Query 021958
Match_columns 305
No_of_seqs 298 out of 2441
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 7.6E-38 2.6E-42 259.1 18.1 170 80-256 14-183 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 1.1E-36 3.6E-41 248.8 20.9 180 76-260 8-189 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 2.3E-36 7.7E-41 240.1 20.7 166 82-253 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.4E-36 1.2E-40 239.7 20.3 165 80-251 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 5.7E-36 1.9E-40 238.1 20.5 164 81-251 2-167 (167)
6 2qfj_A FBP-interacting repress 100.0 5.6E-36 1.9E-40 248.2 19.3 176 79-257 26-208 (216)
7 3nmr_A Cugbp ELAV-like family 100.0 5.8E-35 2E-39 234.1 20.6 168 80-252 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 3.3E-36 1.1E-40 239.7 12.0 165 80-254 2-166 (167)
9 2g4b_A Splicing factor U2AF 65 100.0 2.6E-33 8.9E-38 223.9 19.1 159 80-252 3-172 (172)
10 1fje_B Nucleolin RBD12, protei 100.0 3.5E-34 1.2E-38 229.8 12.5 166 77-254 9-174 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 4.4E-33 1.5E-37 227.7 19.1 167 80-256 3-196 (198)
12 3smz_A Protein raver-1, ribonu 100.0 8.8E-33 3E-37 238.6 21.5 173 80-257 94-267 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-32 3.9E-37 237.7 21.2 165 77-252 5-281 (282)
14 3smz_A Protein raver-1, ribonu 100.0 1.4E-32 4.7E-37 237.4 21.7 171 80-273 21-191 (284)
15 2adc_A Polypyrimidine tract-bi 100.0 1.8E-32 6.3E-37 229.2 20.2 163 79-254 32-228 (229)
16 3tyt_A Heterogeneous nuclear r 100.0 8.3E-33 2.8E-37 226.8 17.2 161 80-250 3-203 (205)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-32 4.4E-37 238.5 19.4 180 76-273 36-217 (292)
18 2ghp_A U4/U6 snRNA-associated 100.0 3.1E-32 1.1E-36 236.1 17.4 170 80-254 116-291 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 3.6E-32 1.2E-36 222.4 15.8 161 81-254 3-197 (198)
20 3sde_A Paraspeckle component 1 100.0 6.1E-31 2.1E-35 224.2 19.7 161 77-257 18-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 2E-25 6.9E-30 175.7 15.6 145 110-257 2-153 (158)
22 2i2y_A Fusion protein consists 99.9 1.2E-23 4.1E-28 164.0 11.8 128 119-255 9-149 (150)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-22 7.5E-27 145.2 11.7 81 172-253 18-98 (99)
24 4f25_A Polyadenylate-binding p 99.9 2.1E-22 7.2E-27 149.6 10.3 106 80-189 4-113 (115)
25 2lea_A Serine/arginine-rich sp 99.9 5.3E-22 1.8E-26 151.5 7.9 126 125-258 6-131 (135)
26 3s8s_A Histone-lysine N-methyl 99.9 4.5E-21 1.6E-25 140.9 12.1 84 171-255 4-87 (110)
27 2lxi_A RNA-binding protein 10; 99.9 6.4E-22 2.2E-26 140.6 7.2 84 173-257 1-86 (91)
28 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.8E-21 1.6E-25 151.6 11.4 130 128-258 11-156 (165)
29 2lkz_A RNA-binding protein 5; 99.8 2.1E-21 7.2E-26 138.5 7.2 80 173-253 9-94 (95)
30 3md1_A Nuclear and cytoplasmic 99.8 1.6E-20 5.5E-25 131.0 11.6 82 173-255 1-82 (83)
31 2dgo_A Cytotoxic granule-assoc 99.8 5.3E-20 1.8E-24 136.7 14.3 92 167-259 9-100 (115)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.3E-25 132.3 10.7 83 171-254 4-86 (87)
33 2x1f_A MRNA 3'-END-processing 99.8 1.9E-20 6.6E-25 134.4 11.2 85 172-257 1-85 (96)
34 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-20 5.1E-25 135.5 10.3 81 80-162 18-98 (99)
35 2dnz_A Probable RNA-binding pr 99.8 3.9E-20 1.3E-24 132.6 12.4 87 171-258 3-89 (95)
36 4f25_A Polyadenylate-binding p 99.8 1.7E-20 5.9E-25 139.2 10.8 82 173-257 5-86 (115)
37 1whw_A Hypothetical protein ri 99.8 3.7E-20 1.3E-24 133.7 12.2 88 170-258 5-92 (99)
38 2cq0_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 135.1 11.8 89 168-257 10-98 (103)
39 2cqc_A Arginine/serine-rich sp 99.8 5.2E-20 1.8E-24 131.8 12.4 86 167-253 9-94 (95)
40 2dgs_A DAZ-associated protein 99.8 6.1E-20 2.1E-24 132.6 12.8 88 169-258 6-93 (99)
41 2cpz_A CUG triplet repeat RNA- 99.8 4.1E-20 1.4E-24 137.3 11.9 90 168-258 20-109 (115)
42 2do4_A Squamous cell carcinoma 99.8 8.7E-20 3E-24 132.0 13.3 88 168-257 12-99 (100)
43 3p5t_L Cleavage and polyadenyl 99.8 8.1E-21 2.8E-25 134.7 7.5 82 174-256 2-85 (90)
44 1x5u_A Splicing factor 3B subu 99.8 6.3E-20 2.2E-24 134.0 12.4 89 168-257 10-98 (105)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3E-20 1E-24 130.3 10.2 82 170-252 4-85 (85)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.5E-20 1.5E-24 134.0 11.3 89 169-258 8-96 (102)
47 1x5t_A Splicing factor 3B subu 99.8 3.4E-20 1.1E-24 133.1 10.3 87 171-258 3-90 (96)
48 2dnm_A SRP46 splicing factor; 99.8 4.4E-20 1.5E-24 134.3 10.8 90 168-258 8-97 (103)
49 2e5h_A Zinc finger CCHC-type a 99.8 7E-20 2.4E-24 130.9 11.6 84 168-252 11-94 (94)
50 2jrs_A RNA-binding protein 39; 99.8 5.1E-20 1.8E-24 135.0 10.9 87 168-255 21-107 (108)
51 1x4h_A RNA-binding protein 28; 99.8 1.4E-19 4.7E-24 133.5 13.1 90 168-258 10-105 (111)
52 2cpf_A RNA binding motif prote 99.8 7.6E-20 2.6E-24 131.8 11.1 87 171-258 3-92 (98)
53 2fy1_A RNA-binding motif prote 99.8 9.4E-20 3.2E-24 135.4 11.9 86 171-258 5-90 (116)
54 2div_A TRNA selenocysteine ass 99.8 7.7E-20 2.6E-24 132.0 11.1 86 170-256 6-96 (99)
55 2dhg_A TRNA selenocysteine ass 99.8 9.9E-20 3.4E-24 132.7 11.7 90 168-259 4-95 (104)
56 1x5s_A Cold-inducible RNA-bind 99.8 6.3E-20 2.1E-24 133.3 10.6 89 169-258 8-96 (102)
57 2d9p_A Polyadenylate-binding p 99.8 1.2E-19 4E-24 132.1 12.0 88 168-258 10-97 (103)
58 2kxn_B Transformer-2 protein h 99.8 7.1E-20 2.4E-24 138.5 11.2 87 168-255 41-127 (129)
59 2dnh_A Bruno-like 5, RNA bindi 99.8 2.1E-19 7.2E-24 131.2 13.2 88 168-257 10-100 (105)
60 2cph_A RNA binding motif prote 99.8 1.7E-19 6E-24 132.1 12.7 90 168-258 10-101 (107)
61 1p27_B RNA-binding protein 8A; 99.8 7.7E-20 2.6E-24 133.7 10.7 85 170-255 20-104 (106)
62 2la6_A RNA-binding protein FUS 99.8 9.3E-20 3.2E-24 131.6 10.9 84 168-252 8-99 (99)
63 2cpe_A RNA-binding protein EWS 99.8 1.5E-19 5.1E-24 133.8 12.2 90 168-258 10-107 (113)
64 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.4E-24 139.3 12.2 90 168-258 37-126 (139)
65 3ns6_A Eukaryotic translation 99.8 1.4E-20 4.8E-25 136.1 6.4 84 171-255 4-94 (100)
66 2dng_A Eukaryotic translation 99.8 2.8E-19 9.5E-24 130.0 13.0 88 168-258 10-97 (103)
67 2cqd_A RNA-binding region cont 99.8 2E-19 6.8E-24 133.8 12.4 89 168-258 12-100 (116)
68 2kt5_A RNA and export factor-b 99.8 2.6E-19 8.9E-24 134.7 13.2 88 168-257 30-117 (124)
69 1oo0_B CG8781-PA, drosophila Y 99.8 1E-19 3.5E-24 134.0 10.6 86 170-256 23-108 (110)
70 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4.1E-24 130.8 10.6 82 170-258 13-96 (105)
71 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-19 4.3E-24 132.6 10.5 89 168-257 8-99 (106)
72 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-19 7.1E-24 131.0 11.4 88 168-258 10-98 (104)
73 2khc_A Testis-specific RNP-typ 99.8 7.7E-20 2.6E-24 136.4 9.3 84 168-252 35-118 (118)
74 2dh8_A DAZ-associated protein 99.8 2.4E-19 8.2E-24 130.9 11.7 89 168-258 11-99 (105)
75 1u6f_A Tcubp1, RNA-binding pro 99.8 1E-18 3.4E-23 134.2 15.5 87 77-165 38-124 (139)
76 3n9u_C Cleavage and polyadenyl 99.8 1.1E-19 3.8E-24 141.9 10.2 82 172-254 54-137 (156)
77 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5.1E-24 129.0 10.0 81 168-255 16-98 (100)
78 3ex7_B RNA-binding protein 8A; 99.8 1.2E-19 4.2E-24 136.9 10.1 89 169-258 18-106 (126)
79 2cq3_A RNA-binding protein 9; 99.8 8E-19 2.8E-23 127.6 14.0 88 168-258 10-97 (103)
80 3s8s_A Histone-lysine N-methyl 99.8 1.9E-19 6.6E-24 132.2 10.7 81 80-162 5-85 (110)
81 2ywk_A Putative RNA-binding pr 99.8 2.2E-19 7.5E-24 128.6 10.6 83 169-253 12-94 (95)
82 2do0_A HnRNP M, heterogeneous 99.8 8.1E-19 2.8E-23 130.0 14.0 87 169-257 11-97 (114)
83 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.6E-19 2.2E-23 128.1 13.2 88 168-258 10-97 (103)
84 3ucg_A Polyadenylate-binding p 99.8 2.4E-19 8.2E-24 126.8 10.4 80 173-254 6-85 (89)
85 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.9E-24 127.2 9.6 83 172-255 3-86 (88)
86 2dgx_A KIAA0430 protein; RRM d 99.8 3.4E-19 1.2E-23 127.8 11.2 83 171-257 7-93 (96)
87 2cqg_A TDP-43, TAR DNA-binding 99.8 9.8E-19 3.3E-23 127.1 13.7 89 167-258 9-97 (103)
88 2dgv_A HnRNP M, heterogeneous 99.8 3.4E-19 1.1E-23 126.8 11.0 85 170-257 5-89 (92)
89 3ulh_A THO complex subunit 4; 99.8 4E-19 1.4E-23 130.2 11.5 83 168-252 24-106 (107)
90 1x4e_A RNA binding motif, sing 99.8 7E-20 2.4E-24 128.4 7.1 82 171-253 3-84 (85)
91 2rs2_A Musashi-1, RNA-binding 99.8 3.1E-19 1.1E-23 131.0 10.6 87 169-257 21-107 (109)
92 2m2b_A RNA-binding protein 10; 99.8 8.7E-20 3E-24 138.7 7.9 88 168-257 18-111 (131)
93 2cqp_A RNA-binding protein 12; 99.8 2.5E-19 8.6E-24 129.1 9.9 84 170-254 12-95 (98)
94 2cq1_A PTB-like protein L; RRM 99.8 7.2E-19 2.5E-23 126.7 12.1 84 168-258 10-95 (101)
95 2dgw_A Probable RNA-binding pr 99.8 7E-19 2.4E-23 124.9 11.9 84 169-256 6-89 (91)
96 1p1t_A Cleavage stimulation fa 99.8 2E-19 6.8E-24 131.0 9.1 85 172-257 7-91 (104)
97 3s7r_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 124.5 10.9 81 169-251 7-87 (87)
98 2ek1_A RNA-binding protein 12; 99.8 1.6E-19 5.5E-24 129.3 8.2 82 171-253 13-94 (95)
99 2lxi_A RNA-binding protein 10; 99.8 5.9E-20 2E-24 130.3 5.9 82 81-164 1-84 (91)
100 2ad9_A Polypyrimidine tract-bi 99.8 6.5E-19 2.2E-23 130.1 11.6 84 168-258 26-111 (119)
101 1x5u_A Splicing factor 3B subu 99.8 1.2E-18 4E-23 127.2 12.9 87 76-164 10-96 (105)
102 2wbr_A GW182, gawky, LD47780P; 99.8 3.1E-19 1E-23 122.8 9.1 73 173-252 7-79 (89)
103 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4E-23 129.4 13.0 88 76-165 20-107 (115)
104 1wex_A Hypothetical protein (r 99.8 8.9E-19 3E-23 127.0 11.9 84 168-258 10-95 (104)
105 2la6_A RNA-binding protein FUS 99.8 8.4E-19 2.9E-23 126.5 11.7 81 79-161 11-99 (99)
106 3pgw_S U1-70K; protein-RNA com 99.8 7.7E-20 2.6E-24 165.7 7.5 87 170-257 99-185 (437)
107 2dgo_A Cytotoxic granule-assoc 99.8 1.7E-18 5.8E-23 128.5 13.5 89 75-165 9-97 (115)
108 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.8E-19 3E-23 137.2 12.5 89 169-258 35-123 (156)
109 2err_A Ataxin-2-binding protei 99.8 4.2E-19 1.4E-23 130.4 10.0 84 168-254 24-107 (109)
110 2mss_A Protein (musashi1); RNA 99.8 1.6E-19 5.6E-24 123.3 7.0 75 175-251 1-75 (75)
111 1s79_A Lupus LA protein; RRM, 99.8 2.3E-19 7.7E-24 130.1 8.0 81 170-253 8-88 (103)
112 1x4d_A Matrin 3; structural ge 99.8 4.1E-19 1.4E-23 127.9 9.2 83 168-257 10-95 (102)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-19 4.2E-24 131.2 6.4 83 170-255 16-99 (100)
114 2lkz_A RNA-binding protein 5; 99.8 1.5E-19 5E-24 128.9 6.7 85 78-162 6-94 (95)
115 2cpi_A CCR4-NOT transcription 99.8 6.4E-19 2.2E-23 129.9 10.4 87 170-257 12-104 (111)
116 2jwn_A Embryonic polyadenylate 99.8 8.5E-19 2.9E-23 131.9 11.2 84 172-257 35-118 (124)
117 2khc_A Testis-specific RNP-typ 99.8 1E-18 3.4E-23 130.3 11.5 84 76-161 35-118 (118)
118 4f02_A Polyadenylate-binding p 99.8 5.5E-19 1.9E-23 145.6 11.0 114 170-288 12-129 (213)
119 2jrs_A RNA-binding protein 39; 99.8 2.2E-18 7.5E-23 126.3 12.8 87 75-163 20-106 (108)
120 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.9E-23 124.3 11.5 85 76-162 10-94 (95)
121 1x4b_A Heterogeneous nuclear r 99.8 9.8E-19 3.4E-23 130.0 11.0 86 171-258 25-110 (116)
122 2cq0_A Eukaryotic translation 99.8 1.9E-18 6.4E-23 125.6 12.2 87 76-164 10-96 (103)
123 1b7f_A Protein (SXL-lethal pro 99.8 1.5E-18 5.2E-23 137.3 12.6 85 172-257 2-86 (168)
124 3lqv_A PRE-mRNA branch site pr 99.8 3.6E-19 1.2E-23 132.1 8.4 104 79-200 6-109 (115)
125 1fxl_A Paraneoplastic encephal 99.8 2.3E-18 7.8E-23 136.0 13.5 109 173-288 2-114 (167)
126 1x4a_A Splicing factor, argini 99.8 2.8E-18 9.4E-23 126.1 13.0 85 169-257 18-102 (109)
127 3n9u_C Cleavage and polyadenyl 99.8 6E-19 2.1E-23 137.7 9.8 82 79-162 53-136 (156)
128 2dis_A Unnamed protein product 99.8 8.4E-19 2.9E-23 128.9 10.0 86 171-257 6-95 (109)
129 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.2E-19 3.2E-23 123.2 9.8 82 79-162 4-85 (87)
130 2dnh_A Bruno-like 5, RNA bindi 99.8 4E-18 1.4E-22 124.3 13.5 86 78-164 12-98 (105)
131 2dnz_A Probable RNA-binding pr 99.8 3.2E-18 1.1E-22 122.5 12.7 84 79-164 3-86 (95)
132 2cph_A RNA binding motif prote 99.8 3.1E-18 1.1E-22 125.3 12.9 88 76-165 10-99 (107)
133 2cq4_A RNA binding motif prote 99.8 3E-19 1E-23 132.3 7.5 84 172-257 24-107 (114)
134 2dgs_A DAZ-associated protein 99.8 3.1E-18 1.1E-22 123.5 12.6 86 77-165 6-91 (99)
135 1whw_A Hypothetical protein ri 99.8 2.2E-18 7.6E-23 124.3 11.6 86 78-165 5-90 (99)
136 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.8E-23 122.2 9.6 81 79-161 5-85 (85)
137 2dgp_A Bruno-like 4, RNA bindi 99.8 2.9E-18 1E-22 125.3 12.1 89 77-165 9-98 (106)
138 3p5t_L Cleavage and polyadenyl 99.8 4.5E-19 1.5E-23 125.6 7.4 80 82-163 2-83 (90)
139 3md1_A Nuclear and cytoplasmic 99.8 1.6E-18 5.5E-23 120.8 10.1 81 81-163 1-81 (83)
140 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-19 1E-23 122.7 6.3 76 174-251 1-76 (77)
141 1l3k_A Heterogeneous nuclear r 99.8 2.1E-18 7.1E-23 140.1 12.2 118 169-288 9-130 (196)
142 2dnm_A SRP46 splicing factor; 99.8 1.8E-18 6.1E-23 125.7 10.6 86 77-164 9-94 (103)
143 1x5o_A RNA binding motif, sing 99.8 2.2E-18 7.6E-23 127.6 11.2 85 168-254 20-112 (114)
144 1x4h_A RNA-binding protein 28; 99.8 4.6E-18 1.6E-22 125.3 12.9 86 77-164 11-102 (111)
145 2ki2_A SS-DNA binding protein 99.8 1.1E-19 3.9E-24 128.7 3.9 82 174-257 2-83 (90)
146 2dnq_A RNA-binding protein 4B; 99.8 4.1E-18 1.4E-22 120.6 12.0 80 170-258 5-84 (90)
147 2fc9_A NCL protein; structure 99.8 3E-18 1E-22 124.1 11.5 84 169-257 11-94 (101)
148 2d9p_A Polyadenylate-binding p 99.8 7.3E-18 2.5E-22 122.5 13.5 86 76-165 10-95 (103)
149 2kxn_B Transformer-2 protein h 99.8 2.2E-18 7.4E-23 130.3 11.0 86 76-163 41-126 (129)
150 2do4_A Squamous cell carcinoma 99.8 4.9E-18 1.7E-22 122.7 12.5 84 77-163 13-96 (100)
151 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.9E-18 6.4E-23 132.8 10.8 83 168-251 58-140 (140)
152 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-18 8.7E-23 122.7 10.8 82 78-161 13-94 (94)
153 1x5s_A Cold-inducible RNA-bind 99.8 3.6E-18 1.2E-22 123.9 11.7 86 78-165 9-94 (102)
154 2cpy_A RNA-binding protein 12; 99.8 7E-19 2.4E-23 130.3 7.9 84 169-255 11-95 (114)
155 3ns6_A Eukaryotic translation 99.8 1E-18 3.5E-23 126.3 8.5 81 79-161 4-91 (100)
156 2la4_A Nuclear and cytoplasmic 99.8 2.1E-18 7.1E-23 124.9 10.1 77 171-254 25-101 (101)
157 2fc8_A NCL protein; structure 99.8 5.5E-18 1.9E-22 122.9 12.4 87 168-258 10-96 (102)
158 1p27_B RNA-binding protein 8A; 99.8 2.8E-18 9.5E-23 125.4 10.9 84 78-163 20-103 (106)
159 1why_A Hypothetical protein ri 99.8 2.7E-18 9.2E-23 123.4 10.6 80 170-256 14-95 (97)
160 2div_A TRNA selenocysteine ass 99.8 2.9E-18 1E-22 123.6 10.8 84 78-163 6-94 (99)
161 1x4g_A Nucleolysin TIAR; struc 99.8 4.1E-18 1.4E-22 125.2 11.6 83 170-259 22-104 (109)
162 1fj7_A Nucleolin RBD1, protein 99.8 1.7E-19 5.8E-24 130.7 4.0 86 170-258 14-99 (101)
163 2hvz_A Splicing factor, argini 99.8 1.2E-18 4.2E-23 126.1 8.6 94 82-182 1-100 (101)
164 2nlw_A Eukaryotic translation 99.8 1.5E-18 5E-23 126.6 9.0 85 169-256 11-102 (105)
165 1wg5_A Heterogeneous nuclear r 99.8 2.9E-18 9.9E-23 124.8 10.5 84 169-255 11-95 (104)
166 2x1f_A MRNA 3'-END-processing 99.8 2E-18 6.9E-23 123.8 9.4 81 81-163 2-82 (96)
167 1x4c_A Splicing factor, argini 99.8 7.7E-18 2.6E-22 123.4 12.7 80 171-258 13-97 (108)
168 2a3j_A U1 small nuclear ribonu 99.8 1.9E-18 6.4E-23 129.9 9.5 84 170-257 26-113 (127)
169 2cpe_A RNA-binding protein EWS 99.8 4E-18 1.4E-22 126.0 11.2 88 76-165 10-105 (113)
170 2hvz_A Splicing factor, argini 99.8 1.5E-18 5E-23 125.7 8.6 79 174-258 1-79 (101)
171 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 124.9 9.6 86 78-165 9-94 (102)
172 2dng_A Eukaryotic translation 99.8 9E-18 3.1E-22 122.0 12.6 85 77-165 11-95 (103)
173 2cpf_A RNA binding motif prote 99.8 4.1E-18 1.4E-22 122.6 10.7 85 79-165 3-90 (98)
174 2dgu_A Heterogeneous nuclear r 99.8 7.4E-18 2.5E-22 122.5 12.0 81 170-259 8-88 (103)
175 2fy1_A RNA-binding motif prote 99.8 5.7E-18 2E-22 125.7 11.6 85 77-164 3-87 (116)
176 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-17 3.6E-22 121.7 12.8 87 76-166 10-96 (103)
177 2db1_A Heterogeneous nuclear r 99.8 1.5E-18 5.2E-23 129.2 8.5 83 170-255 14-99 (118)
178 2hgl_A HNRPF protein, heteroge 99.8 1E-18 3.6E-23 132.8 7.7 83 169-254 40-125 (136)
179 2dhg_A TRNA selenocysteine ass 99.8 9.7E-18 3.3E-22 122.0 12.5 85 77-164 5-91 (104)
180 2ytc_A PRE-mRNA-splicing facto 99.8 4.8E-18 1.6E-22 118.9 10.5 77 169-252 8-85 (85)
181 2cpj_A Non-POU domain-containi 99.8 3.8E-18 1.3E-22 123.1 10.2 83 168-257 10-92 (99)
182 1wez_A HnRNP H', FTP-3, hetero 99.8 2.2E-18 7.4E-23 124.9 8.8 84 170-257 12-95 (102)
183 2cpx_A Hypothetical protein FL 99.8 1.2E-18 3.9E-23 129.4 7.3 88 170-258 22-109 (115)
184 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-18 3.9E-23 126.0 7.1 82 78-163 16-98 (100)
185 1x5t_A Splicing factor 3B subu 99.8 2.9E-18 1E-22 122.9 9.2 84 79-164 3-87 (96)
186 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.3E-23 127.2 7.3 83 169-258 21-106 (112)
187 1x4e_A RNA binding motif, sing 99.8 1.7E-18 5.7E-23 121.3 7.5 81 79-161 3-83 (85)
188 1wel_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 132.4 5.8 85 169-255 21-105 (124)
189 2m2b_A RNA-binding protein 10; 99.8 3.9E-18 1.3E-22 129.5 9.8 84 77-163 19-108 (131)
190 2krb_A Eukaryotic translation 99.8 1.3E-18 4.4E-23 120.7 6.5 74 173-249 1-81 (81)
191 2cpd_A Apobec-1 stimulating pr 99.8 2.5E-17 8.6E-22 118.7 13.6 81 168-257 10-92 (99)
192 2jvo_A Nucleolar protein 3; nu 99.8 6.7E-18 2.3E-22 123.6 10.7 80 168-256 26-105 (108)
193 3q2s_C Cleavage and polyadenyl 99.8 1.6E-18 5.6E-23 143.9 8.3 82 172-254 67-150 (229)
194 2cqd_A RNA-binding region cont 99.8 1.3E-17 4.3E-22 124.0 12.2 85 76-163 12-96 (116)
195 2dnp_A RNA-binding protein 14; 99.8 9.4E-18 3.2E-22 118.8 11.0 81 168-257 4-84 (90)
196 1oo0_B CG8781-PA, drosophila Y 99.7 4.1E-18 1.4E-22 125.3 9.5 85 77-163 22-106 (110)
197 2xnq_A Nuclear polyadenylated 99.7 9.7E-18 3.3E-22 120.3 11.1 78 169-255 18-96 (97)
198 1wi8_A EIF-4B, eukaryotic tran 99.7 1.2E-17 4E-22 121.6 11.7 83 79-165 13-96 (104)
199 1nu4_A U1A RNA binding domain; 99.7 2E-18 7E-23 124.0 7.5 83 170-256 5-91 (97)
200 2dgt_A RNA-binding protein 30; 99.7 2E-17 6.9E-22 117.5 12.6 81 168-257 5-85 (92)
