLHHKAN 242 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~i------miHqP~-------~-----g~~G~-----------a~di~~~akel~~~k~~ 242 (305)
+|++|+++|++ ++|.|++.+ +.+... + ...|. ..+.+.....+.+.++.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 999999986 333210 0 01121 12334445566667888
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccCC
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L~ 291 (305)
|.+.+++.+|++.+++++++++..| +++||+++||||+|.. ..++++
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~-~~~Ai~ 516 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG-LDEAVA 516 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC-HHHHHH
Confidence 8889999999999999999998777 9999999999999974 344443
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.81 E-value=6.3e-19 Score=159.40 Aligned_cols=159 Identities=22% Similarity=0.228 Sum_probs=126.0
Q ss_pred EEEEcceeCH-----------hHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC--CCeEEEEecc
Q 021957 122 IIRCGGAVDD-----------DMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR--PDVSTVCVGL 188 (305)
Q Consensus 122 II~Lgg~Idd-----------~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k--~pV~Tvv~G~ 188 (305)
+|.+.|+|.+ .+...+++.|..++.++..+.|+|.+|||||++.....|+++|+.++ +||++++.|.
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4566666665 34678899999999888899999999999999999999999999998 8999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCC------------C------ccCCC-------cchHHH-----HHHHHH
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLG------------G------AQGGQ-------TDIDIQ-----ANEMLH 238 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~------------g------~~G~a-------~di~~~-----akel~~ 238 (305)
|+|+|++|+++|++ +++.|++.++...... | ..|.. .++... .+.+..
T Consensus 84 a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~ 161 (214)
T cd07022 84 AASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDA 161 (214)
T ss_pred hhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998 9999999975432110 0 12222 122222 222334
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 239 HKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 239 ~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
+.+.|.+.+++.+|++.+++++.+ + ..|+++||+++||||+|..
T Consensus 162 ~~~~f~~~V~~~R~~~~~~~~~~~-~-~~~~~~~Al~~gLvD~i~~ 205 (214)
T cd07022 162 LYAMFVAAVARNRGLSAAAVRATE-G-GVFRGQEAVAAGLADAVGT 205 (214)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhh-c-CeeeHHHHHHcCCCcccCC
Confidence 567788889999999999999888 4 4469999999999999974
No 26
>PRK10949 protease 4; Provisional
Probab=99.80 E-value=1.2e-18 Score=179.77 Aligned_cols=166 Identities=23% Similarity=0.224 Sum_probs=130.2
Q ss_pred EEEEcceeCHh-------HHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC---CCeEEEEecccch
Q 021957 122 IIRCGGAVDDD-------MANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR---PDVSTVCVGLAAS 191 (305)
Q Consensus 122 II~Lgg~Idd~-------~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k---~pV~Tvv~G~AAS 191 (305)
||++.|.|.+. ..+.+.++|..+..++..|+|+|+||||||++.++..|++.|+..+ +||++++.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 69999999763 2567888999999899999999999999999999999999997664 6999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEE------eccC------CC------ccCCCcc-----------hHHHHHHHHHHHHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMI------HQPL------GG------AQGGQTD-----------IDIQANEMLHHKAN 242 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imi------HqP~------~g------~~G~a~d-----------i~~~akel~~~k~~ 242 (305)
+||+|+++|++ +++.|++.++. |.-. .| ..|...+ .+.....++..++.
T Consensus 410 ggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~ 487 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred HHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 99999887542 2110 01 0111111 12223344456788
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccCC
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L~ 291 (305)
|.+.+++.+|++.+++++..++..| |+++|+++||||+++. ..++++
T Consensus 488 F~~~Va~~R~~~~~~v~~ia~Grv~-tg~~A~~~GLVD~lG~-~~~ai~ 534 (618)
T PRK10949 488 FITLVADSRHKTPEQIDKIAQGHVW-TGQDAKANGLVDSLGD-FDDAVA 534 (618)
T ss_pred HHHHHHhhCCCCHHHHHHHhcCCcc-cHHHHHHcCCCccCCC-HHHHHH
Confidence 9999999999999999998887665 9999999999999975 334443
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.79 E-value=3.5e-18 Score=154.36 Aligned_cols=160 Identities=22% Similarity=0.161 Sum_probs=126.5
Q ss_pred EEEEcceeCHhH-------HHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHh---cCCCeEEEEecccch
Q 021957 122 IIRCGGAVDDDM-------ANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH---IRPDVSTVCVGLAAS 191 (305)
Q Consensus 122 II~Lgg~Idd~~-------a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~---~k~pV~Tvv~G~AAS 191 (305)
||.+.|+|.+.. ...+.+.|..++.++..+.|+|.+|||||++.+...|+++|+. .++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 688888887643 3678888999988888899999999999999999999887654 567999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccC------------CC------cc-CC-----Ccch-----HHHHHHHHHHHHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPL------------GG------AQ-GG-----QTDI-----DIQANEMLHHKAN 242 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~------------~g------~~-G~-----a~di-----~~~akel~~~k~~ 242 (305)
+|++|+++|++ +++.|+++++..... .| .. |. ..++ +.....+..+++.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999987543321 01 01 21 1111 1223345557788
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
|.+.+++.++++++++++..++ .+++++||+++||||+|..
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~~-~~~~~~~A~~~GLvD~i~~ 202 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQG-HVWTGQDAKANGLVDSLGD 202 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcCC-cEEeHHHHHHcCCcccCCC
Confidence 8899999999999999987765 5679999999999999875
No 28
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=164.53 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=139.6
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEe---cccchHHHHHH
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCV---GLAASMGAFLL 197 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~---G~AASaga~Il 197 (305)
.++.++|+|++.+++.+.+.|...+++ +...++|.+|+|||-+++++.|.+.|..++.||+.++. ++|+|+|+||+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 478899999999999999998876654 47899999999999999999999999999999888875 47999999999
Q ss_pred hcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcC
Q 021957 198 SAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYG 277 (305)
Q Consensus 198 aaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyG 277 (305)
+++|. .+|.|++.++-.+|..+. |...+.+. -+..+.+.+ +-+++..|++.+..+++.+++.-++++||.++|
T Consensus 108 m~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~ay~-~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAVAYI-RSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HhcCh--hhhCCCCcccccceecCC-CCCccchh---hHHHHHHHH-HHHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 99999 999999999999996543 32222211 122222333 335899999999999999999999999999999
Q ss_pred CcceecCCccccCCCCccc
Q 021957 278 LIDGVIMNPLKALQPLPAA 296 (305)
Q Consensus 278 LID~Ii~~~~~~L~~~~~~ 296 (305)
+||-|..+..|.|+-+.-.
T Consensus 181 vid~iA~~~~ell~~~~g~ 199 (436)
T COG1030 181 VIDLIARDLNELLKKLDGR 199 (436)
T ss_pred ccccccCCHHHHHHHccCC
Confidence 9999999988887765433
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.73 E-value=8.6e-17 Score=154.79 Aligned_cols=159 Identities=13% Similarity=0.199 Sum_probs=110.5
Q ss_pred EEEEcceeCHhHHHHHHHHHHHh-hhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHh---cCCCeEEEEecccchHHHHHH
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYL-DAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH---IRPDVSTVCVGLAASMGAFLL 197 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L-~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~---~k~pV~Tvv~G~AASaga~Il 197 (305)
+|.+.|.|+......+.+.+..+ +...+.+.|+|+||||||++.++..++..|+. .+.||++++.++|||+||||+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 57889999976554444443332 12223378999999999999886666665544 457999999999999999999
Q ss_pred hcCCCCcEEecCCceEEEeccCC------------C------ccCCCcc------------hHHHHHHHHHHHHHHHHHH
Q 021957 198 SAGAKGKRYSLPNSRIMIHQPLG------------G------AQGGQTD------------IDIQANEMLHHKANLNGYL 247 (305)
Q Consensus 198 aaG~kgkR~a~PnS~imiHqP~~------------g------~~G~a~d------------i~~~akel~~~k~~i~~~l 247 (305)
|+|++ +++.|.+.++...... | ..|...+ .+....++...++.|.+.+
T Consensus 174 saAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~V 251 (330)
T PRK11778 174 CVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFV 251 (330)
T ss_pred HhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999876533210 0 1222211 1223344555677888888
Q ss_pred HHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 248 AYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 248 a~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+++++ ...+++..++..| +++||+++||||+|...
T Consensus 252 a~~R~--~l~~~~va~G~v~-~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 252 QRYRP--QLDIDKVATGEHW-YGQQALELGLVDEIQTS 286 (330)
T ss_pred HhcCC--cCCHHHHHhCCCc-CHHHHHHCCCCCcCCCH
Confidence 88775 2234445566565 89999999999999853
No 30
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.72 E-value=8.9e-17 Score=146.27 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=123.9
Q ss_pred eeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc---CCCeEEEEecccchHHHHHHhcCCCCc
Q 021957 128 AVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHI---RPDVSTVCVGLAASMGAFLLSAGAKGK 204 (305)
Q Consensus 128 ~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~---k~pV~Tvv~G~AASaga~IlaaG~kgk 204 (305)
..+......+++.|..+..++..+.|+|.+|||||.+.+...|++.|+.+ ++||++++.| |+|+|++|+++|++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~-- 101 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE-- 101 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE--
Confidence 33445567889999999988889999999999999999999999999765 4799999887 99999999999998
Q ss_pred EEecCCceEEEeccCCC------------------ccCCCc---------chHHHHH-----HHHHHHHHHHHHHHHHcC
Q 021957 205 RYSLPNSRIMIHQPLGG------------------AQGGQT---------DIDIQAN-----EMLHHKANLNGYLAYHTG 252 (305)
Q Consensus 205 R~a~PnS~imiHqP~~g------------------~~G~a~---------di~~~ak-----el~~~k~~i~~~la~~TG 252 (305)
++|.|++.+++...... ..|..+ ++..+.+ .+..+.+.|.+.+++.+|
T Consensus 102 I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~ 181 (222)
T cd07018 102 IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRG 181 (222)
T ss_pred EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999988643211 012211 1222222 233366778888999999
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccC
Q 021957 253 QSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKAL 290 (305)
Q Consensus 253 ~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L 290 (305)
++.+++++..++..| ++++|++.||||+|. +..+++
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~A~~~GLvD~i~-~~~e~~ 217 (222)
T cd07018 182 LSPDALEALIDLGGD-SAEEALEAGLVDGLA-YRDELE 217 (222)
T ss_pred CCHHHHHHHHHcCCc-HHHHHHHCCCCCcCC-cHHHHH
Confidence 999999998886655 999999999999998 433443
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.57 E-value=4.9e-14 Score=132.05 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=108.6
Q ss_pred cceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcE
Q 021957 126 GGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKR 205 (305)
Q Consensus 126 gg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR 205 (305)
...|+.+.++.+.+.+.. .++.++|.|.||||||.+.++..|.+.|+....+|++++-..|.|+|++|+++|++ +
T Consensus 69 ~~~I~i~dse~v~raI~~---~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--I 143 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIRE---APKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--I 143 (285)
T ss_pred ceeEcHhhHHHHHHHHHh---cCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--E
Confidence 345787788888777644 34567899999999999999999999999999999999999999999999999999 9
Q ss_pred EecCCceEEEeccCCCccC--------------CCcch-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh---h-
Q 021957 206 YSLPNSRIMIHQPLGGAQG--------------GQTDI-----DIQANEMLHHKANLNGYLAYHTGQSLEKINQD---T- 262 (305)
Q Consensus 206 ~a~PnS~imiHqP~~g~~G--------------~a~di-----~~~akel~~~k~~i~~~la~~TG~s~e~I~~~---~- 262 (305)
+|.|+|.++--.|..+... ..+|. ....+.+.++++...+++.. +.+.++.++. +
T Consensus 144 vM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L~ 221 (285)
T PF01972_consen 144 VMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKLS 221 (285)
T ss_pred EECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhc
Confidence 9999999998777543111 11111 01123344445555555544 3455555443 2
Q ss_pred ----cCCcccCHHHHHHcCCc
Q 021957 263 ----DRDYFMSPKEAKDYGLI 279 (305)
Q Consensus 263 ----~rd~~lta~EA~eyGLI 279 (305)
..|+-+|.+||+++||=
T Consensus 222 ~g~~tHdypi~~eea~~lGL~ 242 (285)
T PF01972_consen 222 SGKWTHDYPITVEEAKELGLP 242 (285)
T ss_pred CCCCCCCCCCCHHHHHHcCCC
Confidence 45777999999999983
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.34 E-value=1.4e-11 Score=127.06 Aligned_cols=150 Identities=12% Similarity=0.025 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhcC---CCeEEEEecccchHHHHHHhcCCCCcEEe
Q 021957 132 DMANIIVAQLLYLDAIDPHKDIVIYVNS-PGGSVTAGMAIFDTMKHIR---PDVSTVCVGLAASMGAFLLSAGAKGKRYS 207 (305)
Q Consensus 132 ~~a~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~ag~aIyd~I~~~k---~pV~Tvv~G~AASaga~IlaaG~kgkR~a 207 (305)
.....++.+|..+..++..+.|+|.+|+ |||.+....+|+++|+..+ +||+++..+ ++|.+|+|++++++ +++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EEE
Confidence 3456789999999999999999999996 6788888999999998775 689998765 57999999999999 999
Q ss_pred cCCceEEEeccCC------------C------ccCCC---------cchHHHHHH-----HHHHHHHHHHHHHHHcCCCH
Q 021957 208 LPNSRIMIHQPLG------------G------AQGGQ---------TDIDIQANE-----MLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 208 ~PnS~imiHqP~~------------g------~~G~a---------~di~~~ake-----l~~~k~~i~~~la~~TG~s~ 255 (305)
.|.+.++++-... | ..|.. .++..+.+| +..+.+.+.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 9999987754311 0 01211 233333333 33466778888999999999
Q ss_pred HHHHhhhcCCcc-------cCHHHHHHcCCcceecC
Q 021957 256 EKINQDTDRDYF-------MSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 256 e~I~~~~~rd~~-------lta~EA~eyGLID~Ii~ 284 (305)
+++.+..++-.| .++++|++.||||+|..
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~ 268 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS 268 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC
Confidence 999988876554 38999999999999985
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.26 E-value=2.9e-11 Score=104.33 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=78.6
Q ss_pred HHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCC------------C------ccCCC-------cc
Q 021957 174 MKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLG------------G------AQGGQ-------TD 228 (305)
Q Consensus 174 I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~------------g------~~G~a-------~d 228 (305)
.+..++||++++.++|+|+|++|+++|++ +++.|.+.++...... | ..|+. .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 35677899999999999999999999998 9999999986543210 1 12222 22
Q ss_pred hHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccCC
Q 021957 229 IDIQ-----ANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQ 291 (305)
Q Consensus 229 i~~~-----akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L~ 291 (305)
+... .+.+..+.+.|.+.+++.+|++.++++++.++ ..|+++||+++||||+|. +..++++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~-~~~~~~~ 145 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIG-TFDEAIA 145 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEET-SHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcC-CHHHHHH
Confidence 2222 23334456778888999999999999998888 555999999999999997 4445444
No 34
>PRK10949 protease 4; Provisional
Probab=99.22 E-value=1.2e-10 Score=120.72 Aligned_cols=151 Identities=17% Similarity=0.062 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHH-HHHHHHHHHhcC---CCeEEEEecccchHHHHHHhcCCCCcEEe
Q 021957 132 DMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTA-GMAIFDTMKHIR---PDVSTVCVGLAASMGAFLLSAGAKGKRYS 207 (305)
Q Consensus 132 ~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-g~aIyd~I~~~k---~pV~Tvv~G~AASaga~IlaaG~kgkR~a 207 (305)
-....+++.|..+..++..+.|+|++|+|||...+ ...|+++|+..+ +||+++ ...+++.+|+|++++++ +|+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~l 171 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IYL 171 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EEE
Confidence 34567889999999999999999999999887654 478999998775 688886 56668999999999999 999
Q ss_pred cCCceEEEeccCCC------------------ccCCC---------cchHHHHHHHH-----HHHHHHHHHHHHHcCCCH
Q 021957 208 LPNSRIMIHQPLGG------------------AQGGQ---------TDIDIQANEML-----HHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 208 ~PnS~imiHqP~~g------------------~~G~a---------~di~~~akel~-----~~k~~i~~~la~~TG~s~ 255 (305)
.|.+.++++-.... ..|.. .++..+.+|.. .+.+.+.+.+++.++++.
T Consensus 172 ~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~ 251 (618)
T PRK10949 172 SPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITP 251 (618)
T ss_pred CCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999887654211 01211 23333344333 356778888899999999
Q ss_pred HHHHhhhcC----C---cccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDR----D---YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~r----d---~~lta~EA~eyGLID~Ii~~ 285 (305)
+++....++ - --+++++|++.||||+|...
T Consensus 252 ~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~ 288 (618)
T PRK10949 252 QQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASS 288 (618)
T ss_pred HHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCH
Confidence 998643322 1 12589999999999999853
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.87 E-value=5.6e-08 Score=85.15 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=96.6
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHH-----------------HHHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVT-----------------AGMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~-----------------ag~aIyd~I~~~k~pV~Tvv~G 187 (305)
++..+.+.+.+.+..++.++..+.|+|.-+ |.|+++. ....++..|..++.||.+.+.|
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 577888889999988887666776666655 5555543 2355666777788999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|.++|+.+++++|. |++.+++++.+.....|..- +... ... +.+..| .....+++-....
T Consensus 103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p---~~g~-~~~-----------l~~~~g--~~~a~~~~l~g~~ 163 (195)
T cd06558 103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVP---GGGG-TQR-----------LPRLVG--PARARELLLTGRR 163 (195)
T ss_pred eeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCC---CCcH-HHH-----------HHHHhC--HHHHHHHHHcCCc
Confidence 999999999999999 99999999988666443220 1000 011 111122 2233333433456
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
++++||++.||+|+++..
T Consensus 164 ~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 164 ISAEEALELGLVDEVVPD 181 (195)
T ss_pred cCHHHHHHcCCCCeecCh
Confidence 799999999999999975
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.73 E-value=1.4e-07 Score=85.69 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=109.8
Q ss_pred hhccCcE--EEEcceeCHhHHHHHHHHHHHhhhcCCCCCEE-EEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchH
Q 021957 116 QLFQHRI--IRCGGAVDDDMANIIVAQLLYLDAIDPHKDIV-IYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASM 192 (305)
Q Consensus 116 ~L~~~RI--I~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~-L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASa 192 (305)
+.+..|. |.+.+++-+.-+......+. ...+...++ +.+|||||++..++++-..|++.+-++..-...+|+|+
T Consensus 70 ~~~dgr~l~VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~Casa 146 (245)
T COG3904 70 KTLDGRQLPVVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASA 146 (245)
T ss_pred hhccCceeeEEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhcc
Confidence 3445554 45666655443333333332 223344444 77999999999999999999999999888888999999
Q ss_pred HHHHHhcCCCCcEEecCCceEEEeccCCCccC-CCcchHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHhhh----cCCc
Q 021957 193 GAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQG-GQTDIDIQANEMLH-HKANLNGYLAYHTGQSLEKINQDT----DRDY 266 (305)
Q Consensus 193 ga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G-~a~di~~~akel~~-~k~~i~~~la~~TG~s~e~I~~~~----~rd~ 266 (305)
+.+++++|.. |++.+.+.+++||+.....- .... .+++.... ...++..| -...|....-+..+. ++-+
T Consensus 147 Cpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~r~~~--~~a~Sanq~~tar~a~y-lrEMgigpgLlq~ml~tpp~dir 221 (245)
T COG3904 147 CPLMFAGGVR--RVVEDFAYIGVHQITTTGRRERIVN--GKAKSANQKVTARLAAY-LREMGIGPGLLQMMLATPPSDIR 221 (245)
T ss_pred chhhhhccee--eeecccceeeeeeccccCCccccCc--HhhhhhhhhhHHHHHHH-HHHcCCCHHHHHHHhcCChHhhh
Confidence 9999999998 99999999999999754211 1112 12333322 22444444 466888887766544 4458
Q ss_pred ccCHHHHHHcCCcce
Q 021957 267 FMSPKEAKDYGLIDG 281 (305)
Q Consensus 267 ~lta~EA~eyGLID~ 281 (305)
+++.+|..+|.|+.+
T Consensus 222 ~l~~kem~~~~L~t~ 236 (245)
T COG3904 222 QLGLKEMTAMKLVTS 236 (245)
T ss_pred hhhHHHHhhhccccc
Confidence 899999999999865
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.60 E-value=1.8e-06 Score=78.87 Aligned_cols=144 Identities=20% Similarity=0.191 Sum_probs=94.6
Q ss_pred EEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH---------------HHHHHHHHhcCC
Q 021957 123 IRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG---------------MAIFDTMKHIRP 179 (305)
Q Consensus 123 I~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag---------------~aIyd~I~~~k~ 179 (305)
|.++.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..++..|..+++
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k 100 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPK 100 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCC
Confidence 555555 777888888888888887766666655311 234443321 235667788889
Q ss_pred CeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021957 180 DVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKIN 259 (305)
Q Consensus 180 pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~ 259 (305)
||++.+.|.|..+|..|+++||. |++.++++|.+-....|.. .+..- ...+ .+..| .....
T Consensus 101 PvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~-~~~l-----------~~~ig--~~~a~ 161 (222)
T PRK05869 101 PTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLA---PSGDG-MARL-----------TRAAG--PSRAK 161 (222)
T ss_pred CEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCC---CCccH-HHHH-----------HHHhC--HHHHH
Confidence 99999999999999999999999 9999999887644332211 11100 0001 12223 22233
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCC
Q 021957 260 QDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 260 ~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+++-...+++++||+++||+|+|+..
T Consensus 162 ~l~ltg~~~~a~eA~~~Glv~~vv~~ 187 (222)
T PRK05869 162 ELVFSGRFFDAEEALALGLIDEMVAP 187 (222)
T ss_pred HHHHcCCCcCHHHHHHCCCCCEeeCc
Confidence 33333357899999999999999853
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=1.4e-06 Score=80.55 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=94.4
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEE----EeCCCCcHHH--------------HHHHHHHHHhcCC
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIY----VNSPGGSVTA--------------GMAIFDTMKHIRP 179 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~a--------------g~aIyd~I~~~k~ 179 (305)
|.++-+ ++.++.+.+.+.+..++.++..+.|+|. .=|.|+++.. ...+++.|..++.
T Consensus 18 i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 97 (259)
T PRK06688 18 ITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPK 97 (259)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCC
Confidence 455554 7888888888888888876666666654 1244454422 2345667778889
Q ss_pred CeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021957 180 DVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKIN 259 (305)
Q Consensus 180 pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~ 259 (305)
||++.+.|.|.++|..|+++||. |++.++++|.+.....|... ...... . + .+..|. ....
T Consensus 98 p~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p---~~g~~~--~------l----~~~~G~--~~a~ 158 (259)
T PRK06688 98 PVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCP---DAGGSA--L------L----PRLIGR--ARAA 158 (259)
T ss_pred CEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCC---Ccchhh--H------H----HHHhhH--HHHH
Confidence 99999999999999999999999 99999999987554333211 110000 0 0 111121 1222
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCC
Q 021957 260 QDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 260 ~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+++-....++++||+++||||+|+..
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPA 184 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCH
Confidence 22222245799999999999999864
No 39
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=1.9e-06 Score=80.90 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=91.0
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-------------------MAIFDTMKHIRPDVSTVC 185 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~k~pV~Tvv 185 (305)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..++.||++.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 677788888888888776555555555211 344554321 245667778889999999
Q ss_pred ecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 021957 186 VGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD 265 (305)
Q Consensus 186 ~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd 265 (305)
.|.|.++|.-|+++||. |++.++++|.+.....|..+ .+... ..+ + .+..|. ....+++-..
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~--~~~------l----~~~vG~--~~a~~l~ltg 182 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAG--ADMGA--CAL------L----PRIIGQ--GRASELLYTG 182 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCC--CCchH--HHH------H----HHHhCH--HHHHHHHHcC
Confidence 99999999999999999 99999999987655433221 11110 001 1 111122 2223333233
Q ss_pred cccCHHHHHHcCCcceecCC
Q 021957 266 YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~ 285 (305)
..++++||+++||||+|+..
T Consensus 183 ~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 183 RSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred CCCCHHHHHHcCCCcEecCH
Confidence 46799999999999999864
No 40
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=2e-06 Score=79.78 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=93.7
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHH------------------HHHHHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTA------------------GMAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------------g~aIyd~I~ 175 (305)
|.|+.+ ++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|.
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (260)
T PRK07511 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIR 95 (260)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 556655 77788888888888877666556555531 133444432 123455677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.++.||++.+.|.|..+|..|+++||. |++.++++|.+..-..|.. .+.. .-.. +.+..| .