201 1wf1_A RNA-binding protein RAL 99.7 1.1E-17 3.6E-22 123.1 11.4 96 152-257 7-103 (110)
202 1sjq_A Polypyrimidine tract-bi 99.7 5.7E-18 2E-22 122.0 9.7 81 78-166 13-95 (105)
203 2cqp_A RNA-binding protein 12; 99.7 3.8E-18 1.3E-22 122.8 8.8 85 77-163 11-95 (98)
204 2cq3_A RNA-binding protein 9; 99.7 2.6E-17 8.9E-22 119.5 13.2 86 76-165 10-95 (103)
205 1p1t_A Cleavage stimulation fa 99.7 2.8E-18 9.6E-23 124.9 8.1 83 79-163 6-88 (104)
206 1s79_A Lupus LA protein; RRM, 99.7 6E-18 2E-22 122.6 9.7 80 78-161 8-87 (103)
207 2e5j_A Methenyltetrahydrofolat 99.7 8.9E-18 3.1E-22 120.6 10.5 82 169-256 15-96 (97)
208 2hgn_A Heterogeneous nuclear r 99.7 5.9E-19 2E-23 134.5 4.4 125 124-257 2-126 (139)
209 2rs2_A Musashi-1, RNA-binding 99.7 5.1E-18 1.7E-22 124.6 9.2 85 76-163 20-104 (109)
210 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-18 1.5E-22 124.6 8.8 79 171-254 26-105 (111)
211 2ywk_A Putative RNA-binding pr 99.7 7.5E-18 2.6E-22 120.5 9.9 82 77-161 12-93 (95)
212 1iqt_A AUF1, heterogeneous nuc 99.7 8.7E-19 3E-23 119.7 4.6 75 175-251 1-75 (75)
213 3md3_A Nuclear and cytoplasmic 99.7 1.1E-17 3.8E-22 131.9 11.8 110 174-289 1-114 (166)
214 2dnn_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 124.5 8.5 78 173-254 16-93 (109)
215 1fjc_A Nucleolin RBD2, protein 99.7 3.3E-18 1.1E-22 122.6 7.9 83 169-257 12-94 (96)
216 3lqv_A PRE-mRNA branch site pr 99.7 7E-18 2.4E-22 125.1 9.8 84 170-257 5-88 (115)
217 3s7r_A Heterogeneous nuclear r 99.7 7E-18 2.4E-22 118.6 9.3 81 77-160 7-87 (87)
218 2cq4_A RNA binding motif prote 99.7 3.2E-18 1.1E-22 126.8 7.5 82 78-162 22-103 (114)
219 2cqg_A TDP-43, TAR DNA-binding 99.7 4E-17 1.4E-21 118.6 13.2 86 76-165 10-95 (103)
220 2dh8_A DAZ-associated protein 99.7 1.4E-17 4.9E-22 121.4 10.8 85 77-164 12-96 (105)
221 2e5g_A U6 snRNA-specific termi 99.7 2.5E-17 8.6E-22 117.5 11.8 81 171-258 6-86 (94)
222 2do0_A HnRNP M, heterogeneous 99.7 4.5E-17 1.5E-21 120.5 13.5 84 77-163 11-94 (114)
223 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-18 4.9E-23 127.1 5.3 84 169-255 7-93 (107)
224 2lcw_A RNA-binding protein FUS 99.6 1.5E-19 5.2E-24 134.4 0.0 87 170-257 4-98 (116)
225 2err_A Ataxin-2-binding protei 99.7 5.9E-18 2E-22 124.2 8.3 83 77-163 25-107 (109)
226 3ulh_A THO complex subunit 4; 99.7 1.4E-17 4.7E-22 121.9 10.3 82 77-161 25-106 (107)
227 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-17 9.7E-22 116.8 11.6 82 78-163 5-86 (92)
228 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.6E-22 118.2 9.2 80 80-162 5-84 (89)
229 2mss_A Protein (musashi1); RNA 99.7 5.1E-18 1.7E-22 115.8 7.2 75 83-160 1-75 (75)
230 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-17 9.4E-22 122.9 11.6 81 171-257 26-109 (130)
231 3ex7_B RNA-binding protein 8A; 99.7 1.5E-17 5.1E-22 125.4 10.4 85 77-163 18-102 (126)
232 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-17 3.7E-22 119.2 9.1 81 170-258 5-87 (93)
233 1x4a_A Splicing factor, argini 99.7 8.1E-17 2.8E-21 118.2 13.8 84 76-164 17-100 (109)
234 2cq1_A PTB-like protein L; RRM 99.7 2.2E-17 7.5E-22 118.9 10.4 83 76-166 10-94 (101)
235 1x5o_A RNA binding motif, sing 99.7 8.4E-17 2.9E-21 119.1 13.7 85 77-162 21-111 (114)
236 2kvi_A Nuclear polyadenylated 99.7 1E-17 3.4E-22 120.1 8.4 79 170-257 7-86 (96)
237 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.8E-22 117.8 8.5 82 80-163 3-85 (88)
238 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-17 7.3E-22 128.1 10.6 82 171-257 44-127 (164)
239 2ki2_A SS-DNA binding protein 99.7 4E-18 1.4E-22 120.7 5.9 79 82-163 2-80 (90)
240 1wex_A Hypothetical protein (r 99.7 4.8E-17 1.6E-21 117.8 11.7 82 79-166 13-94 (104)
241 1x5p_A Negative elongation fac 99.7 1.1E-16 3.9E-21 114.8 13.4 81 169-258 11-91 (97)
242 2ek1_A RNA-binding protein 12; 99.7 6.7E-18 2.3E-22 120.8 6.8 80 80-161 14-93 (95)
243 2diu_A KIAA0430 protein; struc 99.7 5.3E-17 1.8E-21 112.7 11.0 77 171-258 6-88 (96)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.7E-17 9.2E-22 126.3 10.5 82 77-160 59-140 (140)
245 2kt5_A RNA and export factor-b 99.7 3.2E-17 1.1E-21 123.2 10.6 84 77-163 31-114 (124)
246 1wg5_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 117.9 11.6 82 78-163 12-94 (104)
247 1whx_A Hypothetical protein ri 99.7 1.7E-17 5.9E-22 122.1 8.9 78 172-256 9-86 (111)
248 2qfj_A FBP-interacting repress 99.7 1.2E-17 4.1E-22 137.7 8.8 82 173-255 28-109 (216)
249 2j8a_A Histone-lysine N-methyl 99.7 1.7E-17 6E-22 121.7 8.6 79 174-253 3-95 (136)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.1E-18 2.8E-22 115.4 6.5 76 82-160 1-76 (77)
251 2wbr_A GW182, gawky, LD47780P; 99.7 1.8E-17 6.3E-22 113.9 8.1 73 80-160 6-78 (89)
252 2lea_A Serine/arginine-rich sp 99.7 1.6E-17 5.6E-22 126.5 8.6 86 76-163 42-127 (135)
253 2dha_A FLJ20171 protein; RRM d 99.7 7E-18 2.4E-22 125.9 6.4 81 171-254 21-105 (123)
254 2dgx_A KIAA0430 protein; RRM d 99.7 4.3E-17 1.5E-21 116.8 10.2 80 79-163 7-90 (96)
255 2f3j_A RNA and export factor b 99.7 2.1E-17 7.2E-22 131.7 9.4 86 169-256 84-169 (177)
256 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-17 1.6E-21 117.8 10.3 82 78-164 12-93 (102)
257 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.4E-17 1.8E-21 127.0 11.5 84 78-163 36-119 (156)
258 2xs2_A Deleted in azoospermia- 99.7 9.6E-18 3.3E-22 121.6 6.7 82 172-257 8-89 (102)
259 1x4b_A Heterogeneous nuclear r 99.7 2.7E-17 9.3E-22 122.1 9.3 85 78-165 24-108 (116)
260 1wg1_A KIAA1579 protein, homol 99.7 3.2E-17 1.1E-21 115.5 9.1 76 172-255 4-79 (88)
261 2dis_A Unnamed protein product 99.7 4.1E-17 1.4E-21 119.7 10.0 84 79-164 6-93 (109)
262 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.9E-22 121.2 7.8 81 169-256 21-108 (114)
263 3nmr_A Cugbp ELAV-like family 99.7 6.3E-17 2.2E-21 128.7 11.9 111 172-288 2-121 (175)
264 2cpi_A CCR4-NOT transcription 99.7 6.4E-17 2.2E-21 119.1 11.0 84 79-164 13-102 (111)
265 2cpy_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 122.9 7.8 82 77-162 11-93 (114)
266 2e44_A Insulin-like growth fac 99.7 4E-17 1.4E-21 117.0 9.6 80 171-255 13-93 (96)
267 2dgw_A Probable RNA-binding pr 99.7 5.4E-17 1.8E-21 115.1 10.1 81 78-163 7-87 (91)
268 1x4d_A Matrin 3; structural ge 99.7 3.8E-17 1.3E-21 117.6 9.2 80 78-163 12-92 (102)
269 3r27_A HnRNP L, heterogeneous 99.7 3.6E-17 1.2E-21 116.6 8.7 79 79-163 19-97 (100)
270 2db1_A Heterogeneous nuclear r 99.7 2.6E-17 8.8E-22 122.5 8.4 80 78-161 14-96 (118)
271 2nlw_A Eukaryotic translation 99.7 2.4E-17 8.1E-22 120.2 8.0 82 77-162 11-99 (105)
272 3egn_A RNA-binding protein 40; 99.7 8.2E-18 2.8E-22 129.7 5.7 86 170-257 42-133 (143)
273 2jwn_A Embryonic polyadenylate 99.7 3.9E-17 1.3E-21 122.8 9.2 82 79-163 34-115 (124)
274 2ad9_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 120.2 9.3 81 78-166 28-110 (119)
275 1wel_A RNA-binding protein 12; 99.7 2.6E-17 8.8E-22 123.7 8.0 81 78-161 22-102 (124)
276 2a3j_A U1 small nuclear ribonu 99.7 8.2E-17 2.8E-21 120.9 10.6 80 79-163 27-110 (127)
277 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 4E-22 125.0 5.9 80 171-254 40-121 (126)
278 2kn4_A Immunoglobulin G-bindin 99.7 9.8E-17 3.4E-21 125.8 11.4 84 78-163 67-150 (158)
279 1x4f_A Matrin 3; structural ge 99.7 1.3E-16 4.4E-21 116.5 11.1 81 78-164 22-103 (112)
280 2hgl_A HNRPF protein, heteroge 99.7 2.6E-17 8.8E-22 125.1 7.7 80 78-161 41-123 (136)
281 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-17 4E-22 120.9 5.6 83 77-163 13-95 (101)
282 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 118.1 11.9 77 174-257 26-105 (124)
283 2krb_A Eukaryotic translation 99.7 2.8E-17 9.5E-22 113.9 7.2 73 81-157 1-80 (81)
284 3q2s_C Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 135.8 9.0 81 79-161 66-148 (229)
285 2lmi_A GRSF-1, G-rich sequence 99.7 2.7E-17 9.2E-22 120.3 7.2 81 77-161 7-90 (107)
286 2fc8_A NCL protein; structure 99.7 1.7E-16 5.9E-21 114.9 11.4 83 77-164 11-93 (102)
287 2fc9_A NCL protein; structure 99.7 1E-16 3.6E-21 115.9 10.1 83 77-165 11-93 (101)
288 2dnq_A RNA-binding protein 4B; 99.7 3.6E-16 1.2E-20 110.5 12.4 78 78-165 5-82 (90)
289 2pe8_A Splicing factor 45; RRM 99.7 2.2E-16 7.4E-21 114.6 11.2 82 171-253 6-93 (105)
290 1iqt_A AUF1, heterogeneous nuc 99.7 2.5E-17 8.5E-22 112.4 5.7 75 83-160 1-75 (75)
291 2jvo_A Nucleolar protein 3; nu 99.7 9.8E-17 3.3E-21 117.4 9.2 77 77-163 27-103 (108)
292 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.3E-21 126.0 10.5 85 78-164 69-153 (165)
293 3pgw_A U1-A; protein-RNA compl 99.7 3.4E-16 1.2E-20 134.4 13.9 83 169-255 5-91 (282)
294 2e5j_A Methenyltetrahydrofolat 99.7 2.9E-16 1E-20 112.6 11.2 80 77-163 15-94 (97)
295 2dnn_A RNA-binding protein 12; 99.7 7.6E-17 2.6E-21 117.8 8.1 78 79-161 14-91 (109)
296 2cpj_A Non-POU domain-containi 99.7 3E-16 1E-20 113.0 11.0 79 77-163 11-89 (99)
297 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.2E-21 112.1 9.2 77 170-256 8-86 (89)
298 1sjr_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 121.4 12.0 83 78-164 43-125 (164)
299 1x4c_A Splicing factor, argini 99.7 3.1E-16 1.1E-20 114.8 11.2 80 79-165 13-95 (108)
300 1why_A Hypothetical protein ri 99.7 4.3E-16 1.5E-20 111.8 11.6 79 79-163 15-93 (97)
301 2cjk_A Nuclear polyadenylated 99.7 2E-17 6.9E-22 130.7 5.0 81 172-255 2-82 (167)
302 2xnq_A Nuclear polyadenylated 99.7 2.3E-16 8E-21 113.1 10.1 76 78-163 19-95 (97)
303 2voo_A Lupus LA protein; RNA-b 99.7 2.4E-16 8.3E-21 127.4 11.0 120 132-256 63-189 (193)
304 3beg_B Splicing factor, argini 99.7 1.2E-16 4.1E-21 118.3 8.4 78 172-257 15-97 (115)
305 2la4_A Nuclear and cytoplasmic 99.7 1.5E-16 5E-21 115.1 8.7 75 80-162 26-100 (101)
306 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.6E-21 109.8 9.8 77 77-161 8-85 (85)
307 2cpx_A Hypothetical protein FL 99.7 1.3E-16 4.6E-21 118.2 8.6 85 78-164 22-106 (115)
308 1fje_B Nucleolin RBD12, protei 99.7 5.2E-17 1.8E-21 129.4 6.5 120 169-295 9-128 (175)
309 1x4g_A Nucleolysin TIAR; struc 99.7 3.8E-16 1.3E-20 114.5 10.6 80 78-165 22-101 (109)
310 3sde_A Paraspeckle component 1 99.7 3.8E-16 1.3E-20 132.7 12.1 80 167-253 16-95 (261)
311 3tyt_A Heterogeneous nuclear r 99.7 2.4E-16 8.3E-21 128.7 10.5 77 172-254 3-80 (205)
312 2adc_A Polypyrimidine tract-bi 99.7 5.7E-16 2E-20 128.9 12.2 81 168-254 29-110 (229)
313 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.6E-21 116.7 7.3 79 79-163 26-105 (111)
314 2bz2_A Negative elongation fac 99.7 3.8E-16 1.3E-20 116.5 9.8 79 170-257 36-114 (121)
315 3u1l_A PRE-mRNA-splicing facto 99.7 2.7E-16 9.3E-21 130.0 9.7 101 151-258 112-233 (240)
316 2hzc_A Splicing factor U2AF 65 99.7 2.4E-16 8.2E-21 110.7 8.0 71 172-250 5-86 (87)
317 2dnl_A Cytoplasmic polyadenyla 99.7 4.9E-16 1.7E-20 114.9 10.0 78 171-252 6-86 (114)
318 1nu4_A U1A RNA binding domain; 99.7 1.4E-16 4.9E-21 114.3 6.8 81 78-163 5-89 (97)
319 2f3j_A RNA and export factor b 99.7 4.4E-16 1.5E-20 124.1 10.2 83 77-162 84-166 (177)
320 3zzy_A Polypyrimidine tract-bi 99.7 6.9E-16 2.4E-20 115.3 10.4 84 77-165 24-108 (130)
321 2dgu_A Heterogeneous nuclear r 99.7 1.1E-15 3.7E-20 110.9 11.2 78 78-165 8-85 (103)
322 2cpd_A Apobec-1 stimulating pr 99.7 1.8E-15 6.1E-20 108.9 12.3 79 77-165 11-91 (99)
323 2xs2_A Deleted in azoospermia- 99.6 1E-16 3.6E-21 116.1 5.5 80 79-163 7-86 (102)
324 2dgt_A RNA-binding protein 30; 99.6 1.2E-15 4.1E-20 108.3 10.8 77 78-164 7-83 (92)
325 1wf0_A TDP-43, TAR DNA-binding 99.6 2.6E-16 8.7E-21 110.8 7.2 79 171-257 3-81 (88)
326 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.6E-21 118.1 6.9 79 79-161 21-103 (123)
327 2hgm_A HNRPF protein, heteroge 99.6 2.6E-16 8.8E-21 117.7 7.6 80 77-161 38-119 (126)
328 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.7E-22 124.3 0.0 85 78-164 4-96 (116)
329 1fjc_A Nucleolin RBD2, protein 99.6 2.9E-16 9.9E-21 112.4 7.2 80 77-163 12-91 (96)
330 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.8E-21 121.9 5.1 81 78-163 43-123 (139)
331 2e44_A Insulin-like growth fac 99.6 1.3E-15 4.5E-20 108.9 10.4 79 79-163 13-92 (96)
332 1wf1_A RNA-binding protein RAL 99.6 2E-15 6.7E-20 110.9 11.6 75 79-163 25-100 (110)
333 2cqh_A IGF-II mRNA-binding pro 99.6 5.9E-16 2E-20 110.1 8.4 77 79-164 6-84 (93)
334 2e5i_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 110.0 13.8 80 79-164 23-103 (124)
335 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.7E-20 107.1 10.4 76 78-163 6-81 (90)
336 2kvi_A Nuclear polyadenylated 99.6 9.8E-16 3.3E-20 109.6 9.3 77 78-164 7-84 (96)
337 1x5p_A Negative elongation fac 99.6 3.3E-15 1.1E-19 107.0 11.8 78 78-165 12-89 (97)
338 1whx_A Hypothetical protein ri 99.6 6.9E-16 2.3E-20 113.5 8.3 76 80-163 9-84 (111)
339 2i2y_A Fusion protein consists 99.6 1.8E-15 6E-20 117.6 11.0 80 77-163 69-148 (150)
340 2j8a_A Histone-lysine N-methyl 99.6 4E-16 1.4E-20 114.5 6.6 78 82-161 3-94 (136)
341 2cq2_A Hypothetical protein LO 99.6 9.7E-16 3.3E-20 111.9 8.1 79 79-163 23-106 (114)
342 2e5g_A U6 snRNA-specific termi 99.6 3.4E-15 1.2E-19 106.4 10.8 77 79-163 6-82 (94)
343 1qm9_A Polypyrimidine tract-bi 99.6 9.6E-16 3.3E-20 124.6 9.0 76 173-254 3-79 (198)
344 3d2w_A TAR DNA-binding protein 99.6 6.6E-16 2.3E-20 108.8 6.9 76 79-163 9-84 (89)
345 2diu_A KIAA0430 protein; struc 99.6 7.6E-15 2.6E-19 101.9 11.3 71 82-164 10-85 (96)
346 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 109.3 9.0 82 171-253 3-96 (105)
347 2g4b_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 118.4 10.7 103 172-288 3-120 (172)
348 2dit_A HIV TAT specific factor 99.6 1E-14 3.4E-19 107.4 12.4 84 169-257 11-105 (112)
349 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.8E-20 107.0 7.4 76 79-163 3-78 (88)
350 3ue2_A Poly(U)-binding-splicin 99.6 2.6E-15 8.8E-20 111.0 9.0 81 172-253 19-108 (118)
351 2yh0_A Splicing factor U2AF 65 99.6 6.9E-15 2.4E-19 119.3 12.0 76 172-255 3-89 (198)
352 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4.1E-20 112.8 6.8 64 79-143 6-72 (114)
353 3egn_A RNA-binding protein 40; 99.6 4.9E-16 1.7E-20 119.7 4.6 81 78-163 42-130 (143)
354 3pgw_S U1-70K; protein-RNA com 99.6 4.2E-15 1.4E-19 134.6 10.5 84 78-163 99-182 (437)
355 3beg_B Splicing factor, argini 99.6 3.2E-15 1.1E-19 110.6 8.0 75 79-162 14-93 (115)
356 1jmt_A Splicing factor U2AF 35 99.6 1.3E-15 4.3E-20 110.5 5.2 72 178-251 20-103 (104)
357 2hzc_A Splicing factor U2AF 65 99.6 5.5E-15 1.9E-19 103.6 7.8 72 79-159 4-86 (87)
358 2bz2_A Negative elongation fac 99.6 9.3E-15 3.2E-19 109.0 9.3 77 77-163 35-111 (121)
359 1wf0_A TDP-43, TAR DNA-binding 99.6 7.3E-15 2.5E-19 103.3 7.3 78 79-165 3-80 (88)
360 2pe8_A Splicing factor 45; RRM 99.6 2.4E-14 8.2E-19 103.8 9.8 81 79-161 6-92 (105)
361 2voo_A Lupus LA protein; RNA-b 99.5 4.2E-14 1.4E-18 114.2 9.2 79 80-162 108-186 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.5 8.4E-14 2.9E-18 115.1 9.5 80 78-163 131-229 (240)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.9E-13 1.7E-17 95.7 11.8 67 183-257 27-93 (100)
364 3tht_A Alkylated DNA repair pr 99.5 2.4E-13 8.3E-18 118.3 10.5 116 168-291 13-136 (345)
365 2dit_A HIV TAT specific factor 99.4 9.8E-13 3.4E-17 96.6 11.4 80 78-163 12-102 (112)
366 3s6e_A RNA-binding protein 39; 99.4 4.1E-13 1.4E-17 98.4 9.1 78 171-253 5-92 (114)
367 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.5E-18 99.7 4.0 72 86-160 20-103 (104)
368 3v4m_A Splicing factor U2AF 65 99.4 7.8E-13 2.7E-17 95.8 7.7 80 80-161 4-95 (105)
369 3ue2_A Poly(U)-binding-splicin 99.4 1.5E-12 5.1E-17 96.1 8.2 80 80-161 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.3 1.7E-12 6E-17 112.9 7.7 109 78-195 15-130 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.8E-11 1.6E-15 85.2 13.0 76 80-164 9-91 (100)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 2.4E-11 8.3E-16 83.5 8.5 77 171-257 5-89 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 8.2E-11 2.8E-15 86.3 8.3 76 170-252 15-94 (121)
374 3s6e_A RNA-binding protein 39; 99.2 8.5E-11 2.9E-15 86.1 7.8 76 80-161 6-91 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.2E-10 4E-15 80.4 5.7 74 170-253 12-94 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 2.5E-10 8.5E-15 94.2 8.0 68 185-253 141-212 (222)
377 1owx_A Lupus LA protein, SS-B, 99.0 1.6E-09 5.4E-14 79.4 8.4 71 79-157 16-90 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 2.3E-09 7.8E-14 73.7 6.4 70 82-162 8-85 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 4.2E-08 1.4E-12 69.0 9.5 73 171-250 19-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.8 1.5E-08 5.3E-13 83.4 8.4 67 93-161 141-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.7 1.2E-08 3.9E-13 70.5 4.5 69 82-161 16-93 (95)
382 1wey_A Calcipressin 1; structu 98.3 4.1E-06 1.4E-10 58.8 8.6 75 173-254 5-84 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.2 4.7E-06 1.6E-10 58.7 7.6 72 79-158 19-95 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 0.00012 4.1E-09 51.1 10.4 77 170-255 5-85 (104)
385 1whv_A Poly(A)-specific ribonu 97.9 9.3E-05 3.2E-09 51.0 8.7 57 171-237 14-70 (100)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.00033 1.1E-08 48.9 10.4 89 79-186 6-99 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5E-09 50.0 8.0 68 174-242 2-71 (91)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00019 6.7E-09 49.4 7.1 68 82-149 2-71 (91)
389 1whv_A Poly(A)-specific ribonu 97.6 0.00026 9E-09 48.8 7.6 55 81-144 16-70 (100)
390 1wey_A Calcipressin 1; structu 97.5 0.00048 1.6E-08 48.3 7.6 76 80-163 4-84 (104)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.00052 1.8E-08 49.5 7.9 74 171-253 22-96 (119)
392 3ctr_A Poly(A)-specific ribonu 97.5 0.00016 5.6E-09 49.9 4.9 54 174-237 7-60 (101)
393 3ctr_A Poly(A)-specific ribonu 97.2 0.00034 1.2E-08 48.4 4.3 54 83-144 7-60 (101)
394 2l08_A Regulator of nonsense t 96.8 0.0015 5.2E-08 45.2 4.6 70 80-149 8-79 (97)
395 2l08_A Regulator of nonsense t 96.8 0.0016 5.3E-08 45.2 4.6 69 173-242 9-79 (97)
396 1wwh_A Nucleoporin 35, nucleop 96.7 0.0056 1.9E-07 44.1 7.0 63 79-149 22-84 (119)
397 3p3d_A Nucleoporin 53; structu 96.6 0.0036 1.2E-07 45.8 5.3 78 173-253 7-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.2 0.0026 8.8E-08 57.3 3.3 55 173-234 53-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.9 0.0032 1.1E-07 56.7 2.7 56 80-141 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 92.9 0.099 3.4E-06 38.2 3.8 68 80-149 6-87 (132)
401 3d45_A Poly(A)-specific ribonu 91.6 0.55 1.9E-05 43.0 8.1 56 173-238 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 90.8 0.77 2.6E-05 42.0 8.1 55 81-144 440-494 (507)
403 4eyt_A Telomerase associated p 82.4 8.8 0.0003 25.6 7.9 56 173-237 12-67 (129)
404 2g0c_A ATP-dependent RNA helic 64.6 19 0.00065 23.0 5.7 60 184-252 12-75 (76)
405 2g0c_A ATP-dependent RNA helic 61.6 27 0.00093 22.2 6.0 67 83-160 2-74 (76)
406 1xn9_A 30S ribosomal protein S 59.4 29 0.001 23.8 6.0 49 183-232 28-80 (101)
407 3j21_T 50S ribosomal protein L 56.8 29 0.001 23.1 5.5 58 176-236 25-83 (86)
408 2cu1_A Mitogen-activated prote 56.7 25 0.00086 24.0 5.1 69 177-254 20-88 (103)
409 1ywx_A 30S ribosomal protein S 54.3 30 0.001 23.9 5.3 48 183-231 28-79 (102)
410 2v94_A RPS24, 30S ribosomal pr 51.4 35 0.0012 23.7 5.4 49 183-232 37-89 (107)
411 3u5c_Y RP50, 40S ribosomal pro 48.0 64 0.0022 23.4 6.5 49 183-232 33-85 (135)
412 2npt_B Mitogen-activated prote 40.2 84 0.0029 21.2 6.3 53 177-237 32-84 (100)
413 2jrh_A Mitogen-activated prote 40.0 81 0.0028 21.0 5.4 67 177-252 16-82 (94)
414 3u5e_X 60S ribosomal protein L 39.8 50 0.0017 24.2 4.9 58 176-236 81-139 (142)
415 2c60_A Human mitogen-activated 39.3 73 0.0025 21.8 5.2 63 177-248 43-105 (111)
416 4a17_R RPL23A, 60S ribosomal p 38.8 51 0.0017 24.4 4.8 58 176-236 89-147 (150)
417 2lfv_A Protein DAMX; cell divi 44.8 6.5 0.00022 27.5 0.0 59 174-238 26-86 (106)
418 2xzm_P RPS24E; ribosome, trans 38.4 57 0.002 24.1 5.0 49 183-232 31-83 (149)
419 3fry_A Probable copper-exporti 34.7 79 0.0027 19.3 6.0 54 174-235 7-60 (73)
420 2g1d_A 30S ribosomal protein S 34.3 17 0.00059 24.9 1.6 48 183-231 29-80 (98)
421 3mfb_A Uncharacterized protein 33.3 70 0.0024 23.9 4.9 37 185-222 3-42 (157)
422 3iz5_X 60S ribosomal protein L 31.5 50 0.0017 24.5 3.8 56 177-235 92-148 (152)
423 4e8u_A Putative uncharacterize 28.1 1.3E+02 0.0045 22.8 5.7 40 93-135 33-74 (172)
424 1vq8_S 50S ribosomal protein L 27.8 88 0.003 20.7 4.2 56 176-234 24-80 (85)
425 2i9x_A Putative septation prot 25.8 95 0.0032 20.6 4.0 48 200-254 5-54 (87)
426 2zkr_s 60S ribosomal protein L 25.5 1.2E+02 0.0041 22.6 4.9 57 176-235 95-152 (156)
427 3lpe_A Putative transcription 24.5 60 0.0021 21.7 3.0 22 122-143 49-70 (92)
428 4a4j_A Pacszia, cation-transpo 22.8 1.3E+02 0.0043 17.8 4.9 55 174-235 4-61 (69)
429 2ia9_A Putative septation prot 22.0 1.2E+02 0.004 20.7 4.0 47 200-253 5-53 (100)
430 1x66_A Friend leukemia integra 21.5 63 0.0021 22.0 2.6 30 74-103 8-37 (98)
431 4eyt_A Telomerase associated p 21.2 1.9E+02 0.0064 19.2 7.9 57 79-143 10-66 (129)
432 2i9z_A Putative septation prot 20.8 1.3E+02 0.0045 20.7 4.1 48 200-254 5-54 (105)
433 3ts2_A Protein LIN-28 homolog 20.6 12 0.0004 27.9 -1.4 28 188-224 2-29 (148)
434 2cs4_A Protein C12ORF2; GTP bi 20.3 59 0.002 22.0 2.2 26 79-104 7-39 (95)
435 2gu3_A YPMB protein; APC1927, 20.1 2E+02 0.0068 20.7 5.3 48 178-225 68-127 (136)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.6e-38 Score=259.06 Aligned_cols=170 Identities=28% Similarity=0.503 Sum_probs=153.9
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++|+++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|.+|++.+++..+ .++.+++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999998 678899988
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
+..... .......+|||+||+.++++++|+++|+ .||.|.+++|+.|. +.++|||||+|.+.++|.+|++.|||.
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 864422 1223457899999999999999999999 99999999999984 457999999999999999999999999
Q ss_pred eecceeeEEccCCCCCC
Q 021958 240 FCSTRPMRIGPATNKKT 256 (305)
Q Consensus 240 ~~~g~~l~v~~~~~~~~ 256 (305)
.|+|+.|+|.|++++..
T Consensus 167 ~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EETTEECEEEECCCHHH
T ss_pred EECCEEEEEEEcCCCcc
Confidence 99999999999987643
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.1e-36 Score=248.81 Aligned_cols=180 Identities=19% Similarity=0.380 Sum_probs=153.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
.+....++|||+|||.++|+++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++. ++..+ .++.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEe
Confidence 3456789999999999999999999999999999999999998999999999999999999999966 88888 67889
Q ss_pred eeeccCCCCCCC--CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 021958 156 RLNWASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 156 ~v~~~~~~~~~~--~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (305)
++.++....... ......++|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|+
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 998887543222 2234568999999999999999999999 9999999999999889999999999999999999999
Q ss_pred HHhCCceecceeeEEccCCCCCCCCCC
Q 021958 234 TEMNGVFCSTRPMRIGPATNKKTVSGQ 260 (305)
Q Consensus 234 ~~l~~~~~~g~~l~v~~~~~~~~~~~~ 260 (305)
.. ++..|+|+.|+|.|+.++......
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HC-SCCEETTEECEEEECC--------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhccc
Confidence 87 899999999999999988777543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=240.13 Aligned_cols=166 Identities=31% Similarity=0.570 Sum_probs=153.9
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccC
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (305)
++|||+|||.++|+++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++.++|..+ .++.+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 689999999999999999999999999999999997 478999999999999999999999999999 67999999987
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021958 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 241 (305)
.... .......+|||+|||.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 78 ~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 78 QSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCC--CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 5533 3445678999999999999999999999 999999999999988999999999999999999999999999999
Q ss_pred cceeeEEccCCC
Q 021958 242 STRPMRIGPATN 253 (305)
Q Consensus 242 ~g~~l~v~~~~~ 253 (305)
+|+.|+|+|++.
T Consensus 155 ~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 NGRPLRINWAAK 166 (166)
T ss_dssp TTEECEEEESCC
T ss_pred CCcEEEEEecCC
Confidence 999999999863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.4e-36 Score=239.73 Aligned_cols=165 Identities=26% Similarity=0.502 Sum_probs=154.8
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.++|..+ .++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 458999999999999999999999999999999999988999999999999999999999999999999 679999999
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
+... ......++|||+|||.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|||.
T Consensus 80 ~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 80 ARPG----GESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CCCC----SSTTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCC----cccCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 8754 3345678999999999999999999999 9999999999999889999999999999999999999999999
Q ss_pred eecc--eeeEEccC
Q 021958 240 FCST--RPMRIGPA 251 (305)
Q Consensus 240 ~~~g--~~l~v~~~ 251 (305)
.++| +.|+|+||
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9977 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.7e-36 Score=238.06 Aligned_cols=164 Identities=27% Similarity=0.490 Sum_probs=153.0
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
.++|||+|||.++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 57999999999999999999999999999999999988999999999999999999999999999999 6799999988
Q ss_pred CCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 161 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
... .......+|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|||..
T Consensus 80 ~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 80 RPS----SASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCC----CGGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCC----cccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 754 2334568999999999999999999999 99999999999998899999999999999999999999999999
Q ss_pred eccee--eEEccC
Q 021958 241 CSTRP--MRIGPA 251 (305)
Q Consensus 241 ~~g~~--l~v~~~ 251 (305)
++|+. |+|+||
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99975 888885
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.6e-36 Score=248.24 Aligned_cols=176 Identities=21% Similarity=0.394 Sum_probs=157.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++|+++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4568999999999999999999999999999999999988899999999999999999999999999998 67889998
Q ss_pred ccCCCCCCC-------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021958 159 WASFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 159 ~~~~~~~~~-------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
++....... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 876542111 1224568999999999999999999999 99999999999998899999999999999999999
Q ss_pred HHHHhCCceecceeeEEccCCCCCCC
Q 021958 232 AMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 232 a~~~l~~~~~~g~~l~v~~~~~~~~~ 257 (305)
|++.|||..|+|+.|+|.|+..+...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999887554
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.8e-35 Score=234.07 Aligned_cols=168 Identities=18% Similarity=0.339 Sum_probs=151.2
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCC--CccceEEEEEcCHHHHHHHHHHhCCCCCC-CCCccee
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQNFR 156 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~-~~~~~i~ 156 (305)
+.++|||+|||.++|+++|+++|++||.|.++++++++.++ +++|||||+|.+.++|.+|++.++|..+. +.++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999998764 3477788
Q ss_pred eeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
+.++.... ......++|||+|||.++++++|+++|+ .||.|.++++..+. +|.++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 82 MKPADSEK---NNAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEECGGGC---CSCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred Eccccccc---cccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh
Confidence 88776442 2334578999999999999999999999 99999999999996 6899999999999999999999999
Q ss_pred CCceec---ceeeEEccCC
Q 021958 237 NGVFCS---TRPMRIGPAT 252 (305)
Q Consensus 237 ~~~~~~---g~~l~v~~~~ 252 (305)
||..+. |+.|+|+|+.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 998875 4999999974
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.3e-36 Score=239.65 Aligned_cols=165 Identities=24% Similarity=0.429 Sum_probs=149.7
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
+.++|||+|||.++|+++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++. +..+ .|+.+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 568999999999999999999999999999999999988999999999999999999999974 4555 567777777
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
+... ......++|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++ +++.
T Consensus 78 ~~~~----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 78 AIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp CCCH----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred ccch----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 6532 2223467999999999999999999999 99999999999998899999999999999999999998 8999
Q ss_pred eecceeeEEccCCCC
Q 021958 240 FCSTRPMRIGPATNK 254 (305)
Q Consensus 240 ~~~g~~l~v~~~~~~ 254 (305)
.++|+.|+|.|++++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999999876
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.6e-33 Score=223.93 Aligned_cols=159 Identities=23% Similarity=0.420 Sum_probs=144.1
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhc----C-------CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 148 (305)
+.++|||+|||.++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 66666654 44789999999999999999 8999999
Q ss_pred CCCCcceeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHH
Q 021958 149 PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (305)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~ 228 (305)
.++.+++.++... ......++|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++
T Consensus 76 --~g~~i~v~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 76 --QGQSLKIRRPHDY----QPLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp --TTEECEEECCSSC----CCCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred --cCceeeecCCccc----CCCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 6799999987643 2334578999999999999999999999 99999999999998899999999999999999
Q ss_pred HHHHHHHhCCceecceeeEEccCC
Q 021958 229 QLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 229 A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
|.+|++.|||..++|+.|+|+|+.
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999974
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.5e-34 Score=229.77 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=146.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|+ .|+|..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4467899999999999999999999999998766 34444457889999999999999999999 5999999 689999
Q ss_pred eeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
+.++..... ......++|||+|||.++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.|
T Consensus 85 v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 85 LEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 999875432 3344678999999999999999999999 99988765 357899999999999999999999999
Q ss_pred CCceecceeeEEccCCCC
Q 021958 237 NGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 237 ~~~~~~g~~l~v~~~~~~ 254 (305)
||..|+|+.|+|+|++++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999999875
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4.4e-33 Score=227.67 Aligned_cols=167 Identities=22% Similarity=0.383 Sum_probs=146.9
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhc----C-------CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 148 (305)
..++|||+|||.++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 456789999999999999999 8999999
Q ss_pred CCCCcceeeeccCCCCCCC----------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCC
Q 021958 149 PNGEQNFRLNWASFGAGEK----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212 (305)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~ 212 (305)
.++.+++.++....... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+
T Consensus 76 --~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 --QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSAT 152 (198)
T ss_dssp --TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTT
T ss_pred --cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCC
Confidence 67999999886542111 1225678999999999999999999999 9999999999999889
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCC
Q 021958 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (305)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 256 (305)
|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999988654
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.8e-33 Score=238.61 Aligned_cols=173 Identities=16% Similarity=0.278 Sum_probs=159.2
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.++|..+ .++.+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999988999999999999999999999999999999 679999999
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCC-CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021958 160 ASFGAGEKRDDTPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
+...... ......++|||+|||.++ ++++|+++|+ .||.|.+++|..+. +|.++|||||+|.+.++|.+|++.|||
T Consensus 172 a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 9765332 334567899999999996 9999999999 99999999999986 899999999999999999999999999
Q ss_pred ceecceeeEEccCCCCCCC
Q 021958 239 VFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 239 ~~~~g~~l~v~~~~~~~~~ 257 (305)
..++|+.|+|.|++++...
T Consensus 249 ~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 249 LSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CEETTEECEEEECCSSSCH
T ss_pred CccCCeEEEEEEecCCCcc
Confidence 9999999999999887653
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.1e-32 Score=237.68 Aligned_cols=165 Identities=22% Similarity=0.444 Sum_probs=145.9
Q ss_pred CCCCCceEEEcCCCcccCHHHHh----HhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
+....++|||+||+.++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 34568999999999999999976 8999999999998876 578999999999999999999999999999 67
Q ss_pred cceeeeccCCCCCC------------------------------------------------------------------
Q 021958 153 QNFRLNWASFGAGE------------------------------------------------------------------ 166 (305)
Q Consensus 153 ~~i~v~~~~~~~~~------------------------------------------------------------------ 166 (305)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 89999888654310
Q ss_pred -----------------------------------------CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEE
Q 021958 167 -----------------------------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (305)
Q Consensus 167 -----------------------------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~ 205 (305)
......+++|||+||+.++++++|+++|+ .||.|.+|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 01223568899999999999999999999 999999999
Q ss_pred EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ceeeEEccCC
Q 021958 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (305)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~ 252 (305)
+..+. +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98664 689999999999999999999999999 9999999986
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-32 Score=237.37 Aligned_cols=171 Identities=18% Similarity=0.295 Sum_probs=151.9
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.++|..+ .++.+++.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~ 91 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQL 91 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEe
Confidence 458999999999999999999999999 888887 45678999999999999999999999999 678999988
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
+. ...+|||+|||.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|++.|+|.