T Consensus 96 ~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g--~~~~----------l~~~vg--~ 156 (260)
T PRK07511 96 AFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLT---PDGG--GSWF----------LARALP--R 156 (260)
T ss_pred cCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcC---CCch--HHHH----------HHHHhC--H
Confidence 788999999999999999999999999 9999999988654433321 1110 0000 111112 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-....|+++||+++||||+|+..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (260)
T PRK07511 157 QLATELLLEGKPISAERLHALGVVNRLAEP 186 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCccEeeCc
Confidence 233444433356799999999999999864
No 41
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.9e-06 Score=79.93 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=95.0
Q ss_pred EEEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHHHHh
Q 021957 122 IIRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-----------------MAIFDTMKH 176 (305)
Q Consensus 122 II~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-----------------~aIyd~I~~ 176 (305)
+|.|+.| ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRE 95 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 3566665 778888888888888877665665555421 233444321 234566777
Q ss_pred cCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021957 177 IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLE 256 (305)
Q Consensus 177 ~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e 256 (305)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..|.. .. +.+..| ..
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~--------~~----------l~~~~g--~~ 153 (257)
T PRK06495 96 CAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGG--------KH----------AMRLFG--HS 153 (257)
T ss_pred CCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccH--------HH----------HHHHhC--HH
Confidence 88999999999999999999999999 9999999988654433322210 00 111222 22
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 257 KINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 257 ~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...+++-....++++||+++||||+|+..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP 182 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence 33444433456799999999999999863
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.53 E-value=2.6e-06 Score=79.30 Aligned_cols=145 Identities=17% Similarity=0.083 Sum_probs=92.5
Q ss_pred EEEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEE-----eCCCCcHHH--------------HHHHHHHHHhcC
Q 021957 122 IIRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYV-----NSPGGSVTA--------------GMAIFDTMKHIR 178 (305)
Q Consensus 122 II~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a--------------g~aIyd~I~~~k 178 (305)
+|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..++
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (261)
T PRK03580 15 EITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLD 94 (261)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCC
Confidence 3556555 67777788888888777665556555531 144555432 123456677888
Q ss_pred CCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021957 179 PDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKI 258 (305)
Q Consensus 179 ~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I 258 (305)
+||++.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..... .+ .+.-| ....
T Consensus 95 kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---~~p~~g~~~-~l-----------~~~vg--~~~a 155 (261)
T PRK03580 95 KPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLG---IVPDSGGVL-RL-----------PKRLP--PAIA 155 (261)
T ss_pred CCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccC---cCCCccHHH-HH-----------HHHhC--HHHH
Confidence 999999999999999999999999 99999998875332222 111111000 01 11112 2223
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 259 NQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 259 ~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.+++-....++++||+++||||+|+..
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQ 182 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCH
Confidence 333322346799999999999999864
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.7e-06 Score=79.05 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=95.2
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH---------------HHHHHHHHHh
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA---------------GMAIFDTMKH 176 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~I~~ 176 (305)
+|.|+.| ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRH 98 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHh
Confidence 3556544 788888888888888887666665555321 34444432 1235566777
Q ss_pred cCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021957 177 IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLE 256 (305)
Q Consensus 177 ~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e 256 (305)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|. + ... .-.. +.+..|. .
T Consensus 99 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p-~~~--~~~~----------l~~~iG~--~ 158 (256)
T PRK06143 99 FPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---P-SVI--HAAL----------LPRLIGW--A 158 (256)
T ss_pred CCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCC---C-Ccc--HHHH----------HHHhcCH--H
Confidence 88999999999999999999999999 999999988763332221 1 111 0001 1222232 2
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 257 KINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 257 ~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...+++-....++++||+++||||+|+..
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVPL 187 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence 33344333356799999999999999864
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.49 E-value=3.6e-06 Score=78.45 Aligned_cols=143 Identities=12% Similarity=0.134 Sum_probs=92.1
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe------CCCCcHHHH--------------HHHHHHHHhc
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN------SPGGSVTAG--------------MAIFDTMKHI 177 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~ag--------------~aIyd~I~~~ 177 (305)
|.|+-| ++.++.+.+.+.+..++.++ .+.|+|.=+ |-|+++... ..+++.|..+
T Consensus 17 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 95 (261)
T PRK11423 17 ITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKF 95 (261)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhC
Confidence 555544 67888888888888777654 665555421 344554321 2355667788
Q ss_pred CCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021957 178 RPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEK 257 (305)
Q Consensus 178 k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~ 257 (305)
++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..- +. .+ .+..| ...
T Consensus 96 ~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~~~~g~----~~----~l----~~~vg--~~~ 156 (261)
T PRK11423 96 PKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGV---PYNLSG----IL----NF----TNDAG--FHI 156 (261)
T ss_pred CCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCC---CCCccH----HH----HH----HHHhH--HHH
Confidence 8999999999999999999999999 999999988754432221 111100 00 01 11112 222
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 258 INQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 258 I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
..+++-....++++||+++||||+|+..
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEV 184 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence 2333323346799999999999999863
No 45
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=3e-06 Score=79.10 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=92.3
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-------------------------H
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-------------------------M 168 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------------~ 168 (305)
|.++.| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... .
T Consensus 19 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06210 19 ITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQ 98 (272)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHH
Confidence 555554 777888888888887776555555555421 223443321 1
Q ss_pred HHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHH
Q 021957 169 AIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLA 248 (305)
Q Consensus 169 aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la 248 (305)
.+++.|..++.||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..... . + .
T Consensus 99 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~--~------l----~ 161 (272)
T PRK06210 99 TRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLI---AEHGISW--I------L----P 161 (272)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCC---CCCchhh--h------h----H
Confidence 2345677788999999999999999999999999 9999999998765543321 1110000 0 0 0
Q ss_pred HHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 249 YHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 249 ~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+..| ..+..+++-....++++||+++||||+|+..
T Consensus 162 ~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 162 RLVG--HANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred hhhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 1112 2233343323344599999999999999864
No 46
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.48 E-value=4.3e-06 Score=77.51 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=91.4
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHH-------------HHHHHHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTA-------------GMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------g~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|.+
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 67788888888888887666566555531 144455432 1235667788899999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....|. ..+..-. ..+.+..| .....+++-....|+++
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~ig--~~~a~~l~l~g~~~~a~ 166 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLGI---MPGAGGT------------QRLIRSVG--KSLASQMVLTGESITAQ 166 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcCC---CCCccHH------------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 999999998765443332 1111100 00112223 22223333333457999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 167 eA~~~Glv~~vv~~ 180 (255)
T PRK09674 167 QAQQAGLVSEVFPP 180 (255)
T ss_pred HHHHcCCCcEecCh
Confidence 99999999999864
No 47
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=5.7e-06 Score=77.18 Aligned_cols=138 Identities=17% Similarity=0.103 Sum_probs=92.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-------------GMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------g~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788888888888888877665666655322 45565532 1346677888899999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....| -..+..-. .. +.+.-| .....+++-....++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~--~~----------l~r~vG--~~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHARVG---ILPGWGLS--VR----------LPQKVG--IGRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccccC---cCCCccHH--HH----------HHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 99999999875332222 11111100 00 112223 22333333333456999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 169 eA~~~GLv~~vv~~ 182 (258)
T PRK06190 169 DALRAGLVTEVVPH 182 (258)
T ss_pred HHHHcCCCeEecCH
Confidence 99999999999863
No 48
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=4e-06 Score=78.05 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=88.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCC-CCCEEEEEe----CCCCcHHH--------------H-------HHHHHHHHhcCCCeE
Q 021957 129 VDDDMANIIVAQLLYLDAIDP-HKDIVIYVN----SPGGSVTA--------------G-------MAIFDTMKHIRPDVS 182 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~-~k~I~L~IN----SPGGsV~a--------------g-------~aIyd~I~~~k~pV~ 182 (305)
++.++...+.+.+..++.+++ .+.|+|.=. |.|+++.. + ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 677777888888777765443 455555421 33444332 1 235567778889999
Q ss_pred EEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 021957 183 TVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDT 262 (305)
Q Consensus 183 Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~ 262 (305)
+.+.|.|..+|.-|+++||. |++.+++++.+..+..|.. .+.. ....+ .+..| .....+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~---p~~g--~~~~l----------~~~vg--~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLV---PDGG--STWLL----------PRLVG--KARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCC---CCcc--HHHHH----------HHHhH--HHHHHHHH
Confidence 99999999999999999999 9999999998665543321 1110 00010 11111 11223332
Q ss_pred cCCcccCHHHHHHcCCcceecCC
Q 021957 263 DRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 263 ~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
-....|+++||+++||||+|+..
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDD 191 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCH
Confidence 22345799999999999999864
No 49
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=5.7e-06 Score=76.96 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=89.5
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-------------GMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------g~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 778888888888888876665666655321 33455432 1234566777889999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....|. ..+..-.. . +.+..|. ....+++-....++++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--------~----l~~~vG~--~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGL---MPGAGGTQ--------R----LVRAVGK--FKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCccccccc---CCCCcHHH--------H----HHHHhCH--HHHHHHHHcCCCCCHH
Confidence 99999999999 999999988763332221 11110000 0 1122222 2223333223457999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 173 eA~~~Glv~~vv~~ 186 (261)
T PRK08138 173 EALAIGLVSEVVED 186 (261)
T ss_pred HHHHCCCCcEecCc
Confidence 99999999999864
No 50
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.46 E-value=4.9e-06 Score=77.23 Aligned_cols=143 Identities=16% Similarity=0.133 Sum_probs=94.0
Q ss_pred EEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------HHHHHHHHHhcCCCeE
Q 021957 123 IRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------GMAIFDTMKHIRPDVS 182 (305)
Q Consensus 123 I~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------g~aIyd~I~~~k~pV~ 182 (305)
|.++.+ ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.+ ...++..|..+++||+
T Consensus 14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 93 (251)
T TIGR03189 14 LRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPIL 93 (251)
T ss_pred EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 566665 788888888888888887665665555321 34455432 1234556777889999
Q ss_pred EEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 021957 183 TVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDT 262 (305)
Q Consensus 183 Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~ 262 (305)
+.+.|.|..+|.-|+++||- |++.++++|.+-....|.. .... .. + +.+..|. ....+++
T Consensus 94 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~~--~~-~----------l~~~vg~--~~a~~l~ 153 (251)
T TIGR03189 94 VAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVF---APAA--SC-L----------LPERMGR--VAAEDLL 153 (251)
T ss_pred EEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCch--HH-H----------HHHHhCH--HHHHHHH
Confidence 99999999999999999999 9999999887633322211 1111 00 1 1222232 2333343
Q ss_pred cCCcccCHHHHHHcCCcceecCC
Q 021957 263 DRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 263 ~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
-...-|+++||+++||||+|+.+
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCc
Confidence 33345799999999999999864
No 51
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=4.1e-06 Score=77.74 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=93.5
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEE----EeCCCCcHHHH----------------------HHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIY----VNSPGGSVTAG----------------------MAI 170 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~ag----------------------~aI 170 (305)
+|.|+.+ ++.++.+.+.+.|..++.++..+.|+|. .=|.|+++... ..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRV 94 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHH
Confidence 3556544 6788888888888888876656655552 11344544321 113
Q ss_pred HHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 021957 171 FDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYH 250 (305)
Q Consensus 171 yd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~ 250 (305)
+..|+.+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..-. .. +.+.
T Consensus 95 ~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~--~~----------l~~~ 157 (262)
T PRK07509 95 SLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLV---PDMAGT--VS----------LRGL 157 (262)
T ss_pred HHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCC---CCchHH--HH----------HHHH
Confidence 34566788999999999999999999999999 9999999988755433321 111100 00 1111
Q ss_pred cCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 251 TGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 251 TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.| .....+++-....|+++||+++||||+|+.+
T Consensus 158 ~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 158 VR--KDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred hC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 12 2223344333356799999999999999854
No 52
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.45 E-value=3.2e-06 Score=77.40 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=91.0
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC------CcH---------------HHHHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG------GSV---------------TAGMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV---------------~ag~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.|..++.++..+ + +.|.+.| +++ .....++..|..++.||++.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~-v-vv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK-V-VVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES-E-EEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc-E-EEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 78888899999999998877666 3 3334433 333 34456677888888999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh-hcCCc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD-TDRDY 266 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~-~~rd~ 266 (305)
.|..+|..++++||. |++.+++.|.+-....|......-.. + +.+..|.. ...++ +.++
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~-----~----------l~r~~g~~--~a~~l~l~g~- 159 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTF-----R----------LPRLIGPS--RARELLLTGE- 159 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHH-----H----------HHHHHHHH--HHHHHHHHTC-
T ss_pred cccccccccccccce--EEeecccceeeeecccCccccccccc-----c----------cceeeecc--cccccccccc-
Confidence 999999999999999 99999999765443322211111110 1 11111111 11222 3443
Q ss_pred ccCHHHHHHcCCcceecCCc
Q 021957 267 FMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~~ 286 (305)
.++|+||+++||||+|+.+.
T Consensus 160 ~~~a~eA~~~Glv~~v~~~~ 179 (245)
T PF00378_consen 160 PISAEEALELGLVDEVVPDE 179 (245)
T ss_dssp EEEHHHHHHTTSSSEEESGG
T ss_pred cchhHHHHhhcceeEEcCch
Confidence 46999999999999998754
No 53
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=6.7e-06 Score=76.40 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=92.0
Q ss_pred EEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH---------------HHHHHHHHHhcC
Q 021957 123 IRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA---------------GMAIFDTMKHIR 178 (305)
Q Consensus 123 I~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~I~~~k 178 (305)
|.|+-| ++.++...+.+.+..++.++..+.|+|.=. |.|+++.. ...++..|..++
T Consensus 16 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (258)
T PRK09076 16 LTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFR 95 (258)
T ss_pred EEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCC
Confidence 445544 677788888888888876665555555321 23444432 123456677788
Q ss_pred CCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021957 179 PDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKI 258 (305)
Q Consensus 179 ~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I 258 (305)
+||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+..-. .. +.+..|.. ..
T Consensus 96 kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~--~~----------l~~~iG~~--~a 156 (258)
T PRK09076 96 GVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGLL---PCAGGT--QN----------LPWLVGEG--WA 156 (258)
T ss_pred CCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCC---CCccHH--HH----------HHHHhCHH--HH
Confidence 999999999999999999999999 9999999987644332211 111000 00 11112322 22
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 259 NQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 259 ~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.+++=....++++||+++||||+|+..
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEK 183 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCc
Confidence 223322345699999999999999864
No 54
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.44 E-value=4.3e-06 Score=77.34 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=94.9
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhcCCCe
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG------------MAIFDTMKHIRPDV 181 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag------------~aIyd~I~~~k~pV 181 (305)
|.++.+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..++..|..++.||
T Consensus 18 i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 97 (249)
T PRK07110 18 VTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPV 97 (249)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCE
Confidence 556543 677888888888888876665665655411 344554321 25667788888999
Q ss_pred EEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 182 STVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 182 ~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
++.+.|.|..+|..|+++||. |++.++++|.+.....| -..+.. ...+ +.+..| .....++
T Consensus 98 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---l~p~~g--~~~~----------l~~~~g--~~~a~~l 158 (249)
T PRK07110 98 IAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYG---FTPGMG--ATAI----------LPEKLG--LALGQEM 158 (249)
T ss_pred EEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccC---CCCCch--HHHH----------HHHHhC--HHHHHHH
Confidence 999999999999999999999 99999998865433222 111111 0011 111222 2233444
Q ss_pred hcCCcccCHHHHHHcCCcceecCC
Q 021957 262 TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 262 ~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+-...-++++||+++||||+|+..
T Consensus 159 lltg~~~~a~eA~~~Glv~~vv~~ 182 (249)
T PRK07110 159 LLTARYYRGAELKKRGVPFPVLPR 182 (249)
T ss_pred HHcCCccCHHHHHHcCCCeEEeCh
Confidence 433345699999999999999863
No 55
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=6.9e-06 Score=76.02 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=89.0
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH--------------HHHHHHHHHhcCCCeEEEEecccc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA--------------GMAIFDTMKHIRPDVSTVCVGLAA 190 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------g~aIyd~I~~~k~pV~Tvv~G~AA 190 (305)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.|.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 677888888888887776655555554211 33444321 124556778888999999999999
Q ss_pred hHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCH
Q 021957 191 SMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSP 270 (305)
Q Consensus 191 Saga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta 270 (305)
.+|..|+++||. |++.++++|.+-....|. ..+... ..+. .+..| .....+++-....+++
T Consensus 110 GgG~~la~acD~--ria~~~a~f~~pe~~~Gl---~p~~g~--~~~l----------~~~~g--~~~a~~l~l~g~~~~a 170 (251)
T PRK06023 110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLAL---VPEAGS--SLLA----------PRLMG--HQRAFALLALGEGFSA 170 (251)
T ss_pred cHHHHHHHhCCE--EEEeCCCEecCcccccCC---CCCchH--HHHH----------HHHHh--HHHHHHHHHhCCCCCH
Confidence 999999999999 999999999864433222 111110 0010 11112 1222223322245799
Q ss_pred HHHHHcCCcceecCC
Q 021957 271 KEAKDYGLIDGVIMN 285 (305)
Q Consensus 271 ~EA~eyGLID~Ii~~ 285 (305)
+||+++||||+|+..
T Consensus 171 ~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 171 EAAQEAGLIWKIVDE 185 (251)
T ss_pred HHHHHcCCcceeeCH
Confidence 999999999999864
No 56
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.43 E-value=5.6e-06 Score=77.69 Aligned_cols=143 Identities=16% Similarity=0.114 Sum_probs=92.0
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHHH--------------------------
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTAG-------------------------- 167 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~ag-------------------------- 167 (305)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.= =|-|+++...
T Consensus 21 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (275)
T PLN02664 21 LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFL 100 (275)
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHH
Confidence 555554 77888888888888887666555544421 1334444311
Q ss_pred HHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHH
Q 021957 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYL 247 (305)
Q Consensus 168 ~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~l 247 (305)
..+++.|..+++||++.+.|.|..+|..|+++||. |++.++++|.+-....|. ..+..... . +
T Consensus 101 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l 163 (275)
T PLN02664 101 QDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAI---TADLGTLQ--R----------L 163 (275)
T ss_pred HHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCC---CCCccHHH--H----------H
Confidence 12455677788999999999999999999999999 999999998764332221 11111000 0 1
Q ss_pred HHHcCCCHHHHHhh-hcCCcccCHHHHHHcCCcceecCC
Q 021957 248 AYHTGQSLEKINQD-TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 248 a~~TG~s~e~I~~~-~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.+..|.. ...++ +.+ ..|+++||+++||||+|+.+
T Consensus 164 ~~~vG~~--~A~~l~ltg-~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 164 PSIVGYG--NAMELALTG-RRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHhCHH--HHHHHHHhC-CCCCHHHHHHcCCCceeeCC
Confidence 1112222 22333 344 46699999999999999864
No 57
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.43 E-value=8e-06 Score=76.73 Aligned_cols=137 Identities=19% Similarity=0.263 Sum_probs=94.7
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHHH---hcCCCeEEEEecc
Q 021957 119 QHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTMK---HIRPDVSTVCVGL 188 (305)
Q Consensus 119 ~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I~---~~k~pV~Tvv~G~ 188 (305)
++++...+|.++++......+-+...+. -.-||+-.+||||.... .+..|...+. ..+.|+.+++.|.
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4556677899999877776665444332 35689999999997642 1244555544 4468999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|+|+|++.++.++. .+|.|++.+.+-.|.+. ..++. ++ ....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~------------a~il~-~~----------~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF------------ASILW-KD----------GSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH------------HHHHh-cC----------cccHHHHHHHc----CC
Confidence 99999999999988 99999999987777321 11221 00 01111222222 34
Q ss_pred CHHHHHHcCCcceecCCc
Q 021957 269 SPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~ 286 (305)
|+.++.+.|+||+|+..+
T Consensus 198 ~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 198 TAGELLEMGVVDKVIPEH 215 (256)
T ss_pred CHHHHHHCCCCcEecCCC
Confidence 999999999999999754
No 58
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.43 E-value=5.7e-06 Score=76.85 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=89.6
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHHH--------------HHHHHHHHhcCCCeEEEEeccc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTAG--------------MAIFDTMKHIRPDVSTVCVGLA 189 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~ag--------------~aIyd~I~~~k~pV~Tvv~G~A 189 (305)
++.++.+.+.+.|..++.++..+.|+|.=+ |.||++..- ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 677778888888887776665665555321 345555421 2355677788899999999999
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccC
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMS 269 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lt 269 (305)
..+|.-|+++||. |++.++++|.+-.+..|.. ..... .. . +.+..|.. ...+++-....|+
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~--~~-~----------l~~~vG~~--~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYG--TA-L----------LARVVGEK--KAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccH--HH-H----------HHHHhCHH--HHHHHHHhCCCcC
Confidence 9999999999999 9999999988644332211 00000 00 0 11222321 2222222234579
Q ss_pred HHHHHHcCCcceecCC
Q 021957 270 PKEAKDYGLIDGVIMN 285 (305)
Q Consensus 270 a~EA~eyGLID~Ii~~ 285 (305)
|+||+++||||+|+..
T Consensus 167 a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 167 AQEALAMGLVNAVVPH 182 (256)
T ss_pred HHHHHHcCCceeeeCH
Confidence 9999999999999863
No 59
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=5.9e-06 Score=78.38 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=88.9
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH--------------------------------HHHHH
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG--------------------------------MAIFD 172 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag--------------------------------~aIyd 172 (305)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++.
T Consensus 28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (296)
T PRK08260 28 FTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTL 107 (296)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 677788888888877776655555554211 334444321 12456
Q ss_pred HHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Q 021957 173 TMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTG 252 (305)
Q Consensus 173 ~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG 252 (305)
.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+..-. .. +.+..|
T Consensus 108 ~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~--~~----------l~r~vG 170 (296)
T PRK08260 108 RIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIV---PEAASS--WF----------LPRLVG 170 (296)
T ss_pred HHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcC---CCcchh--hh----------HHHhhC
Confidence 677788999999999999999999999999 9999999998755433321 111000 00 111112
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 253 QSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 253 ~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.....+++-....++++||+++||||+|+..
T Consensus 171 --~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 171 --LQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred --HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 1222333323345799999999999999864
No 60
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=5.3e-06 Score=77.25 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=88.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhcCCCeEEEEe
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------------GMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~I~~~k~pV~Tvv~ 186 (305)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|+.+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 667777777777777765554555555422 33344431 01256678888899999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|.|..+|.-|+++||. |++.++++|.+-....|.. .+.. ...+ ..+.| .....+++-...
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g--~~~~-----------~~~vG--~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLI---PATI--SPYV-----------VARMG--EANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCC---cccc--hhhH-----------Hhhcc--HHHHHHHHHhCC
Confidence 9999999999999999 9999999887644332211 1110 0001 11112 223334433334
Q ss_pred ccCHHHHHHcCCcceecCC
Q 021957 267 FMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~ 285 (305)
-++++||+++||||+|+..
T Consensus 169 ~~~a~eA~~~Glv~~v~~~ 187 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPA 187 (262)
T ss_pred ccCHHHHHHcCCcceecCH
Confidence 5699999999999999864
No 61
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=6.5e-06 Score=76.15 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=89.4
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHH----------------HHHHHHHHHhcCCCeEEEEecc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G~ 188 (305)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 67777888888887777666556555532 134555431 1235567778889999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|..+|.-|+++||. |++.++++|.+-....|.. .+..-.. .+ .+..|. ....+++-....+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~-~l-----------~~~vG~--~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGLI---PGFAGTQ-RL-----------PRYVGK--AKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCCC---CCCcHHH-HH-----------HHHhCH--HHHHHHHHcCCCc
Confidence 99999999999998 9999999887543322211 1111000 01 111232 2223333333457
Q ss_pred CHHHHHHcCCcceecCC
Q 021957 269 SPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~ 285 (305)
+++||+++||||+|+..
T Consensus 166 ~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 166 TGAEALKWGLVNGVFPE 182 (257)
T ss_pred CHHHHHHcCCcCeecCh
Confidence 99999999999999853
No 62
>PLN02888 enoyl-CoA hydratase
Probab=98.41 E-value=8.6e-06 Score=76.17 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=92.1
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhcCCCe
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG------------MAIFDTMKHIRPDV 181 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag------------~aIyd~I~~~k~pV 181 (305)
|.|+.+ ++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..++..|..+++||
T Consensus 23 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 102 (265)
T PLN02888 23 ITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPI 102 (265)
T ss_pred EEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCE
Confidence 455554 778888888888888887665665555411 333554321 23445677788999
Q ss_pred EEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 182 STVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 182 ~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
++.+.|.|.++|..|+++||. |++.++++|.+-....| -..+..... . +.+..| .....++
T Consensus 103 Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G---l~p~~g~~~--~----------l~~~vG--~~~a~~l 163 (265)
T PLN02888 103 IGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFG---IFPSWGLSQ--K----------LSRIIG--ANRAREV 163 (265)
T ss_pred EEEECCeeechHHHHHHhCCE--EEecCCCEecCcccccc---CCCCccHhh--H----------HHHHhC--HHHHHHH
Confidence 999999999999999999999 99999998875332222 111111000 0 111122 2222333
Q ss_pred -hcCCcccCHHHHHHcCCcceecCC
Q 021957 262 -TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 262 -~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+.+ ..|+++||+++||||+|+..