T Consensus 92 ~~----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 92 QP----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp CC----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cC----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 64 347999999999999999999999 9999999999999889999999999999999999999999999
Q ss_pred eecceeeEEccCCCCCCCCCCCCCCCcceEEeCC
Q 021958 240 FCSTRPMRIGPATNKKTVSGQQQYPKGTFLVVGT 273 (305)
Q Consensus 240 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (305)
.++|+.|+|.|+..+..... ......+++++
T Consensus 161 ~~~g~~i~v~~a~~~~~~~~---~~~~~~l~v~n 191 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLTPA---LLHSRCLCVDR 191 (284)
T ss_dssp EETTEECEEEECCGGGCCTT---TTSCSEEEEEC
T ss_pred EeCCcEEEEEECCCCCCCcc---cCCccEEEEec
Confidence 99999999999987654422 23334455554
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.8e-32 Score=229.21 Aligned_cols=163 Identities=16% Similarity=0.260 Sum_probs=144.2
Q ss_pred CCCceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 4678999999999 99999999999999999999998875 68999999999999999999999999 6789999
Q ss_pred eccCCCCCCC-------------------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCC-CeeEEE
Q 021958 158 NWASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAK 205 (305)
Q Consensus 158 ~~~~~~~~~~-------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~i~ 205 (305)
.++....... ....++++|||+||+.++++++|+++|+ .|| .|.+++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEEE
Confidence 8887541110 0123468999999999999999999999 999 999999
Q ss_pred EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ceeeEEccCCCC
Q 021958 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (305)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~~~ 254 (305)
++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9653 2789999999999999999999999999 999999999864
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=8.3e-33 Score=226.78 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=138.2
Q ss_pred CCceEEEcCCC-cccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 80 EIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 80 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
+.++|||+||+ .++|+++|+++|+.||.|.+++++++ .+|||||+|.+.++|.+|++.|||..+ .++.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 46799999999 89999999999999999999999865 368999999999999999999999999 67889999
Q ss_pred ccCCCCCCC---------------------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCe--eE
Q 021958 159 WASFGAGEK---------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST--KG 203 (305)
Q Consensus 159 ~~~~~~~~~---------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i--~~ 203 (305)
++....... ....++++|||+|||.++++++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 886432100 0013467899999999999999999999 99999 88
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce----eeEEcc
Q 021958 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR----PMRIGP 250 (305)
Q Consensus 204 i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~----~l~v~~ 250 (305)
+++..+. +.++|||||+|.+.++|.+|+..|||..|+|+ .+.|+|
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 9988774 55679999999999999999999999999887 355554
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.3e-32 Score=238.49 Aligned_cols=180 Identities=12% Similarity=0.216 Sum_probs=145.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++|+++|+++|+.||.|.++++.+++. .++|||||+|.+.++|.+|+ .++|..+ .++.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAI-TKTHKVV--GQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHH-TTTTCEE--TTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHH-HhCCcEe--CCcEE
Confidence 3456789999999999999999999999999999999999863 25799999999999999999 5899999 67899
Q ss_pred eeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021958 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 156 ~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
.+.++. .++|||+|||.++++++|+++|+ .|| .|.++++..+. .|.++|||||+|.+.++|.+|++
T Consensus 111 ~v~~~~-----------~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 111 IVSHLT-----------ECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEECC-----------SCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEECC-----------CCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHH
Confidence 998874 68999999999999999999999 999 99999999886 48889999999999999999999
Q ss_pred HhCCceecceeeEEccCCCCCCCCCC-CCCCCcceEEeCC
Q 021958 235 EMNGVFCSTRPMRIGPATNKKTVSGQ-QQYPKGTFLVVGT 273 (305)
Q Consensus 235 ~l~~~~~~g~~l~v~~~~~~~~~~~~-~~~~~~~~~~~g~ 273 (305)
.|+|..++|+.|+|.|+.++...... ........+++++
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~n 217 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRN 217 (292)
T ss_dssp HHTTCEETTEECEEEECCCC---------CCTTTEEEEEE
T ss_pred HhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEEC
Confidence 99999999999999999876655332 2333445555554
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.1e-32 Score=236.12 Aligned_cols=170 Identities=14% Similarity=0.270 Sum_probs=146.4
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcC-CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
..++|||+|||.++++++|+++|+.|| .|.++++..++. +.++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999875 88999999999999999999999999999 67999999
Q ss_pred ccCCCCCCC---CCCCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCC-CCCcccEEEEEeCCHHHHHHHH
Q 021958 159 WASFGAGEK---RDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAM 233 (305)
Q Consensus 159 ~~~~~~~~~---~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~-~~~~~g~afV~f~~~~~A~~a~ 233 (305)
++....... ......++|||+|||.+ +++++|+++|+ .||.|.+|++..+.. +|.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 987653322 23456789999999999 99999999999 999999999998865 5899999999999999999999
Q ss_pred HHhCCceecceeeEEccCCCC
Q 021958 234 TEMNGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 234 ~~l~~~~~~g~~l~v~~~~~~ 254 (305)
.|||..|+|+.|+|.|++++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.6e-32 Score=222.44 Aligned_cols=161 Identities=16% Similarity=0.263 Sum_probs=142.6
Q ss_pred CceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 81 IRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 81 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
.++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+ .++.+++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEE
Confidence 57999999999 99999999999999999999998764 68999999999999999999999999 678899988
Q ss_pred cCCCCCCC-------------------------------CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCC-CeeEEEEE
Q 021958 160 ASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVV 207 (305)
Q Consensus 160 ~~~~~~~~-------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~i~i~ 207 (305)
+....... ....++++|||+||+.++++++|+++|+ .|| .|.++++.
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i~ 154 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKFF 154 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEES
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEEE
Confidence 86441110 0123478999999999999999999999 999 99999997
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ceeeEEccCCCC
Q 021958 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (305)
Q Consensus 208 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~~~ 254 (305)
.+. +|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 155 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp STT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 643 789999999999999999999999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=6.1e-31 Score=224.23 Aligned_cols=161 Identities=27% Similarity=0.453 Sum_probs=145.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+..++|..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 3456789999999999999999999999999999998643 68999999999999999999999999 679999
Q ss_pred eeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
+.++.. ..+|||+||+.++++++|+++|+ .||.|.+|.++.| .+|.++|||||+|.+.++|.+|+..|
T Consensus 90 v~~a~~----------~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 90 IRFATH----------GAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEECCC----------SSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eeeccc----------CCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 999863 57999999999999999999999 9999999999999 58999999999999999999999999
Q ss_pred C-Cceec---ceeeEEccCCCCCCC
Q 021958 237 N-GVFCS---TRPMRIGPATNKKTV 257 (305)
Q Consensus 237 ~-~~~~~---g~~l~v~~~~~~~~~ 257 (305)
| +..+. ++.|.|.++......
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 44444 999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=2e-25 Score=175.70 Aligned_cols=145 Identities=22% Similarity=0.312 Sum_probs=115.8
Q ss_pred EEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC-----CcceeeeccCC--CCCCCCCCCCCceEEEcCCC
Q 021958 110 AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-----EQNFRLNWASF--GAGEKRDDTPDHTIFVGDLA 182 (305)
Q Consensus 110 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~-----~~~i~v~~~~~--~~~~~~~~~~~~~l~v~nlp 182 (305)
+++++.+. .+++|||||+|.+.++|++|++.+++.....+ +.......... ............+|||+||+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777775 47899999999999999999988765433211 11111111111 11122334557899999999
Q ss_pred cCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021958 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 257 (305)
.++++++|+++|+ .||.|.+|++..|..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++...
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999 9999999999999889999999999999999999999999999999999999999887554
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.2e-23 Score=164.00 Aligned_cols=128 Identities=20% Similarity=0.321 Sum_probs=112.5
Q ss_pred CCCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCcceeeeccCCCC------------CCCCCCCCCceEEEcCCCcCC
Q 021958 119 TGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNFRLNWASFGA------------GEKRDDTPDHTIFVGDLAADV 185 (305)
Q Consensus 119 ~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~~i~v~~~~~~~------------~~~~~~~~~~~l~v~nlp~~~ 185 (305)
....+|+++|+|.+.++|++|++.+ +|..++ | .++++++.... .........++|||+||+.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~--G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVD--G-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC--C-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCC--C-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 3577899999999999999999999 999994 4 88888876521 223444667999999999999
Q ss_pred CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCC
Q 021958 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (305)
Q Consensus 186 ~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 255 (305)
++++|+++|+ .||.|.+|++..+ ++|||||+|.+.++|.+|+..|||..|+|+.|+|.|++++.
T Consensus 86 t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 86 NKTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CHHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999 9999999999876 48999999999999999999999999999999999998764
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=145.19 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=78.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
.+++|||+|||.++|+++|+++|+ .||.|.++++..|..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 021958 252 TN 253 (305)
Q Consensus 252 ~~ 253 (305)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=2.1e-22 Score=149.60 Aligned_cols=106 Identities=18% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
...+|||+|||.++|+++|+++|++||.|.++++++++ +.++|||||+|.+.++|.+|++.|+|..+ .++.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 35689999999999999999999999999999999985 56899999999999999999999999999 679999999
Q ss_pred cCCCCCCC----CCCCCCceEEEcCCCcCCCHHH
Q 021958 160 ASFGAGEK----RDDTPDHTIFVGDLAADVTDYM 189 (305)
Q Consensus 160 ~~~~~~~~----~~~~~~~~l~v~nlp~~~~~~~ 189 (305)
+..+.... .......+|||+||+.++|++-
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 87653322 2223456799999999999863
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.86 E-value=5.3e-22 Score=151.55 Aligned_cols=126 Identities=18% Similarity=0.267 Sum_probs=84.8
Q ss_pred eEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEE
Q 021958 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (305)
Q Consensus 125 ~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i 204 (305)
++|+++.+...+..|+..++|....+.+ ...+.. ........++|||+|||.++++++|+++|+ .||.|.+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v 77 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGDV 77 (135)
T ss_dssp --------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCSEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEE
Confidence 6788889999999999888877653322 122222 123445678999999999999999999999 99999999
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCCC
Q 021958 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (305)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 258 (305)
++..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++.+....
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999998899999999999999999999999999999999999999998866553
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=140.90 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
.+.++|||+||+.++++++|+++|+ +||.|.+|+|+.|..+++++|||||+|++.++|.+|++.|||..++|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021958 251 ATNKK 255 (305)
Q Consensus 251 ~~~~~ 255 (305)
+..+.
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 87543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=140.55 Aligned_cols=84 Identities=12% Similarity=0.271 Sum_probs=77.7
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceecceeeEEcc
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGP 250 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~ 250 (305)
+++|||+|||.++|+++|+++|+ .|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.+ ++..++|+.|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 47899999999999999999999 999 8999999999999999999999999999999999987 45679999999999
Q ss_pred CCCCCCC
Q 021958 251 ATNKKTV 257 (305)
Q Consensus 251 ~~~~~~~ 257 (305)
++++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9886554
No 28
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=4.8e-21 Score=151.58 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=80.8
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccCCCC----------------CCCCCCCCCceEEEcCCCcCCCHHHHH
Q 021958 128 IEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA----------------GEKRDDTPDHTIFVGDLAADVTDYMLQ 191 (305)
Q Consensus 128 V~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~----------------~~~~~~~~~~~l~v~nlp~~~~~~~l~ 191 (305)
.+|++.++|..++..+++......++.+...+..... .........++|||+||+.++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999998887775455555555432211 011223456789999999999999999
Q ss_pred HHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCCC
Q 021958 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (305)
Q Consensus 192 ~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 258 (305)
++|+ .||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+..+....
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9999 99999999999998899999999999999999999999999999999999999998776554
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=138.50 Aligned_cols=80 Identities=14% Similarity=0.303 Sum_probs=75.2
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCC--eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eecceee
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FCSTRPM 246 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~--i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~~l 246 (305)
=.+|||+||++++|+++|+++|+ .||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|||. .|+||.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 47899999999999999999999 9995 678999999999999999999999999999999999996 5899999
Q ss_pred EEccCCC
Q 021958 247 RIGPATN 253 (305)
Q Consensus 247 ~v~~~~~ 253 (305)
+|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.6e-20 Score=131.03 Aligned_cols=82 Identities=37% Similarity=0.635 Sum_probs=78.5
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
+.+|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 36899999999999999999999 99999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 021958 253 NKK 255 (305)
Q Consensus 253 ~~~ 255 (305)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=5.3e-20 Score=136.69 Aligned_cols=92 Identities=33% Similarity=0.545 Sum_probs=85.3
Q ss_pred CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 167 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
.......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556789999999999999999999999 99999999999998899999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCC
Q 021958 247 RIGPATNKKTVSG 259 (305)
Q Consensus 247 ~v~~~~~~~~~~~ 259 (305)
+|.|++.+.....
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999998766543
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=132.33 Aligned_cols=83 Identities=34% Similarity=0.564 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3468999999999999999999999 999999999999988999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021958 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8865
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.9e-20 Score=134.41 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=80.5
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
++++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 468999999999999999999999 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
+++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 887543
No 34
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=135.53 Aligned_cols=81 Identities=30% Similarity=0.531 Sum_probs=76.6
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++|+++|+++|++||.|.++++.+|+.+|+++|||||+|.+.++|.+|++.|+|..+ .|+.|+|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999999 679999999
Q ss_pred cCC
Q 021958 160 ASF 162 (305)
Q Consensus 160 ~~~ 162 (305)
++.
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 863
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=132.56 Aligned_cols=87 Identities=32% Similarity=0.580 Sum_probs=82.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4578999999999999999999999 999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 021958 251 ATNKKTVS 258 (305)
Q Consensus 251 ~~~~~~~~ 258 (305)
++.+....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98877654
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.7e-20 Score=139.23 Aligned_cols=82 Identities=30% Similarity=0.549 Sum_probs=75.9
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
..+|||+|||.++++++|+++|+ .||.|.+|+|+.|. +.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56899999999999999999999 99999999999985 4579999999999999999999999999999999999998
Q ss_pred CCCCC
Q 021958 253 NKKTV 257 (305)
Q Consensus 253 ~~~~~ 257 (305)
.+...
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76554
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=133.73 Aligned_cols=88 Identities=27% Similarity=0.409 Sum_probs=82.8
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||.++++++|+++|+ .||.|.+|++..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999 99999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 021958 250 PATNKKTVS 258 (305)
Q Consensus 250 ~~~~~~~~~ 258 (305)
+++.+....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999877653
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=135.05 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4456689999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|++.+...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999887655
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=131.84 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=81.0
Q ss_pred CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 167 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
+....+.++|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556789999999999999999999999 99999999999998889999999999999999999999999999999999
Q ss_pred EEccCCC
Q 021958 247 RIGPATN 253 (305)
Q Consensus 247 ~v~~~~~ 253 (305)
+|.|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999875
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=132.57 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=82.2
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|+++.+..++.++|||||+|.+.++|.+|++ |++..|+|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 445679999999999999999999999 99999999999998899999999999999999999998 9999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
.|++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876654
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.1e-20 Score=137.28 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=83.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998876553
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=131.99 Aligned_cols=88 Identities=20% Similarity=0.406 Sum_probs=81.6
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.++++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999 99999999999997 899999999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|++++...
T Consensus 90 v~~a~~~~~~ 99 (100)
T 2do4_A 90 VAISNSGPSS 99 (100)
T ss_dssp EEECCCCSCC
T ss_pred EEECCCCCCC
Confidence 9999887543
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=8.1e-21 Score=134.68 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=72.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
.+|||+||+.++++++|+++|+ .|| .|.+++++.|..+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021958 252 TNKKT 256 (305)
Q Consensus 252 ~~~~~ 256 (305)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87644
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=133.96 Aligned_cols=89 Identities=28% Similarity=0.469 Sum_probs=83.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|++.+...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999887655
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3e-20 Score=130.29 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999 99999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 021958 250 PAT 252 (305)
Q Consensus 250 ~~~ 252 (305)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 975
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.5e-20 Score=134.03 Aligned_cols=89 Identities=24% Similarity=0.386 Sum_probs=83.2
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.|.+|+++.+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345679999999999999999999999 9999999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
.|++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998876654
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=133.14 Aligned_cols=87 Identities=28% Similarity=0.519 Sum_probs=81.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA-KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i-~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
...++|||+|||.++++++|+++|+ .||.|.++ ++..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999 99999999 999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 021958 250 PATNKKTVS 258 (305)
Q Consensus 250 ~~~~~~~~~ 258 (305)
|++++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998876553
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=134.32 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=83.4
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445679999999999999999999999 999999999999988899999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99998766553
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=130.94 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=79.2
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3445678999999999999999999999 999999999999988899999999999999999999999999999999999
Q ss_pred EccCC
Q 021958 248 IGPAT 252 (305)
Q Consensus 248 v~~~~ 252 (305)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=135.00 Aligned_cols=87 Identities=30% Similarity=0.624 Sum_probs=81.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 021958 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=133.52 Aligned_cols=90 Identities=21% Similarity=0.379 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC------Ccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN------GVFC 241 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------~~~~ 241 (305)
......++|||+|||.++++++|+++|+ .||.|.+|+|..+..++.++|||||+|.+.++|.+|++.|| +..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3445678999999999999999999999 99999999999998899999999999999999999999999 9999
Q ss_pred cceeeEEccCCCCCCCC
Q 021958 242 STRPMRIGPATNKKTVS 258 (305)
Q Consensus 242 ~g~~l~v~~~~~~~~~~ 258 (305)
+|+.|+|.|++++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999999876553
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=131.80 Aligned_cols=87 Identities=14% Similarity=0.301 Sum_probs=80.5
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
.+.++|||+||+.++++++|+++|+ .||.|.+|++..+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4578999999999999999999999 999999999998875 568899999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99998876653
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=135.36 Aligned_cols=86 Identities=21% Similarity=0.437 Sum_probs=80.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.+|.+..+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4578999999999999999999999 99999999999997 899999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 021958 251 ATNKKTVS 258 (305)
Q Consensus 251 ~~~~~~~~ 258 (305)
++.+....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98876553
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=132.03 Aligned_cols=86 Identities=23% Similarity=0.412 Sum_probs=81.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCee-EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee---
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTK-GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP--- 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~-~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~--- 245 (305)
....++|||+|||.++++++|+++|+ .||.|. +++++.++.++.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 45679999999999999999999999 999999 9999999889999999999999999999999999999999999
Q ss_pred -eEEccCCCCCC
Q 021958 246 -MRIGPATNKKT 256 (305)
Q Consensus 246 -l~v~~~~~~~~ 256 (305)
|+|.|++....
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987654
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=132.68 Aligned_cols=90 Identities=48% Similarity=0.787 Sum_probs=83.0
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhc-CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRAR-YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~ 245 (305)
......++|||+||+.++++++|+++|+ . ||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+.. |+|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 3445679999999999999999999999 8 9999999999998 99999999999999999999999999999 99999
Q ss_pred eEEccCCCCCCCCC
Q 021958 246 MRIGPATNKKTVSG 259 (305)
Q Consensus 246 l~v~~~~~~~~~~~ 259 (305)
|+|.|++.+.....
T Consensus 82 l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 82 VRLSVAIPKASRVK 95 (104)
T ss_dssp CCCCBCCCCCSCCC
T ss_pred EEEEEccCCCcCCC
Confidence 99999988766543
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=133.26 Aligned_cols=89 Identities=30% Similarity=0.501 Sum_probs=82.9
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999 9999999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
.|++.+....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998876553
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=132.07 Aligned_cols=88 Identities=31% Similarity=0.542 Sum_probs=82.1
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|++..+ ++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455789999999999999999999999 9999999999998 889999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999877654
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=7.1e-20 Score=138.51 Aligned_cols=87 Identities=24% Similarity=0.396 Sum_probs=82.1
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
....+.++|||+||+.++++++|+++|+ .||.|.+|++..+..++.++|||||+|.+.++|.+|++.|+|..|+|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456789999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 021958 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|.|++.+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998765
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=2.1e-19 Score=131.16 Aligned_cols=88 Identities=20% Similarity=0.336 Sum_probs=81.6
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc---e
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST---R 244 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~ 244 (305)
......++|||+||+.++++++|+++|+ .||.|.+|+|..+. ++.++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3345689999999999999999999999 99999999999997 79999999999999999999999999999988 9
Q ss_pred eeEEccCCCCCCC
Q 021958 245 PMRIGPATNKKTV 257 (305)
Q Consensus 245 ~l~v~~~~~~~~~ 257 (305)
.|+|.|++.+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999887655
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=132.06 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=83.4
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID-RLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~ 245 (305)
......++|||+|||.++++++|+++|+ .||.|.+|++..+ ..++.++|||||+|.+.++|.+|++.| |+..|+|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4456689999999999999999999999 9999999999998 788999999999999999999999999 999999999
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|.|++.+....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998876553
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=133.73 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.+|.+..+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34568999999999999999999999 99999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021958 250 PATNKK 255 (305)
Q Consensus 250 ~~~~~~ 255 (305)
|++.+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 62
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=131.59 Aligned_cols=84 Identities=29% Similarity=0.381 Sum_probs=79.2
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
......++|||+||+.++++++|+++|+ .||.|.+ +++..+..+|.++|||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445679999999999999999999999 9999999 999999889999999999999999999999999999
Q ss_pred eecceeeEEccCC
Q 021958 240 FCSTRPMRIGPAT 252 (305)
Q Consensus 240 ~~~g~~l~v~~~~ 252 (305)
.++|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=133.79 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCee--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--------GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~--------~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 239 (305)
.+....++|||+||+.++++++|+++|+ .||.|. .|+|..+..++.++|||||+|.+.++|.+|++.|||.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 4456789999999999999999999999 999999 6999999889999999999999999999999999999
Q ss_pred eecceeeEEccCCCCCCCC
Q 021958 240 FCSTRPMRIGPATNKKTVS 258 (305)
Q Consensus 240 ~~~g~~l~v~~~~~~~~~~ 258 (305)
.|+|+.|+|.|++.+....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999999876653
No 64
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=139.26 Aligned_cols=90 Identities=24% Similarity=0.453 Sum_probs=83.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445678999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999876653
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.4e-20 Score=136.10 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCc------CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc-
Q 021958 171 TPDHTIFVGDLAA------DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST- 243 (305)
Q Consensus 171 ~~~~~l~v~nlp~------~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g- 243 (305)
..+++|||+|||. ++++++|+++|+ .||.|.+|+|+.+..+|+++|||||+|.+.++|.+|++.|||..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3468999999999 999999999999 99999999999999899999999999999999999999999999999
Q ss_pred eeeEEccCCCCC
Q 021958 244 RPMRIGPATNKK 255 (305)
Q Consensus 244 ~~l~v~~~~~~~ 255 (305)
+.|+|.+++++.
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999987653
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=130.05 Aligned_cols=88 Identities=22% Similarity=0.407 Sum_probs=81.1
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .|| |.+|+++.+..++.++|||||+|.+.++|.+|+ .||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 3445679999999999999999999999 997 999999999989999999999999999999999 8999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99998876553
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=133.76 Aligned_cols=89 Identities=31% Similarity=0.453 Sum_probs=82.2
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..+++++|||||+|.+.++|.+|++.+++ .|+|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 4456679999999999999999999999 999999999999988999999999999999999999999998 89999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99998765553
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2.6e-19 Score=134.73 Aligned_cols=88 Identities=30% Similarity=0.425 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3446678999999999999999999999 99999999999998 899999999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|+......
T Consensus 108 V~~a~~~~~~ 117 (124)
T 2kt5_A 108 IQLVASQIDL 117 (124)
T ss_dssp EEEECCTTCC
T ss_pred EEEeCCCCCC
Confidence 9999876544
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1e-19 Score=134.04 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=81.1
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35578999999999999999999999 99999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021958 250 PATNKKT 256 (305)
Q Consensus 250 ~~~~~~~ 256 (305)
|++.+..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=130.76 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecceeeE
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPMR 247 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~l~ 247 (305)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.+ +|||||+|++.++|.+|++.|+ +..|+|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 35678999999999999999999999 9999999999865 7999999999999999999886 4789999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998876654
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.2e-19 Score=132.62 Aligned_cols=89 Identities=21% Similarity=0.432 Sum_probs=82.7
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---cce
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STR 244 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~ 244 (305)
......++|||+||+.++++++|+++|+ .||.|.+|+++.+..++.++|||||+|.+.++|.+|++.||+..+ +|+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3455679999999999999999999999 999999999999988999999999999999999999999999997 899
Q ss_pred eeEEccCCCCCCC
Q 021958 245 PMRIGPATNKKTV 257 (305)
Q Consensus 245 ~l~v~~~~~~~~~ 257 (305)
.|+|.|++.+...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999887654
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=130.96 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=81.0
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
....+.++|||+||+.++++++|+++|+ .|| |.+|+|+.+..+ +.++|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 3445679999999999999999999999 999 999999999877 999999999999999999999 999999999999
Q ss_pred EEccCCCCCCCC
Q 021958 247 RIGPATNKKTVS 258 (305)
Q Consensus 247 ~v~~~~~~~~~~ 258 (305)
+|.+++.+....
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998876553
No 73
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.7e-20 Score=136.44 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=78.7
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ +||.|.+|++..+..+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccCC
Q 021958 248 IGPAT 252 (305)
Q Consensus 248 v~~~~ 252 (305)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99975
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=130.87 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=82.9
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.+|.|+.+..++.++|||||+|.+.++|.+|++. ++..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 4456679999999999999999999999 999999999999988999999999999999999999998 99999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.+++++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99999876653
No 75
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1e-18 Score=134.21 Aligned_cols=87 Identities=26% Similarity=0.499 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 678999
Q ss_pred eeccCCCCC
Q 021958 157 LNWASFGAG 165 (305)
Q Consensus 157 v~~~~~~~~ 165 (305)
|.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986533
No 76
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=141.88 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=77.6
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
..++|||+||++++++++|+++|+ .|| .|.+|+|+.|..+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 458999999999999999999999 999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021958 250 PATNK 254 (305)
Q Consensus 250 ~~~~~ 254 (305)
+++.+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98764
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=128.95 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~ 245 (305)
....++++|||+|||.++++++|+++|+ .||.|.+++++++ ||||||+|++.++|.+|++.|++.. ++||.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 3446789999999999999999999999 9999999999753 7999999999999999999999875 78999
Q ss_pred eEEccCCCCC
Q 021958 246 MRIGPATNKK 255 (305)
Q Consensus 246 l~v~~~~~~~ 255 (305)
|+|.|++.+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999998764
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.2e-19 Score=136.91 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=82.9
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|.|+.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344578999999999999999999999 9999999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
.|++.+....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998876654
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8e-19 Score=127.59 Aligned_cols=88 Identities=18% Similarity=0.405 Sum_probs=80.3
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.+|+|..+.. .++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456679999999999999999999999 999999999998853 3799999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99999876654
No 80
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=132.18 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+||+.++++++|+++|++||.|.++++++|+.+++++|||||+|.+.++|++|++.|||..+ .++.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 678999988
Q ss_pred cCC
Q 021958 160 ASF 162 (305)
Q Consensus 160 ~~~ 162 (305)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 81
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=128.60 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.|.+|++..+.. +.++|||||+|.+.++|.+|++.||+..++|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999999 999999999999974 899999999999999999999999999999999999
Q ss_pred ccCCC
Q 021958 249 GPATN 253 (305)
Q Consensus 249 ~~~~~ 253 (305)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99875
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.1e-19 Score=130.01 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|+|..+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345678999999999999999999999 99999999999997 6999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
.|++.....
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2do0_A 89 KMDERALPK 97 (114)
T ss_dssp EECSCCCCC
T ss_pred EEcccCCCC
Confidence 998765544
No 83
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.6e-19 Score=128.06 Aligned_cols=88 Identities=25% Similarity=0.436 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|++..+.. .++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3445679999999999999999999999 999999999999853 3689999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2cqi_A 87 VNWATTPSSQK 97 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEECCCCcccc
Confidence 99998866553
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.4e-19 Score=126.76 Aligned_cols=80 Identities=19% Similarity=0.466 Sum_probs=76.8
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
.++|||+|||.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|+ .|||..++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 47899999999999999999999 9999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q 021958 253 NK 254 (305)
Q Consensus 253 ~~ 254 (305)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=127.20 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=77.2
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
..++|||+||+.++++++|+++|+ .||.|.++.+..+..++. ++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 368999999999999999999999 999999999999876665 899999999999999999999999999999999999
Q ss_pred CCCCC
Q 021958 251 ATNKK 255 (305)
Q Consensus 251 ~~~~~ 255 (305)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=127.80 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCcCCCHHHHH----HHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 171 TPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
...++|||+||+.++++++|+ ++|+ .||.|.+|++..+..+ +|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456899999999999999999 9999 9999999999988654 8899999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 021958 247 RIGPATNKKTV 257 (305)
Q Consensus 247 ~v~~~~~~~~~ 257 (305)
+|++++++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.8e-19 Score=127.14 Aligned_cols=89 Identities=26% Similarity=0.329 Sum_probs=81.6
Q ss_pred CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 167 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
+......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|++ ++..|+|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34556678999999999999999999999 99999999999998899999999999999999999998 5789999999
Q ss_pred EEccCCCCCCCC
Q 021958 247 RIGPATNKKTVS 258 (305)
Q Consensus 247 ~v~~~~~~~~~~ 258 (305)
+|.|++.+....
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cqg_A 86 DCKLPNSKQSQD 97 (103)
T ss_dssp EEECCCTTCCCC
T ss_pred EEEecCCCCcCC
Confidence 999999876653
No 88
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.4e-19 Score=126.82 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||.++++++|+++|+ .||.|.++++..+ ++.++|||||+|.+.++|.+|++.||+..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999 9999999999985 78899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021958 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
|++.+...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99887654
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4e-19 Score=130.15 Aligned_cols=83 Identities=34% Similarity=0.464 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445679999999999999999999999 99999999999998 999999999999999999999999999999999999
Q ss_pred EccCC
Q 021958 248 IGPAT 252 (305)
Q Consensus 248 v~~~~ 252 (305)
|+|++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99976
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-20 Score=128.37 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
.+.++|||+|||.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4578999999999999999999999 999999999999988999999999999999999999999999999999999988
Q ss_pred CCC
Q 021958 251 ATN 253 (305)
Q Consensus 251 ~~~ 253 (305)
.+.
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 91
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=3.1e-19 Score=131.04 Aligned_cols=87 Identities=23% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|++..+..+|.++|||||+|.+.++|.+|++.+ +..++|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 345678999999999999999999999 9999999999999889999999999999999999999986 59999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
.++..+...
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=8.7e-20 Score=138.66 Aligned_cols=88 Identities=15% Similarity=0.282 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE--EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----ee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FC 241 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~----~~ 241 (305)
......++|||+||++++++++|+++|+ .||.|.. |+|+.|..+|+++|||||+|.+. +|.+|+..|||. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 3446678999999999999999999999 9999977 99999999999999999999999 999999999999 99
Q ss_pred cceeeEEccCCCCCCC
Q 021958 242 STRPMRIGPATNKKTV 257 (305)
Q Consensus 242 ~g~~l~v~~~~~~~~~ 257 (305)
+|+.|+|+|++++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999886554
No 93
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=129.05 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||.++++++|+++|+ .||.|.++.++.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568999999999999999999999 99999999899888899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021958 250 PATNK 254 (305)
Q Consensus 250 ~~~~~ 254 (305)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.2e-19 Score=126.73 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=75.3
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM--NGVFCSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~ 245 (305)
....++++|||+||++++++++|+++|+ .||.|.+|.++.+ +|||||+|++.++|.+|++.| ++..++|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 4446789999999999999999999999 9999999988754 899999999999999999977 467899999
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|.|++.+....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999999876654
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=124.92 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .| .|.+++++.+ .+|+++|||||+|.+.++|.+|++ |||..|+|+.|+|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345578999999999999999999999 99 9999999999 689999999999999999999999 9999999999999
Q ss_pred ccCCCCCC
Q 021958 249 GPATNKKT 256 (305)
Q Consensus 249 ~~~~~~~~ 256 (305)
.+++.+..
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99987643
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=131.04 Aligned_cols=85 Identities=32% Similarity=0.563 Sum_probs=80.3
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+||+.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 357999999999999999999999 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
+.+...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876544
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=5.2e-19 Score=124.47 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|++. ++..++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 345678999999999999999999999 999999999999988999999999999999999999964 888999999999
Q ss_pred ccC
Q 021958 249 GPA 251 (305)
Q Consensus 249 ~~~ 251 (305)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.6e-19 Score=129.30 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+|||.++++++|+++|+ .||.|.++.++.+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3468999999999999999999999 999999999999888999999999999999999999999999999999999999
Q ss_pred CCC
Q 021958 251 ATN 253 (305)
Q Consensus 251 ~~~ 253 (305)
++.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 99
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=5.9e-20 Score=130.34 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=74.7
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcC-CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC-CCCCCCCCcceeee
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN-GTPMPNGEQNFRLN 158 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~~~~~~~i~v~ 158 (305)
+++|||+|||.++|+++|+++|++|| .|.++++++|+.+|.++|||||+|.+.++|.+|++.++ +..+ .|+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 47899999999999999999999999 79999999999999999999999999999999998774 5567 67999999
Q ss_pred ccCCCC
Q 021958 159 WASFGA 164 (305)
Q Consensus 159 ~~~~~~ 164 (305)
++..+.
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 998653
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=130.13 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~ 245 (305)
....++++|||+||++++++++|+++|+ .||.|.+|+|+.+ +|||||+|++.++|.+|++.|++ ..|+|+.
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 3445689999999999999999999999 9999999999876 89999999999999999999874 6799999
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|.|++.+....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998876664
No 101
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=127.17 Aligned_cols=87 Identities=28% Similarity=0.453 Sum_probs=80.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 3456678999999999999999999999999999999999988999999999999999999999999999998 67999
Q ss_pred eeeccCCCC
Q 021958 156 RLNWASFGA 164 (305)
Q Consensus 156 ~v~~~~~~~ 164 (305)
+|.++....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999997653
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.1e-19 Score=122.80 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=69.5
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
+..|+|+||++.+||++|+++|. +||.|.++++.. ++|||||+|.+.++|.+|++.||+..++||.|+|++++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 57899999999999999999999 999999999865 49999999999999999999999999999999999985
No 103
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=1.2e-18 Score=129.36 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=80.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999999999 67999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.|+..+..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999986543
No 104
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=127.03 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~ 245 (305)
....++++|||+||+.++++++|+++|+ +||.|.+|.++.+ +|||||+|++.++|.+|++.|++. .++|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3445689999999999999999999999 9999999998754 799999999999999999988654 599999
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|.|++.+....
T Consensus 83 l~V~~a~~~~~~~ 95 (104)
T 1wex_A 83 AFFNYSTSKRITR 95 (104)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCccccC
Confidence 9999998876553
No 105
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=126.54 Aligned_cols=81 Identities=15% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEE--------EEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 150 (305)
...++|||+||+.++++++|+++|++||.|.+ +++..++.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 45689999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCcceeeeccC
Q 021958 151 GEQNFRLNWAS 161 (305)
Q Consensus 151 ~~~~i~v~~~~ 161 (305)
.++.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 67889998863
No 106
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=7.7e-20 Score=165.68 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=81.7
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
..+.++|||+||+.++++++|.++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35578999999999999999999999 99999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021958 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
|+..+...
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EeCCCCCC
Confidence 99876554
No 107
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.7e-18 Score=128.48 Aligned_cols=89 Identities=26% Similarity=0.531 Sum_probs=81.8
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 75 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
.......++|||+||+.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|+|..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 86 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQ 86 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999999 6799
Q ss_pred eeeeccCCCCC
Q 021958 155 FRLNWASFGAG 165 (305)
Q Consensus 155 i~v~~~~~~~~ 165 (305)
|+|.|+.....
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999986543
No 108
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=8.8e-19 Score=137.25 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=82.7
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|.|+.+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 335679999999999999999999999 9999999999999989999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
+|++......
T Consensus 114 ~~a~~~~~~~ 123 (156)
T 1h2v_Z 114 DWDAGFKEGR 123 (156)
T ss_dssp EEESCCCTTC
T ss_pred EECCCCCCcC
Confidence 9998765543
No 109
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=130.38 Aligned_cols=84 Identities=19% Similarity=0.440 Sum_probs=77.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.++++..+. +.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456689999999999999999999999 99999999999885 44899999999999999999999999999999999
Q ss_pred EccCCCC
Q 021958 248 IGPATNK 254 (305)
Q Consensus 248 v~~~~~~ 254 (305)
|++++.+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.6e-19 Score=123.35 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=72.1
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
+|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999 99999999999998899999999999999999999998 8999999999999985
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=130.14 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||.++++++|+++|+ .||.|.+|++..|.. |.++|||||+|.+.++|.+|+. +++..++|+.|+|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 34568999999999999999999999 999999999999986 9999999999999999999999 89999999999999
Q ss_pred cCCC
Q 021958 250 PATN 253 (305)
Q Consensus 250 ~~~~ 253 (305)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 112
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=127.92 Aligned_cols=83 Identities=10% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCCCCCceEEEcCCCc-CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eecce
Q 021958 168 RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTR 244 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~ 244 (305)
....++++|||+|||+ ++++++|+++|+ .||.|.+|+|+.+ +|||||+|++.++|.+|++.|++. .|+|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 3445789999999999 999999999999 9999999999865 689999999999999999998864 59999
Q ss_pred eeEEccCCCCCCC
Q 021958 245 PMRIGPATNKKTV 257 (305)
Q Consensus 245 ~l~v~~~~~~~~~ 257 (305)
.|+|.|++.+...
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 83 PVRVHLSQKYKRI 95 (102)
T ss_dssp ECEEEEECCCTTS
T ss_pred EEEEEECCCCCCC
Confidence 9999999865543
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=131.19 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
....++|||+||+.++++++|+++|+ .|| |.++++..+. .+|+++|||||+|.+.++|.+|+ .|+|..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 35578999999999999999999999 999 9999999987 58999999999999999999999 89999999999999
Q ss_pred ccCCCCC
Q 021958 249 GPATNKK 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 114
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=128.94 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCC--cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCC--CCCCCc
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP--MPNGEQ 153 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--~~~~~~ 153 (305)
...-.+|||+||++++|+++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|.+|++.|+|.. +...|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 355689999999999999999999999995 6799999999999999999999999999999999999974 112689
Q ss_pred ceeeeccCC
Q 021958 154 NFRLNWASF 162 (305)
Q Consensus 154 ~i~v~~~~~ 162 (305)
.|+|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 115
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=129.87 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCcCCCHHHHH---HHHhhcCCCeeEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceecc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRLTG---RTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~---~~f~~~~G~i~~i~i~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 243 (305)
....++|||+|||.++++++|+ ++|+ +||.|.+|.+..+..++ .++|||||+|.+.++|.+|++.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3457899999999999999999 9999 99999999999887644 456999999999999999999999999999
Q ss_pred eeeEEccCCCCCCC
Q 021958 244 RPMRIGPATNKKTV 257 (305)
Q Consensus 244 ~~l~v~~~~~~~~~ 257 (305)
+.|+|.|++.+...
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999999987643
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=8.5e-19 Score=131.92 Aligned_cols=84 Identities=19% Similarity=0.411 Sum_probs=78.9
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+||+.++++++|+++|+ .||.|.+|++..+..++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 468999999999999999999999 9999999999999889999999999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
+.....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 875544
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1e-18 Score=130.35 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=77.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+||+.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 67889
Q ss_pred eeeccC
Q 021958 156 RLNWAS 161 (305)
Q Consensus 156 ~v~~~~ 161 (305)
+|.|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 988763
No 118
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=5.5e-19 Score=145.65 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=90.9
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
..+.++|||+|||.++++++|+++|+ +||.|.+|+|++|..+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcceEEeCCcc----hhhhHHHHhhccc
Q 021958 250 PATNKKTVSGQQQYPKGTFLVVGTGF----CLQIKFKFKYFIG 288 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~g 288 (305)
++........ .....+++++.. ..++.+.|..|+.
T Consensus 91 ~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 91 WSQRDPSLRK----SGVGNIFIKNLDKSIDNKALYDTFSAFGN 129 (213)
T ss_dssp ECCCCTHHHH----HCTTEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred cccccccccc----cccccceECCcccccHHHHHHHHHhhcCC
Confidence 9876543321 122345555432 2334555555543
No 119
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=126.25 Aligned_cols=87 Identities=23% Similarity=0.484 Sum_probs=80.1
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 75 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
+......++|||+||+.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|.+|++.|+|..+ .|+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~ 97 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRP 97 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999 6799
Q ss_pred eeeeccCCC
Q 021958 155 FRLNWASFG 163 (305)
Q Consensus 155 i~v~~~~~~ 163 (305)
|+|.++..+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998754
No 120
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=124.27 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=79.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456678999999999999999999999999999999999998899999999999999999999999999999 67999
Q ss_pred eeeccCC
Q 021958 156 RLNWASF 162 (305)
Q Consensus 156 ~v~~~~~ 162 (305)
+|.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998863
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=129.98 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|++. ++..|+|+.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3468999999999999999999999 999999999999988999999999999999999999998 99999999999999
Q ss_pred CCCCCCCC
Q 021958 251 ATNKKTVS 258 (305)
Q Consensus 251 ~~~~~~~~ 258 (305)
++++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99876653
No 122
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=125.63 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|++||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLIL 87 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 4556789999999999999999999999999999999999988999999999999999999999999999999 67999
Q ss_pred eeeccCCCC
Q 021958 156 RLNWASFGA 164 (305)
Q Consensus 156 ~v~~~~~~~ 164 (305)
+|.++....
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998653
No 123
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.5e-18 Score=137.31 Aligned_cols=85 Identities=26% Similarity=0.419 Sum_probs=80.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
++++|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999999999999999999 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
+++...
T Consensus 81 ~~~~~~ 86 (168)
T 1b7f_A 81 RPGGES 86 (168)
T ss_dssp CCCSST
T ss_pred CCCccc
Confidence 876543
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=3.6e-19 Score=132.14 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|+.||.|.++.+..+ +.++|||||+|.+.++|.+|++.|+|..+ .++.++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 45689999999999999999999999999999999875 45689999999999999999999999999 67899999
Q ss_pred ccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC
Q 021958 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200 (305)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~ 200 (305)
++...... ++++...++++|.++|+ +||.
T Consensus 81 ~a~~~~~~------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp ECCHHHHT------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EecCChhh------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 98743211 67888899999999998 8985
No 125
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=2.3e-18 Score=136.01 Aligned_cols=109 Identities=21% Similarity=0.341 Sum_probs=90.2
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
.++|||+|||.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 58999999999999999999999 99999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCcceEEeCCc----chhhhHHHHhhccc
Q 021958 253 NKKTVSGQQQYPKGTFLVVGTG----FCLQIKFKFKYFIG 288 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~g 288 (305)
+.... .....+++++. ...++.+.+..++.
T Consensus 81 ~~~~~------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 81 PSSAS------IRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp CCCGG------GTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred CCccc------CCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 76543 22233445442 22334555555543
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=126.07 Aligned_cols=85 Identities=18% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999 9999999999654 457999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
+|++.+...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999887654
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=137.70 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcC--CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
...++|||+||+.++|+++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.|+|..| .|+.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4568999999999999999999999999 999999999999999999999999999999999999999999 679999
Q ss_pred eeccCC
Q 021958 157 LNWASF 162 (305)
Q Consensus 157 v~~~~~ 162 (305)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 998863
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=128.85 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cceecceee
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPM 246 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~l 246 (305)
...++|||+|||.++++++|+++|+ .||. |.++.+. .+..++.++|||||+|.+.++|.+|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4578999999999999999999999 9998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEccCCCCCCC
Q 021958 247 RIGPATNKKTV 257 (305)
Q Consensus 247 ~v~~~~~~~~~ 257 (305)
+|.|++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987664
No 129
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=123.16 Aligned_cols=82 Identities=29% Similarity=0.604 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999 67999999
Q ss_pred ccCC
Q 021958 159 WASF 162 (305)
Q Consensus 159 ~~~~ 162 (305)
|+..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 9874
No 130
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=4e-18 Score=124.30 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC-CCccee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~-~~~~i~ 156 (305)
....++|||+|||.++++++|+++|+.||.|.++++..++ ++.++|||||+|.+.++|.+|++.|+|..+.+ .++.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3567899999999999999999999999999999999997 79999999999999999999999999999843 128999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++....
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998654
No 131
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=122.50 Aligned_cols=84 Identities=25% Similarity=0.506 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 3568999999999999999999999999999999999988899999999999999999999999999999 67999999
Q ss_pred ccCCCC
Q 021958 159 WASFGA 164 (305)
Q Consensus 159 ~~~~~~ 164 (305)
++..+.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 998653
No 132
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=125.31 Aligned_cols=88 Identities=18% Similarity=0.457 Sum_probs=80.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEee-CCCCCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCc
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQ 153 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~ 153 (305)
......++|||+|||.++++++|+++|+.||.|.++++..+ +.+++++|||||+|.+.++|.+|++.| ++..+ .++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCC
Confidence 34566789999999999999999999999999999999998 778999999999999999999999999 99999 678
Q ss_pred ceeeeccCCCCC
Q 021958 154 NFRLNWASFGAG 165 (305)
Q Consensus 154 ~i~v~~~~~~~~ 165 (305)
.|+|.|+.....
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999986533
No 133
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-19 Score=132.33 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=78.7
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999999 9999999999999988999999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
+.+...
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 775443
No 134
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=123.52 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 899999 678999
Q ss_pred eeccCCCCC
Q 021958 157 LNWASFGAG 165 (305)
Q Consensus 157 v~~~~~~~~ 165 (305)
|.++..+..