T Consensus 164 ~ltg-~~~~a~eA~~~Glv~~vv~~ 187 (265)
T PLN02888 164 SLTA-MPLTAETAERWGLVNHVVEE 187 (265)
T ss_pred HHhC-CccCHHHHHHcCCccEeeCh
Confidence 344 45699999999999999864
No 63
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.41 E-value=6.5e-06 Score=76.39 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=88.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC-------CcHHH---------------HHHHHHHHHhcCCCeEEEEe
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG-------GSVTA---------------GMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------g~aIyd~I~~~k~pV~Tvv~ 186 (305)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677788888888877776655555544 3433 43321 12356677788899999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-.. . +.+..|. ....+++-...
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGI---TPGFGGTQ--R----------LARIVGP--GKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCC---CCCccHHH--H----------HHHHhCH--HHHHHHHHhCC
Confidence 9999999999999999 999999998764433222 11111000 0 1111222 12223332234
Q ss_pred ccCHHHHHHcCCcceecCC
Q 021957 267 FMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~ 285 (305)
.++++||+++||||+|+..
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEP 185 (260)
T ss_pred CCCHHHHHHcCCCCcccCh
Confidence 5699999999999999863
No 64
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=5.5e-06 Score=76.88 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=91.7
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH------------H-------HHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA------------G-------MAIFDT 173 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a------------g-------~aIyd~ 173 (305)
|.++-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. . ..+++.
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (260)
T PRK05980 16 LTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTAR 95 (260)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 455544 677888888888888876665666655322 23444421 0 124556
Q ss_pred HHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Q 021957 174 MKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQ 253 (305)
Q Consensus 174 I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~ 253 (305)
|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+=....|. ..+..-.. . +.+..|
T Consensus 96 l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~vG- 157 (260)
T PRK05980 96 LEAFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGM---PPTFGGTQ--R----------LPRLAG- 157 (260)
T ss_pred HHhCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCC---CCCchHhh--H----------HHhhcC-
Confidence 77788999999999999999999999999 999999988763332221 11111000 0 111222
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 254 SLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 254 s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.....+++-....++++||+++||||+|+..
T Consensus 158 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 188 (260)
T PRK05980 158 -RKRALELLLTGDAFSAERALEIGLVNAVVPH 188 (260)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCCcccCH
Confidence 2222333323345799999999999999864
No 65
>PLN02600 enoyl-CoA hydratase
Probab=98.41 E-value=8.4e-06 Score=75.53 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=88.7
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH---------------HHHHHHHHHhcCCCeEEEEecc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA---------------GMAIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~I~~~k~pV~Tvv~G~ 188 (305)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 677888888888888877665666655321 33555432 1223455667789999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|.++|.-|+++||. |++.++++|.+-....| -..+..-.. . + .+..| .....+++-....|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G---l~p~~g~~~--~------l----~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGLA---IIPGAGGTQ--R------L----PRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccccC---cCCCchHHH--H------H----HHHhC--HHHHHHHHHhCCcc
Confidence 99999999999999 99999999876332222 111111000 0 1 11112 12223333223457
Q ss_pred CHHHHHHcCCcceecCC
Q 021957 269 SPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~ 285 (305)
+++||+++||||+|+..
T Consensus 160 ~a~eA~~~Glv~~vv~~ 176 (251)
T PLN02600 160 GAREAASMGLVNYCVPA 176 (251)
T ss_pred CHHHHHHcCCCcEeeCh
Confidence 99999999999999864
No 66
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=4.3e-06 Score=78.13 Aligned_cols=143 Identities=18% Similarity=0.209 Sum_probs=91.3
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH--------------------------H
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA--------------------------G 167 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------------------g 167 (305)
|.++-| ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. .
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRL 98 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 455554 788888888888887776555555554321 22344321 1
Q ss_pred HHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHH
Q 021957 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYL 247 (305)
Q Consensus 168 ~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~l 247 (305)
..+++.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+... .. .+
T Consensus 99 ~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~----~l---- 161 (272)
T PRK06142 99 QAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMV---ADVGS----LQ----RL---- 161 (272)
T ss_pred HHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCC---CCchH----HH----HH----
Confidence 23445577788999999999999999999999999 9999999887654432221 11110 00 01
Q ss_pred HHHcCCCHHHHHhh-hcCCcccCHHHHHHcCCcceecCC
Q 021957 248 AYHTGQSLEKINQD-TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 248 a~~TG~s~e~I~~~-~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.+..|. ....++ +.+ .-++++||+++||||+|+.+
T Consensus 162 ~~~~G~--~~a~~l~l~g-~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 162 PRIIGD--GHLRELALTG-RDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHhCH--HHHHHHHHhC-CCcCHHHHHHcCCccEecCC
Confidence 111222 122333 344 44699999999999999975
No 67
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.41 E-value=6.6e-06 Score=79.36 Aligned_cols=137 Identities=20% Similarity=0.295 Sum_probs=94.6
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHHH---hcCCCeEEEEecc
Q 021957 119 QHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTMK---HIRPDVSTVCVGL 188 (305)
Q Consensus 119 ~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I~---~~k~pV~Tvv~G~ 188 (305)
++++-..+|.++++-.....+-+...+. -.-||+-.+||||..+. .+.+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4566667788888877776665544433 35799999999997632 2345655554 5578999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|+|+|++.++.++. .+|.|++.+.+-.|.+. ..++. ++. ...++..+. .-+
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~------------a~Il~-kd~----------~~a~~aae~----~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC------------AAILW-KDA----------SKAPKAAEA----MKI 250 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHH------------HHHhc-cch----------hhHHHHHHH----ccC
Confidence 99999998888888 99999999987777321 11221 000 001111221 335
Q ss_pred CHHHHHHcCCcceecCCc
Q 021957 269 SPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~ 286 (305)
|+.++++.|+||+|+..+
T Consensus 251 ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 251 TAPDLKELGLIDSIIPEP 268 (316)
T ss_pred CHHHHHHCCCCeEeccCC
Confidence 899999999999999755
No 68
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=8.9e-06 Score=75.73 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=85.5
Q ss_pred eCH-hHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH----------------------HHHHHHHHhcCCCe
Q 021957 129 VDD-DMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG----------------------MAIFDTMKHIRPDV 181 (305)
Q Consensus 129 Idd-~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag----------------------~aIyd~I~~~k~pV 181 (305)
++. ++.+.+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 553 566777777777776555555555321 334443211 12445677788899
Q ss_pred EEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 182 STVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 182 ~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+..-. .. +.+..|. ....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~---p~~g~~--~~----------l~~~vG~--~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLI---PGDGGA--WL----------LPRIIGM--ARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcC---CCcchh--hh----------HHHHhhH--HHHHHH
Confidence 999999999999999999999 9999999987644433321 111000 00 0111121 122223
Q ss_pred hcCCcccCHHHHHHcCCcceecCC
Q 021957 262 TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 262 ~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+-....|+++||+++||||+|+..
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPA 191 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCH
Confidence 322346799999999999999864
No 69
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.41 E-value=5.9e-06 Score=82.13 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=88.3
Q ss_pred cceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCeEEEEecccchHHHH
Q 021957 126 GGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTM---KHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 126 gg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I---~~~k~pV~Tvv~G~AASaga~ 195 (305)
.|.++++-+....+-+...+. -.-+|+-.|||||.... .+.+|...+ ..++.|+++++.|-+.|+|++
T Consensus 199 fG~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAl 276 (431)
T PLN03230 199 FAMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGAL 276 (431)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHH
Confidence 356777776666655444433 35799999999996531 234565555 455689999999999999999
Q ss_pred HHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHH
Q 021957 196 LLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKD 275 (305)
Q Consensus 196 IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~e 275 (305)
.++.|+. .+|.+++.+.+-.|.+ +..++. ++ ..... +..+ ..-+|+.++++
T Consensus 277 alg~aD~--VlMle~A~ysVisPEg------------aAsILw-kd---------~~~A~-eAAe----alkitA~dL~~ 327 (431)
T PLN03230 277 AIGCGNR--MLMMENAVYYVASPEA------------CAAILW-KS---------AAAAP-KAAE----ALRITAAELVK 327 (431)
T ss_pred HhhcCCE--EEEecCCEEEecCHHH------------HHHHHh-cc---------ccchH-HHHH----HcCCCHHHHHh
Confidence 9999987 9999999988777632 111221 00 00011 1111 23579999999
Q ss_pred cCCcceecCCc
Q 021957 276 YGLIDGVIMNP 286 (305)
Q Consensus 276 yGLID~Ii~~~ 286 (305)
.|+||+|+..+
T Consensus 328 ~GiID~II~Ep 338 (431)
T PLN03230 328 LGVVDEIVPEP 338 (431)
T ss_pred CCCCeEeccCC
Confidence 99999999754
No 70
>PLN02921 naphthoate synthase
Probab=98.41 E-value=8.4e-06 Score=78.89 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=94.9
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHHh
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTAG----------------MAIFDTMKH 176 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~ag----------------~aIyd~I~~ 176 (305)
|.|+-+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.||++... ..++..|+.
T Consensus 80 ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 159 (327)
T PLN02921 80 ITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRR 159 (327)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHh
Confidence 556554 788888888888888887665555554321 345554320 124556777
Q ss_pred cCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021957 177 IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLE 256 (305)
Q Consensus 177 ~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e 256 (305)
+++||++.+.|.|..+|..|+++||. |++.++++|.+..+..|... ..... . .+ .+..| ..
T Consensus 160 ~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p--~~gg~-~-~L-----------~rliG--~~ 220 (327)
T PLN02921 160 LPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFD--AGYGS-S-IM-----------ARLVG--QK 220 (327)
T ss_pred CCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCC--CccHH-H-HH-----------HHHhC--HH
Confidence 88999999999999999999999999 99999999987665443210 00000 0 01 11112 22
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 257 KINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 257 ~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...+++-....|+|+||+++||||+|+..
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPL 249 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence 23333333356799999999999999863
No 71
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.40 E-value=8.2e-06 Score=78.80 Aligned_cols=137 Identities=18% Similarity=0.299 Sum_probs=93.6
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCeEEEEecc
Q 021957 119 QHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTM---KHIRPDVSTVCVGL 188 (305)
Q Consensus 119 ~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I---~~~k~pV~Tvv~G~ 188 (305)
++++-+.+|.++++.+....+-+...+. -.-||+-.+||||..+. .+.+|...+ ...+.|+.+++.|.
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4555566788888877776665444332 35799999999996532 123444444 46678999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|.|+|++.++.++. .+|.|++.+.+-.|.+ +..++. ++ .. ..++..+ ..-+
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg------------~a~Il~-~~---------~~-~a~~aae----~~~i 250 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEG------------CASILW-KD---------AS-KAPEAAE----AMKI 250 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHH------------HHHHHh-cC---------ch-hHHHHHH----HcCC
Confidence 99999999998988 9999999998777632 112221 00 00 1112222 2346
Q ss_pred CHHHHHHcCCcceecCCc
Q 021957 269 SPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~ 286 (305)
|+.++++.|+||+|+..+
T Consensus 251 ta~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 251 TAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CHHHHHHCCCceEeccCC
Confidence 999999999999999754
No 72
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.40 E-value=7.3e-06 Score=76.24 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=87.5
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.+..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 677777788887777776555555544321 23344321 123456777888999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|..+|.-|+++||. |++.++++|.+-....|.. .+..- ...+ .+..| .....+++-....
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~~~-~~~l-----------~~~vG--~~~a~~l~l~g~~ 167 (259)
T TIGR01929 107 YAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSF---DGGYG-SSYL-----------ARIVG--QKKAREIWFLCRQ 167 (259)
T ss_pred EEehHHHHHHHhCCE--EEecCCCEecCcccccccC---CCccH-HHHH-----------HHHhH--HHHHHHHHHhCCc
Confidence 999999999999999 9999999988755433321 01000 0001 11112 1122233322345
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
++++||+++||||+|+..
T Consensus 168 ~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 168 YDAEQALDMGLVNTVVPL 185 (259)
T ss_pred cCHHHHHHcCCcccccCH
Confidence 799999999999999863
No 73
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=7.6e-06 Score=75.54 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=90.4
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEE----EeCCCCcHHH----------HHHHHHHHHhcCCCeE
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIY----VNSPGGSVTA----------GMAIFDTMKHIRPDVS 182 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~a----------g~aIyd~I~~~k~pV~ 182 (305)
+|.|+-| ++.++.+.+.+.+..++. +..+.|+|. .=|-|+++.. ...++..|..++.||+
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~I 90 (243)
T PRK07854 12 TIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVI 90 (243)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3556543 788888888888877763 344544443 1133454431 1335566778889999
Q ss_pred EEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 021957 183 TVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDT 262 (305)
Q Consensus 183 Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~ 262 (305)
+.+.|.|.++|..|+++||- |++.++++|.+-....| -..+... .. .+.+..|. ....+++
T Consensus 91 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---~~p~~g~----~~--------~l~~~~G~--~~a~~l~ 151 (243)
T PRK07854 91 AAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYG---IALDNWT----IR--------RLSSLVGG--GRARAML 151 (243)
T ss_pred EEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccc---cCCCccH----HH--------HHHHHhCH--HHHHHHH
Confidence 99999999999999999999 99999999874222222 1111110 00 01222232 2223333
Q ss_pred cCCcccCHHHHHHcCCcceecC
Q 021957 263 DRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 263 ~rd~~lta~EA~eyGLID~Ii~ 284 (305)
-....|+++||+++||||+|..
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC
Confidence 3335679999999999999953
No 74
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=1.1e-05 Score=74.97 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=85.7
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH---------------HHHHHHHHHhcCCCeEEEEeccc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA---------------GMAIFDTMKHIRPDVSTVCVGLA 189 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a---------------g~aIyd~I~~~k~pV~Tvv~G~A 189 (305)
++.++.+.+.+.+..++ +..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 66777777777777665 33555544322 23444431 12345667778899999999999
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccC
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMS 269 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lt 269 (305)
..+|.-|+++||. |++.++++|.+-....|. ..+..... . +.+..|. ....+++-....|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~iG~--~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRGI---FVGGGGSV--R----------VPRLIGV--ARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccCC---CCCccHHH--H----------HHHHhCH--HHHHHHHHcCCcCC
Confidence 9999999999999 999999988763332221 11111000 0 1111222 22233332234579
Q ss_pred HHHHHHcCCcceecCC
Q 021957 270 PKEAKDYGLIDGVIMN 285 (305)
Q Consensus 270 a~EA~eyGLID~Ii~~ 285 (305)
++||+++||||+|+..
T Consensus 165 a~eA~~~Glv~~vv~~ 180 (255)
T PRK08150 165 AQEGERLGLAQYLVPA 180 (255)
T ss_pred HHHHHHcCCccEeeCc
Confidence 9999999999999874
No 75
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.38 E-value=1.1e-05 Score=75.55 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=91.6
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH----------------HHHHHHHHHhc
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA----------------GMAIFDTMKHI 177 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a----------------g~aIyd~I~~~ 177 (305)
|.++.| ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...+++.|..+
T Consensus 24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (266)
T PRK08139 24 LTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVAL 103 (266)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhC
Confidence 455544 677788888888877776555555554211 22344321 11245567788
Q ss_pred CCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021957 178 RPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEK 257 (305)
Q Consensus 178 k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~ 257 (305)
++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..... .. . .+ .+..| ...
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~---~~-~-~l-----------~r~vG--~~~ 163 (266)
T PRK08139 104 PQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCST---PM-V-AL-----------SRNVP--RKQ 163 (266)
T ss_pred CCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCc---cH-H-HH-----------HHHhC--HHH
Confidence 8999999999999999999999999 9999999987644433322111 00 0 01 11123 222
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 258 INQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 258 I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
..+++-....++++||+++||||+|+..
T Consensus 164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 191 (266)
T PRK08139 164 AMEMLLTGEFIDAATAREWGLVNRVVPA 191 (266)
T ss_pred HHHHHHcCCccCHHHHHHcCCccEeeCh
Confidence 2333333345699999999999999864
No 76
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.38 E-value=1e-05 Score=75.94 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=89.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV-----NSPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 67778888888888777666566555532 133454421 112455677888999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|..+|.-|+++||. |++.++++|.+-.+..|.. ....- ...+ .+..| .....+++-....
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~~~-~~~l-----------~~~vG--~~~a~~l~ltg~~ 177 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSF---DGGYG-ASYL-----------ARIVG--QKKAREIWFLCRQ 177 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEeccccccccc---CCchH-HHHH-----------HHHhh--HHHHHHHHHhCCC
Confidence 999999999999999 9999999988644432211 11000 0001 11112 1222333323346
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
|+++||+++||||+|+..
T Consensus 178 ~~A~eA~~~GLv~~vv~~ 195 (273)
T PRK07396 178 YDAQEALDMGLVNTVVPL 195 (273)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 799999999999999863
No 77
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=8.8e-06 Score=75.58 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=87.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhcCCCeEEEEe
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------------GMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~I~~~k~pV~Tvv~ 186 (305)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677777888888877776555554444311 23344421 12345566778899999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|.|..+|.-|+++||. |++.++++|.+-....|.. .+.. ...+ .+..| .....+++-...
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g--~~~l-----------~~~vg--~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLI---PATI--SPYV-----------IRAMG--ERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccC---ccch--HHHH-----------HHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987644333321 1111 0001 11122 222333332234
Q ss_pred ccCHHHHHHcCCcceecC
Q 021957 267 FMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~ 284 (305)
.++++||+++||||+|+.
T Consensus 168 ~~~a~eA~~~Glv~~vv~ 185 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVP 185 (262)
T ss_pred ccCHHHHHHcCCCCeecC
Confidence 569999999999999985
No 78
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=6.9e-06 Score=76.05 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=92.0
Q ss_pred EEEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhc
Q 021957 122 IIRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTAG----------------MAIFDTMKHI 177 (305)
Q Consensus 122 II~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~ag----------------~aIyd~I~~~ 177 (305)
+|.|+-| ++.++.+.+.+.+..++.++..+.|+|.= =|-|+++..- ..+++.|..+
T Consensus 14 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (249)
T PRK07938 14 EVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYEC 93 (249)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhC
Confidence 3455554 67777788888887777666555555531 1344555321 1244567778
Q ss_pred CCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021957 178 RPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEK 257 (305)
Q Consensus 178 k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~ 257 (305)
++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..|.. . . +.+..| ...
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~------~--~----------l~~~vg--~~~ 151 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAA------T--H----------LQRLVP--QHL 151 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhH------H--H----------HHHhcC--HHH
Confidence 8999999999999999999999999 9999999887633322221110 0 0 112222 223
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 258 INQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 258 I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
..+++-....++++||+++||||+|+.
T Consensus 152 a~~l~ltg~~~~a~eA~~~Glv~~vv~ 178 (249)
T PRK07938 152 MRALFFTAATITAAELHHFGSVEEVVP 178 (249)
T ss_pred HHHHHHhCCcCCHHHHHHCCCccEEeC
Confidence 333433335679999999999999986
No 79
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=8.9e-06 Score=76.36 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=90.8
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH----------------------HHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG----------------------MAIF 171 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag----------------------~aIy 171 (305)
|.++-| ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..++
T Consensus 23 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (276)
T PRK05864 23 ITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVI 102 (276)
T ss_pred EEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHH
Confidence 555544 677777888888887776655555555321 344554321 1234
Q ss_pred HHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHc
Q 021957 172 DTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHT 251 (305)
Q Consensus 172 d~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~T 251 (305)
+.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|... .+.... .+ +.+..
T Consensus 103 ~~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~--~~----------l~~~v 166 (276)
T PRK05864 103 LALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS--YL----------LPRAI 166 (276)
T ss_pred HHHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh--ee----------hHhhh
Confidence 5667788999999999999999999999999 99999998875333222110 011100 00 11112
Q ss_pred CCCHHHHHhh-hcCCcccCHHHHHHcCCcceecCC
Q 021957 252 GQSLEKINQD-TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 252 G~s~e~I~~~-~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
|. ....++ +.++ .++++||+++||||+|+..
T Consensus 167 G~--~~A~~l~l~g~-~~~a~eA~~~Glv~~vv~~ 198 (276)
T PRK05864 167 GS--SRAFEIMLTGR-DVDAEEAERIGLVSRQVPD 198 (276)
T ss_pred CH--HHHHHHHHcCC-ccCHHHHHHcCCcceeeCH
Confidence 32 222332 3443 4699999999999999864
No 80
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=1.4e-05 Score=74.78 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=93.5
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH-----------------HHHHHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA-----------------GMAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------g~aIyd~I~ 175 (305)
|.|+-+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|.
T Consensus 24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (269)
T PRK06127 24 ITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALA 103 (269)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 555544 778888888888888887665565554322 12444431 012345677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..- ...+ .+..| .
T Consensus 104 ~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~-~~~l-----------~~~vG--~ 164 (269)
T PRK06127 104 DYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLG---YGYDG-VKNL-----------VDLVG--P 164 (269)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCC---CCccH-HHHH-----------HHHhC--H
Confidence 788999999999999999999999999 9999999998755433321 11100 0001 11122 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-....++++||+++||||+|+..
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 194 (269)
T PRK06127 165 SAAKDLFYTARRFDAAEALRIGLVHRVTAA 194 (269)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCCEeeCH
Confidence 233333333345799999999999999863
No 81
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=1.1e-05 Score=74.64 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=90.6
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------HHHHHHHHHhcCCC
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------GMAIFDTMKHIRPD 180 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------g~aIyd~I~~~k~p 180 (305)
+|.|+-| ++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...++..|..+++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI 91 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4556554 778888888888888887665565554311 44555532 12244566777889
Q ss_pred eEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Q 021957 181 VSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQ 260 (305)
Q Consensus 181 V~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~ 260 (305)
|++.+.|.|..+|..++++||. |++.++++|.+.....|. ..+.... .+ + .+..|. ...+-
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl---~p~~g~~--~~------l----~~~~g~--~a~~l 152 (248)
T PRK06072 92 YISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGL---ASDTGVA--YF------L----LKLTGQ--RFYEI 152 (248)
T ss_pred EEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCc---CCCchHH--HH------H----HHHhhH--HHHHH
Confidence 9999999999999999999999 999999998764443222 1121110 01 1 111231 11122
Q ss_pred hhcCCcccCHHHHHHcCCccee
Q 021957 261 DTDRDYFMSPKEAKDYGLIDGV 282 (305)
Q Consensus 261 ~~~rd~~lta~EA~eyGLID~I 282 (305)
.+.++ .++++||+++||||++
T Consensus 153 ll~g~-~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 153 LVLGG-EFTAEEAERWGLLKIS 173 (248)
T ss_pred HHhCC-ccCHHHHHHCCCcccc
Confidence 34444 4699999999999964
No 82
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.37 E-value=9.3e-06 Score=76.58 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=94.1
Q ss_pred EEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe------CCCCcHHHH-----------------HHHHHHHH
Q 021957 123 IRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN------SPGGSVTAG-----------------MAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~ag-----------------~aIyd~I~ 175 (305)
|.|+.+ ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++..|.
T Consensus 25 itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (278)
T PLN03214 25 VWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLL 104 (278)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 555533 777888888888888887666666665321 444544321 11345677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.++.||++.+.|.|..+|..|+++||. |++.++++|.+-....|.. ..+.... ..+.+..| .
T Consensus 105 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~~------------~~l~~~~G--~ 166 (278)
T PLN03214 105 RSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWAR------------LFMGRVID--R 166 (278)
T ss_pred cCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhHH------------HHHHHhcC--H
Confidence 778899999999999999999999999 9999999987643322210 1111100 01122233 3
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-...-|+++||+++||||+|+..
T Consensus 167 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 167 KVAESLLLRGRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence 333344433345799999999999999864
No 83
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.37 E-value=1.2e-05 Score=74.59 Aligned_cols=143 Identities=16% Similarity=0.134 Sum_probs=90.6
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-----------H-------HHHHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-----------G-------MAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-----------g-------~aIyd~I~ 175 (305)
|.|+-| ++.++.+.+.+.|..++.++ .+.|+|.=+ |-|+++.. . ..+++.|.
T Consensus 12 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (256)
T TIGR02280 12 LTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLR 90 (256)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 455544 67788888888888888765 666665321 23344321 0 12345677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.+++||++.+.|.|..+|..|+++||. |++.++++|.+-....| -..+..-.. . + .+..|.
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG---~~p~~g~~~--~------l----~~~vG~-- 151 (256)
T TIGR02280 91 ALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQAFAKIG---LIPDSGGTW--S------L----PRLVGR-- 151 (256)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhcC---CCCCccHHH--H------H----HHHhCH--
Confidence 888999999999999999999999999 99999999875333222 111110000 0 1 111121
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-....++++||+++||||+|+..
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 181 (256)
T TIGR02280 152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD 181 (256)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceeeCh
Confidence 122233322345799999999999999864
No 84
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=1.3e-05 Score=74.44 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=88.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHHHH----------HH--HHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTAGM----------AI--FDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~ag~----------aI--yd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 677788888888888887666666655432 2355553211 11 122335678999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....|.. .+..- .. . +.+..| .....+++-....++++
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~----~----l~~~vg--~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGLA---ALAGG----LH----R----LPRQIG--LKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCCC---CCchH----HH----H----HHHHcC--HHHHHHHHHcCCcCCHH
Confidence 99999999999 9999999988755433321 11110 00 0 112223 22223333333467999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 169 eA~~~GLv~~vv~~ 182 (259)
T PRK06494 169 EGLELGFVNEVVPA 182 (259)
T ss_pred HHHHcCCCcEecCH
Confidence 99999999999864
No 85
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.36 E-value=1.2e-05 Score=75.07 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=86.6
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-----------------MAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-----------------~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++...+.+.|..++.++..+.|+|.=. |.|+++... ..++..|..+++||++.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 677888888888888887665565555311 333443210 12344556778899999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|..+|..|+++||. |++.++++|.+-....|.. .+..-.. . + .+..|. ....+++-....