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999986533
No 135
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=124.30 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99986643
No 136
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.1e-18 Score=122.16 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999999 67999998
Q ss_pred ccC
Q 021958 159 WAS 161 (305)
Q Consensus 159 ~~~ 161 (305)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 137
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=2.9e-18 Score=125.26 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC-CCCCcce
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQNF 155 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~~~~~~i 155 (305)
.....++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|+|..+ .+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999874 4467999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999986543
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=4.5e-19 Score=125.61 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=71.5
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcC--CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
.+|||+||+.++|+++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|+|..+ .|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999999 678899988
Q ss_pred cCCC
Q 021958 160 ASFG 163 (305)
Q Consensus 160 ~~~~ 163 (305)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 8754
No 139
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.6e-18 Score=120.80 Aligned_cols=81 Identities=28% Similarity=0.555 Sum_probs=76.4
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
+.+|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 36899999999999999999999999999999999988999999999999999999999999999999 6799999998
Q ss_pred CCC
Q 021958 161 SFG 163 (305)
Q Consensus 161 ~~~ 163 (305)
..+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 754
No 140
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-19 Score=122.65 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=73.1
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
++|||+|||.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999 99999999999998889999999999999999999999999 9999999999986
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.1e-18 Score=140.06 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=89.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.|.+|.++.+..+|.++|||||+|.+.++|.+|++. ++..++|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 345678999999999999999999999 999999999999988999999999999999999999986 899999999999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeCCcc----hhhhHHHHhhccc
Q 021958 249 GPATNKKTVSGQQQYPKGTFLVVGTGF----CLQIKFKFKYFIG 288 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~g 288 (305)
.++..+..............+++++.. ..++.+.|..|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 130 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC
Confidence 998876554333333333455665432 2334555555543
No 142
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=125.74 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999998899999999999999999999999999999 679999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998653
No 143
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=127.63 Aligned_cols=85 Identities=15% Similarity=0.391 Sum_probs=78.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee------
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC------ 241 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~------ 241 (305)
......++|||+|||.++++++|+++|+ .||.|.+++|..+. ++.++|||||+|.+.++|.+|++.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445678999999999999999999999 99999999999998 899999999999999999999999999999
Q ss_pred --cceeeEEccCCCC
Q 021958 242 --STRPMRIGPATNK 254 (305)
Q Consensus 242 --~g~~l~v~~~~~~ 254 (305)
.++.|+|.|++++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998864
No 144
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=125.31 Aligned_cols=86 Identities=20% Similarity=0.382 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC------CCCCCC
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN------GTPMPN 150 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~------g~~~~~ 150 (305)
.....++|||+|||.++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.++ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44567899999999999999999999999999999999999899999999999999999999999999 8888
Q ss_pred CCcceeeeccCCCC
Q 021958 151 GEQNFRLNWASFGA 164 (305)
Q Consensus 151 ~~~~i~v~~~~~~~ 164 (305)
.++.|+|.++..+.
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 67999999998653
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.1e-19 Score=128.72 Aligned_cols=82 Identities=29% Similarity=0.508 Sum_probs=74.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 253 (305)
++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999999 9999999999999889999999999999999 9999999999999999999999987
Q ss_pred CCCC
Q 021958 254 KKTV 257 (305)
Q Consensus 254 ~~~~ 257 (305)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6544
No 146
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=120.63 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.++++. +|||||+|.+.++|.+|++.||+..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45679999999999999999999999 99999999987 6799999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 021958 250 PATNKKTVS 258 (305)
Q Consensus 250 ~~~~~~~~~ 258 (305)
|++.+....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998876653
No 147
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=124.06 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.| +++.+ .+++++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 445689999999999999999999999 99987 56666 58899999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887654
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.3e-18 Score=122.49 Aligned_cols=86 Identities=21% Similarity=0.372 Sum_probs=78.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++|+++|+++|+.||.|.++++..+ ++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEE
Confidence 34567899999999999999999999999999999999998 799999999999999999999999999999 67999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999986543
No 149
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=2.2e-18 Score=130.34 Aligned_cols=86 Identities=19% Similarity=0.352 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|++|++.|+|..| .++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456678999999999999999999999999999999999998999999999999999999999999999999 67999
Q ss_pred eeeccCCC
Q 021958 156 RLNWASFG 163 (305)
Q Consensus 156 ~v~~~~~~ 163 (305)
+|.|+..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998754
No 150
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-18 Score=122.71 Aligned_cols=84 Identities=18% Similarity=0.380 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 151
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=132.84 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.++++..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455689999999999999999999999 999999999999988999999999999999999999999999999999999
Q ss_pred EccC
Q 021958 248 IGPA 251 (305)
Q Consensus 248 v~~~ 251 (305)
|+|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 152
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=122.74 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEEE
Confidence 34568999999999999999999999999999999999998899999999999999999999999999999 6799999
Q ss_pred eccC
Q 021958 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 8874
No 153
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=123.91 Aligned_cols=86 Identities=22% Similarity=0.490 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999 6789999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99876543
No 154
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7e-19 Score=130.30 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCe-eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i-~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
.....++|||+|||+++++++|+++|+ .||.| .+|+|+.|. +|+++|||||+|.+.++|.+|++. |+..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345678999999999999999999999 99999 899999998 999999999999999999999987 99999999999
Q ss_pred EccCCCCC
Q 021958 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|.+++.+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99988755
No 155
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=1e-18 Score=126.26 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCc------ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 79 GEIRTLWIGDLQY------WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 79 ~~~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
...++|||+|||. ++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 4568999999999 999999999999999999999999999999999999999999999999999999999 55
Q ss_pred -cceeeeccC
Q 021958 153 -QNFRLNWAS 161 (305)
Q Consensus 153 -~~i~v~~~~ 161 (305)
+.|+|.++.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 889998875
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.1e-18 Score=124.92 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.++++. .++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4468999999999999999999999 99999999997 3489999999999999999999999999999999999
Q ss_pred CCCC
Q 021958 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 157
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=122.91 Aligned_cols=87 Identities=31% Similarity=0.439 Sum_probs=78.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .|+ .+.++.+..++.++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFD-GSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTST-TCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhc-CCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999999999999998 774 577888888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|.|++++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2fc8_A 86 LDWAKPKGEGG 96 (102)
T ss_dssp EEECCCCCSSS
T ss_pred EEEecCCCCCC
Confidence 99999876653
No 158
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=125.39 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+||+.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 35568999999999999999999999999999999999998999999999999999999999999999999 6789999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++..+
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 988643
No 159
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=123.36 Aligned_cols=80 Identities=19% Similarity=0.362 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--ceeeE
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMR 247 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~ 247 (305)
..+.++|||+||+.++++++|+++|+ .||.|.++.+..+ +|||||+|.+.++|.+|++.||+..++ |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 34578999999999999999999999 9999999998754 789999999999999999999999999 99999
Q ss_pred EccCCCCCC
Q 021958 248 IGPATNKKT 256 (305)
Q Consensus 248 v~~~~~~~~ 256 (305)
|+|++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999988654
No 160
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=123.65 Aligned_cols=84 Identities=45% Similarity=0.884 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcE-EEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc--
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN-- 154 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~-- 154 (305)
....++|||+|||.++++++|+++|++||.|. ++++++++.+++++|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--GATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--SCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--CCCcc
Confidence 45678999999999999999999999999999 9999999989999999999999999999999999999994 566
Q ss_pred --eeeeccCCC
Q 021958 155 --FRLNWASFG 163 (305)
Q Consensus 155 --i~v~~~~~~ 163 (305)
+++.|+...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998754
No 161
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=125.16 Aligned_cols=83 Identities=22% Similarity=0.429 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.+|++..+ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34578999999999999999999999 9999999999876 7899999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 021958 250 PATNKKTVSG 259 (305)
Q Consensus 250 ~~~~~~~~~~ 259 (305)
|++.+.....
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4g_A 95 WGKESPDMTS 104 (109)
T ss_dssp CCCCCCSSCC
T ss_pred ecCCCCCCCC
Confidence 9998776543
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-19 Score=130.72 Aligned_cols=86 Identities=16% Similarity=0.349 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.. .++.+..++.++|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34578999999999999999999999 9999988 666776788999999999999999999998 99999999999999
Q ss_pred cCCCCCCCC
Q 021958 250 PATNKKTVS 258 (305)
Q Consensus 250 ~~~~~~~~~ 258 (305)
+++.+....
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 998876553
No 163
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=126.11 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=81.2
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccC
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (305)
++|||+|||.++|+++|+++|++||.|.++.+..+ ++|||||+|.+.++|.+|++.|+|..+ .++.++|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 48999999999999999999999999999999876 678999999999999999999999998 67889999998
Q ss_pred CCCCCCC------CCCCCceEEEcCCC
Q 021958 162 FGAGEKR------DDTPDHTIFVGDLA 182 (305)
Q Consensus 162 ~~~~~~~------~~~~~~~l~v~nlp 182 (305)
....... ......+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 7643321 12336789999996
No 164
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=126.59 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCcCC------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021958 169 DDTPDHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 242 (305)
.....++|||+|||..+ ++++|+++|+ .||.|.+|.+. ..+|.++|||||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34457899999999999 7899999999 99999999988 358899999999999999999999999999999
Q ss_pred ce-eeEEccCCCCCC
Q 021958 243 TR-PMRIGPATNKKT 256 (305)
Q Consensus 243 g~-~l~v~~~~~~~~ 256 (305)
|+ .|+|.++....+
T Consensus 88 g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 88 KQHTFRVNLFTDFDK 102 (105)
T ss_dssp TTCEEEEECSCCCCC
T ss_pred CCceEEEEEcchHhh
Confidence 98 999999876543
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=124.79 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~-i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
.....++|||+|||+++++++|+++|+ .||.|.+ |+|..+ .+|+++|||||+|.+.++|.+|++. ++..|+||.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 345678999999999999999999999 9999997 888888 6899999999999999999999998 99999999999
Q ss_pred EccCCCCC
Q 021958 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|.+++.+.
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 166
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2e-18 Score=123.79 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=76.9
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
.++|||+||+.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.++|.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEc
Confidence 57999999999999999999999999999999999988899999999999999999999999999999 6799999999
Q ss_pred CCC
Q 021958 161 SFG 163 (305)
Q Consensus 161 ~~~ 163 (305)
...
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 167
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=123.44 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc-----ee
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST-----RP 245 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 245 (305)
...++|||+|||.++++++|+++|+ .||.|.+|.|+.+ |||||+|.+.++|.+|++.||+..|+| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4578999999999999999999999 9999999999865 899999999999999999999999999 99
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|++++++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876554
No 168
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=129.86 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCcCCCHHHHH----HHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
..++++|||+||++.+++++|+ ++|+ +||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4567899999999999999876 6899 999999887743 6788999999999999999999999999999999
Q ss_pred eEEccCCCCCCC
Q 021958 246 MRIGPATNKKTV 257 (305)
Q Consensus 246 l~v~~~~~~~~~ 257 (305)
|+|.|++.+...
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999876544
No 169
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=126.04 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=80.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcE--------EEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCC
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 147 (305)
......++|||+|||.++|+++|+++|++||.|. .+++..++.+++++|||||+|.+.++|.+|++.|+|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred CCCCCcceeeeccCCCCC
Q 021958 148 MPNGEQNFRLNWASFGAG 165 (305)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~ 165 (305)
+ .++.|+|.++.....
T Consensus 90 ~--~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 F--QGSKLKVSLARKKPP 105 (113)
T ss_dssp E--TTEECEEECSSCCCC
T ss_pred c--CCCEEEEEECCCCCC
Confidence 9 679999999986543
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=125.74 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=73.8
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 253 (305)
++|||+|||.++++++|+++|+ .||.|.++.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|+|.|++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999999 9999999999877 589999999999999999999999999999999999988
Q ss_pred CCCCC
Q 021958 254 KKTVS 258 (305)
Q Consensus 254 ~~~~~ 258 (305)
+....
T Consensus 75 ~~~~~ 79 (101)
T 2hvz_A 75 MPRRS 79 (101)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 76543
No 171
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=124.89 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 86 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 86 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999 6899999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 172
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9e-18 Score=122.00 Aligned_cols=85 Identities=20% Similarity=0.443 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.|| |.+++++.++.+++++|||||+|.+.++|.+|+ .|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEE
Confidence 345678999999999999999999999997 999999999989999999999999999999999 8999999 679999
Q ss_pred eeccCCCCC
Q 021958 157 LNWASFGAG 165 (305)
Q Consensus 157 v~~~~~~~~ 165 (305)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999986543
No 173
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=122.63 Aligned_cols=85 Identities=18% Similarity=0.376 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCC---CCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ---TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
.+.++|||+|||.++++++|+++|+.||.|.++++..++. +++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4568999999999999999999999999999999999876 568999999999999999999999999999 67999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999986543
No 174
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=7.4e-18 Score=122.46 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+||+.++++++|+++|+ .||.|.+|++. ++||||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 45678999999999999999999999 99999999986 5599999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 021958 250 PATNKKTVSG 259 (305)
Q Consensus 250 ~~~~~~~~~~ 259 (305)
|++.+.....
T Consensus 79 ~a~~~~~~~~ 88 (103)
T 2dgu_A 79 FAKPPDQKRK 88 (103)
T ss_dssp ECCCCCCCCC
T ss_pred EcCCCcccch
Confidence 9988776644
No 175
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=125.67 Aligned_cols=85 Identities=24% Similarity=0.436 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
+....++|||+||+.++++++|+++|++||.|.++.+..++ +++++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 79 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIK 79 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34667899999999999999999999999999999999998 899999999999999999999999999999 678999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++....
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 99997654
No 176
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=121.65 Aligned_cols=87 Identities=25% Similarity=0.480 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|+.||.|.++++..++. .++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeE
Confidence 3456679999999999999999999999999999999999853 3689999999999999999999999999 67999
Q ss_pred eeeccCCCCCC
Q 021958 156 RLNWASFGAGE 166 (305)
Q Consensus 156 ~v~~~~~~~~~ 166 (305)
+|.|+......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876443
No 177
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.5e-18 Score=129.18 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
....++|||+||++++++++|+++|+ .||. |.+|+|+.+.. |+++|||||+|.+.++|.+|++ +|+..|+||.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34578999999999999999999999 9999 89999999975 9999999999999999999999 99999999999
Q ss_pred EEccCCCCC
Q 021958 247 RIGPATNKK 255 (305)
Q Consensus 247 ~v~~~~~~~ 255 (305)
+|.+++.+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986543
No 178
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1e-18 Score=132.76 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
.....++|||+|||+++|+++|+++|+ .||. |.+|+|+.|.. |+++|||||+|.+.++|.+|++ +|+..|+||.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 345578999999999999999999999 9999 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEccCCCC
Q 021958 246 MRIGPATNK 254 (305)
Q Consensus 246 l~v~~~~~~ 254 (305)
|+|.+++.+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998653
No 179
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-18 Score=122.05 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhh-cCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCC-CCCCCcc
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQN 154 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~~~~~~ 154 (305)
+....++|||+||+.++|+++|+++|+. ||.|.+++++.++ +++++|||||+|.+.++|.+|++.|+|.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999998 8 6788
Q ss_pred eeeeccCCCC
Q 021958 155 FRLNWASFGA 164 (305)
Q Consensus 155 i~v~~~~~~~ 164 (305)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999987553
No 180
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=118.92 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceecceeeE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMR 247 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~ 247 (305)
.....++|||+|||.++++++|+++|+ .||.|.++++..+ +|||||+|.+.++|.+|++.| ++..++|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 345678999999999999999999999 9999999999864 799999999999999999999 99999999999
Q ss_pred EccCC
Q 021958 248 IGPAT 252 (305)
Q Consensus 248 v~~~~ 252 (305)
|+|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 181
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=123.06 Aligned_cols=83 Identities=23% Similarity=0.423 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.++++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 3445678999999999999999999999 9999999999754 78999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|++.+...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpj_A 83 VRFACHSASL 92 (99)
T ss_dssp EEESSCCSCC
T ss_pred EEEcCCCCCC
Confidence 9999886654
No 182
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=124.86 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|||+++++++|+++|+ .||.+ +|+|+.|. +++++|||||+|.+.++|.+|++ +|+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45568999999999999999999999 99955 99999997 89999999999999999999995 79999999999999
Q ss_pred cCCCCCCC
Q 021958 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
++......
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 98765543
No 183
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=129.38 Aligned_cols=88 Identities=26% Similarity=0.438 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
..+.++|||+||+.++++++|+++|+ .||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999999 99999544333332378899999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 021958 250 PATNKKTVS 258 (305)
Q Consensus 250 ~~~~~~~~~ 258 (305)
|++.+....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876653
No 184
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=126.01 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeC-CCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+||+.++++++|+++|+.|| |.++++..++ .+|+++|||||+|.+.++|.+|+ .|+|..+ .++.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEE
Confidence 35568999999999999999999999999 9999999998 58999999999999999999999 8999999 678899
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9988743
No 185
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=122.91 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEE-EEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+|||.++++++|+++|+.||.|.++ ++..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 356899999999999999999999999999999 9999988999999999999999999999999999999 6799999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
.++....
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9997654
No 186
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=127.17 Aligned_cols=83 Identities=11% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cceeccee
Q 021958 169 DDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRP 245 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~ 245 (305)
...++++|||+||+++ +++++|+++|+ .||.|.+|+|+.+ +|||||+|.+.++|.+|++.|+ +..|+||.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3556899999999998 99999999999 9999999999743 8999999999999999999886 45699999
Q ss_pred eEEccCCCCCCCC
Q 021958 246 MRIGPATNKKTVS 258 (305)
Q Consensus 246 l~v~~~~~~~~~~ 258 (305)
|+|.|++.+....
T Consensus 94 l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 94 VKVDLSEKYKKLV 106 (112)
T ss_dssp CEEEEECSCSSSS
T ss_pred EEEEECccccccc
Confidence 9999998766553
No 187
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=121.29 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999 67888887
Q ss_pred ccC
Q 021958 159 WAS 161 (305)
Q Consensus 159 ~~~ 161 (305)
|+.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 188
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-19 Score=132.38 Aligned_cols=85 Identities=16% Similarity=0.339 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||+++++++|+++|+ .||.|.++.++.+..+|+++|||||+|.+.++|.+|++ ||+..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345678999999999999999999999 99999987777776799999999999999999999999 9999999999999
Q ss_pred ccCCCCC
Q 021958 249 GPATNKK 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
.+++.+.
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 189
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=129.50 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEE--EEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCC----CCCC
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT----PMPN 150 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~----~~~~ 150 (305)
.....++|||+||+.++|+++|+++|++||.|.. |++++|+.+|+++|||||+|.+. +|.+|++.|+|. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999977 99999999999999999999999 999999999999 77
Q ss_pred CCcceeeeccCCC
Q 021958 151 GEQNFRLNWASFG 163 (305)
Q Consensus 151 ~~~~i~v~~~~~~ 163 (305)
.++.|+|.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 6788999988754
No 190
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=120.73 Aligned_cols=74 Identities=18% Similarity=0.361 Sum_probs=68.4
Q ss_pred CceEEEcCCCcCC------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce-e
Q 021958 173 DHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-P 245 (305)
Q Consensus 173 ~~~l~v~nlp~~~------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~ 245 (305)
+++|||+|||..+ ++++|+++|+ .||.|.++.+. ..+|+++|||||+|.+.++|.+|++.|||..++|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7899999999 99999999987 35889999999999999999999999999999999 8
Q ss_pred eEEc
Q 021958 246 MRIG 249 (305)
Q Consensus 246 l~v~ 249 (305)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8874
No 191
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-17 Score=118.70 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=73.5
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcC--CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~--G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
......++|||+||+.++++++|+++|+ .| |.|.++++. +|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999999 99 999988764 679999999999999999999999999999
Q ss_pred eEEccCCCCCCC
Q 021958 246 MRIGPATNKKTV 257 (305)
Q Consensus 246 l~v~~~~~~~~~ 257 (305)
|+|.|++++...
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887654
No 192
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=6.7e-18 Score=123.61 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.++.+. +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456679999999999999999999999 99999999997 78999999999999999999999999999999
Q ss_pred EccCCCCCC
Q 021958 248 IGPATNKKT 256 (305)
Q Consensus 248 v~~~~~~~~ 256 (305)
|.|++.+..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987654
No 193
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.6e-18 Score=143.93 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=77.3
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCC--CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G--~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
..++|||+||++++++++|+++|+ .|| .|.+|+|+.|+.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 467899999999999999999999 999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021958 250 PATNK 254 (305)
Q Consensus 250 ~~~~~ 254 (305)
+++..
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98753
No 194
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=123.95 Aligned_cols=85 Identities=28% Similarity=0.511 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++|+++|+++|++||.|.++++.+++.+++++|||||+|.+.++|.+|++.+++ .+ .++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEE
Confidence 3456779999999999999999999999999999999999998999999999999999999999999998 67 67999
Q ss_pred eeeccCCC
Q 021958 156 RLNWASFG 163 (305)
Q Consensus 156 ~v~~~~~~ 163 (305)
+|.++...
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999754
No 195
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=118.76 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+|||.++++++|+++|+ .||.|.++++. ++||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3445678999999999999999999999 99999999987 44999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|.|++.+...
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887554
No 196
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.1e-18 Score=125.33 Aligned_cols=85 Identities=19% Similarity=0.361 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.|+...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9998754
No 197
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=9.7e-18 Score=120.34 Aligned_cols=78 Identities=14% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCc-CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 169 DDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
.....++|||+||+. ++++++|+++|+ .||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345689999999998 999999999999 99999999982 78999999999999999999999999999999
Q ss_pred EccCCCCC
Q 021958 248 IGPATNKK 255 (305)
Q Consensus 248 v~~~~~~~ 255 (305)
|+|++.+.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99988653
No 198
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=121.58 Aligned_cols=83 Identities=22% Similarity=0.419 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCC-CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+|||.++++++|+++|+.|| |.+++++.++.+ ++++|||||+|.+.++|.+|+ .|++..+ .++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 9999999 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 199
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2e-18 Score=124.00 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCcCCCHHHHH----HHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
..++++|||+||+.++++++|+ ++|+ .||.|.+|.+.. +|.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 4567899999999999999999 9999 999999998863 5677999999999999999999999999999999
Q ss_pred eEEccCCCCCC
Q 021958 246 MRIGPATNKKT 256 (305)
Q Consensus 246 l~v~~~~~~~~ 256 (305)
|+|.|++.+..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999988654
No 200
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=117.55 Aligned_cols=81 Identities=17% Similarity=0.367 Sum_probs=74.0
Q ss_pred CCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
......++|||+||+.++++++|+++|+ .||.|.++.+. ++||||+|.+.++|.+|++.||+..++|+.|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3445679999999999999999999999 99999999986 44999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|+|++.+...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 201
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=1.1e-17 Score=123.12 Aligned_cols=96 Identities=22% Similarity=0.391 Sum_probs=79.2
Q ss_pred CcceeeeccCCCCCCCCCCCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHH
Q 021958 152 EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (305)
Q Consensus 152 ~~~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (305)
+..+++..+..... .......++|||+||+.+ +++++|+++|+ .||.|.+|.+ ++|||||+|.+.++|.