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~--~------l----~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVA---AGDHAAI--V------W----PLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccCCC---CCcchhh--H------H----HHHhCH--HHHHHHHHcCCc
Confidence 999999999999999 9999999987533222221 1110000 0 0 011121 122223323345
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
|+|+||+++||||+|+..
T Consensus 177 ~~a~eA~~~Glv~~vv~~ 194 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDD 194 (268)
T ss_pred cCHHHHHHcCCcceecCH
Confidence 799999999999999863
No 86
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.35 E-value=1.3e-05 Score=74.64 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=89.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677788888888888776655566555421 33455431 122445567778899999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|..+|.-++++||. |++.++++|.+-... ..|-...... .. .+.+..| .....+++-....
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~--~~G~~p~~g~----~~--------~l~~~vG--~~~a~~l~l~g~~ 173 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIAR--TLGNCLSMSN----LA--------RLVALLG--AARVKDMLFTARL 173 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHH--hccCCCCccH----HH--------HHHHHhC--HHHHHHHHHcCCC
Confidence 999999999999999 999999998753221 0121111110 00 0122223 2233344333456
Q ss_pred cCHHHHHHcCCcceecCC
Q 021957 268 MSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~ 285 (305)
++++||+++||||+|+..
T Consensus 174 ~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 174 LEAEEALAAGLVNEVVED 191 (262)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 799999999999999864
No 87
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.34 E-value=1.3e-05 Score=74.37 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=86.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC------CcHHH-------------------HHHHHHHHHhcCCCeEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG------GSVTA-------------------GMAIFDTMKHIRPDVST 183 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a-------------------g~aIyd~I~~~k~pV~T 183 (305)
++.++...+.+.|..++.++..+.|+| .+-| +++.. ...++..|..++.||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 677777778777777776555554444 3334 34321 12344567778899999
Q ss_pred EEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc
Q 021957 184 VCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTD 263 (305)
Q Consensus 184 vv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~ 263 (305)
.+.|.|..+|..|+++||. |++.++++|.+-....|. ..+..-.. . +.+.-|. ....+++-
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~vg~--~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGL---APDAGGLF--L----------LTRAIGL--NRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCC---CCCCchhh--h----------hHHhhCH--HHHHHHHH
Confidence 9999999999999999999 999999998752221121 11110000 0 0111122 22333433
Q ss_pred CCcccCHHHHHHcCCcceecCC
Q 021957 264 RDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 264 rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....++++||+++||||+|+..
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~~ 186 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAES 186 (255)
T ss_pred hCCccCHHHHHHcCCcceecCH
Confidence 3356799999999999999864
No 88
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.33 E-value=1.7e-05 Score=73.68 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=88.0
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTAG-------------------MAIFDTMKHIRPDVSTVC 185 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~ag-------------------~aIyd~I~~~k~pV~Tvv 185 (305)
++.++.+.+.+.+..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888888887 66666666532 1334444210 114556777889999999
Q ss_pred ecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 021957 186 VGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD 265 (305)
Q Consensus 186 ~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd 265 (305)
.|.|..+|..|+++||. |++.++++|.+-.... |-..+..-.. . + .+.-| .....+++-..
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~---G~~p~~g~~~--~------l----~~~vG--~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKI---GLVPDSGGTW--F------L----PRLVG--MARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEecccccc---CCCCCccHHH--H------H----HHHhC--HHHHHHHHHcC
Confidence 99999999999999999 9999999987533222 2111111000 0 1 11112 12223333233
Q ss_pred cccCHHHHHHcCCcceecCC
Q 021957 266 YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~ 285 (305)
..++++||+++||||+|+..
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred CCcCHHHHHHcCCccEeeCh
Confidence 45799999999999999864
No 89
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.33 E-value=1.7e-05 Score=73.54 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=88.0
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH---------------HH-HHHHHHhc
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG---------------MA-IFDTMKHI 177 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag---------------~a-Iyd~I~~~ 177 (305)
|.|+-| ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++... .. +...|+.+
T Consensus 12 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (255)
T PRK06563 12 IGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRL 91 (255)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcC
Confidence 455544 677777888888777776554444433210 223443210 11 12246667
Q ss_pred CCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021957 178 RPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEK 257 (305)
Q Consensus 178 k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~ 257 (305)
++||++.+.|.|..+|..|+++||. |++.++++|.+.....|.. ....... . + .+..|. ..
T Consensus 92 ~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~----~----l----~~~vG~--~~ 152 (255)
T PRK06563 92 SKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGIL---PFGGATL----R----F----PQAAGW--GN 152 (255)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHHH----H----H----HHHhhH--HH
Confidence 8899999999999999999999999 9999999988755433321 1100000 0 1 111121 12
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 258 INQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 258 I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
..+++-....|+++||+++||||+|+..
T Consensus 153 a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 153 AMRYLLTGDEFDAQEALRLGLVQEVVPP 180 (255)
T ss_pred HHHHHHcCCCcCHHHHHHcCCCcEeeCH
Confidence 2333323345799999999999999864
No 90
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=9.8e-06 Score=76.78 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=86.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-------------------------------------H
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-------------------------------------G 167 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------------------------------g 167 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. .
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677777888887777776555555555311 22343321 0
Q ss_pred HHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHH
Q 021957 168 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYL 247 (305)
Q Consensus 168 ~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~l 247 (305)
..++..|+.+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..| ... +. +
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~----~~-l-------- 168 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEY----FA-H-------- 168 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chH----HH-H--------
Confidence 12335567788999999999999999999999999 99999999875333323222 110 00 0
Q ss_pred HHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 248 AYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 248 a~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....| .....+++-....++++||+++||||+|+..
T Consensus 169 ~~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 169 PWELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred HHHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 00112 2222333323346799999999999999864
No 91
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.31 E-value=2e-05 Score=73.05 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=87.9
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-------------GMAIFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------g~aIyd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...++..|..++.||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 677778888888877776665565555411 22344321 1234566778889999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....|. ..+..-.. . +.+..|. ....+++-....++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~vG~--~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGV---LPGMGGSQ--R----------LTRAVGK--AKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCc---CCCccHHH--H----------HHHHhCH--HHHHHHHHhCCccCHH
Confidence 99999999999 999999988763332221 11111000 0 1122222 2223333233467999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 169 eA~~~Glv~~vv~~ 182 (257)
T PRK05862 169 EAERAGLVSRVVPA 182 (257)
T ss_pred HHHHcCCCCEeeCH
Confidence 99999999999864
No 92
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.31 E-value=7.3e-06 Score=79.19 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=93.7
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCeEEEEecc
Q 021957 119 QHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTM---KHIRPDVSTVCVGL 188 (305)
Q Consensus 119 ~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I---~~~k~pV~Tvv~G~ 188 (305)
++++-+.+|..+++-.....+-+...+. -.-||+-.|||||..+. .+.+|...+ ...+.|+.+++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~--f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANK--FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 3444445677778777766654443332 35799999999997632 234565554 46678999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|+|+|++.++.+|. .+|.+++.+.+-.|.+. ..++. ++.++..+..+. .-+
T Consensus 203 ggsGGAlal~~aD~--V~m~e~a~~sVisPEg~------------a~Il~--------------~d~~~a~~aA~~-~~i 253 (322)
T CHL00198 203 GGSGGALGIGIGDS--IMMLEYAVYTVATPEAC------------AAILW--------------KDSKKSLDAAEA-LKI 253 (322)
T ss_pred ccHHHHHhhhcCCe--EEEeCCeEEEecCHHHH------------HHHHh--------------cchhhHHHHHHH-cCC
Confidence 99999999998988 99999999988777321 11221 111122222222 346
Q ss_pred CHHHHHHcCCcceecCCc
Q 021957 269 SPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~ 286 (305)
|+++-+++|+||+|+..+
T Consensus 254 ta~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 254 TSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred CHHHHHhCCCCeEeccCC
Confidence 999999999999999754
No 93
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.30 E-value=2.2e-05 Score=72.88 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=91.2
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC-------CcHHH---------------HHHHHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG-------GSVTA---------------GMAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------g~aIyd~I~ 175 (305)
|.|+-+ ++.++...+.+.+..++.++..+.|+| .+-| +++.. ...+++.|.
T Consensus 17 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (260)
T PRK07657 17 ITLNRPRAANALSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVE 94 (260)
T ss_pred EEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHH
Confidence 455544 788888888888888877655554444 3333 33321 123456677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+..- ...+ .+..| .
T Consensus 95 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g~-~~~l-----------~~~vG--~ 155 (260)
T PRK07657 95 QLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAII---PGAGG-TQRL-----------PRLIG--V 155 (260)
T ss_pred hCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcC---CCccH-HHHH-----------HHHhC--H
Confidence 788999999999999999999999999 9999999887644433321 11110 0001 11112 1
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-....++++||+++||||+|+..
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK07657 156 GRAKELIYTGRRISAQEAKEIGLVEFVVPA 185 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCCeecCH
Confidence 122233322234799999999999999864
No 94
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.30 E-value=2.2e-05 Score=72.45 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=89.5
Q ss_pred EEEEcce----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH-----------------HHHHHHHHH
Q 021957 122 IIRCGGA----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA-----------------GMAIFDTMK 175 (305)
Q Consensus 122 II~Lgg~----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------g~aIyd~I~ 175 (305)
+|.|+.+ ++.++.+.+.+.+..++.++....+++.-. |.|+++.. ...++..|.
T Consensus 12 ~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (239)
T PLN02267 12 ILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLI 91 (239)
T ss_pred EEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHh
Confidence 3445554 777788888888877776544343444322 33454321 122445577
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecC-CceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLP-NSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQS 254 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~P-nS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s 254 (305)
.+++||++.+.|.|..+|..|+++||. |++.+ .+++.+-....|.. ..... . ..+....|..
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--~p~~~--~-----------~~l~~~vG~~ 154 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLP--LPDYF--M-----------ALLRAKIGSP 154 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCC--CChHH--H-----------HHHHHHcChH
Confidence 778899999999999999999999999 99985 45676533322211 01110 0 0112223322
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCc
Q 021957 255 LEKINQDTDRDYFMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 255 ~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~ 286 (305)
.. ..+++-....|+++||+++||||+|+.+.
T Consensus 155 ~a-~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 155 AA-RRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred HH-HHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 21 12334333567999999999999999753
No 95
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.29 E-value=2.3e-05 Score=73.66 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=88.7
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-------------------MAIFDTMKHIRPDVSTVC 185 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~k~pV~Tvv 185 (305)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++... ..++..|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788888888888888877665665555321 233443320 123556777889999999
Q ss_pred ecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 021957 186 VGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD 265 (305)
Q Consensus 186 ~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd 265 (305)
.|.|..+|.-|+++||. |++.++++|.+=....|. ..+.... .. +.+..| .....+++-..
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~--~~----------l~~~iG--~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGI---PPGGGVS--KA----------MADTVG--HRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCC---CCCcchH--HH----------HHHHcC--HHHHHHHHhcC
Confidence 99999999999999999 999999998763222221 1111000 00 112223 22223333223
Q ss_pred cccCHHHHHHcCCcceecCC
Q 021957 266 YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~ 285 (305)
..|+++||+++||||+|+..
T Consensus 173 ~~~~A~eA~~~Glv~~vv~~ 192 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVPL 192 (275)
T ss_pred CccCHHHHHHcCCcceecCH
Confidence 45799999999999999864
No 96
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.29 E-value=1.8e-05 Score=73.94 Aligned_cols=137 Identities=10% Similarity=0.069 Sum_probs=87.7
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhcCCCeEEEEe
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------------GMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~I~~~k~pV~Tvv~ 186 (305)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++.. ...+...|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677777888888877776665565555221 34454431 01244556677889999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
|.|..+|.-|+++||. |++.++++|.+-.... |-..+.. ...+ .+..|. ....+++-...
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~---Gi~p~~~--~~~l-----------~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRI---GLAPAVI--SPFV-----------VKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCccccc---CCCcchh--HHHH-----------HHHhCH--HHHHHHHHhCc
Confidence 9999999999999999 9999999887633222 2121211 0001 112232 22233332334
Q ss_pred ccCHHHHHHcCCcceecCC
Q 021957 267 FMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii~~ 285 (305)
.|+++||+++||||+|+..
T Consensus 170 ~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 170 RFDGRRARELGLLAESYPA 188 (265)
T ss_pred ccCHHHHHHCCCcceecCH
Confidence 5799999999999999863
No 97
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.27 E-value=1.2e-05 Score=74.31 Aligned_cols=133 Identities=17% Similarity=0.068 Sum_probs=86.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH---------------HHHHHHHHhcCCCeEEEEeccc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG---------------MAIFDTMKHIRPDVSTVCVGLA 189 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag---------------~aIyd~I~~~k~pV~Tvv~G~A 189 (305)
++.++.+.+.+.|..++.++..+.|+|.=. |.|+++... ...+..|..+++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 677888888888888776655555554311 233443221 1233456677889999999999
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEeccCCCcc---CCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQ---GGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 266 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~---G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~ 266 (305)
..+|.-|+++||. |++.++++|.+.....|.. |...-+ .+..| .....+++-...
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~~G--~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWML------------------QRAVG--PQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceeeH------------------HhhhC--HHHHHHHHHhCC
Confidence 9999999999999 9999999997654433321 111001 11112 222233332234
Q ss_pred ccCHHHHHHcCCcceec
Q 021957 267 FMSPKEAKDYGLIDGVI 283 (305)
Q Consensus 267 ~lta~EA~eyGLID~Ii 283 (305)
.++++||+++||||+|+
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 57999999999999998
No 98
>PRK08321 naphthoate synthase; Validated
Probab=98.26 E-value=3.4e-05 Score=73.56 Aligned_cols=145 Identities=17% Similarity=0.085 Sum_probs=95.0
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEE-----------EeCCCCcHHHH------------------
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIY-----------VNSPGGSVTAG------------------ 167 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~-----------INSPGGsV~ag------------------ 167 (305)
+|.|+-| ++.++...+.+.|..++.++..+.|+|. .=|.||++...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 3556554 7788888888888888877666766664 33667765420
Q ss_pred -----H---HHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEec-CCceEEEeccCCCccCCCcchHHHHHHHHH
Q 021957 168 -----M---AIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSL-PNSRIMIHQPLGGAQGGQTDIDIQANEMLH 238 (305)
Q Consensus 168 -----~---aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~-PnS~imiHqP~~g~~G~a~di~~~akel~~ 238 (305)
. .+.+.|..+++||++.+.|.|..+|.-|+++||. |++. ++++|.+-....|.. ....-.. .
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~---p~~~~~~--~-- 187 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSF---DGGYGSA--Y-- 187 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccC---CCchHHH--H--
Confidence 0 2345567778999999999999999999999999 9998 689887533322211 0100000 0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 239 HKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 239 ~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+.+..|. ....+++-....|+|+||+++||||+|+..
T Consensus 188 --------L~r~vG~--~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 188 --------LARQVGQ--KFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred --------HHHHhCH--HHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 1222232 222333333356799999999999999864
No 99
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.26 E-value=2.9e-05 Score=72.28 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=90.6
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHHH----------------HH--HHHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAGM----------------AI--FDTM 174 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag~----------------aI--yd~I 174 (305)
+|.++-| ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.... .+ ...+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG 96 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHH
Confidence 3556554 777888888888888887666665555321 3345443210 01 1113
Q ss_pred HhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021957 175 KHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQS 254 (305)
Q Consensus 175 ~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s 254 (305)
..+++||++.+.|.|.++|.-|+++||- |++.++++|.+-....|.. .+..... . +.+..|
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~--~----------l~r~vG-- 157 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLF---PMGGSAV--R----------LVRQIP-- 157 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcC---CCccHHH--H----------HHHHhC--
Confidence 4567899999999999999999999999 9999999987644332211 1111000 0 111122
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 255 LEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 255 ~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.....+++-....|+++||+++||||+|+..
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 188 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPD 188 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCc
Confidence 2233334333345799999999999999864
No 100
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=3.1e-05 Score=70.65 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=83.1
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC------CcHH--------------HHHHHHHHHHhcCCCeEEEEecc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG------GSVT--------------AGMAIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~--------------ag~aIyd~I~~~k~pV~Tvv~G~ 188 (305)
++.++.+.+.+.+..++ + ..+.|+ |...| +++. ....++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~-~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-D-DRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-c-cCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67777788887777666 2 233333 33333 3332 12334556667789999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCC-ceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPN-SRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~Pn-S~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
|.++|..|+++||. |++.++ ++|.+-....|.. .... ...+ +.++.|. ....+++-....
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~---~~~~----------l~~~~g~--~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHA---AIEL----------ARDRLTP--SAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChH---HHHH----------HHHHcCH--HHHHHHHHcCcc
Confidence 99999999999999 999999 8877533222211 1110 0001 1112222 223333434456
Q ss_pred cCHHHHHHcCCcceecC
Q 021957 268 MSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~ 284 (305)
++++||+++||||+|+.
T Consensus 163 ~~a~eA~~~Glv~~vv~ 179 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVP 179 (229)
T ss_pred cCHHHHHHCCCceeccC
Confidence 89999999999999985
No 101
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.25 E-value=2.2e-05 Score=72.88 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=84.7
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHH-----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTA-----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.|..++ + ..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|
T Consensus 28 l~~~~~~~L~~~l~~~~-~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCE-H-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhh-c-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 66777777777776665 2 244443321 133444321 123455667778899999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcc
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYF 267 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~ 267 (305)
.|..+|..|+++||. |++.++++|.+.....|.. .... . .. +.+..| .....+++-....
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~~--~-~~----------l~~~vg--~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLI---PACV--L-PF----------LIRRIG--TQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccC---cchh--h-HH----------HHHHhC--HHHHHHHHHhCCc
Confidence 999999999999998 9999999998755433321 1110 0 00 112222 2222333322345
Q ss_pred cCHHHHHHcCCcceecCCc
Q 021957 268 MSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 268 lta~EA~eyGLID~Ii~~~ 286 (305)
++++||+++||||+|+.+.
T Consensus 166 ~~a~eA~~~Glv~~vv~~~ 184 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGANS 184 (255)
T ss_pred ccHHHHHHcCCCceecCcH
Confidence 7999999999999998753
No 102
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=3.5e-05 Score=71.47 Aligned_cols=144 Identities=15% Similarity=0.025 Sum_probs=90.1
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEE----EeCCCCcHHHHH----------HHHHHH-HhcCCCeE
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIY----VNSPGGSVTAGM----------AIFDTM-KHIRPDVS 182 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~ag~----------aIyd~I-~~~k~pV~ 182 (305)
|.|+-+ ++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.... .+...+ ..+++||+
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvI 95 (254)
T PRK08252 16 ITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLI 95 (254)
T ss_pred EEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEE
Confidence 455544 6788888888888888876656655553 114445553210 111111 24668999
Q ss_pred EEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 021957 183 TVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDT 262 (305)
Q Consensus 183 Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~ 262 (305)
+.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..-.. . +.+..| .....+++
T Consensus 96 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~~--~----------l~~~vg--~~~a~~l~ 156 (254)
T PRK08252 96 AAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRG---LVAAGGGLL--R----------LPRRIP--YHIAMELA 156 (254)
T ss_pred EEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcC---CCCCchHHH--H----------HHHHcC--HHHHHHHH
Confidence 99999999999999999999 99999998875333222 111111000 0 112223 22333443
Q ss_pred cCCcccCHHHHHHcCCcceecCC
Q 021957 263 DRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 263 ~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
-....++++||+++||||+|+..
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~ 179 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEP 179 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCc
Confidence 33345799999999999999864
No 103
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=3.5e-05 Score=71.55 Aligned_cols=138 Identities=17% Similarity=0.077 Sum_probs=86.3
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHHH-----H--------HHHHHHhcCCCeEEEEecccch
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAGM-----A--------IFDTMKHIRPDVSTVCVGLAAS 191 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag~-----a--------Iyd~I~~~k~pV~Tvv~G~AAS 191 (305)
++.++...+.+.|..++.++..+.|+|.=+ |.|+++.... . +...+..+++||++.+.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 677888888888888887665665555321 4455543210 0 0111224578999999999999
Q ss_pred HHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHH
Q 021957 192 MGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPK 271 (305)
Q Consensus 192 aga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~ 271 (305)
+|.-|+++||. |++.++++|.+-....|. ..... . .. . +.+..| .....+++-....|+++
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g--~--~~----~----l~~~iG--~~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCRRWGV---PLIDG--G--TV----R----LPRLIG--HSRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCcccccCC---CCCcc--H--HH----H----HHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 999999988753322221 11110 0 00 0 112223 22333333333467999
Q ss_pred HHHHcCCcceecCC
Q 021957 272 EAKDYGLIDGVIMN 285 (305)
Q Consensus 272 EA~eyGLID~Ii~~ 285 (305)
||+++||||+|+..
T Consensus 168 eA~~~Glv~~vv~~ 181 (254)
T PRK08259 168 EALAIGLANRVVPK 181 (254)
T ss_pred HHHHcCCCCEeeCh
Confidence 99999999999864
No 104
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.22 E-value=2.6e-05 Score=74.15 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=84.8
Q ss_pred eCHhHHHHHHHHHHHhhh-----cCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHH------h
Q 021957 129 VDDDMANIIVAQLLYLDA-----IDPHKDIVIYVN-----SPGGSVTAG----------------MAIFDTMK------H 176 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~-----~d~~k~I~L~IN-----SPGGsV~ag----------------~aIyd~I~------~ 176 (305)
++.++.+.+.+.+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 667777888888887776 443444444322 334444321 12233333 4
Q ss_pred cCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021957 177 IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLE 256 (305)
Q Consensus 177 ~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e 256 (305)
++.||++.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..-. .+ +.+..| ..
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG---l~p~~g~~--~~----------l~~~vG--~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN---LFPGMGAY--SF----------LARRVG--PK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC---cCCCchHH--HH----------HHHHhh--HH
Confidence 56789999999999999999999999 99999998775332222 11111100 00 112223 22
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 257 KINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 257 ~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...+++-....|+++||+++||||+|+..
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 33334333345799999999999999864
No 105
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.21 E-value=1.1e-05 Score=76.38 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=102.3
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH-------------HHHHHHHHhcCC
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-------------MAIFDTMKHIRP 179 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-------------~aIyd~I~~~k~ 179 (305)
+|.|+-| ++..+..++.+.+..+++++..+.|+|+=- |-|+++.+. +..++.+..++.
T Consensus 49 lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~K 128 (290)
T KOG1680|consen 49 LITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKK 128 (290)
T ss_pred EEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhccc
Confidence 3555544 778888999999999999887777777621 233443322 335677778899
Q ss_pred CeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCc---cCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 021957 180 DVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGA---QGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLE 256 (305)
Q Consensus 180 pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~---~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e 256 (305)
||++.+.|.|-.+|.-|++.||. |+|.++|.|+.-++..|. .|-..-+ ..+ -|.+
T Consensus 129 PvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl--------------~r~----vG~s-- 186 (290)
T KOG1680|consen 129 PVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRL--------------PRI----VGKS-- 186 (290)
T ss_pred ceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchhhH--------------HHH----hChH--
Confidence 99999999999999999999999 999999999987775542 2322211 111 2322
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCc
Q 021957 257 KINQDTDRDYFMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 257 ~I~~~~~rd~~lta~EA~eyGLID~Ii~~~ 286 (305)
+-.+++-..+.++++||++.|||++|+...
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecch
Confidence 223344445667999999999999998754
No 106
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=2.7e-05 Score=72.40 Aligned_cols=135 Identities=21% Similarity=0.141 Sum_probs=84.3
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH----------------HHHHHHHHhcCCCeEEEEecc
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG----------------MAIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag----------------~aIyd~I~~~k~pV~Tvv~G~ 188 (305)
++.++.+.+.+.+..++ ++..+.|+|.=+ |.|+++..- ..++..|..++.||++.+.|.