T Consensus 7 g~~~~~~~s~~~~~-~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 7 GMSLKLQASNVTNK-NDPKSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp SCCCCCCCCCSCCS-CCCTTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CcccccccCCCCCC-CCCCCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 44555554443211 223345689999999999 99999999999 9999999998 3899999999999999
Q ss_pred HHHHHhCCceecceeeEEccCCCCCCC
Q 021958 231 RAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 231 ~a~~~l~~~~~~g~~l~v~~~~~~~~~ 257 (305)
+|++.||+..|+|+.|+|.|++.....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999865444
No 202
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=121.97 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCC--CCCCCCCcce
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQNF 155 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~~~~~~i 155 (305)
+...++|||+|||+++|+++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.+++ ..+ .|+.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 355789999999999999999999999999999999875 58999999999999999998865 556 68999
Q ss_pred eeeccCCCCCC
Q 021958 156 RLNWASFGAGE 166 (305)
Q Consensus 156 ~v~~~~~~~~~ 166 (305)
+|.|+..+...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999866443
No 203
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=122.81 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345568999999999999999999999999999888999988999999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9988643
No 204
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-17 Score=119.53 Aligned_cols=86 Identities=21% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|+.||.|.++++..++. .++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456679999999999999999999999999999999999863 4899999999999999999999999999 67999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999986543
No 205
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=124.90 Aligned_cols=83 Identities=25% Similarity=0.565 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|+.||.|.++++..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 67899999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 98754
No 206
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=122.60 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|+.||.|.++++++++. |+++|||||+|.+.++|.+|++ ++|..+ .|+.|+|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999986 9999999999999999999997 899988 6788888
Q ss_pred eccC
Q 021958 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
.|+.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 8764
No 207
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=120.61 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 344578999999999999999999999 999997 666644 56899999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 021958 249 GPATNKKT 256 (305)
Q Consensus 249 ~~~~~~~~ 256 (305)
.+++++..
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 208
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.9e-19 Score=134.54 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=75.1
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccCCCCCCCCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE
Q 021958 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (305)
Q Consensus 124 g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~ 203 (305)
++||.+|...+.+..++....... + +....-... ...........++|||+|||+++++++|+++|+ .|| |.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--g-g~~~g~~~g--~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~~ 74 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT--G-GQQMGRGSG--DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PVR 74 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CSE
T ss_pred CcccccccCccccchhcccchhcc--C-CCCCCCCCC--CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-CeE
Confidence 578888887777766665433221 1 111100000 011123345578999999999999999999999 999 679
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021958 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 204 i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 257 (305)
|+|+.|.. ++++|||||+|.+.++|++|+ .+|+..|+||.|+|.+++.+...
T Consensus 75 v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 75 VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 99999974 999999999999999999999 78999999999999998876543
No 209
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.1e-18 Score=124.55 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+||+.++|+++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.+ +..+ .|+.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999875 5677 67999
Q ss_pred eeeccCCC
Q 021958 156 RLNWASFG 163 (305)
Q Consensus 156 ~v~~~~~~ 163 (305)
++.++..+
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99998754
No 210
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=4.4e-18 Score=124.65 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCC-CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G-~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....+|||+|||+++++++|+++|+ .|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3468999999999999999999999 999 899998853 2469999999999999999999999999999999999
Q ss_pred cCCCC
Q 021958 250 PATNK 254 (305)
Q Consensus 250 ~~~~~ 254 (305)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 211
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=120.52 Aligned_cols=82 Identities=21% Similarity=0.412 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.||.|.++++..++. ++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 345678999999999999999999999999999999999975 99999999999999999999999999999 679999
Q ss_pred eeccC
Q 021958 157 LNWAS 161 (305)
Q Consensus 157 v~~~~ 161 (305)
|.++.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 99886
No 212
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=8.7e-19 Score=119.69 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=71.5
Q ss_pred eEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 175 ~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
+|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|||||+|.+.++|.+|++. ++..++|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999 999999999999988999999999999999999999985 899999999999875
No 213
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-17 Score=131.89 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=88.4
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 253 (305)
++|||+|||.++++++|+++|+ .||.|.++++..+. +++++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999999 99999999999986 578999999999999999999999999999999999999977
Q ss_pred CCCCCCCCCCCCcceEEeCCc----chhhhHHHHhhccce
Q 021958 254 KKTVSGQQQYPKGTFLVVGTG----FCLQIKFKFKYFIGW 289 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~g~ 289 (305)
+.... ......+++++. ...++.+.+..++..
T Consensus 79 ~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i 114 (166)
T 3md3_A 79 SQQSS----SDDTFNLFVGDLNVNVDDETLRNAFKDFPSY 114 (166)
T ss_dssp CCCCC----CTTCEEEEEESCCTTCCHHHHHHHHTTSTTE
T ss_pred CCCCC----CCCCceEEECCCCCCCCHHHHHHHHhccCCe
Confidence 65432 233445555542 223445555555443
No 214
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=124.48 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=72.6
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
..+|||+|||+++++++|+++|+ .| .|.+|+|+.|. +|+++|||||+|.+.++|.+|+ .+|+..|+||.|+|..++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 47899999999999999999999 99 89999999997 4999999999999999999999 689999999999998876
Q ss_pred CC
Q 021958 253 NK 254 (305)
Q Consensus 253 ~~ 254 (305)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 215
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=122.62 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999 99988766 237888999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (96)
T 1fjc_A 86 YYTGEKGGT 94 (96)
T ss_dssp EECSSSCCC
T ss_pred EEcCCCCCC
Confidence 999887654
No 216
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=7e-18 Score=125.14 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
...+++|||+|||.++++++|+++|+ .||.|.+|.+..+ +.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999 9999999999865 4559999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021958 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
|++++...
T Consensus 81 ~a~~~~~~ 88 (115)
T 3lqv_A 81 YYNANRAF 88 (115)
T ss_dssp ECCHHHHT
T ss_pred EecCChhh
Confidence 99875544
No 217
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=7e-18 Score=118.62 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++. ++..+ .|+.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE--CCEEEE
Confidence 446678999999999999999999999999999999999998999999999999999999999954 77777 678888
Q ss_pred eecc
Q 021958 157 LNWA 160 (305)
Q Consensus 157 v~~~ 160 (305)
+.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 218
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=126.75 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+||+.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|+ .|+|..| .++.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEE
Confidence 345689999999999999999999999999999999999988999999999999999999999 9999999 6789999
Q ss_pred eccCC
Q 021958 158 NWASF 162 (305)
Q Consensus 158 ~~~~~ 162 (305)
.++..
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 88764
No 219
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-17 Score=118.56 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=77.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++ ++..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l 85 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWC 85 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEE
Confidence 345667899999999999999999999999999999999999899999999999999999999997 46666 67999
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++..+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999986543
No 220
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=121.35 Aligned_cols=85 Identities=25% Similarity=0.438 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|++. ++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEE
Confidence 456779999999999999999999999999999999999988999999999999999999999988 99998 679999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++..+.
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99987653
No 221
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=117.53 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+||+.++++++|+++|+ .||.|.+| +.+..++. ||||+|.+.++|.+|++ |||..|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3467999999999999999999999 99999987 55655554 99999999999999999 999999999999999
Q ss_pred CCCCCCCC
Q 021958 251 ATNKKTVS 258 (305)
Q Consensus 251 ~~~~~~~~ 258 (305)
+..+....
T Consensus 79 a~~~~~~~ 86 (94)
T 2e5g_A 79 REQKEFQS 86 (94)
T ss_dssp SCCSCCCC
T ss_pred CCcCCCCC
Confidence 88765543
No 222
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-17 Score=120.55 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|++||.|.++++..++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 34557899999999999999999999999999999999997 599999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9988754
No 223
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=127.13 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCC---eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~---i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
.....++|||+|||+++++++|+++|+ .||. |.+|+|+.+.. |+++|||||+|.+.++|.+|++ +|+..++||.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345678999999999999999999999 9998 89999999976 9999999999999999999999 9999999999
Q ss_pred eEEccCCCCC
Q 021958 246 MRIGPATNKK 255 (305)
Q Consensus 246 l~v~~~~~~~ 255 (305)
|+|.+++.+.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 224
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-19 Score=134.39 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=81.2
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~--------i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 241 (305)
..+.++|||+||+.++++++|+++|+ .||.|.+ |++..+..++.++|||||+|.+.++|.+|++.|||..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 34578999999999999999999999 9999999 89999988899999999999999999999999999999
Q ss_pred cceeeEEccCCCCCCC
Q 021958 242 STRPMRIGPATNKKTV 257 (305)
Q Consensus 242 ~g~~l~v~~~~~~~~~ 257 (305)
+|+.|+|.|++.+...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887554
No 225
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=124.24 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|++||.|.++++..++ +.++|||||+|.+.++|++|++.|+|..+ .|+.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999985 45899999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998753
No 226
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.4e-17 Score=121.90 Aligned_cols=82 Identities=17% Similarity=0.349 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 679999
Q ss_pred eeccC
Q 021958 157 LNWAS 161 (305)
Q Consensus 157 v~~~~ 161 (305)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98875
No 227
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.8e-17 Score=116.75 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|++||.|.++++.++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 345789999999999999999999999999999999884 689999999999999999999999999999 6789999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 988754
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.1e-17 Score=118.20 Aligned_cols=80 Identities=19% Similarity=0.421 Sum_probs=75.5
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
+.++|||+|||.++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|+ .++|..+ .++.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4589999999999999999999999999999999999889999999999999999999999 9999999 679999998
Q ss_pred cCC
Q 021958 160 ASF 162 (305)
Q Consensus 160 ~~~ 162 (305)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 864
No 229
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.1e-18 Score=115.84 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=70.3
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
+|||+|||.++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|++|++ ++|..+ .++.+++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999996 899999 6788888775
No 230
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=2.7e-17 Score=122.90 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecc--eeeE
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY-GFVRFGDESEQLRAMTEMNGVFCST--RPMR 247 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~ 247 (305)
.....|||+||++.+++++|+++|+ +||.|.+|++..+. +|| |||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3445688999999999999999999 99999999887642 677 9999999999999999999999988 9999
Q ss_pred EccCCCCCCC
Q 021958 248 IGPATNKKTV 257 (305)
Q Consensus 248 v~~~~~~~~~ 257 (305)
|+|++.+.-.
T Consensus 100 I~~ak~~~l~ 109 (130)
T 3zzy_A 100 IDFSKLTSLN 109 (130)
T ss_dssp EEECSCSSCC
T ss_pred EEecCCCcee
Confidence 9999987544
No 231
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.5e-17 Score=125.42 Aligned_cols=85 Identities=20% Similarity=0.384 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++|+++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..| .++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 335578999999999999999999999999999999999988999999999999999999999999999999 678999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.|+...
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9998754
No 232
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=119.18 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceecceeeE
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMR 247 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~ 247 (305)
....++|||+||+.++++++|+++|+ .||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 34578999999999999999999999 9999 6666552 388999999999999999999999 999999999
Q ss_pred EccCCCCCCCC
Q 021958 248 IGPATNKKTVS 258 (305)
Q Consensus 248 v~~~~~~~~~~ 258 (305)
|+|++.+....
T Consensus 77 v~~a~~~~~~~ 87 (93)
T 2cqh_A 77 VDYSVSKKLRS 87 (93)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCccccC
Confidence 99998876553
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-17 Score=118.17 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=75.1
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++|+++|+++|++||.|.++++..+ +.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 34456789999999999999999999999999999998553 56899999999999999999999999999 67999
Q ss_pred eeeccCCCC
Q 021958 156 RLNWASFGA 164 (305)
Q Consensus 156 ~v~~~~~~~ 164 (305)
+|.|+....
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999997653
No 234
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=118.92 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC--CCCCCCCCc
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQ 153 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~~~~~ 153 (305)
......++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.++ +..+ .|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr 81 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQ 81 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCc
Confidence 34456789999999999999999999999999999988764 6899999999999999999875 4556 789
Q ss_pred ceeeeccCCCCCC
Q 021958 154 NFRLNWASFGAGE 166 (305)
Q Consensus 154 ~i~v~~~~~~~~~ 166 (305)
.|+|.|+..+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999999866443
No 235
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-17 Score=119.06 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC------
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN------ 150 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~------ 150 (305)
.....++|||+|||.++++++|+++|+.||.|.++++..++ ++.++|||||+|.+.++|.+|++.|+|..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999854
Q ss_pred CCcceeeeccCC
Q 021958 151 GEQNFRLNWASF 162 (305)
Q Consensus 151 ~~~~i~v~~~~~ 162 (305)
.++.+++.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 357788888764
No 236
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1e-17 Score=120.09 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCc-CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 170 DTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 170 ~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
..+.++|||+|||. ++++++|+++|+ .||.|.++.+. +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45688999999998 999999999999 99999999984 789999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
.|++.+...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876554
No 237
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=117.80 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=75.3
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCC-ccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ-IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
..++|||+|||.++|+++|+++|+.||.|.++.+..++.++. ++|||||+|.+.++|.+|++.|+|..+ .|+.|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 457999999999999999999999999999999999987665 899999999999999999999999999 67999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88643
No 238
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.1e-17 Score=128.12 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc--eeeEE
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST--RPMRI 248 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v 248 (305)
....+|||+||++.+++++|+++|+ +||.|.+|+|..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3456789999999999999999999 9999999998644 247899999999999999999999999965 99999
Q ss_pred ccCCCCCCC
Q 021958 249 GPATNKKTV 257 (305)
Q Consensus 249 ~~~~~~~~~ 257 (305)
+|++.+...
T Consensus 119 ~~Ak~~~l~ 127 (164)
T 1sjr_A 119 DFSKLTSLN 127 (164)
T ss_dssp EECSSSSCC
T ss_pred EEecCCccc
Confidence 999987543
No 239
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=4e-18 Score=120.69 Aligned_cols=79 Identities=23% Similarity=0.470 Sum_probs=72.9
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccC
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (305)
++|||+|||.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.+ |.+|++.|+|..+ .|+.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999988999999999999999 9999999999999 67899999887
Q ss_pred CC
Q 021958 162 FG 163 (305)
Q Consensus 162 ~~ 163 (305)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 240
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=117.85 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+||+.++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++..+...++.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998764 589999999999999999988776533378999999
Q ss_pred ccCCCCCC
Q 021958 159 WASFGAGE 166 (305)
Q Consensus 159 ~~~~~~~~ 166 (305)
|+..+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99865443
No 241
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=114.79 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|| ++++++|+++|+ .||.|.+|.+. .++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999996 899999999999 99999999984 45899999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 021958 249 GPATNKKTVS 258 (305)
Q Consensus 249 ~~~~~~~~~~ 258 (305)
.|++.+....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9998876553
No 242
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=6.7e-18 Score=120.76 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=74.7
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|+|..+ .++.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEe
Confidence 358999999999999999999999999999999999988999999999999999999999999999999 679999988
Q ss_pred cC
Q 021958 160 AS 161 (305)
Q Consensus 160 ~~ 161 (305)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 243
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=112.66 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCCce-EEEcCCCcCCCHHH----HHHHHhhcC-CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce
Q 021958 171 TPDHT-IFVGDLAADVTDYM----LQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (305)
Q Consensus 171 ~~~~~-l~v~nlp~~~~~~~----l~~~f~~~~-G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 244 (305)
.++.+ |||+||++++++++ |+++|+ .| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34566 99999999999988 558999 99 599877 23 9999999999999999999999999999
Q ss_pred eeEEccCCCCCCCC
Q 021958 245 PMRIGPATNKKTVS 258 (305)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (305)
.|+|+|++.+.+.-
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999999887664
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=126.30 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 678899
Q ss_pred eecc
Q 021958 157 LNWA 160 (305)
Q Consensus 157 v~~~ 160 (305)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 8875
No 245
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=3.2e-17 Score=123.23 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9998754
No 246
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-17 Score=117.92 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEE-EEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+|||.++|+++|+++|+.||.|.+ +++..+ .+|+++|||||+|.+.++|.+|++. ++..+ .++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEE
Confidence 355689999999999999999999999999987 888888 6899999999999999999999987 99888 678899
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9888654
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=122.09 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=71.6
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+|||.++++++|+++|+ .||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357999999999999999999999 999999998864 4789999999999999999999999999999999998
Q ss_pred CCCCC
Q 021958 252 TNKKT 256 (305)
Q Consensus 252 ~~~~~ 256 (305)
+...-
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 77543
No 248
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.2e-17 Score=137.68 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=75.3
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
.++|||+|||.++++++|+++|+ .||.|.+|+++.+..++.++|||||+|.+.++|.+|++.|++..|+|+.|+|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 57999999999999999999999 99999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 021958 253 NKK 255 (305)
Q Consensus 253 ~~~ 255 (305)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 249
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=121.69 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=71.8
Q ss_pred ceEEEcCC----CcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 021958 174 HTIFVGDL----AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESE----QLRAMT--EMNGV 239 (305)
Q Consensus 174 ~~l~v~nl----p~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~~~ 239 (305)
.+|||+|| ++.+++++|+++|+ .||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 99999999999999 99999999999999999999999999996 333 888988 78999
Q ss_pred eecceeeEEccCCC
Q 021958 240 FCSTRPMRIGPATN 253 (305)
Q Consensus 240 ~~~g~~l~v~~~~~ 253 (305)
.|+||.|+|.+-+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998554
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-18 Score=115.41 Aligned_cols=76 Identities=26% Similarity=0.492 Sum_probs=70.9
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
++|||+|||.++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|.+|++.++ ..+ .|+.+++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999888 777 6788888876
No 251
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.8e-17 Score=113.93 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
.+.-|||+||+..+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+ .++.|++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 356899999999999999999999999999999865 579999999999999999999999999 678888887
Q ss_pred c
Q 021958 160 A 160 (305)
Q Consensus 160 ~ 160 (305)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 6
No 252
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1.6e-17 Score=126.53 Aligned_cols=86 Identities=22% Similarity=0.456 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
......++|||+|||.++|+++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 119 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGREL 119 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999988899999999999999999999999999999 67899
Q ss_pred eeeccCCC
Q 021958 156 RLNWASFG 163 (305)
Q Consensus 156 ~v~~~~~~ 163 (305)
+|.|+...
T Consensus 120 ~V~~a~~~ 127 (135)
T 2lea_A 120 RVQMARYG 127 (135)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998754
No 253
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7e-18 Score=125.90 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCe----eEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPST----KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i----~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
....+|||+|||+++++++|+++|+ .||.| .+|+|+.|. +|+++|||||+|.+.++|.+|++. |+..|+||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3468999999999999999999999 99875 689999984 899999999999999999999986 9999999999
Q ss_pred EEccCCCC
Q 021958 247 RIGPATNK 254 (305)
Q Consensus 247 ~v~~~~~~ 254 (305)
+|..++.+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887643
No 254
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=116.78 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCcccCHHHHh----HhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 79 GEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
...++|||+|||.++++++|+ ++|++||.|.++++..++.+ +|||||+|.+.++|.+|++.|||..+ .++.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSKK 81 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 456899999999999999999 99999999999999998754 88999999999999999999999999 6799
Q ss_pred eeeeccCCC
Q 021958 155 FRLNWASFG 163 (305)
Q Consensus 155 i~v~~~~~~ 163 (305)
|+|.++...
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999999754
No 255
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=131.72 Aligned_cols=86 Identities=30% Similarity=0.426 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+||+.++++++|+++|+ .||.|.+|.|..+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 335678999999999999999999999 99999999999998 8999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 021958 249 GPATNKKT 256 (305)
Q Consensus 249 ~~~~~~~~ 256 (305)
.|+.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99876543
No 256
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=117.83 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||+++|+++|+++|+.||.+ +++++.++ +++++|||||+|.+.++|++|+ .+++..| .++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEEE
Confidence 3556899999999999999999999999955 99999998 8999999999999999999999 5799888 6788998
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 8877543
No 257
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5.4e-17 Score=127.03 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..| .++.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.|+...
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 999754
No 258
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=9.6e-18 Score=121.62 Aligned_cols=82 Identities=30% Similarity=0.612 Sum_probs=75.9
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+||+.++++++|+++|+ .||.|.++++..+. +|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 458999999999999999999999 99999999999998 99999999999999999999998 999999999999998
Q ss_pred CCCCCC
Q 021958 252 TNKKTV 257 (305)
Q Consensus 252 ~~~~~~ 257 (305)
..+...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876544
No 259
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=122.12 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++. ++..| .++.|+|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999987 99888 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++..+..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99986543
No 260
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.2e-17 Score=115.50 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
..++|||+|||.++++++|+++|+ +| .|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 468999999999999999999999 99 99999884 55999999999999999999999999999999999998
Q ss_pred CCCC
Q 021958 252 TNKK 255 (305)
Q Consensus 252 ~~~~ 255 (305)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 261
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=119.72 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEE-eeCCCCCccceEEEEEcCHHHHHHHHHHhC--CCCCCCCCcc
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVI-RNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~~~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~~~~~~ 154 (305)
...++|||+|||.++|+++|+++|+.||. |.++.+. .++.+++++|||||+|.+.++|.+|++.|+ +..+ .++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCe
Confidence 45689999999999999999999999998 9999998 788888999999999999999999999996 4777 6789
Q ss_pred eeeeccCCCC
Q 021958 155 FRLNWASFGA 164 (305)
Q Consensus 155 i~v~~~~~~~ 164 (305)
|+|.|+....
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998653
No 262
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=121.18 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCCceEEE--cCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-----
Q 021958 169 DDTPDHTIFV--GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC----- 241 (305)
Q Consensus 169 ~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----- 241 (305)
...++++||| +||++++++++|+++|+ +||.|.+|.+..+ +|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 3456789999 77999999999999999 9999999887532 78999999999999999999999998
Q ss_pred cceeeEEccCCCCCC
Q 021958 242 STRPMRIGPATNKKT 256 (305)
Q Consensus 242 ~g~~l~v~~~~~~~~ 256 (305)
.|+.|.|.|++....
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 799999999876443
No 263
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=6.3e-17 Score=128.72 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=88.2
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceec---ceee
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS---TRPM 246 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l 246 (305)
..++|||+|||.++++++|+++|+ .||.|.+++++.+..++ .++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 368999999999999999999999 99999999999998776 89999999999999999999999998875 6888
Q ss_pred EEccCCCCCCCCCCCCCCCcceEEeCCcc----hhhhHHHHhhccc
Q 021958 247 RIGPATNKKTVSGQQQYPKGTFLVVGTGF----CLQIKFKFKYFIG 288 (305)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~g 288 (305)
.+.++....... .....+++++.. ..++.+.+..|+.