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 67777888888887773 444443333211 233444321 123445566788999999999
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|..+|.-|+++||. |++.++++|.+.....|... +..- . .. +.+.. ......+++-....|
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~-~-~~----------L~~~v--g~~~a~~l~ltg~~~ 169 (260)
T PRK07659 109 AAGLGLSIALTADY--VIADISAKLAMNFIGIGLIP---DGGG-H-FF----------LQKRV--GENKAKQIIWEGKKL 169 (260)
T ss_pred eecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCC---CCch-h-hh----------HHHhc--CHHHHHHHHHhCCcc
Confidence 99999999999999 99999999876554333211 1000 0 00 11111 223333444333567
Q ss_pred CHHHHHHcCCcceec
Q 021957 269 SPKEAKDYGLIDGVI 283 (305)
Q Consensus 269 ta~EA~eyGLID~Ii 283 (305)
+++||+++||||+|+
T Consensus 170 ~a~eA~~~Glv~~vv 184 (260)
T PRK07659 170 SATEALDLGLIDEVI 184 (260)
T ss_pred CHHHHHHcCChHHHh
Confidence 999999999999997
No 107
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.20 E-value=3.8e-05 Score=75.37 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=89.3
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH------------------HHHHHHHHHhcCCCeEEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA------------------GMAIFDTMKHIRPDVSTVC 185 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a------------------g~aIyd~I~~~k~pV~Tvv 185 (305)
++.++...+.+.+..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788888888888888886655555555322 22344321 1235566778889999999
Q ss_pred ecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh-hhcC
Q 021957 186 VGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQ-DTDR 264 (305)
Q Consensus 186 ~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~-~~~r 264 (305)
.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..- ... + ....|. ..... .+.+
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl---~P~~Gg--t~r------L----prlvG~--~rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGS---APIGGA--TDF------L----PLMIGC--EQAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCC---CCCccH--HHH------H----HHhhCH--HHHHHHHHhC
Confidence 99999999999999999 999999998874443321 111100 000 1 111121 11122 2334
Q ss_pred CcccCHHHHHHcCCcceecCC
Q 021957 265 DYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 265 d~~lta~EA~eyGLID~Ii~~ 285 (305)
+ .++|+||++.||||+|+..
T Consensus 193 e-~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 193 E-PWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred C-cCcHHHHHHcCChheecCc
Confidence 3 5699999999999999864
No 108
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=4.1e-05 Score=72.86 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=90.8
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH--------------------------
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG-------------------------- 167 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------------- 167 (305)
|.|+.| ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++...
T Consensus 23 Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (302)
T PRK08272 23 ITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDD 102 (302)
T ss_pred EEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccc
Confidence 556554 677888888888888776665665555321 334444321
Q ss_pred --------------HHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHH
Q 021957 168 --------------MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 233 (305)
Q Consensus 168 --------------~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~a 233 (305)
..++..|..+++||++.+.|.|..+|..|+++||. |++.++++|.+=... ..|-... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~--~gg~~~~----~ 174 (302)
T PRK08272 103 PWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTR--VWGVPAT----G 174 (302)
T ss_pred cccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchh--cccCChH----H
Confidence 12455667788999999999999999999999999 999999988642221 1121110 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 021957 234 NEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 234 kel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
. +....| .....+++-....|+++||+++||||+|+.
T Consensus 175 --~----------~~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~ 211 (302)
T PRK08272 175 --M----------WAYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVP 211 (302)
T ss_pred --H----------HHHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecC
Confidence 1 011122 233334443334579999999999999985
No 109
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=2.2e-05 Score=74.81 Aligned_cols=140 Identities=16% Similarity=0.059 Sum_probs=92.0
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH-------------------H-------
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA-------------------G------- 167 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------------g------- 167 (305)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. .
T Consensus 18 ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (298)
T PRK12478 18 ITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTAR 97 (298)
T ss_pred EEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhh
Confidence 556544 677888888888888776655565555321 23344321 0
Q ss_pred ----HHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCC-CccCCCcchHHHHHHHHHHHHH
Q 021957 168 ----MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLG-GAQGGQTDIDIQANEMLHHKAN 242 (305)
Q Consensus 168 ----~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~-g~~G~a~di~~~akel~~~k~~ 242 (305)
...+..|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-.... |... ... +.
T Consensus 98 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~~------~~----- 162 (298)
T PRK12478 98 ETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TGM------WL----- 162 (298)
T ss_pred hcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hhH------HH-----
Confidence 01344577788999999999999999999999999 9999999998744431 2211 000 00
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 243 LNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 243 i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.+.| .....+++-....|+|+||+++||||+|+..
T Consensus 163 ------~~vG--~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 163 ------YRLS--LAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred ------HHhh--HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 0112 3333444433456799999999999999863
No 110
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=3.8e-05 Score=71.32 Aligned_cols=134 Identities=15% Similarity=0.123 Sum_probs=81.9
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC------CcHHH------------------HHHHHHHHHhcCCCeEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG------GSVTA------------------GMAIFDTMKHIRPDVSTV 184 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a------------------g~aIyd~I~~~k~pV~Tv 184 (305)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...++..|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 566777777777776665544444444 3334 33221 122445566778899999
Q ss_pred EecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh-hc
Q 021957 185 CVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD-TD 263 (305)
Q Consensus 185 v~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~-~~ 263 (305)
+.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-. .+.. + + + .....++ +.
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~--~~l~--~-l--------~--~~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGV---APAIISL--TLLP--R-L--------S--PRAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCC---CCCcccc--hhHH--h-h--------h--HHHHHHHHHh
Confidence 999999999999999999 999999988763332221 1111100 0100 0 0 0 0011222 34
Q ss_pred CCcccCHHHHHHcCCcceecCC
Q 021957 264 RDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 264 rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+ ..++++||+++||||+|.++
T Consensus 168 g-~~~~a~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 168 G-EKFGAAEAARIGLVTAAADD 188 (260)
T ss_pred C-CccCHHHHHHcCCcccchHH
Confidence 4 34699999999999999754
No 111
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.14 E-value=4.5e-05 Score=80.18 Aligned_cols=129 Identities=19% Similarity=0.336 Sum_probs=85.5
Q ss_pred ceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH-------HHHHHHHHHH---hcCCCeEEEEecccchHHHHH
Q 021957 127 GAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT-------AGMAIFDTMK---HIRPDVSTVCVGLAASMGAFL 196 (305)
Q Consensus 127 g~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~I~---~~k~pV~Tvv~G~AASaga~I 196 (305)
|.++++-+....+-+...+. -.-||+-.|||||..+. .+.+|+..+. ....|+++++.|-|+|+|++.
T Consensus 221 G~~~peGyRKAlRlmkLAek--fgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA 298 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALA 298 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence 33444445554443333332 35699999999997652 3455665555 556899999999999999999
Q ss_pred HhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHc
Q 021957 197 LSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDY 276 (305)
Q Consensus 197 laaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~ey 276 (305)
++.++. .+|.|++.+.+-.|-+. ..++. ++.+...+..+ -.-+||++-+++
T Consensus 299 ~g~aD~--VlMle~A~~sVisPEga------------AsILw--------------kd~~~A~eAAe-~lkiTa~dL~~l 349 (762)
T PLN03229 299 IGCANK--LLMLENAVFYVASPEAC------------AAILW--------------KSAKAAPKAAE-KLRITAQELCRL 349 (762)
T ss_pred hhcCCE--EEEecCCeEEecCHHHH------------HHHHh--------------cCcccHHHHHH-HcCCCHHHHHhC
Confidence 999988 99999999887666321 11221 01111111122 234699999999
Q ss_pred CCcceecCCc
Q 021957 277 GLIDGVIMNP 286 (305)
Q Consensus 277 GLID~Ii~~~ 286 (305)
|+||+|+..+
T Consensus 350 GiiD~IIpEp 359 (762)
T PLN03229 350 QIADGIIPEP 359 (762)
T ss_pred CCCeeeccCC
Confidence 9999999754
No 112
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.14 E-value=2.6e-05 Score=72.29 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=92.9
Q ss_pred eeCHhHHHHHHHHHHHhhhcCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhcCCCeEEEEec
Q 021957 128 AVDDDMANIIVAQLLYLDAIDPHKDIVIYV----NSPGGSVTAG----------------MAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 128 ~Idd~~a~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~ag----------------~aIyd~I~~~k~pV~Tvv~G 187 (305)
.++.++...+.+.|..++.++..+.|+|.= =|-|+++..- ..+...|..+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 477888888888888888765555444432 2334555431 12566888889999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCceEEEeccCCCcc-CCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh-hcCC
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQ-GGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD-TDRD 265 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~-G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~-~~rd 265 (305)
.|..+|.-|+++||. |++.++++|.+.....|.. |... ..+ +.+..|.. ...++ +.+
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~------~~~----------l~r~~G~~--~a~~l~ltg- 166 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGG------TQR----------LPRLLGRG--RAKELLLTG- 166 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcH------HHH----------HHHhcCHH--HHHHHHHcC-
Confidence 999999999999999 9999999999876644322 1110 001 11112211 11222 344
Q ss_pred cccCHHHHHHcCCcceecCCc
Q 021957 266 YFMSPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~~ 286 (305)
..++++||+++||||+++...
T Consensus 167 ~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 167 EPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred CcCCHHHHHHcCCcCeeeCCH
Confidence 456999999999999998754
No 113
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.05 E-value=5.7e-05 Score=77.95 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=87.8
Q ss_pred eCHhHHHHHHHHHHHhh-hcCCCCCEEEEEe-----CCCCcHHHH---------------H----HHHHHHHhcCCCeEE
Q 021957 129 VDDDMANIIVAQLLYLD-AIDPHKDIVIYVN-----SPGGSVTAG---------------M----AIFDTMKHIRPDVST 183 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~ag---------------~----aIyd~I~~~k~pV~T 183 (305)
++.++...+.+.+..++ .++..+.|+|.=+ |.|+++... . .+.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67778888888888877 4555566666432 455654321 0 144566778899999
Q ss_pred EEecccchHHHHHHhcCCCCcEEecCC--ceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 184 VCVGLAASMGAFLLSAGAKGKRYSLPN--SRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 184 vv~G~AASaga~IlaaG~kgkR~a~Pn--S~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
.+.|.|..+|..|+++||. |++.++ ++|.+-... ..|-..+...... +...+........++
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~--~~Gl~P~~gg~~r------------l~~~~~vg~~~A~~l 192 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVP--LLGVLPGTGGLTR------------VTDKRKVRRDLADIF 192 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchh--ccccCCCcchHHH------------hhhhhhcCHHHHHHH
Confidence 9999999999999999999 999987 666652221 0111111110000 111112233333333
Q ss_pred hcCCcccCHHHHHHcCCcceecC
Q 021957 262 TDRDYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 262 ~~rd~~lta~EA~eyGLID~Ii~ 284 (305)
+-....|+++||+++||||+|+.
T Consensus 193 lltG~~i~AeeA~~~GLVd~vv~ 215 (550)
T PRK08184 193 CTIEEGVRGKRAVDWRLVDEVVK 215 (550)
T ss_pred HHhCCcccHHHHHHcCCccEeeC
Confidence 32334679999999999999986
No 114
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.04 E-value=5.1e-05 Score=73.73 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=85.2
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhcCCCeEEE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTAG-------------------MAIFDTMKHIRPDVSTV 184 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~I~~~k~pV~Tv 184 (305)
++.++.+.+.+.+..++.++..+.|+|.=. |-|+++..- ..++..|..+++||++.
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 106 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIAL 106 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677777888888777776554454444221 223443210 12345667788999999
Q ss_pred EecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCc---cCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 185 CVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGA---QGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 185 v~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~---~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
+.|.|..+|.-|+++||. |++.++++|++-....|. .|...-+. +..| ....+-.
T Consensus 107 VnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~------------------r~~g--~~a~~ll 164 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLS------------------RAPG--ALGTYLA 164 (342)
T ss_pred EcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEeh------------------hccc--HHHHHHH
Confidence 999999999999999999 999999998864433222 12111110 0011 0011112
Q ss_pred hcCCcccCHHHHHHcCCcceecCC
Q 021957 262 TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 262 ~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+.+ ..++|+||+++||||+|+..
T Consensus 165 ltG-~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 165 LTG-ARISAADALYAGLADHFVPS 187 (342)
T ss_pred HcC-CCCCHHHHHHcCCcceecCH
Confidence 344 34699999999999999864
No 115
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.03 E-value=0.0001 Score=68.64 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=83.6
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCC----------cHHHHHHHHHHHHhc---CCCeEEEEecccchHHHH
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGG----------SVTAGMAIFDTMKHI---RPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~ag~aIyd~I~~~---k~pV~Tvv~G~AASaga~ 195 (305)
++-..+......+...-.++..-||+..+|+||= ...+.-.+...+... +.|+.+++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 5544455555555443222356899999999993 344444444555544 489999999999999888
Q ss_pred HHhc-CCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC--CcccCHHH
Q 021957 196 LLSA-GAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDR--DYFMSPKE 272 (305)
Q Consensus 196 Ilaa-G~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~r--d~~lta~E 272 (305)
.+.. ++. .+|.|++.+..-.|.+ +..+. .++.++.++..+. ..-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~------------aa~I~--------------~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLES------------MARVT--------------KRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHH------------HHHHH--------------ccCHhHHHHHHHhhhhhccCHHH
Confidence 7753 555 9999999988655521 11111 1233333333222 23457888
Q ss_pred HHHcCCcceecCCc
Q 021957 273 AKDYGLIDGVIMNP 286 (305)
Q Consensus 273 A~eyGLID~Ii~~~ 286 (305)
+.+.|+||+|+...
T Consensus 177 ~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 177 FVKLGGVHALLDVA 190 (238)
T ss_pred HHhCCCccEEeCCC
Confidence 99999999999854
No 116
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.02 E-value=0.00014 Score=72.47 Aligned_cols=145 Identities=12% Similarity=0.004 Sum_probs=94.8
Q ss_pred cEEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH------------H----HHH---H
Q 021957 121 RIIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG------------M----AIF---D 172 (305)
Q Consensus 121 RII~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag------------~----aIy---d 172 (305)
++|.|+-+ ++.++.+.+.+.|..++.++..+.|+|.=+ |-||++.+. . .+| .
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 57788876 888899999999998887776665555422 345665321 1 122 2
Q ss_pred HHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Q 021957 173 TMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTG 252 (305)
Q Consensus 173 ~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG 252 (305)
.|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|. ..++.... .+.+ ..|
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl---~PdvG~s~-~L~r-----------l~g 195 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGF---HPDAGASY-YLSR-----------LPG 195 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCC---CCCccHHH-HHHH-----------hcC
Confidence 345677899999999999999999999998 999999988764443332 12221100 0111 111
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 253 QSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 253 ~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
..-. .-.+.+ ..|+++||+++||+|+++..
T Consensus 196 ~~g~--~L~LTG-~~i~a~eA~~~GLa~~~v~~ 225 (407)
T PLN02851 196 YLGE--YLALTG-QKLNGVEMIACGLATHYCLN 225 (407)
T ss_pred HHHH--HHHHhC-CcCCHHHHHHCCCceeecCH
Confidence 1000 112344 35699999999999999864
No 117
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.99 E-value=0.00013 Score=72.61 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=94.5
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH------------H----H---HHHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG------------M----A---IFDT 173 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag------------~----a---Iyd~ 173 (305)
+|.|+-| ++.++...+.+.|..++.++..+.|+|.=+ |-||++.+- . . +...
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 5667666 788888888888888887766665555422 556776421 0 1 2234
Q ss_pred HHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Q 021957 174 MKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQ 253 (305)
Q Consensus 174 I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~ 253 (305)
|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|. ..+..- ... +.+..|.
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl---~Pd~G~--s~~----------L~rl~G~ 191 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGF---HPDAGA--SFN----------LSHLPGR 191 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCC---CCCccH--HHH----------HHHhhhH
Confidence 67788999999999999999999999999 999999998764433222 222211 011 1111221
Q ss_pred CHHHHHhh-hcCCcccCHHHHHHcCCcceecCC
Q 021957 254 SLEKINQD-TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 254 s~e~I~~~-~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
.-..+ +.+ ..|+++||+++||+|+++..
T Consensus 192 ---~a~~L~LTG-~~i~A~eA~~~GLv~~vVp~ 220 (401)
T PLN02157 192 ---LGEYLGLTG-LKLSGAEMLACGLATHYIRS 220 (401)
T ss_pred ---HHHHHHHcC-CcCCHHHHHHcCCceEEeCH
Confidence 11122 344 46799999999999999864
No 118
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.96 E-value=0.00013 Score=77.18 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=88.5
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV-----NSPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++...+.+.|..++.++..+.|+|.- =|-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67778888888888887665555555432 134455432 233566788888999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCC--ceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPN--SRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD 265 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~Pn--S~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd 265 (305)
.|.++|.-|+++||. |++.++ ++|++-....|.. .+..-.. . +.+..|. ....+++-..
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~---p~~g~~~--~----------L~r~vG~--~~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLL---PGSGGTQ--R----------LPRLIGV--STALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCC---CCccHHH--H----------HHHhcCH--HHHHHHHHcC
Confidence 999999999999999 999987 4555544332321 1100000 0 1111222 2223333334
Q ss_pred cccCHHHHHHcCCcceecCC
Q 021957 266 YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~ 285 (305)
..++++||+++||||+|+..
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~ 186 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQ 186 (699)
T ss_pred CcCCHHHHHhCCCCcEecCh
Confidence 55799999999999999864
No 119
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.94 E-value=0.00012 Score=75.43 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=85.9
Q ss_pred eCHhHHHHHHHHHHHhh-hcCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhcCCCeEE
Q 021957 129 VDDDMANIIVAQLLYLD-AIDPHKDIVIYVN-----SPGGSVTAG-------------------MAIFDTMKHIRPDVST 183 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~I~~~k~pV~T 183 (305)
++.++.+.+.+.|..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56777778888888777 4444555555432 556665421 1244566778899999
Q ss_pred EEecccchHHHHHHhcCCCCcEEecCC--ceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 021957 184 VCVGLAASMGAFLLSAGAKGKRYSLPN--SRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQD 261 (305)
Q Consensus 184 vv~G~AASaga~IlaaG~kgkR~a~Pn--S~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~ 261 (305)
.+.|.|..+|.-|+++||. |++.++ ++|.+ |.....|-.....- +.. + ............++
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~--pEv~~lGl~P~~gg----~~~----l----~~~~~vg~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSL--PEVPLLGVLPGTGG----LTR----V----TDKRRVRRDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc--cchhccCcCCccch----hhh----c----cccchhCHHHHHHH
Confidence 9999999999999999999 999986 56654 32210111111100 000 0 00001122222223
Q ss_pred -hcCCcccCHHHHHHcCCcceecCC
Q 021957 262 -TDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 262 -~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+.+ .-|+++||+++||||+|+..
T Consensus 189 lltG-~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 189 CTIE-EGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred HHcC-CCccHHHHHHcCCceEEeCh
Confidence 333 35799999999999999864
No 120
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.94 E-value=0.00019 Score=70.81 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=91.3
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHH----------H----H---HHHHHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAG----------M----A---IFDTMK 175 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag----------~----a---Iyd~I~ 175 (305)
+|.|+-+ ++.++...+.+.|..++.++..+.|+|.=+ |-||++... . . +...|.
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 102 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIH 102 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 4667665 788888888888888887665555554211 234554321 0 1 123466
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|. ..+.... .++ .+..|. .
T Consensus 103 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl---~p~~g~~--~~L----------~rl~g~-~ 164 (379)
T PLN02874 103 TYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGF---HTDCGFS--YIL----------SRLPGH-L 164 (379)
T ss_pred hCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCc---CCChhHH--HHH----------HhhhHH-H
Confidence 778999999999999999999999999 999999998764433332 1122111 011 111110 0
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...-.+.+. .++++||+++||||+|+..
T Consensus 165 -a~~l~ltG~-~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 165 -GEYLALTGA-RLNGKEMVACGLATHFVPS 192 (379)
T ss_pred -HHHHHHcCC-cccHHHHHHcCCccEEeCH
Confidence 001124443 5799999999999999863
No 121
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.91 E-value=0.00022 Score=70.53 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHHHH-------------------HHHHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTAGM-------------------AIFDT 173 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~ag~-------------------aIyd~ 173 (305)
+|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-||++.... .+...
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~ 100 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV 100 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 4666665 778888999999988877665665555322 3356664311 12235
Q ss_pred HHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Q 021957 174 MKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQ 253 (305)
Q Consensus 174 I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~ 253 (305)
|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+=....|. ..+..-.. -+.+ +.... +
T Consensus 101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl---~Pd~G~s~-~L~r----l~G~~----~- 165 (381)
T PLN02988 101 MATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGL---FPDVGASY-FLSR----LPGFF----G- 165 (381)
T ss_pred HHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCc---CCCccHHH-HHHH----HHHHH----H-
Confidence 66788999999999999999999999999 999999988753332222 22221100 0111 11110 0
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 254 SLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 254 s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
. .-.+.+ ..++++||++.||+|+++..
T Consensus 166 ---~-~l~LTG-~~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 166 ---E-YVGLTG-ARLDGAEMLACGLATHFVPS 192 (381)
T ss_pred ---H-HHHHcC-CCCCHHHHHHcCCceEecCH
Confidence 0 112333 45799999999999999864
No 122
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.91 E-value=0.00021 Score=75.73 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=92.8
Q ss_pred EEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHH
Q 021957 123 IRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------------GMAIFDTMK 175 (305)
Q Consensus 123 I~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~I~ 175 (305)
|.|+-| ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...+++.|.
T Consensus 20 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (715)
T PRK11730 20 LVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLE 99 (715)
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 555543 677888888888888876655555555321 33454422 112455677
Q ss_pred hcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021957 176 HIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 255 (305)
Q Consensus 176 ~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~ 255 (305)
.+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. .+..-... + .+..| .
T Consensus 100 ~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~---p~~g~~~~-L-----------~rlvG--~ 160 (715)
T PRK11730 100 DLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIM---PGFGGTVR-L-----------PRLIG--A 160 (715)
T ss_pred cCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchHHHH-H-----------HHhcC--H
Confidence 788999999999999999999999999 9999999988644332211 11110000 1 11123 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 256 EKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 256 e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
....+++-....++|+||+++||||+|+..
T Consensus 161 ~~A~~llltG~~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 161 DNALEWIAAGKDVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCCeEecCH
Confidence 222333333345799999999999999864
No 123
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.90 E-value=0.00027 Score=75.00 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=93.8
Q ss_pred EEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHH
Q 021957 122 IIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN----SPGGSVTA------------------GMAIFDTM 174 (305)
Q Consensus 122 II~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~I 174 (305)
+|.|+.+ ++.++...+.+.|..++.++..+.|+|.=+ |-|+++.. +..+++.|
T Consensus 19 ~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (714)
T TIGR02437 19 ELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKL 98 (714)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3555544 677888888888888877666665555322 23344321 23466778
Q ss_pred HhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021957 175 KHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQS 254 (305)
Q Consensus 175 ~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s 254 (305)
..+++||++.+.|.|.++|.-|+++||. |++.++++|++=....|.. ....-.. .+ .+..|..
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~---Pg~Ggt~-rL-----------~rliG~~ 161 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIM---PGFGGTV-RL-----------PRVIGAD 161 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCC---CCccHHH-HH-----------HHHhCHH
Confidence 8888999999999999999999999999 9999999988744332221 1110000 01 1111222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 255 LEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 255 ~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
...+++-....++++||+++||||+|+..
T Consensus 162 --~A~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 162 --NALEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred --HHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 22233323345799999999999999853
No 124
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.85 E-value=0.00036 Score=73.96 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=88.4
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCeEEEEec
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA----------------GMAIFDTMKHIRPDVSTVCVG 187 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~k~pV~Tvv~G 187 (305)
++.++.+.+.+.+..++.++..+.|+|.=. |-|+++.. ...+++.|..++.||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677788888888888876655555544311 33444421 123567788888999999999
Q ss_pred ccchHHHHHHhcCCCCcEEecCCc--eEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 021957 188 LAASMGAFLLSAGAKGKRYSLPNS--RIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRD 265 (305)
Q Consensus 188 ~AASaga~IlaaG~kgkR~a~PnS--~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd 265 (305)
.|..+|.-|+++||. |++.+++ +|++.....|.. ....- .. .+.+..|. ....+++-..
T Consensus 111 ~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~---p~~gg-~~-----------~L~r~vG~--~~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLL---PGSGG-TQ-----------RLPRLIGV--STALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCC---CCccH-Hh-----------HHHhhcCH--HHHHHHHHhC
Confidence 999999999999999 9999985 566544433321 11100 00 01122232 2223333333
Q ss_pred cccCHHHHHHcCCcceecCC
Q 021957 266 YFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 266 ~~lta~EA~eyGLID~Ii~~ 285 (305)
..++++||+++||||+|+..
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred CcCCHHHHHHCCCCcEecCh
Confidence 45799999999999999864
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.78 E-value=0.00048 Score=73.40 Aligned_cols=137 Identities=14% Similarity=0.146 Sum_probs=86.5
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCC------CCcHHH----------------HHHHHHHHHhcCCCeEEEEe
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSP------GGSVTA----------------GMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~a----------------g~aIyd~I~~~k~pV~Tvv~ 186 (305)
++.++...+.+.|..++.++..+.++| +..- |+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 566777888888877776554444333 2333 344321 23466778888999999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCc--eEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNS--RIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDR 264 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS--~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~r 264 (305)
|.|..+|.-|+++||. |++.+++ ++++.....|.. .+..-.. ++ .+..|.. ...+++-.
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~---Pg~Ggt~--------rL----prliG~~--~A~~l~lt 177 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLL---PGAGGTQ--------RL----PKLTGVP--AALDMMLT 177 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCC---CCccHhh--------hH----HHhhCHH--HHHHHHHc
Confidence 9999999999999999 9999985 566544322211 0000000 01 1112221 22233333
Q ss_pred CcccCHHHHHHcCCcceecCC
Q 021957 265 DYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 265 d~~lta~EA~eyGLID~Ii~~ 285 (305)
...++++||+++||||+|+..
T Consensus 178 G~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 178 GKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CCcCCHHHHHHCCCCeEecCC
Confidence 456799999999999999975
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.64 E-value=0.0012 Score=68.37 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=87.0
Q ss_pred eCHhHHHHHHHHHHHhhhc-CCCCCEEEEEe-----CCCCcHH-----------HH----HHHHHHHHhcCCCeEEEE-e
Q 021957 129 VDDDMANIIVAQLLYLDAI-DPHKDIVIYVN-----SPGGSVT-----------AG----MAIFDTMKHIRPDVSTVC-V 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~-d~~k~I~L~IN-----SPGGsV~-----------ag----~aIyd~I~~~k~pV~Tvv-~ 186 (305)
++.++...+.+.+..++.+ +..+.|+|.=. |-|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6677777888888888744 33344433221 2233331 10 124567778889999999 8
Q ss_pred cccchHH-HHHHhcCCCCcEEe-------cCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHc-CCCHHH
Q 021957 187 GLAASMG-AFLLSAGAKGKRYS-------LPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHT-GQSLEK 257 (305)
Q Consensus 187 G~AASag-a~IlaaG~kgkR~a-------~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~T-G~s~e~ 257 (305)
|.|..+| .-|+++||. |++ .++++|.+-....|......-. . .+.+.. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~---~------------~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGL---S------------RLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcH---H------------HHHHHhcCchhHH
Confidence 9999999 999999999 999 8999988655443322111000 0 012333 443332
Q ss_pred HHh-hhcCCcccCHHHHHHcCCcceecCC
Q 021957 258 INQ-DTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 258 I~~-~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
-.+ ++.+ ..++++||+++|||++|...
T Consensus 438 ~~~~~ltg-~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 438 AAVRDKIG-QALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred HHHHHHhC-CCCCHHHHHHcCCcccccCc
Confidence 211 2333 45799999999999999764
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.55 E-value=0.00074 Score=69.25 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=69.9
Q ss_pred cceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCC----------cHHHHHHHHHHHHhcCCCeEEEEecccchHHHH
Q 021957 126 GGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGG----------SVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 126 gg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~ 195 (305)
+|.++...++.+.+.+...+. ..-+|+..+||||- .+..+-.+..++.....|..+++.|.++++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 467888888887776554443 35799999999994 455666677777777899999999999998777
Q ss_pred HHhc----CCCCcEEecCCceEEEeccCC
Q 021957 196 LLSA----GAKGKRYSLPNSRIMIHQPLG 220 (305)
Q Consensus 196 Ilaa----G~kgkR~a~PnS~imiHqP~~ 220 (305)
.+++ ++. .+|.|++++.+-.|.+
T Consensus 406 am~~~~~~~d~--~~a~p~a~~~v~~pe~ 432 (512)
T TIGR01117 406 AMCSKHLGADQ--VYAWPTAEIAVMGPAG 432 (512)
T ss_pred HhccccCCCCE--EEEcCCCeEeecCHHH
Confidence 7654 554 8999999999877743
No 128
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.35 E-value=0.00042 Score=66.11 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=76.9
Q ss_pred CCCEEEEEeCCCCcH-------HHHHHHHHHHHh---cCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccC
Q 021957 150 HKDIVIYVNSPGGSV-------TAGMAIFDTMKH---IRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPL 219 (305)
Q Consensus 150 ~k~I~L~INSPGGsV-------~ag~aIyd~I~~---~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~ 219 (305)
.-+|+.+||+||-.. ..+.+|...+.. ++.||++++.|...|+|++-+..|++ .+|+.||.+.+-.|-
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 569999999999432 246677665554 57899999999999999999999998 899999999887774
Q ss_pred CCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCcc
Q 021957 220 GGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPL 287 (305)
Q Consensus 220 ~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~ 287 (305)
+- ++ ++ |++ +.+..+. .+. .-+|+.+-+++||||.|+..+.
T Consensus 228 G~----As--------IL-WkD---------~~ka~eA-Ae~----mkita~dLk~lgiID~II~Ep~ 268 (317)
T COG0825 228 GC----AS--------IL-WKD---------ASKAKEA-AEA----MKITAHDLKELGIIDGIIPEPL 268 (317)
T ss_pred hh----hh--------hh-hcC---------hhhhHHH-HHH----cCCCHHHHHhCCCcceeccCCC
Confidence 32 21 11 110 0011111 111 2258899999999999997643
No 129
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.25 E-value=0.0034 Score=64.97 Aligned_cols=139 Identities=15% Similarity=0.070 Sum_probs=84.2
Q ss_pred eCHhHHHHHHHHHHHhhh-cCCCCCEEEEEe-----CCCCcHH-----------HH----HHHHHHHHhcCCCeEEEEe-
Q 021957 129 VDDDMANIIVAQLLYLDA-IDPHKDIVIYVN-----SPGGSVT-----------AG----MAIFDTMKHIRPDVSTVCV- 186 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~-~d~~k~I~L~IN-----SPGGsV~-----------ag----~aIyd~I~~~k~pV~Tvv~- 186 (305)
++.++...+.+.+..++. ++..+.|+|.=. |-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 566777778777777765 334454444321 2234421 00 1234456667789999997
Q ss_pred cccchHH-HHHHhcCCCCcEEec-------CCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Q 021957 187 GLAASMG-AFLLSAGAKGKRYSL-------PNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYH-TGQSLEK 257 (305)
Q Consensus 187 G~AASag-a~IlaaG~kgkR~a~-------PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~-TG~s~e~ 257 (305)
|.|..+| .-|+++||. |++. ++++|++-....|......-. . + +.+. -|.....
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~---~--------~----L~r~~vG~~~A~ 441 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGL---S--------R----LARRFYGEPDPL 441 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcH---H--------H----hHHHhcChHHHH
Confidence 9999999 999999999 9999 999988755433321100000 0 0 1111 1332211
Q ss_pred HHh-hhcCCcccCHHHHHHcCCcceecCC
Q 021957 258 INQ-DTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 258 I~~-~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
-.. .+.+ ..++++||+++||||+|+..
T Consensus 442 ~~~l~~tg-~~i~A~eA~~~GLv~~vv~~ 469 (550)
T PRK08184 442 AAVRAKIG-QPLDADAAEELGLVTAAPDD 469 (550)
T ss_pred HHHHHHhC-CcCCHHHHHHcCCcccccCh
Confidence 111 1233 45799999999999999864
No 130
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.07 E-value=0.0043 Score=64.48 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=67.8
Q ss_pred cceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCeEEEEecccchHHHH
Q 021957 126 GGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG----------GSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 126 gg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~ 195 (305)
+|.++.+.++...+-+...+. -.-+|+..+|+|| |.+..+-.+..++.....|+.|++.|.|+++|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 355787777776555444443 3568999999999 4556667777777788899999999999999999
Q ss_pred HHhcC--CCCcEEecCCceEEEecc
Q 021957 196 LLSAG--AKGKRYSLPNSRIMIHQP 218 (305)
Q Consensus 196 IlaaG--~kgkR~a~PnS~imiHqP 218 (305)
.+++. .....+|.|++++.+-.|
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~ 481 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGG 481 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCH
Confidence 88743 223378889999886655
No 131
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.03 E-value=0.0061 Score=57.99 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=69.5
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcC---CCCCEEEEEeCCCCcHHHHH-------HHHHHHHhcC--CCeEEEEecc--c
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAID---PHKDIVIYVNSPGGSVTAGM-------AIFDTMKHIR--PDVSTVCVGL--A 189 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d---~~k~I~L~INSPGGsV~ag~-------aIyd~I~~~k--~pV~Tvv~G~--A 189 (305)
|.+|.+.+.....+...+.....++ ..-++++.++|.|+.+..+. .|+..+..++ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 5678888888888777665444322 22489999999998876533 2343444444 6999999999 7
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEecc
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQP 218 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP 218 (305)
+++++++++.++. .+|.+++++++--|
T Consensus 150 ~GG~a~~a~l~D~--vim~~~a~i~~aGP 176 (274)
T TIGR03133 150 FGGMGIAAGLCSY--LIMTEEGRLGLSGP 176 (274)
T ss_pred chHHHHHHhcCCE--EEEeCCcEEeccCH
Confidence 8999999999998 99999999987666
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.98 E-value=0.014 Score=55.99 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=65.7
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHH-------HHHHHH---hcCCCeEEEEecccchHH
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMA-------IFDTMK---HIRPDVSTVCVGLAASMG 193 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~a-------Iyd~I~---~~k~pV~Tvv~G~AASag 193 (305)
|++|.++....+.+.+.+...... .-|+++..+|+|.....+.. +...+. ....|..+++.|-++.++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 357778888888888766554432 46888899999987655542 222332 234799999999999887
Q ss_pred HHHHh-cCCCCcEEecCCceEEEecc
Q 021957 194 AFLLS-AGAKGKRYSLPNSRIMIHQP 218 (305)
Q Consensus 194 a~Ila-aG~kgkR~a~PnS~imiHqP 218 (305)
++.++ .++. ++|.|++.+++-.|
T Consensus 210 aas~a~~~D~--iia~p~A~ig~aGp 233 (292)
T PRK05654 210 SASFAMLGDI--IIAEPKALIGFAGP 233 (292)
T ss_pred HHHHHHcCCE--EEEecCcEEEecCH
Confidence 76655 4777 89999999997665
No 133
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.94 E-value=0.0035 Score=63.90 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=67.2
Q ss_pred ceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHH
Q 021957 127 GAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG----------GSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFL 196 (305)
Q Consensus 127 g~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~I 196 (305)
|.++.+.+....+-+...+.. .-||+..+|+|| |.+..+-.+.+++...+.|+.+++.|.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678888888877766555543 458999999999 67788999999999999999999999999988888
Q ss_pred HhcCCC--CcEEecCCceEEEecc
Q 021957 197 LSAGAK--GKRYSLPNSRIMIHQP 218 (305)
Q Consensus 197 laaG~k--gkR~a~PnS~imiHqP 218 (305)
+++... ...++.|++++.+..|
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~ 409 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGP 409 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-H
T ss_pred hcccccchhhhhhhhcceeeecCh
Confidence 777622 2388999999987666
No 134
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.86 E-value=0.016 Score=55.39 Aligned_cols=124 Identities=12% Similarity=0.129 Sum_probs=83.9
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHH-------HHHHH---hcCCCeEEEEecccchHH
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAI-------FDTMK---HIRPDVSTVCVGLAASMG 193 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aI-------yd~I~---~~k~pV~Tvv~G~AASag 193 (305)
|++|.+.....+.+.+.+..... ..-+|++.++|+|.....+... ...+. ....|..+++.|-++.++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALE--DNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 34677777888888776655443 2458999999999776554422 22222 234799999999999887
Q ss_pred HHHHh-cCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcccCHHH
Q 021957 194 AFLLS-AGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKE 272 (305)
Q Consensus 194 a~Ila-aG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~lta~E 272 (305)
++.++ .++. ++|.|++.+++..|. + +.+.+|. .+..+ +-+++-
T Consensus 209 aas~a~~~D~--iia~p~A~ig~aGpr----------------V----------ie~ti~e-------~lpe~-~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGDL--NIAEPKALIGFAGPR----------------V----------IEQTVRE-------KLPEG-FQTSEF 252 (285)
T ss_pred HHHHHhCCCE--EEEECCeEEEcCCHH----------------H----------HHHHhcC-------ccchh-cCCHHH
Confidence 77664 7887 999999999876552 0 1112221 11122 447888
Q ss_pred HHHcCCcceecCC
Q 021957 273 AKDYGLIDGVIMN 285 (305)
Q Consensus 273 A~eyGLID~Ii~~ 285 (305)
+.+.|+||.|+..
T Consensus 253 ~~~~G~vD~iv~~ 265 (285)
T TIGR00515 253 LLEHGAIDMIVHR 265 (285)
T ss_pred HHhCCCCcEEECc
Confidence 8899999999975
No 135
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.05 E-value=0.0032 Score=58.71 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHH
Q 021957 166 AGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNG 245 (305)
Q Consensus 166 ag~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~ 245 (305)
....-|..|..+++||++-+-|.|-.+|.=|..||+. ||+...+.|-+...-. |-+.|+.. +. ++-+
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDv---glaADvGT----L~----Rlpk 180 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDV---GLAADVGT----LN----RLPK 180 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeee---ehhhchhh----Hh----hhhH
Confidence 3444567788888999999999999999999999999 9999999998776533 23334331 22 2222
Q ss_pred HHHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccCCC
Q 021957 246 YLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQP 292 (305)
Q Consensus 246 ~la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L~~ 292 (305)
++ | +...+.++.-..+-|+|.||++.||+-+|..+..+.|..
T Consensus 181 vV----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~ 222 (292)
T KOG1681|consen 181 VV----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNG 222 (292)
T ss_pred Hh----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhh
Confidence 22 2 112223332223446999999999999999987766653
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.04 E-value=0.04 Score=53.19 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=70.3
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCC----CCCEEEEEeCCCCcHHHHH-------HHHHHHHhcC--CCeEEEEecc--
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDP----HKDIVIYVNSPGGSVTAGM-------AIFDTMKHIR--PDVSTVCVGL-- 188 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~----~k~I~L~INSPGGsV~ag~-------aIyd~I~~~k--~pV~Tvv~G~-- 188 (305)
|++|.+.+.....+...+.... +.. -.++++.++|.|+....+. .|+..+..++ .|+++++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~-~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAA-EDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHH-HhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 5688888888888877655433 332 2589999999998865332 3444444444 6999999998
Q ss_pred cchHHHHHHhcCCCCcEEecCCceEEEecc
Q 021957 189 AASMGAFLLSAGAKGKRYSLPNSRIMIHQP 218 (305)
Q Consensus 189 AASaga~IlaaG~kgkR~a~PnS~imiHqP 218 (305)
|+.+++++++.||. ++|.+++++++--|
T Consensus 158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP 185 (301)
T PRK07189 158 CFGGMGIAAALCSY--LIVSEEGRLGLSGP 185 (301)
T ss_pred CcHHHHHHHhcCCE--EEEECCcEEeccCH
Confidence 99999999999998 99999999998777
No 137
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.02 E-value=0.024 Score=52.64 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCEEEEEeCCCC--------------------cHHHHHHHHHHHHhcCCCeEEEEecccchH
Q 021957 133 MANIIVAQLLYLDAIDPHKDIVIYVNSPGG--------------------SVTAGMAIFDTMKHIRPDVSTVCVGLAASM 192 (305)
Q Consensus 133 ~a~~iiaqLl~L~~~d~~k~I~L~INSPGG--------------------sV~ag~aIyd~I~~~k~pV~Tvv~G~AASa 192 (305)
..+.+...|..+..++..+-|.|+=-+||= .|..-..+++.|..++.||++-+.|.|-.+
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 445566667778888778878887778882 245667788889999999999999999999
Q ss_pred HHHHHhcCCCCcEEecCCceEEEeccCC----CccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCccc
Q 021957 193 GAFLLSAGAKGKRYSLPNSRIMIHQPLG----GAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFM 268 (305)
Q Consensus 193 ga~IlaaG~kgkR~a~PnS~imiHqP~~----g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~~l 268 (305)
|-=++++||. |.+..++.+++-.-.. |..|. +.+ -.++ |.. .-++++-..+.|
T Consensus 139 GLElALACDi--Rva~s~akmGLvET~laiiPGaGGt-QRL--------------pR~v----g~a--laKELIftarvl 195 (291)
T KOG1679|consen 139 GLELALACDI--RVAASSAKMGLVETKLAIIPGAGGT-QRL--------------PRIV----GVA--LAKELIFTARVL 195 (291)
T ss_pred chhhhhhccc--eehhhhccccccccceeeecCCCcc-chh--------------HHHH----hHH--HHHhHhhhheec
Confidence 9999999999 9999999998765421 22331 111 1111 111 112333334567
Q ss_pred CHHHHHHcCCcceecCCc
Q 021957 269 SPKEAKDYGLIDGVIMNP 286 (305)
Q Consensus 269 ta~EA~eyGLID~Ii~~~ 286 (305)
++.||.+.|||..+++-.
T Consensus 196 ~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred cchhHHhcchHHHHHhcC
Confidence 999999999999988643
No 138
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.20 E-value=0.29 Score=47.22 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=63.6
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHH----HHHHH---HH----hcCCCeEEEEecccchH
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGM----AIFDT---MK----HIRPDVSTVCVGLAASM 192 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~----aIyd~---I~----~~k~pV~Tvv~G~AASa 192 (305)
|++|.+.....+.+.+.+..... ..-++++...|-|+.+..+. ++..+ +. .-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~--~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATN--ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH--cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 35666666777887776554433 24689999999997754433 22222 22 33469999999998888
Q ss_pred HHHHHhc-CCCCcEEecCCceEEEecc
Q 021957 193 GAFLLSA-GAKGKRYSLPNSRIMIHQP 218 (305)
Q Consensus 193 ga~Ilaa-G~kgkR~a~PnS~imiHqP 218 (305)
+++.++. ||. +++.|++.+++.-|
T Consensus 222 ~aas~a~l~Di--iiae~~A~IgfAGP 246 (296)
T CHL00174 222 VTASFGMLGDI--IIAEPNAYIAFAGK 246 (296)
T ss_pred HHHHHHHcccE--EEEeCCeEEEeeCH
Confidence 8887664 988 88999999987766
No 139
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.43 E-value=0.11 Score=53.46 Aligned_cols=91 Identities=23% Similarity=0.337 Sum_probs=67.6
Q ss_pred cceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCeEEEEecccchHHHH
Q 021957 126 GGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG----------GSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 126 gg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~ 195 (305)
+|.|+.+.++.-.+.+ .+-.. -.=+|.+..|.|| |-+.-|-.|..++-..+.|..|++.+.++.+|++
T Consensus 337 ~G~l~~~sa~KaArFI-~~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKAARFI-RLCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHHHHHH-Hhhhc-cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 6778888877644433 33322 2458999999999 6677888999999999999999999999999998
Q ss_pred HHhcCCCC--cEEecCCceEEEecc
Q 021957 196 LLSAGAKG--KRYSLPNSRIMIHQP 218 (305)
Q Consensus 196 IlaaG~kg--kR~a~PnS~imiHqP 218 (305)
.+++..-+ ..|+-|++++.+-.|
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~ 439 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGP 439 (526)
T ss_pred eecCccCCCceeEecCcceeeecCH
Confidence 88764332 245667777665444
No 140
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.15 E-value=0.64 Score=43.45 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=72.6
Q ss_pred hcCCCCCEEEEEeCCC---CcHHHHHHHH----------HHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCce
Q 021957 146 AIDPHKDIVIYVNSPG---GSVTAGMAIF----------DTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSR 212 (305)
Q Consensus 146 ~~d~~k~I~L~INSPG---GsV~ag~aIy----------d~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~ 212 (305)
.+.+..+|.+.+++|| |.-.+.+.|. +.-|...-||.+.+.|.|.|+| ||+.+--....+++|.+
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGa-FLA~GlqA~rl~AL~ga- 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGA-FLAHGLQANRLIALPGA- 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHH-HHHHHHHhcchhcCCCC-
Confidence 4567899999999999 4444444444 4445555699999999999988 44443222338888844
Q ss_pred EEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc--ccCHHHHHHcCCcceecC
Q 021957 213 IMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY--FMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 213 imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~~TG~s~e~I~~~~~rd~--~lta~EA~eyGLID~Ii~ 284 (305)
++|-. +.+ ..++-|.++.|+++++.+..- -+..+-=..+|.+++++.
T Consensus 138 -~i~vM---------~~~---------------s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 138 -MIHVM---------GKP---------------SAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred -eeecC---------ChH---------------HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 44432 110 124557788888887765432 234555577888888876
No 141
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=93.90 E-value=0.16 Score=47.37 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC-------Cc----------H-------HHHHHHHHHHHhcCCCeEEEEe
Q 021957 131 DDMANIIVAQLLYLDAIDPHKDIVIYVNSPG-------GS----------V-------TAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 131 d~~a~~iiaqLl~L~~~d~~k~I~L~INSPG-------Gs----------V-------~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
+.+...++..+.....++...-|.|.=|+-| |+ + -..+.+-..||.+++||++.+.
T Consensus 45 P~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~ 124 (282)
T COG0447 45 PKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVA 124 (282)
T ss_pred CccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEEe
Confidence 4456667777766665555555555545333 22 1 1345566788999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEecCCceEEEeccCCCcc-CCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHhhhcC
Q 021957 187 GLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQ-GGQTDIDIQANEMLHHKANLNGYLAYHTGQSL-EKINQDTDR 264 (305)
Q Consensus 187 G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~-G~a~di~~~akel~~~k~~i~~~la~~TG~s~-e~I~~~~~r 264 (305)
|.|..+|-++=.-|+- -.+..|++|+=..|..+.. |-.- +. ++++.-|+.. .+|.- +-
T Consensus 125 G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~G-----s~-----------ylar~VGqKkArEIwf-Lc- 184 (282)
T COG0447 125 GYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYG-----SS-----------YLARIVGQKKAREIWF-LC- 184 (282)
T ss_pred eEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCccc-----HH-----------HHHHHhhhhhhHHhhh-hh-
Confidence 9999999999999998 7899999998777765431 2111 11 1122223222 23332 22
Q ss_pred CcccCHHHHHHcCCcceecC
Q 021957 265 DYFMSPKEAKDYGLIDGVIM 284 (305)
Q Consensus 265 d~~lta~EA~eyGLID~Ii~ 284 (305)
+.++|+||++.|+|..|+.
T Consensus 185 -R~Y~A~eal~MGlVN~Vvp 203 (282)
T COG0447 185 -RQYDAEEALDMGLVNTVVP 203 (282)
T ss_pred -hhccHHHHHhcCceeeecc
Confidence 2359999999999998875
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=93.42 E-value=0.61 Score=48.78 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH---H------H-HHHHHHHHh-c--CCCeEEEEecccc
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT---A------G-MAIFDTMKH-I--RPDVSTVCVGLAA 190 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~---a------g-~aIyd~I~~-~--k~pV~Tvv~G~AA 190 (305)
+++|.+.....+.+.+.+.... + ..-+|+..++|+|+.+. . + -.|+..+.. + ..|.++++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~elA~-~-~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQEIAA-Q-CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH-H-cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 4678888888888877654433 2 24689999999998761 1 1 134444222 3 4699999999999
Q ss_pred hHHHHHHhcCCCCcEEec-CCceEEEecc
Q 021957 191 SMGAFLLSAGAKGKRYSL-PNSRIMIHQP 218 (305)
Q Consensus 191 Saga~IlaaG~kgkR~a~-PnS~imiHqP 218 (305)
++|+++.+.++. .+|. +++.+.+-.|
T Consensus 218 gGgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 999999888876 5554 6788888777
No 143
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=89.95 E-value=2.7 Score=39.09 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHH
Q 021957 167 GMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGY 246 (305)
Q Consensus 167 g~aIyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~ 246 (305)
...+.+.||.++.||.+-+.|.|+-+|.-|.++||. .++..++.|..-.-..|..-...-+. .++.+
T Consensus 114 c~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-laRav---------- 180 (287)
T KOG1682|consen 114 CTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-LARAV---------- 180 (287)
T ss_pred HHHHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-Hhhhc----------
Confidence 345567788888999999999999999999999987 77778877652111111111111111 11111
Q ss_pred HHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 021957 247 LAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 247 la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
+...-..++-...-.+++||+-.||+.+++..
T Consensus 181 -------pRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682|consen 181 -------PRKVAAYMLMTGLPITGEEALISGLVSKVVPA 212 (287)
T ss_pred -------chhHHHHHHHhCCCCchHHHHHhhhhhhcCCH
Confidence 11111122222234689999999999998864
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=89.33 E-value=2.7 Score=43.43 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=66.9
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHH-------HHH-HHHHh-cCCCeEEEEecccchHHH
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGM-------AIF-DTMKH-IRPDVSTVCVGLAASMGA 194 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~-------aIy-d~I~~-~k~pV~Tvv~G~AASaga 194 (305)
|++|.+.....+.++..+..... . .-+++..++|-|+.+..+. .++ ...+. -..|+++++.|-|+.+++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~-~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMK-M-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-c-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 56888888888888776554333 2 4689999999998864332 223 22222 236999999999999999
Q ss_pred HHHhcCCCCcEEecCCc-eEEEecc
Q 021957 195 FLLSAGAKGKRYSLPNS-RIMIHQP 218 (305)
Q Consensus 195 ~IlaaG~kgkR~a~PnS-~imiHqP 218 (305)
+.++.||. ++|.+++ .+++--|
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP 193 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGP 193 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecCh
Confidence 99999998 9999974 6887766
No 145
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=87.77 E-value=4.4 Score=38.54 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEecCCceEEEeccCCCccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 021957 170 IFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAY 249 (305)
Q Consensus 170 Iyd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~PnS~imiHqP~~g~~G~a~di~~~akel~~~k~~i~~~la~ 249 (305)
..++.-..++|+++.+.|-|-..|+.|+.-+|. .|+.. ..-+|.|... -|+..|--.. ... -+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~D--ka~F~TPfa~-lGq~PEG~Ss--~t~----------p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASD--KAWFQTPFAK-LGQSPEGCSS--VTL----------PK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEecc--ceEEeccchh-cCCCCCccee--eee----------hH
Confidence 456777788899999999999999999999998 77764 4556777532 1211110000 000 00
Q ss_pred HcCCCHHHHHh-hhcCCcccCHHHHHHcCCcceecCC
Q 021957 250 HTGQSLEKINQ-DTDRDYFMSPKEAKDYGLIDGVIMN 285 (305)
Q Consensus 250 ~TG~s~e~I~~-~~~rd~~lta~EA~eyGLID~Ii~~ 285 (305)
..|. +.-.+ ++-. .-|+|+||.++|||++|...
T Consensus 162 imG~--~~A~E~ll~~-~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 IMGS--ASANEMLLFG-EKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hhch--hhHHHHHHhC-CcccHHHHHhcCchhhhcCh
Confidence 0111 11111 2222 34699999999999999864
No 146
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=86.88 E-value=4.3 Score=36.32 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=56.6
Q ss_pred EEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------------------
Q 021957 123 IRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH------------------------- 176 (305)
Q Consensus 123 I~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~------------------------- 176 (305)
|.+..-..+...+.+.+.+..++. +.+.++|-+ +-+||++..+..|.+.+-.
T Consensus 64 i~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (224)
T cd06567 64 IRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGS 141 (224)
T ss_pred EEECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCc
Confidence 444444335556666666666665 578899999 8899999999999888764
Q ss_pred -cCCCeEEEEecccchHHHHHHhcC
Q 021957 177 -IRPDVSTVCVGLAASMGAFLLSAG 200 (305)
Q Consensus 177 -~k~pV~Tvv~G~AASaga~IlaaG 200 (305)
...||++++.+..+|+|=+++.+-
T Consensus 142 ~~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 142 LYDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred ccCCCEEEEECCCCccHHHHHHHHH
Confidence 234888999999999998887764
No 147
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=86.86 E-value=1.4 Score=45.07 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=64.6
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCC--cHHHHH-------HHHHHHHhc--CCCeEEEEecccchH
Q 021957 124 RCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGG--SVTAGM-------AIFDTMKHI--RPDVSTVCVGLAASM 192 (305)
Q Consensus 124 ~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGG--sV~ag~-------aIyd~I~~~--k~pV~Tvv~G~AASa 192 (305)
+++|.+.......+.+.+...... .-+++..++|.|+ ....++ .|+..+... ..|+.+++.|-|..+
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 467778888888877765544332 4578888999999 432221 233333322 469999999999999
Q ss_pred HHHHHhcCCCCcEEecCC-ceEEEecc
Q 021957 193 GAFLLSAGAKGKRYSLPN-SRIMIHQP 218 (305)
Q Consensus 193 ga~IlaaG~kgkR~a~Pn-S~imiHqP 218 (305)
++++++.++. .+|.++ +.+++.-|
T Consensus 146 ~A~~~~~~d~--~i~~~~~a~i~l~GP 170 (493)
T PF01039_consen 146 GAYLAALSDF--VIMVKGTARIFLAGP 170 (493)
T ss_dssp GGHHHHHSSE--EEEETTTCEEESSTH
T ss_pred hhhcccccCc--cccCccceEEEeccc
Confidence 9999999988 888887 99998777
No 148
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=83.03 E-value=13 Score=35.87 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=54.0
Q ss_pred EcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH----HHHHH------HHHHHhcCCCeEEEEe-----ccc
Q 021957 125 CGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT----AGMAI------FDTMKHIRPDVSTVCV-----GLA 189 (305)
Q Consensus 125 Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~----ag~aI------yd~I~~~k~pV~Tvv~-----G~A 189 (305)
++|-+..-+.+.|++.+.++-.+ .-++++.--|-|--.- +-++| ...++..+.|+.+|.. |+-
T Consensus 134 mgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVs 211 (294)
T COG0777 134 MGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 211 (294)
T ss_pred cccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 44444455678888877664433 3567666666554332 22222 2344445567777764 566
Q ss_pred chHHHHHHhcCCCCcEEecCCceEEEeccC
Q 021957 190 ASMGAFLLSAGAKGKRYSLPNSRIMIHQPL 219 (305)
Q Consensus 190 ASaga~IlaaG~kgkR~a~PnS~imiHqP~ 219 (305)
||-| +.||. .++.|.+.|++..|.
T Consensus 212 ASfA----~lGDi--~iAEP~AlIGFAGpR 235 (294)
T COG0777 212 ASFA----MLGDI--IIAEPGALIGFAGPR 235 (294)
T ss_pred HhHH----hccCe--eecCcccccccCcch
Confidence 6654 66888 899999999987774
No 149
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=77.32 E-value=17 Score=32.89 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=58.8
Q ss_pred ccHHHhhccCcEEE--EcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------
Q 021957 111 QSVISQLFQHRIIR--CGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH----------- 176 (305)
Q Consensus 111 ~di~s~L~~~RII~--Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~----------- 176 (305)
.|.|++++.. |-+ +.. .+....+.+.+.|..+...+ .+.++|-+ +.+||++..+..|...+-.
T Consensus 40 ~~~~~~~~~~-igYi~i~s-f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~ 116 (211)
T cd07560 40 LDPYSRYLTP-IGYIRITS-FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRN 116 (211)
T ss_pred CCCcceeeCc-eEEEEEcc-cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3445555444 433 333 33455667777777666543 78888888 7789999988888765442
Q ss_pred -------------cCCCeEEEEecccchHHHHHHhcC
Q 021957 177 -------------IRPDVSTVCVGLAASMGAFLLSAG 200 (305)
Q Consensus 177 -------------~k~pV~Tvv~G~AASaga~IlaaG 200 (305)
...||++++.+..+|+|=+++.+-
T Consensus 117 g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~l 153 (211)
T cd07560 117 GKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGAL 153 (211)
T ss_pred CceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHH
Confidence 245788888899999998877764
No 150
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=77.00 E-value=10 Score=36.47 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=54.9
Q ss_pred CHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh------------------------cCCCeEEE
Q 021957 130 DDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH------------------------IRPDVSTV 184 (305)
Q Consensus 130 dd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~------------------------~k~pV~Tv 184 (305)
+....+.+.+.|..++.. +.+.++|-+ +-+||.+..+..+...+-. .+.||+++
T Consensus 162 ~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vL 240 (334)
T TIGR00225 162 SEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVL 240 (334)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEE
Confidence 445567777777777654 478899999 8899999999998886621 23588899
Q ss_pred EecccchHHHHHHhcCC
Q 021957 185 CVGLAASMGAFLLSAGA 201 (305)
Q Consensus 185 v~G~AASaga~IlaaG~ 201 (305)
+.+..||+|=+++.+-.
T Consensus 241 vn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 241 VNRGSASASEIFAGALQ 257 (334)
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 99999999988888743
No 151
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=73.27 E-value=18 Score=30.32 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------------------------cCCCe
Q 021957 132 DMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH-----------------------------IRPDV 181 (305)
Q Consensus 132 ~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~-----------------------------~k~pV 181 (305)
...+.+.+.+..+.. ...+.++|-+ +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 344555555666654 4578999999 8889999988888876642 23468
Q ss_pred EEEEecccchHHHHHHhcC
Q 021957 182 STVCVGLAASMGAFLLSAG 200 (305)
Q Consensus 182 ~Tvv~G~AASaga~IlaaG 200 (305)
+.++.+.++|+|-+++.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHH
Confidence 8888999999998888764
No 152
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=71.15 E-value=18 Score=35.89 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh--------------------------cCCCeE
Q 021957 130 DDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH--------------------------IRPDVS 182 (305)
Q Consensus 130 dd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~--------------------------~k~pV~ 182 (305)
+....+.+.+.|..++.. ..+.++|-+ |-|||.+..+..|.+.+-. ...|++
T Consensus 205 ~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvv 283 (389)
T PLN00049 205 NQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPLA 283 (389)
T ss_pred cchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCEE
Confidence 445667777888777754 478899998 8899999999999887721 124788
Q ss_pred EEEecccchHHHHHHhc
Q 021957 183 TVCVGLAASMGAFLLSA 199 (305)
Q Consensus 183 Tvv~G~AASaga~Ilaa 199 (305)
+++.+..||++=+++.+
T Consensus 284 VLvn~~TaSasEi~a~a 300 (389)
T PLN00049 284 VLVNKGTASASEILAGA 300 (389)
T ss_pred EEECCCCccHHHHHHHH
Confidence 88899999999887776
No 153
>PRK11186 carboxy-terminal protease; Provisional
Probab=70.48 E-value=16 Score=39.18 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------------------cCCCeEEEE
Q 021957 132 DMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH-------------------------IRPDVSTVC 185 (305)
Q Consensus 132 ~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~-------------------------~k~pV~Tvv 185 (305)
...+.+.+.|..++.+ +.+.++|-+ |-|||++..+..|.+.+-. ...|+++.+
T Consensus 366 ~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLV 444 (667)
T PRK11186 366 GLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLV 444 (667)
T ss_pred chHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEe
Confidence 4567777777777754 588999999 8899999999999886421 134888999
Q ss_pred ecccchHHHHHHhc
Q 021957 186 VGLAASMGAFLLSA 199 (305)
Q Consensus 186 ~G~AASaga~Ilaa 199 (305)
.+..||++=+++.+
T Consensus 445 N~~SASASEIfA~a 458 (667)
T PRK11186 445 DRYSASASEIFAAA 458 (667)
T ss_pred CCCCccHHHHHHHH
Confidence 99999999888886
No 154
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=69.89 E-value=32 Score=32.17 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh
Q 021957 131 DDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH 176 (305)
Q Consensus 131 d~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~ 176 (305)
....+.+.+.+..++++ +.+.++|-+ +-|||.+..+..|.+.+-.
T Consensus 76 ~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 76 SGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred cchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 34567788888888765 478899988 8899999999999888875
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=67.52 E-value=20 Score=36.07 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------------------cCCCeEE
Q 021957 130 DDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH-------------------------IRPDVST 183 (305)
Q Consensus 130 dd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~-------------------------~k~pV~T 183 (305)
+....+.+...|..|+.+. .+.++|-+ |-|||...++..|.+.... ...|+++
T Consensus 214 ~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plvv 292 (406)
T COG0793 214 GEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVV 292 (406)
T ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEE
Confidence 3455666777787888765 89999999 8999999999999988771 1247889
Q ss_pred EEecccchHHHHHHhc
Q 021957 184 VCVGLAASMGAFLLSA 199 (305)
Q Consensus 184 vv~G~AASaga~Ilaa 199 (305)
++.+-.||++=+++.+
T Consensus 293 Lvn~~SASAsEI~aga 308 (406)
T COG0793 293 LVNEGSASASEIFAGA 308 (406)
T ss_pred EECCCCccHHHHHHHH
Confidence 9999999999887776
No 156
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=66.95 E-value=11 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.460 Sum_probs=29.2
Q ss_pred EEEEcceeCHhHHHHHHHHHHH-hhhcCCCCCEEEEEeCCCCcHH
Q 021957 122 IIRCGGAVDDDMANIIVAQLLY-LDAIDPHKDIVIYVNSPGGSVT 165 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~-L~~~d~~k~I~L~INSPGGsV~ 165 (305)
++-+.|-|+..-.+.+.+.+-. |.-..+...+.|++-||||.|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 4567889987655554443321 2223456789999999999874
No 157
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=66.48 E-value=51 Score=34.05 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=57.8
Q ss_pred ceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCeEEEEecccchHHHHH
Q 021957 127 GAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG----------GSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFL 196 (305)
Q Consensus 127 g~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~I 196 (305)
|-++.+++.....-+.+-.+ ..=++++..|+|| |-...|-.+.++....+.|..|+..|-+.. |.+-
T Consensus 363 G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred cccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 55666666665554444332 3568999999999 334455566677777788999999999888 5555
Q ss_pred Hh----cCCCCcEEecCCceEEE
Q 021957 197 LS----AGAKGKRYSLPNSRIMI 215 (305)
Q Consensus 197 la----aG~kgkR~a~PnS~imi 215 (305)
++ .|+. .||-||++|.+
T Consensus 440 m~sr~~~gd~--~yawP~A~Iav 460 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAV 460 (536)
T ss_pred ccccccCCce--eEEcccceeee
Confidence 44 3555 78888888864
No 158
>smart00245 TSPc tail specific protease. tail specific protease
Probab=64.89 E-value=43 Score=29.53 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=50.3
Q ss_pred eCHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHhc-------------------------CCCeE
Q 021957 129 VDDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKHI-------------------------RPDVS 182 (305)
Q Consensus 129 Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~~-------------------------k~pV~ 182 (305)
.+..+.+.+.+.+..++.. +.+.++|-+ +.+||.+.++..+.+.+..- ..||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 3444556677777777754 478888888 66999999998888876321 13577
Q ss_pred EEEecccchHHHHHHhcC
Q 021957 183 TVCVGLAASMGAFLLSAG 200 (305)
Q Consensus 183 Tvv~G~AASaga~IlaaG 200 (305)
+++.+..+|+|=+++.+-
T Consensus 117 vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 117 VLVNEGTASASEIFAGAL 134 (192)
T ss_pred EEECCCCeeHHHHHHHHH
Confidence 777788888887776664
No 159
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=61.64 E-value=49 Score=30.26 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=40.0
Q ss_pred CCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------------------cCCCeEEEEecccchHHHH
Q 021957 150 HKDIVIYV-NSPGGSVTAGMAIFDTMKH---------------------------------IRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 150 ~k~I~L~I-NSPGGsV~ag~aIyd~I~~---------------------------------~k~pV~Tvv~G~AASaga~ 195 (305)
.+.++|-+ +.+||+...+..|...+-. .+.||++++.+..+|+|-.
T Consensus 95 ~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~ 174 (250)
T cd07563 95 TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEE 174 (250)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHH
Confidence 37888888 7789999888888777751 1247888888999999988
Q ss_pred HHhcCC
Q 021957 196 LLSAGA 201 (305)
Q Consensus 196 IlaaG~ 201 (305)
++.+-.
T Consensus 175 ~a~~lk 180 (250)
T cd07563 175 FAYALK 180 (250)
T ss_pred HHHHHH
Confidence 877643
No 160
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=60.15 E-value=65 Score=29.87 Aligned_cols=82 Identities=21% Similarity=0.144 Sum_probs=51.1
Q ss_pred HhhccCcEEEEcce-eCHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh----------------
Q 021957 115 SQLFQHRIIRCGGA-VDDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKH---------------- 176 (305)
Q Consensus 115 s~L~~~RII~Lgg~-Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~---------------- 176 (305)
.++..++|-+|.-+ +.+...+.+.+.++. ....+.++|-+ +-+||++.. .|.+.+..
T Consensus 82 ~~~~~~~igYi~i~~~~~~~~~~~~~~~~~---~~~~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~ 156 (266)
T cd07562 82 EELSDGRIGYVHIPDMGDDGFAEFLRDLLA---EVDKDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVT 156 (266)
T ss_pred HHhcCCcEEEEEeCCCChHHHHHHHHHHHh---cCCCceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCC
Confidence 44555777665332 234444445554432 22278999999 778888433 34444321
Q ss_pred -----cCCCeEEEEecccchHHHHHHhcCC
Q 021957 177 -----IRPDVSTVCVGLAASMGAFLLSAGA 201 (305)
Q Consensus 177 -----~k~pV~Tvv~G~AASaga~IlaaG~ 201 (305)
.+.||++++.+.++|+|-+++.+-.
T Consensus 157 ~p~~~~~~pv~vL~~~~t~SaaE~~a~~lk 186 (266)
T cd07562 157 YPSGRWRGPVVVLVNEGSASDAEIFAYGFR 186 (266)
T ss_pred CcccccCCCEEEEECCCCCchHHHHHHHHH
Confidence 3468999999999999988887643
No 161
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=59.30 E-value=33 Score=33.16 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=51.6
Q ss_pred cEEEEcce--eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021957 121 RIIRCGGA--VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAA 190 (305)
Q Consensus 121 RII~Lgg~--Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AA 190 (305)
.+|-+|.. .|-+ +.+-|.++..|+.++.|.||+-+-|-.+..+..+.++.+. ++||.++..|..+
T Consensus 179 ~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 46788888 5544 3455778888888999999999988888888888887654 7899999888775
No 162
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=56.05 E-value=41 Score=33.77 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=66.6
Q ss_pred CcEEEEcce-----eCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-----CCCCcHHH-------------------HHHH
Q 021957 120 HRIIRCGGA-----VDDDMANIIVAQLLYLDAIDPHKDIVIYVN-----SPGGSVTA-------------------GMAI 170 (305)
Q Consensus 120 ~RII~Lgg~-----Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-------------------g~aI 170 (305)
.|+|.|+-| ++-++...+...|..++.++..+-|+|.=+ |-||+|.+ -..+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 478888776 677788888888888887766665555544 45788542 2223
Q ss_pred HHHHHhcCCCeEEEEecccchHHHHHHhcCCCCcEEec-------CCceEEEec
Q 021957 171 FDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSL-------PNSRIMIHQ 217 (305)
Q Consensus 171 yd~I~~~k~pV~Tvv~G~AASaga~IlaaG~kgkR~a~-------PnS~imiHq 217 (305)
...|-.+.+|++++..|+-+.+|.=|..-|.- |+|. |..-|++|.
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~AmPEt~IGlfP 179 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVFAMPETGIGLFP 179 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccceeccccccccccc
Confidence 34556667899999999999999888877655 5554 444455554
No 163
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=55.13 E-value=84 Score=24.41 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=43.0
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEE------EEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHH
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVI------YVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L------~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~ 195 (305)
++.+.|+++-..++.+.+++..+-...+.+.+.| ||+|.| +.+-..++..++.. .+..+..|.....--+
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg--i~~L~~~~~~~~~~--g~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG--LGVILGRYKKIKNE--GGEVIVCNVSPAVKRL 86 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH--HHHHHHHHHHHHHc--CCEEEEEeCCHHHHHH
Confidence 6789999999999999998866533334566666 344433 11222233444432 3444455555555555
Q ss_pred HHhcC
Q 021957 196 LLSAG 200 (305)
Q Consensus 196 IlaaG 200 (305)
+-.+|
T Consensus 87 l~~~g 91 (106)
T TIGR02886 87 FELSG 91 (106)
T ss_pred HHHhC
Confidence 54444
No 164
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=54.78 E-value=38 Score=28.89 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=35.9
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC--CCeEEEEecc
Q 021957 120 HRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR--PDVSTVCVGL 188 (305)
Q Consensus 120 ~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k--~pV~Tvv~G~ 188 (305)
..+|.+|.+.|-... +-|.++..++.++.|.+|+.+-+- +....+.+++.. +||.++-.|.
T Consensus 29 s~~vs~Gn~~dv~~~----d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 29 SYVVSVGNEADVDFA----DLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SEEEE-TT-SSS-HH----HHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred eEEEEeCccccCCHH----HHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 346888888765433 346677778889999999997543 677777777776 7899887776
No 165
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=52.68 E-value=1.1e+02 Score=23.86 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=48.7
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEe-CCCCcHHHHHHHHHHHHhcC-CCeEEEEecccchHHHHHHhc
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVN-SPGGSVTAGMAIFDTMKHIR-PDVSTVCVGLAASMGAFLLSA 199 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~IN-SPGGsV~ag~aIyd~I~~~k-~pV~Tvv~G~AASaga~Ilaa 199 (305)
++.+.|+++...++.+.+.+...-.+...+.++|.+. .+-=+.+...++.+..+..+ ..+..+..|.-....-.+-.+
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh
Confidence 5779999999999999887754333234556666442 22223344445555555544 346666667666666666555
Q ss_pred CC
Q 021957 200 GA 201 (305)
Q Consensus 200 G~ 201 (305)
|-
T Consensus 93 gl 94 (109)
T cd07041 93 GI 94 (109)
T ss_pred CC
Confidence 53
No 166
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=51.69 E-value=1e+02 Score=24.21 Aligned_cols=80 Identities=25% Similarity=0.271 Sum_probs=53.9
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCC--------CCCEEEEEeC-CCCcHHHHHHHHHHHHhcC-CCeEEEEecccc
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDP--------HKDIVIYVNS-PGGSVTAGMAIFDTMKHIR-PDVSTVCVGLAA 190 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~--------~k~I~L~INS-PGGsV~ag~aIyd~I~~~k-~pV~Tvv~G~AA 190 (305)
.|+.+.|+++...++.+.+.+..+...++ .+.|+|.+.. +.=+.++...|.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999999999999999887776554 3667776633 3334556666667776665 456666666655
Q ss_pred hHHHHHHhcC
Q 021957 191 SMGAFLLSAG 200 (305)
Q Consensus 191 Saga~IlaaG 200 (305)
..--.+-.+|
T Consensus 91 ~v~~~l~~~~ 100 (117)
T PF01740_consen 91 DVRRILERSG 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5554444443
No 167
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=48.32 E-value=1.2e+02 Score=23.38 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=41.4
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEE------EEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchHHHH
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVI------YVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAF 195 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L------~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASaga~ 195 (305)
+|.+.|.++...+..+.+.+..+......+.|.+ +|+|-| ...-..++..++.. .+..+..|.-....-+
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg--l~~L~~~~~~~~~~--~~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG--LGVLLGRYKQVRRV--GGQLVLVSVSPRVARL 90 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc--HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 5789999999988888888876654334555666 344444 22222233334432 3445555554444444
Q ss_pred HHhc
Q 021957 196 LLSA 199 (305)
Q Consensus 196 Ilaa 199 (305)
+-..
T Consensus 91 l~~~ 94 (108)
T TIGR00377 91 LDIT 94 (108)
T ss_pred HHHh
Confidence 4333
No 168
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=47.44 E-value=64 Score=31.26 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=51.4
Q ss_pred EEEEcce-eCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHH--HHHHHHHHHhcCCCeEEEEecccchHHHHHHh
Q 021957 122 IIRCGGA-VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTA--GMAIFDTMKHIRPDVSTVCVGLAASMGAFLLS 198 (305)
Q Consensus 122 II~Lgg~-Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a--g~aIyd~I~~~k~pV~Tvv~G~AASaga~Ila 198 (305)
.|=|+|. |.- -.+++.|..++.| +....++.|-=+||...+ +.-|-+ +..++||++++.|..|
T Consensus 175 ~IGiGGDpi~G---t~fid~L~~fe~D-p~T~~ivmiGEiGG~aEe~AA~~i~~--~~~~KPVVa~iaG~ta-------- 240 (293)
T COG0074 175 AIGIGGDPIPG---TSFIDALEMFEAD-PETEAIVMIGEIGGPAEEEAAEYIKA--NATRKPVVAYIAGRTA-------- 240 (293)
T ss_pred EEEeCCCCcCC---ccHHHHHHHHhcC-ccccEEEEEecCCCcHHHHHHHHHHH--hccCCCEEEEEeccCC--------
Confidence 4666664 333 2356667666654 555677889999998653 333333 4455899999999888
Q ss_pred cCCCCcEEecCCceEE
Q 021957 199 AGAKGKRYSLPNSRIM 214 (305)
Q Consensus 199 aG~kgkR~a~PnS~im 214 (305)
.+|||.....|.+.
T Consensus 241 --p~gkrmGhaGaiv~ 254 (293)
T COG0074 241 --PEGKRMGHAGAIVS 254 (293)
T ss_pred --Cccchhhhhhhhhc
Confidence 77788877777664
No 169
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=45.37 E-value=1.3e+02 Score=22.45 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=51.3
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhcCC-CeEEEEecccchHHHHHHh
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNS-PGGSVTAGMAIFDTMKHIRP-DVSTVCVGLAASMGAFLLS 198 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~ag~aIyd~I~~~k~-pV~Tvv~G~AASaga~Ila 198 (305)
.++.+.|+++...+..+.+++..+..+ ..+.|.+.+.. +.=+..+...+....+..+. .+...+.|......-++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~-~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAE-GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHc-CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 467899999998888888877655433 24566655532 22345566667777777653 5666667776666666655
Q ss_pred cC
Q 021957 199 AG 200 (305)
Q Consensus 199 aG 200 (305)
+|
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 55
No 170
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.50 E-value=1.5e+02 Score=25.83 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=43.0
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC-CcHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021957 120 HRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG-GSVTAGMAIFDTMKHIRPDVSTVCVGLAA 190 (305)
Q Consensus 120 ~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG-GsV~ag~aIyd~I~~~k~pV~Tvv~G~AA 190 (305)
.+|.++|+. +++.+.+.+.|. ..-+ .+.+.-..+| -+-....+|.+.|+..++++..+++|.==
T Consensus 49 ~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 49 KRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred CeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH
Confidence 467777776 666666666653 3333 3444432333 37778899999999999999999887543
No 171
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=43.20 E-value=65 Score=33.73 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=61.8
Q ss_pred EcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH--------HHHHHHHHHHhcC-CCeEEEEecccchHHHH
Q 021957 125 CGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT--------AGMAIFDTMKHIR-PDVSTVCVGLAASMGAF 195 (305)
Q Consensus 125 Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~--------ag~aIyd~I~~~k-~pV~Tvv~G~AASaga~ 195 (305)
.+|...+...+.++.... +..+ ...+++...+|-|+.+. .|.-.|+..+.+. .|.++++.|-|+.+|+|
T Consensus 103 ~gGt~~~~~~~Ki~r~~~-~A~~-~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQE-LAIE-NGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHH-HHHH-cCCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 456666656666665433 2222 24566666677775442 2555666666654 59999999999999999
Q ss_pred HHhcCCCCcEEecCC-ceEEEecc
Q 021957 196 LLSAGAKGKRYSLPN-SRIMIHQP 218 (305)
Q Consensus 196 IlaaG~kgkR~a~Pn-S~imiHqP 218 (305)
+..-++. .+|..+ +.+.+--|
T Consensus 181 ~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccce--EEEEcCCccEEeeCH
Confidence 9999998 888888 76776665
No 172
>PHA00099 minor capsid protein
Probab=42.15 E-value=1.8e+02 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHHHHHHHHH---HHHHcCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCccccCCCCccc
Q 021957 236 MLHHKANLNGY---LAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMNPLKALQPLPAA 296 (305)
Q Consensus 236 l~~~k~~i~~~---la~~TG~s~e~I~~~~~rd~~lta~EA~eyGLID~Ii~~~~~~L~~~~~~ 296 (305)
+.+..+.|..+ +.++.|-++++....+.+.. .-+||+.+||+ ..+.+..+=|..-.+
T Consensus 70 V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~--~~~~p~~apq~~~~~ 129 (147)
T PHA00099 70 VIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV--YEDGPSGAPQTFFEA 129 (147)
T ss_pred HHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee--eecCcccccchhhhc
Confidence 33334444443 45678999999888887654 36899999999 445555554444433
No 173
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=40.91 E-value=85 Score=30.69 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=47.1
Q ss_pred CcEEEEccee--CHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021957 120 HRIIRCGGAV--DDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAA 190 (305)
Q Consensus 120 ~RII~Lgg~I--dd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AA 190 (305)
..+|-+|+.- +-+ +.+-|.+++.|+.++.|.||+-.-|-....+.+..+. ...++||.++..|..+
T Consensus 197 S~~VsiGnd~~~g~~----~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 197 STCVGIGGDPFNGTN----FIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEEeCCCCCCCCC----HHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 3467788873 332 4556777888888999999999877776666555554 3346899999888765
No 174
>PLN02522 ATP citrate (pro-S)-lyase
Probab=38.41 E-value=85 Score=33.45 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=45.7
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHh--cCCCeEEEEecccc
Q 021957 120 HRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH--IRPDVSTVCVGLAA 190 (305)
Q Consensus 120 ~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~--~k~pV~Tvv~G~AA 190 (305)
..+|-+|+..+..+ .+.+-|.+++.|+.++.|.||+-=-|.+- ....+.++. .++||++++.|..+
T Consensus 195 S~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e---~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 195 YEGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGRDE---YSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCchhH---HHHHHHHHHhcCCCCEEEEeccCCC
Confidence 44688998765332 24556777888888999999987444433 344455554 46899999999877
No 175
>PRK06091 membrane protein FdrA; Validated
Probab=37.07 E-value=83 Score=33.16 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=49.4
Q ss_pred cEEEEcce-eCHhH-HHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021957 121 RIIRCGGA-VDDDM-ANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAA 190 (305)
Q Consensus 121 RII~Lgg~-Idd~~-a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AA 190 (305)
.+|-+|+. +.++. .-.+.+.|.+|..++.++.|.+|+--|+-.+.. .+.+.++..++||+++..|.-.
T Consensus 222 ~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 222 HAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred EEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 35677877 11111 112345677788888899999999888877775 8888888889999999988644
No 176
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.74 E-value=1.1e+02 Score=27.97 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=54.5
Q ss_pred ccchhhccHH----HhhccCcEEEEcceeCHhH----HHHHHHHHHHhhhcCCCCCEEEEEeCC-CCcHHHHHHHHHHHH
Q 021957 105 MVQERFQSVI----SQLFQHRIIRCGGAVDDDM----ANIIVAQLLYLDAIDPHKDIVIYVNSP-GGSVTAGMAIFDTMK 175 (305)
Q Consensus 105 ~~~~~~~di~----s~L~~~RII~Lgg~Idd~~----a~~iiaqLl~L~~~d~~k~I~L~INSP-GGsV~ag~aIyd~I~ 175 (305)
.|.|...|++ +..|+.+--.|+|.|++-- .+.-++.|+..-.++..+.|+|-+|+- =|..++ .-|.+.++
T Consensus 82 CVVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta-~yi~~~lk 160 (195)
T TIGR00615 82 CVVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEGEATA-LYIARLLQ 160 (195)
T ss_pred EEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchHHHHH-HHHHHHhh
Confidence 3567777886 5678898888998876521 222234443322345688999999754 466655 46888888
Q ss_pred hcCCCeEEEEeccc
Q 021957 176 HIRPDVSTVCVGLA 189 (305)
Q Consensus 176 ~~k~pV~Tvv~G~A 189 (305)
....+|+=+..|+-
T Consensus 161 ~~~ikvtRlA~GiP 174 (195)
T TIGR00615 161 PFGVKVTRIASGLP 174 (195)
T ss_pred hcCCcEEeeeecCC
Confidence 77667776666543
No 177
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.44 E-value=2.5e+02 Score=24.38 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=42.8
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEEEEecccchH
Q 021957 120 HRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASM 192 (305)
Q Consensus 120 ~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~Tvv~G~AASa 192 (305)
.||.++|+. +++.+.+.+.| ...-+.-.|.-+-+-|-+..... .|.+.|+..++++..+++|.=-.-
T Consensus 47 ~~v~llG~~--~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~~~~-~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 47 LRVFLLGAK--PEVLEKAAERL---RARYPGLKIVGYHHGYFGPEEEE-EIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CeEEEECCC--HHHHHHHHHHH---HHHCCCcEEEEecCCCCChhhHH-HHHHHHHHcCCCEEEEECCCCHHH
Confidence 466667665 55555555554 33334444554456666655444 499999999999999988864433
No 178
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=31.09 E-value=1.1e+02 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCeEEE
Q 021957 155 IYVNSPGGSVTAGMAIFDTMKHIRPDVSTV 184 (305)
Q Consensus 155 L~INSPGGsV~ag~aIyd~I~~~k~pV~Tv 184 (305)
+.|| ||+.--.+.+|.|+|+.+..||+=|
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 6666 9999999999999999999987755
No 179
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=30.46 E-value=2.3e+02 Score=23.68 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=41.6
Q ss_pred ccHHHhhc--cCcEEEEcceeCHh---HHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCC
Q 021957 111 QSVISQLF--QHRIIRCGGAVDDD---MANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 180 (305)
Q Consensus 111 ~di~s~L~--~~RII~Lgg~Idd~---~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~p 180 (305)
.+....+. ..+|..+++.-++. ..++|.+.+..+. +..+.+.+..+= ||++......++.++.-+..
T Consensus 17 ~~~~~~~~g~~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~--~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~~ 88 (125)
T TIGR02364 17 KELIKQMAGDDVTIISAGGTDDGRLGTSPDKIIEAIEKAD--NEADGVLIFYDL-GSAVMNAEMAVELLEDEDRD 88 (125)
T ss_pred HHHHHHHcCCCccEEEEecCCCCCccchHHHHHHHHHHhc--CCCCCEEEEEcC-CCcHhHHHHHHHHhcccccc
Confidence 34444444 46777887765543 2455555554432 225689999999 99998876777777653333
No 180
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=30.45 E-value=1.2e+02 Score=28.82 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.8
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEE-eCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYV-NSPGGSVTAGMAIFDTMKHIRPDVSTVC 185 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~I~~~k~pV~Tvv 185 (305)
||+|+|.-+...-...+...|..|..+.+..-++.-- |.-|| ......+++.|.....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-KGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-CCCCHHHHHHHHhcCCCEEEcc
Confidence 6899988887755555666676777655443233233 44444 3556899999999999999885
No 181
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=29.07 E-value=2.1e+02 Score=23.78 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=50.8
Q ss_pred chhhccHH----HhhccCcEEEEcceeCHh----HHHHHHHHHHHhhhcCCCCCEEEEEeCC-CCcHHHHHHHHHHHHhc
Q 021957 107 QERFQSVI----SQLFQHRIIRCGGAVDDD----MANIIVAQLLYLDAIDPHKDIVIYVNSP-GGSVTAGMAIFDTMKHI 177 (305)
Q Consensus 107 ~~~~~di~----s~L~~~RII~Lgg~Idd~----~a~~iiaqLl~L~~~d~~k~I~L~INSP-GGsV~ag~aIyd~I~~~ 177 (305)
.|...|++ +..|+.+-..|+|.|++- ..+.-+..|...-.+.+.+.|+|-.|.- =|..++ .-|.+.++..
T Consensus 6 VE~~~Dv~~iE~~~~y~G~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta-~yi~~~l~~~ 84 (112)
T cd01025 6 VEEPRDVLAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNPTVEGEATA-LYIAKLLKDF 84 (112)
T ss_pred ECCHHHHHHHHhhCccceEEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEEecCCCchHHHHH-HHHHHHHhHc
Confidence 34455654 355778877788887752 1223344554433344578888888654 455554 4578888877
Q ss_pred CCCeEEEEeccc
Q 021957 178 RPDVSTVCVGLA 189 (305)
Q Consensus 178 k~pV~Tvv~G~A 189 (305)
..+|+=+..|+-
T Consensus 85 ~~kvsRlA~GiP 96 (112)
T cd01025 85 GVKVTRLAQGIP 96 (112)
T ss_pred CCCeEEEEEcCC
Confidence 777776666654
No 182
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=27.67 E-value=2.3e+02 Score=27.22 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=42.0
Q ss_pred cEEEEcceeC--HhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHh-cCCCeEEEEecccc
Q 021957 121 RIIRCGGAVD--DDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH-IRPDVSTVCVGLAA 190 (305)
Q Consensus 121 RII~Lgg~Id--d~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~-~k~pV~Tvv~G~AA 190 (305)
.+|-+|...+ -+. .+-|.++..|+.++.|.||+-+-|-....+ ...++. .++||.++-.|...
T Consensus 172 ~~Vs~Gn~a~~dv~~----~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~---~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 172 TCVGIGGDPVNGTSF----IDVLEAFEKDPETEAIVMIGEIGGSAEEEA---ADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEEeCCCcCCCCCH----HHHHHHHhhCCCCcEEEEEEecCCchHHHH---HHHHHhcCCCCEEEEEecCCC
Confidence 3678888854 333 344667788888999999999644333322 233444 56899999888754
No 183
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=27.61 E-value=2.4e+02 Score=25.61 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=43.5
Q ss_pred ccHHHhhccCcEEEEcceeCHhHHHHHHHHHHHhh-hcCCCCCEEEEE---eCCCCcHHHHHHHHHHHHhcCCCeEEEEe
Q 021957 111 QSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLD-AIDPHKDIVIYV---NSPGGSVTAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 111 ~di~s~L~~~RII~Lgg~Idd~~a~~iiaqLl~L~-~~d~~k~I~L~I---NSPGGsV~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
.++..+++.+--+-+ ..+.+++-|--.+..|+ ..+....+.|.+ |...|.+..-.+-...-+..+.+|+|+..
T Consensus 74 ~~~l~~~l~~~q~g~---ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgi 150 (191)
T cd01455 74 LETLKMMHAHSQFCW---SGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFI 150 (191)
T ss_pred HHHHHHHHHhcccCc---cCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEe
Confidence 345666666543333 33566777766677775 444333444444 33345566554444555667789999988
Q ss_pred cc
Q 021957 187 GL 188 (305)
Q Consensus 187 G~ 188 (305)
|.
T Consensus 151 G~ 152 (191)
T cd01455 151 GS 152 (191)
T ss_pred cC
Confidence 86
No 184
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=26.92 E-value=1.4e+02 Score=27.94 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=51.6
Q ss_pred EEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCeEE---EEe-----cccchHHH
Q 021957 123 IRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVST---VCV-----GLAASMGA 194 (305)
Q Consensus 123 I~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~T---vv~-----G~AASaga 194 (305)
+.-+.+|-..+...+..++..++ ..-..+.+|+||+.++++.++-+.++..+..+.| ++. ..|++||=
T Consensus 51 ~~atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgk 126 (245)
T COG3904 51 ISATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGK 126 (245)
T ss_pred hcCCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEEEEEecCCCCcHHHHHhhhh
Confidence 34455666666666666655443 4678899999999999999999999999988877 322 25667775
Q ss_pred HHH
Q 021957 195 FLL 197 (305)
Q Consensus 195 ~Il 197 (305)
+|=
T Consensus 127 LiR 129 (245)
T COG3904 127 LIR 129 (245)
T ss_pred hhh
Confidence 553
No 185
>PLN02727 NAD kinase
Probab=26.53 E-value=2.1e+02 Score=32.30 Aligned_cols=50 Identities=8% Similarity=-0.090 Sum_probs=33.5
Q ss_pred CCCCEEEEEeCCCC-cHHHHHHHHHHH-HhcCCCeEEEEecccchHHHHHHh
Q 021957 149 PHKDIVIYVNSPGG-SVTAGMAIFDTM-KHIRPDVSTVCVGLAASMGAFLLS 198 (305)
Q Consensus 149 ~~k~I~L~INSPGG-sV~ag~aIyd~I-~~~k~pV~Tvv~G~AASaga~Ila 198 (305)
+-+-+++-+++++. +...-.++.+.+ +..+.||..+|..=+-++|+++++
T Consensus 310 GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 310 KIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHH
Confidence 34455555666554 668888888888 668899999998555444444433
No 186
>smart00250 PLEC Plectin repeat.
Probab=26.19 E-value=44 Score=21.95 Aligned_cols=18 Identities=39% Similarity=0.318 Sum_probs=15.0
Q ss_pred CcccCHHHHHHcCCccee
Q 021957 265 DYFMSPKEAKDYGLIDGV 282 (305)
Q Consensus 265 d~~lta~EA~eyGLID~I 282 (305)
..-||-.||++-||||..
T Consensus 19 ~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 19 GQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCcCHHHHHHcCCCCcc
Confidence 345799999999999974
No 187
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=25.87 E-value=2.4e+02 Score=24.03 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=30.3
Q ss_pred CcEEEEcceeCHh------HHHHHHHHHHHhhhcCCCCCEEEEEeCCCCc--HHHHHHHHHHHH
Q 021957 120 HRIIRCGGAVDDD------MANIIVAQLLYLDAIDPHKDIVIYVNSPGGS--VTAGMAIFDTMK 175 (305)
Q Consensus 120 ~RII~Lgg~Idd~------~a~~iiaqLl~L~~~d~~k~I~L~INSPGGs--V~ag~aIyd~I~ 175 (305)
..+-|..-+|+|. ..+.|++.+..+ .+.-.|.+||-.|. .+.++.||++|+
T Consensus 91 ~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp TT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455666677664 344444444322 33677888998876 689999999985
No 188
>PRK13844 recombination protein RecR; Provisional
Probab=25.11 E-value=2e+02 Score=26.45 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=52.2
Q ss_pred ccchhhccHH----HhhccCcEEEEcceeCHh----HHHHHHHHHHHhhhcCCCCCEEEEEeCC-CCcHHHHHHHHHHHH
Q 021957 105 MVQERFQSVI----SQLFQHRIIRCGGAVDDD----MANIIVAQLLYLDAIDPHKDIVIYVNSP-GGSVTAGMAIFDTMK 175 (305)
Q Consensus 105 ~~~~~~~di~----s~L~~~RII~Lgg~Idd~----~a~~iiaqLl~L~~~d~~k~I~L~INSP-GGsV~ag~aIyd~I~ 175 (305)
.|.|...|++ +..|+.+--.|+|.|++- -.+.-++.|+..-.+...+.|+|-+|.- =|.+++- -|.+.++
T Consensus 86 CVVE~~~Dv~aiE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~-yi~~~lk 164 (200)
T PRK13844 86 CIIESMLDMIAIEEAGIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIADRKIDEVILAISPTVEGETTAH-FISQMIA 164 (200)
T ss_pred EEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCccHHHHHH-HHHHHhc
Confidence 3567777886 567888888899988652 1222334444322234688999998754 4666654 5778887
Q ss_pred hcCCCeEEEEecc
Q 021957 176 HIRPDVSTVCVGL 188 (305)
Q Consensus 176 ~~k~pV~Tvv~G~ 188 (305)
. ..+|+=+..|+
T Consensus 165 ~-~vkvtRlA~Gi 176 (200)
T PRK13844 165 K-DIKISRIGFGV 176 (200)
T ss_pred C-CCcEEeeeecC
Confidence 6 66666555554
No 189
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=24.52 E-value=2e+02 Score=25.24 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=30.4
Q ss_pred HHHHHcCCCHHHHHhhhcCCcccCHHHHHHc----CCccee
Q 021957 246 YLAYHTGQSLEKINQDTDRDYFMSPKEAKDY----GLIDGV 282 (305)
Q Consensus 246 ~la~~TG~s~e~I~~~~~rd~~lta~EA~ey----GLID~I 282 (305)
-+|+++|++...+....-+...+++++|... ||=+++
T Consensus 26 ~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lLgL~~e~ 66 (150)
T TIGR00673 26 DIADGLGLAEVFVAAALYGQAAAPADEARLVGAKLDLDEDS 66 (150)
T ss_pred HHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3589999999999999999899999999774 555544
No 190
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=24.14 E-value=1.5e+02 Score=23.68 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=26.5
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCC
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPG 161 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPG 161 (305)
++.+.|+||...+..+.+.+...-.....+. +.||.-|
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~ 53 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSG 53 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCC
Confidence 6889999999999999988873333332332 5566655
No 191
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=23.78 E-value=3.2e+02 Score=26.24 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=40.3
Q ss_pred cEEEEcceeC--HhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHh-cCCCeEEEEecccc
Q 021957 121 RIIRCGGAVD--DDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKH-IRPDVSTVCVGLAA 190 (305)
Q Consensus 121 RII~Lgg~Id--d~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~-~k~pV~Tvv~G~AA 190 (305)
.+|-+|...+ -+ +.+-|.+|..|+.++.|.||+-+-| .-.. .....+.. .++||.++..|...
T Consensus 174 ~~Vs~Gn~~~~dv~----~~D~l~~l~~Dp~T~~I~lylE~~~-~~~~--~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 174 TCVGIGGDPINGTN----FIDVLEAFEEDPETEAIVMIGEIGG-SAEE--EAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEEeCCCcCCCCC----HHHHHHHHhhCCCCcEEEEEEecCC-cHHH--HHHHHHHHcCCCCEEEEEecCCC
Confidence 3677888843 33 2345677888888999999999432 2211 11222333 37899999988855
No 192
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=23.70 E-value=1.3e+02 Score=28.36 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=30.9
Q ss_pred EEEEEeCCC-CcHHHHHHHHHHHHhcCCCeEEEEecc
Q 021957 153 IVIYVNSPG-GSVTAGMAIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 153 I~L~INSPG-GsV~ag~aIyd~I~~~k~pV~Tvv~G~ 188 (305)
|.+.+..+| |-++-+.+|.+.|+. ..+|..++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 778899999 999999999999998 77887777666
No 193
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=23.59 E-value=1.2e+02 Score=20.62 Aligned_cols=31 Identities=23% Similarity=0.044 Sum_probs=24.7
Q ss_pred HHHHHHcCCCHHHHHhhhcCCcccCHHHHHH
Q 021957 245 GYLAYHTGQSLEKINQDTDRDYFMSPKEAKD 275 (305)
Q Consensus 245 ~~la~~TG~s~e~I~~~~~rd~~lta~EA~e 275 (305)
+-+++.+|.+...|.+...+....+.+.+.+
T Consensus 13 ~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 4468889999999999988888888887765
No 194
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=23.21 E-value=1.2e+02 Score=27.69 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC
Q 021957 134 ANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR 178 (305)
Q Consensus 134 a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~k 178 (305)
...|.++.+.+..-...|.|-+|+|+++|.|+.+.-|-++++.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 444555555554445688999999999999999988888887754
No 195
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=22.97 E-value=40 Score=23.08 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.3
Q ss_pred cCCcccCHHHHHHcCCccee
Q 021957 263 DRDYFMSPKEAKDYGLIDGV 282 (305)
Q Consensus 263 ~rd~~lta~EA~eyGLID~I 282 (305)
.....|+-+||++.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 34466899999999999964
No 196
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=22.63 E-value=97 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCCHHH-----HHhhhc--CCcccCHHHHHH
Q 021957 239 HKANLNGYLAYHTGQSLEK-----INQDTD--RDYFMSPKEAKD 275 (305)
Q Consensus 239 ~k~~i~~~la~~TG~s~e~-----I~~~~~--rd~~lta~EA~e 275 (305)
++++++. ++++||++... |++.++ .|+|| |.+|++
T Consensus 16 ~~eRL~~-Ls~~tgrtkayyvrEaIE~~ieemED~yl-A~~ale 57 (80)
T COG4710 16 LKERLDN-LSKNTGRTKAYYVREAIEAYIEEMEDFYL-AVNALE 57 (80)
T ss_pred HHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3455555 58999998643 333222 24554 666654
No 197
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=22.37 E-value=1e+02 Score=25.48 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHcCCCHHHHHhhhcCCcccCHHHHHHcC
Q 021957 245 GYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYG 277 (305)
Q Consensus 245 ~~la~~TG~s~e~I~~~~~rd~~lta~EA~eyG 277 (305)
+-+|+..|.+...|.+++.+..-+|++-|+.++
T Consensus 27 ~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 27 TELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 446778888888888888888888888887654
No 198
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.08 E-value=2.1e+02 Score=26.89 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=43.5
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEE-E-eCCCCcHHHHHHHHHHHHhcCCCeEEEEe
Q 021957 121 RIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIY-V-NSPGGSVTAGMAIFDTMKHIRPDVSTVCV 186 (305)
Q Consensus 121 RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~-I-NSPGGsV~ag~aIyd~I~~~k~pV~Tvv~ 186 (305)
||+|+|.-+-..=...+...|..+..+.+. ++.+- - |.-||. .-...+++.|.....++.|...
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlGN 66 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-DFVIANGENAAGGK-GITPKIAKELLSAGVDVITMGN 66 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-CEEEECCccccCCC-CCCHHHHHHHHhcCCCEEEecc
Confidence 689999888877667777777777665432 33321 1 455553 1236889999999999888853
No 199
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.63 E-value=2.9e+02 Score=27.25 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=43.4
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhh---cCCCCCEEEEEeCCCCcHHHHHHHHHHH---HhcCCCeEEEEecccchH
Q 021957 122 IIRCGGAVDDDMANIIVAQLLYLDA---IDPHKDIVIYVNSPGGSVTAGMAIFDTM---KHIRPDVSTVCVGLAASM 192 (305)
Q Consensus 122 II~Lgg~Idd~~a~~iiaqLl~L~~---~d~~k~I~L~INSPGGsV~ag~aIyd~I---~~~k~pV~Tvv~G~AASa 192 (305)
|+.+|-+.+..-++.+...|..... ++..++=.+.|||-+-...+-...++.+ +...+++.+++.|.-++.
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 3567888888777887777754221 1223344677898887776644444444 444455677777755443
No 200
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=21.48 E-value=2.1e+02 Score=27.37 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=45.6
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHH--HHHHHHHH
Q 021957 119 QHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVT--AGMAIFDT 173 (305)
Q Consensus 119 ~~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~--ag~aIyd~ 173 (305)
..|+.=..+.++......+.++|..|+++...+-.++.|.|-||.-- .+..++|.
T Consensus 33 ~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 33 SQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred cceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 45777888999999999999999999999888999999999998753 44555555
No 201
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.22 E-value=2.1e+02 Score=28.93 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=44.6
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhcCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc--CCCeEEEEecccc
Q 021957 120 HRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHI--RPDVSTVCVGLAA 190 (305)
Q Consensus 120 ~RII~Lgg~Idd~~a~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~I~~~--k~pV~Tvv~G~AA 190 (305)
...|.+|.+.|-+. .+-|.|+..++.++.|.||+-+- ..+....++.+.. ++||+++..|...
T Consensus 178 s~~vs~Gn~~d~~~----~d~l~~l~~D~~t~~I~ly~E~~----~~~~~f~~aa~~a~~~KPVv~~k~Grs~ 242 (447)
T TIGR02717 178 SYFVSLGNKADIDE----SDLLEYLADDPDTKVILLYLEGI----KDGRKFLKTAREISKKKPIVVLKSGTSE 242 (447)
T ss_pred ceEEECCchhhCCH----HHHHHHHhhCCCCCEEEEEecCC----CCHHHHHHHHHHHcCCCCEEEEecCCCh
Confidence 34677888865433 34567778888899999999963 3355566666655 5899999887754
No 202
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.85 E-value=76 Score=28.20 Aligned_cols=29 Identities=34% Similarity=0.753 Sum_probs=20.5
Q ss_pred CC-CcHHHHH------HHHHHHHhcCCCeEEEEecc
Q 021957 160 PG-GSVTAGM------AIFDTMKHIRPDVSTVCVGL 188 (305)
Q Consensus 160 PG-GsV~ag~------aIyd~I~~~k~pV~Tvv~G~ 188 (305)
|| |...+++ .+.+.++..+.||..+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 7766653 35677777778888877764
Done!