T Consensus 81 ~~~~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 121 (175)
T 3nmr_A 81 QMKPADSEKNNA-----VEDRKLFIGMISKKCTENDIRVMFSSFGQ 121 (175)
T ss_dssp EEEECGGGCCSC-----GGGSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred EEcccccccccc-----CCCCeEEEcCCCCcCCHHHHHHHHHhCCC
Confidence 888877654431 233455555432 2334555555544
No 264
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-17 Score=119.07 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCcccCHHHHh---HhhhhcCCcEEEEEEeeCCCC---CccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 79 GEIRTLWIGDLQYWMDETYLN---TCFAHTGEVVAVKVIRNKQTG---QIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
...++|||+|||.++++++|+ ++|++||.|.++.+..++.++ +++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--DG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--TT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--CC
Confidence 456899999999999999999 999999999999999887644 5669999999999999999999999999 67
Q ss_pred cceeeeccCCCC
Q 021958 153 QNFRLNWASFGA 164 (305)
Q Consensus 153 ~~i~v~~~~~~~ 164 (305)
+.|+|.|+..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998664
No 265
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=122.87 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCc-EEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
.....++|||+|||.++|+++|+++|+.||.| .+++++.++ +++++|||||+|.+.++|.+|++. ++..| .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 34567899999999999999999999999999 889999998 899999999999999999999977 99888 67999
Q ss_pred eeeccCC
Q 021958 156 RLNWASF 162 (305)
Q Consensus 156 ~v~~~~~ 162 (305)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9988864
No 266
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=116.97 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEE-EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~-i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
...++|||+|||.++++++|+++|+ .||.|.+++ +..+..++ .|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4468999999999999999999999 999999994 77775443 39999999999999999999999999999999
Q ss_pred cCCCCC
Q 021958 250 PATNKK 255 (305)
Q Consensus 250 ~~~~~~ 255 (305)
|++++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999874
No 267
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=115.07 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|+.| .|.+++++++ .+|+++|||||+|.+.++|.+|++ ++|..+ .++.|+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEE
Confidence 3567899999999999999999999999 8999999999 689999999999999999999999 999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998754
No 268
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=117.58 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+|||. ++|+++|+++|+.||.|.++++++++ |||||+|++.++|.+|++.|++......|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 99999999999999999999998653 699999999999999999998765333789999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999854
No 269
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=116.62 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
..+++|||+|||.++|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++.+++..+...|+.|+|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45689999999999999999999999999999998753 579999999999999999999988743378999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99754
No 270
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.6e-17 Score=122.51 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCC---cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
....++|||+|||+++|+++|+++|+.||. |.+++++.++. |+++|||||+|.+.++|++|++ +++..| .++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeE
Confidence 456789999999999999999999999999 89999999986 9999999999999999999998 899998 6788
Q ss_pred eeeeccC
Q 021958 155 FRLNWAS 161 (305)
Q Consensus 155 i~v~~~~ 161 (305)
|+|.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 9988775
No 271
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=120.15 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCccc------CHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 021958 77 QPGEIRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 150 (305)
.....++|||+|||..+ |+++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 44557899999999999 789999999999999999988 35799999999999999999999999999999
Q ss_pred CCc-ceeeeccCC
Q 021958 151 GEQ-NFRLNWASF 162 (305)
Q Consensus 151 ~~~-~i~v~~~~~ 162 (305)
.|+ .|+|.++..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 567 899998864
No 272
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=8.2e-18 Score=129.72 Aligned_cols=86 Identities=27% Similarity=0.429 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEE------EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA------KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i------~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 243 (305)
..++++|||+||+.++++++|+++|+ .||.|.++ .+.. ..+|.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999 99998874 1111 1368889999999999999999999999999999
Q ss_pred eeeEEccCCCCCCC
Q 021958 244 RPMRIGPATNKKTV 257 (305)
Q Consensus 244 ~~l~v~~~~~~~~~ 257 (305)
+.|+|.|++.....
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999876544
No 273
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.9e-17 Score=122.78 Aligned_cols=82 Identities=18% Similarity=0.419 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+||+.++|+++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|+ .|+|..+ .++.|+|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999 8999999 67999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++...
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98754
No 274
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=120.17 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCC--CCCCCCCcce
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQNF 155 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~~~~~~i 155 (305)
....++|||+|||+++|+++|+++|+.||.|.+++++++ +|||||+|++.++|.+|++.+++ ..+ .|+.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeEE
Confidence 345689999999999999999999999999999999875 58999999999999999998875 455 78999
Q ss_pred eeeccCCCCCC
Q 021958 156 RLNWASFGAGE 166 (305)
Q Consensus 156 ~v~~~~~~~~~ 166 (305)
+|.++..+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999866443
No 275
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=123.72 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ ++|..| .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 4566899999999999999999999999999887777777789999999999999999999998 999999 6788999
Q ss_pred eccC
Q 021958 158 NWAS 161 (305)
Q Consensus 158 ~~~~ 161 (305)
.++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8875
No 276
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-17 Score=120.86 Aligned_cols=80 Identities=14% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCcccCHHHHh----HhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 79 GEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
...++|||+||+..+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCE
Confidence 346799999999999999876 6999999999987743 578999999999999999999999999999 6789
Q ss_pred eeeeccCCC
Q 021958 155 FRLNWASFG 163 (305)
Q Consensus 155 i~v~~~~~~ 163 (305)
|+|.|+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999999754
No 277
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.2e-17 Score=124.95 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCee--EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTK--GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~--~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
...++|||+|||+++++++|+++|+ .| .|. +|+|+.|.. |+++|||||+|.+.++|.+|++. ++..|+||.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 4568899999999999999999999 99 566 899999975 99999999999999999999985 779999999999
Q ss_pred ccCCCC
Q 021958 249 GPATNK 254 (305)
Q Consensus 249 ~~~~~~ 254 (305)
.+++.+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987654
No 278
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=9.8e-17 Score=125.78 Aligned_cols=84 Identities=23% Similarity=0.470 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|+.||.|.++++..++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 144 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRV 144 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 999754
No 279
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=116.48 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCcc-cCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+|||.+ +++++|+++|++||.|.++++++ ++|||||+|.+.++|.+|++.|++..+...|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 36899999999999999999887654333789999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|+++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997653
No 280
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.6e-17 Score=125.06 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCC---cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
....++|||+|||+++|+++|+++|+.||. |.++++++|+. |+++|||||+|.+.++|++|++ +++..| .++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEE
Confidence 456789999999999999999999999999 89999999986 9999999999999999999998 999999 6788
Q ss_pred eeeeccC
Q 021958 155 FRLNWAS 161 (305)
Q Consensus 155 i~v~~~~ 161 (305)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8888774
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=120.91 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++|+++|+++|+.||.|.+ .++.++.+++++|||||+|.+.++|.+|++ |+|..+ .++.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEE
Confidence 3456789999999999999999999999999887 667777788999999999999999999998 999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++..+
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9998754
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=118.10 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=68.7
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecc--eeeEEcc
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY-GFVRFGDESEQLRAMTEMNGVFCST--RPMRIGP 250 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 250 (305)
..|||+||++.+++++|+++|+ +||.|.+|+|... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3467999999999999999999 9999999998642 376 9999999999999999999999987 6999999
Q ss_pred CCCCCCC
Q 021958 251 ATNKKTV 257 (305)
Q Consensus 251 ~~~~~~~ 257 (305)
++.+...
T Consensus 99 Ak~~~l~ 105 (124)
T 2e5i_A 99 ARPTRLN 105 (124)
T ss_dssp CSCSCCC
T ss_pred ecCCcce
Confidence 9987643
No 283
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=113.90 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=65.3
Q ss_pred CceEEEcCCCccc------CHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc-
Q 021958 81 IRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ- 153 (305)
Q Consensus 81 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~- 153 (305)
.++|||+|||..+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCce
Confidence 3689999999999 679999999999999999987 35789999999999999999999999999999 455
Q ss_pred ceee
Q 021958 154 NFRL 157 (305)
Q Consensus 154 ~i~v 157 (305)
.++|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 5654
No 284
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.6e-17 Score=135.80 Aligned_cols=81 Identities=21% Similarity=0.461 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcC--CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
...++|||+||+.++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.|++..| .++.|+
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~ 143 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPV 143 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeE
Confidence 3677999999999999999999999999 999999999999999999999999999999999999999999 678899
Q ss_pred eeccC
Q 021958 157 LNWAS 161 (305)
Q Consensus 157 v~~~~ 161 (305)
|.++.
T Consensus 144 V~~a~ 148 (229)
T 3q2s_C 144 VTPVN 148 (229)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98875
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=120.28 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCC---cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
.....++|||+|||+++|+++|+++|+.||. |.+++++.++. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4467789999999999999999999999988 89999999986 9999999999999999999998 899888 678
Q ss_pred ceeeeccC
Q 021958 154 NFRLNWAS 161 (305)
Q Consensus 154 ~i~v~~~~ 161 (305)
.|+|.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 88888775
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=114.93 Aligned_cols=83 Identities=20% Similarity=0.429 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|.+|++.|+|..| .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 345678999999999999999999999773 778888888899999999999999999999999999999 679999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998653
No 287
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=115.87 Aligned_cols=83 Identities=31% Similarity=0.456 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 44567999999999999999999999999976 56666 5789999999999999999999999999999 679999
Q ss_pred eeccCCCCC
Q 021958 157 LNWASFGAG 165 (305)
Q Consensus 157 v~~~~~~~~ 165 (305)
|.++.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999986643
No 288
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=110.50 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 3567899999999999999999999999999999987 46999999999999999999999998 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99986543
No 289
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.2e-16 Score=114.58 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCc-----CCCHHHHHHHHhhcCCCeeEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceecce
Q 021958 171 TPDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (305)
Q Consensus 171 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~~G~i~~i~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 244 (305)
.++++|+|.|+-. +-++++|+++|+ +||.|.++.|..+..+ +.++|||||+|.+.++|.+|++.|||+.++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999963 236899999999 9999999999998643 68899999999999999999999999999999
Q ss_pred eeEEccCCC
Q 021958 245 PMRIGPATN 253 (305)
Q Consensus 245 ~l~v~~~~~ 253 (305)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 290
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2.5e-17 Score=112.37 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=68.7
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeecc
Q 021958 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (305)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (305)
+|||+|||.++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|.+|++. ++..+ .|+.+++.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEEC
Confidence 699999999999999999999999999999999988899999999999999999999975 88888 5677777654
No 291
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=9.8e-17 Score=117.38 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 44567899999999999999999999999999999987 57999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9998754
No 292
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1.3e-16 Score=126.04 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||..+++++|+++|+.||.|..|.+..++.+|.++|||||+|.+.++|.+|++.|+|..| .++.|+|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999 6799999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
.|+....
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9987653
No 293
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=3.4e-16 Score=134.39 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCcCCCHHHHH----HHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecce
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 244 (305)
+..++++|||+||+.++++++|+ ++|+ .||.|.+|++.. +++++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 44668999999999999999976 8998 999999998875 678899999999999999999999999999999
Q ss_pred eeEEccCCCCC
Q 021958 245 PMRIGPATNKK 255 (305)
Q Consensus 245 ~l~v~~~~~~~ 255 (305)
.|+|.|++.+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997755
No 294
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=112.61 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=70.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+.++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345578999999999999999999999999986 666654 5789999999999999999999999999 678899
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++..+
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 295
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=117.78 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
.+.++|||+|||+++|+++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|.+|+ .+++..| .++.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 456899999999999999999999999 899999999975 999999999999999999999 7899998 67888887
Q ss_pred ccC
Q 021958 159 WAS 161 (305)
Q Consensus 159 ~~~ 161 (305)
.+.
T Consensus 89 ~a~ 91 (109)
T 2dnn_A 89 PAT 91 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 664
No 296
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=113.01 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceEE
Confidence 3456789999999999999999999999999999998754 57999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 9999765
No 297
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=112.11 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--ecceeeE
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRPMR 247 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~ 247 (305)
.....+|||+|||+++++++|+++|+ +||.|.+|+|+.+ ++|||||+|++.++|.+ +++.. ++|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 35678999999999999999999999 9999999999875 59999999999999984 45555 5699999
Q ss_pred EccCCCCCC
Q 021958 248 IGPATNKKT 256 (305)
Q Consensus 248 v~~~~~~~~ 256 (305)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999987654
No 298
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=3.4e-16 Score=121.36 Aligned_cols=83 Identities=12% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
+....+|||+||++.+|+++|+++|++||.|.+|++..+ .++|||||+|.+.++|++|++.|+|..|.+.++.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 345678999999999999999999999999999998653 2578999999999999999999999999766799999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
+|++.+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998763
No 299
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=114.78 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC---cce
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE---QNF 155 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~---~~i 155 (305)
...++|||+|||.++|+++|+++|++||.|.++.+..+ |||||+|.+.++|++|++.|||..+.+.. +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999876 79999999999999999999999994311 899
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987543
No 300
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-16 Score=111.75 Aligned_cols=79 Identities=19% Similarity=0.439 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|+|..+.+.++.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999988754 679999999999999999999999995338999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
|+..+
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99754
No 301
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=2e-17 Score=130.71 Aligned_cols=81 Identities=25% Similarity=0.424 Sum_probs=75.1
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
.+++|||+|||.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|++. +..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 358999999999999999999999 999999999999988999999999999999999999984 67899999999998
Q ss_pred CCCC
Q 021958 252 TNKK 255 (305)
Q Consensus 252 ~~~~ 255 (305)
..+.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 302
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.3e-16 Score=113.07 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+||+. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|+|..+ .|+.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 34568999999998 99999999999999999999883 68999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9988743
No 303
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.4e-16 Score=127.42 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHh--CCCCCCCCCcceeeeccCCCCCCCC-----CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEE
Q 021958 132 SRAGAERVLQTF--NGTPMPNGEQNFRLNWASFGAGEKR-----DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (305)
Q Consensus 132 ~~~~a~~a~~~l--~g~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i 204 (305)
+.+.+..|++.. ....+.+.+..++ .......... .....++|||+|||.++++++|+++|+ .||.|.+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vr--R~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v 139 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIR--RSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNI 139 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEE--ECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEE--ecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEE
Confidence 667777888765 3444433333333 3321111111 122358999999999999999999999 99999999
Q ss_pred EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCC
Q 021958 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (305)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 256 (305)
++..+. ++.++|||||+|.+.++|.+|+..++ ..++|+.|+|.+++.-..
T Consensus 140 ~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 140 QMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp EEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC--
T ss_pred EEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHH
Confidence 999986 58999999999999999999998765 589999999999876543
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.2e-16 Score=118.34 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee-----e
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP-----M 246 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-----l 246 (305)
..++|||+||+.++++++|+++|+ .||.|.+|.|+.+ |||||+|.+.++|.+|++.|||..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 468999999999999999999999 9999999999755 89999999999999999999999999998 7
Q ss_pred EEccCCCCCCC
Q 021958 247 RIGPATNKKTV 257 (305)
Q Consensus 247 ~v~~~~~~~~~ 257 (305)
+|..+.++...
T Consensus 87 ~v~~~~~~~~~ 97 (115)
T 3beg_B 87 RVKVDGPRSPS 97 (115)
T ss_dssp EEEECC----C
T ss_pred EeccCCCCCCC
Confidence 77776654433
No 305
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=115.10 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=69.0
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+||+.++++++|+++|++||.|.++++. +++|||||+|.+.++|.+|++.|+|..+ .++.|+|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEe
Confidence 45899999999999999999999999999999987 3568999999999999999999999999 679999999
Q ss_pred cCC
Q 021958 160 ASF 162 (305)
Q Consensus 160 ~~~ 162 (305)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 306
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=109.83 Aligned_cols=77 Identities=26% Similarity=0.462 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCcce
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNF 155 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~~~~~~i 155 (305)
.....++|||+|||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| +|..+ .++.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 3456789999999999999999999999999999999864 589999999999999999988 99888 67889
Q ss_pred eeeccC
Q 021958 156 RLNWAS 161 (305)
Q Consensus 156 ~v~~~~ 161 (305)
++.|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 998874
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=118.16 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 34568999999999999999999999999984333322223788999999999999999999999999999 6899999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
.|+....
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998653
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=5.2e-17 Score=129.45 Aligned_cols=120 Identities=15% Similarity=0.230 Sum_probs=90.6
Q ss_pred CCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
.....++|||+|||.++++++|+++|+ .||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|+|..++|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 445679999999999999999999999 9998877 33444457889999999999999999999 59999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeCCcchhhhHHHHhhccceeeEEEE
Q 021958 249 GPATNKKTVSGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLIFIII 295 (305)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 295 (305)
.++..+.... ......+++++.......+.++++|..+..|..
T Consensus 86 ~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~ 128 (175)
T 1fje_B 86 EKPKGRDSKK----VRAARTLLAKNLSFNITEDELKEVFEDALEIRL 128 (175)
T ss_dssp ECCCCSSCST----TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE
T ss_pred ecCCCccccc----cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE
Confidence 9998765432 234456666654333334445555544444443
No 309
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=114.53 Aligned_cols=80 Identities=18% Similarity=0.445 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+||+.++++++|+++|+.||.|.++++..+ +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 345689999999999999999999999999999999876 57999999999999999999999999 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99986543
No 310
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=3.8e-16 Score=132.65 Aligned_cols=80 Identities=30% Similarity=0.544 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 167 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
.......++|||+|||.++|+++|+++|+ .||.|.+|.+..+ +|||||+|.+.++|.+|+..|+|..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 34456678999999999999999999999 9999999999644 7999999999999999999999999999999
Q ss_pred EEccCCC
Q 021958 247 RIGPATN 253 (305)
Q Consensus 247 ~v~~~~~ 253 (305)
+|.|+.+
T Consensus 89 ~v~~a~~ 95 (261)
T 3sde_A 89 RIRFATH 95 (261)
T ss_dssp EEEECCC
T ss_pred Eeeeccc
Confidence 9999864
No 311
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.4e-16 Score=128.74 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCceEEEcCCC-cCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 172 PDHTIFVGDLA-ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 172 ~~~~l~v~nlp-~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
.+++|||+||+ ..+++++|+++|+ .||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 8999999999999 99999999998653 89999999999999999999999999999999999
Q ss_pred CCCC
Q 021958 251 ATNK 254 (305)
Q Consensus 251 ~~~~ 254 (305)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 312
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=5.7e-16 Score=128.94 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCCCceEEEcCCCc-CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceee
Q 021958 168 RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (305)
Q Consensus 168 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 246 (305)
....++++|||+|||. ++++++|+++|+ .||.|.+|++..+. +|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3345679999999999 999999999999 99999999998875 7899999999999999999999999999999
Q ss_pred EEccCCCC
Q 021958 247 RIGPATNK 254 (305)
Q Consensus 247 ~v~~~~~~ 254 (305)
+|.|++.+
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99999865
No 313
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.3e-16 Score=116.72 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcC-CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++|++.|||..+ .++.|+|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF--RGSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 3468999999999999999999999999 899988753 35789999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 988643
No 314
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.8e-16 Score=116.55 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEc
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 249 (305)
....++|||+|+ ++++++|+++|+ .||.|.+|.+. .++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999996 799999999999 99999999985 458999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 021958 250 PATNKKTV 257 (305)
Q Consensus 250 ~~~~~~~~ 257 (305)
|++.+...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99876543
No 315
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=2.7e-16 Score=130.01 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=75.8
Q ss_pred CCcceeeeccCCCCCCCCCCCCCceEEEcCCCcCC---------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEE
Q 021958 151 GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADV---------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV 221 (305)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV 221 (305)
.|+.....+..............++|||+||+.++ ++++|+++|+ +||.|++|+|+.+ +|||||
T Consensus 112 fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~~------kG~AFV 184 (240)
T 3u1l_A 112 FGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVES------KNCGFV 184 (240)
T ss_dssp TSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEGG------GTEEEE
T ss_pred ccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEECC------CCEEEE
Confidence 34443333333322222345568999999999998 7999999999 9999999999854 899999
Q ss_pred EeCCHHHHHHHHHHhCCcee------------cceeeEEccCCCCCCCC
Q 021958 222 RFGDESEQLRAMTEMNGVFC------------STRPMRIGPATNKKTVS 258 (305)
Q Consensus 222 ~f~~~~~A~~a~~~l~~~~~------------~g~~l~v~~~~~~~~~~ 258 (305)
+|.+.++|+.|++.|+|..| .|+.|.|.|++.+....
T Consensus 185 ~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 185 KFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp EESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred EeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 99999999999999999999 89999999999876553
No 316
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.4e-16 Score=110.67 Aligned_cols=71 Identities=18% Similarity=0.435 Sum_probs=66.2
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~----G-------~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
..++|||+|||.++++++|+++|+ .| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 468999999999999999999999 99 8 8999998755 899999999999999999 999999
Q ss_pred ecceeeEEcc
Q 021958 241 CSTRPMRIGP 250 (305)
Q Consensus 241 ~~g~~l~v~~ 250 (305)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=114.88 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
...++|||+||+.++++++|+++|+ +||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4568999999999999999999999 999999 888887766 7999999999999999999999983 36666666
Q ss_pred EccCC
Q 021958 248 IGPAT 252 (305)
Q Consensus 248 v~~~~ 252 (305)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 318
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.4e-16 Score=114.26 Aligned_cols=81 Identities=21% Similarity=0.419 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCcccCHHHHh----HhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 78 PGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
....++|||+|||.++++++|+ ++|++||.|.++.+.+ ++.++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 3456899999999999999999 9999999999998873 478889999999999999999999999999 679
Q ss_pred ceeeeccCCC
Q 021958 154 NFRLNWASFG 163 (305)
Q Consensus 154 ~i~v~~~~~~ 163 (305)
.+++.|+...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999999764
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=124.09 Aligned_cols=83 Identities=17% Similarity=0.321 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+||+..+++++|+++|+.||.|.+|.+..++ ++.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 678999
Q ss_pred eeccCC
Q 021958 157 LNWASF 162 (305)
Q Consensus 157 v~~~~~ 162 (305)
|.|+..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 998864
No 320
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6.9e-16 Score=115.28 Aligned_cols=84 Identities=12% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccce-EEEEEcCHHHHHHHHHHhCCCCCCCCCcce
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (305)
.+.....|||+||+..+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++.|||..|.++.+.+
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 33556789999999999999999999999999999887642 577 999999999999999999999997666899
Q ss_pred eeeccCCCCC
Q 021958 156 RLNWASFGAG 165 (305)
Q Consensus 156 ~v~~~~~~~~ 165 (305)
+|+|++....
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999986543
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=1.1e-15 Score=110.90 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|++||.|.++++.+ +||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 34568999999999999999999999999999998863 4999999999999999999999999 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.++.....
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99986543
No 322
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-15 Score=108.90 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=70.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhc--CCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
.....++|||+|||.++|+++|+++|++| |.|.++++. +|||||+|.+.++|.+|++.|+|..+ .++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcE
Confidence 34567899999999999999999999999 889888764 46999999999999999999999999 6799
Q ss_pred eeeeccCCCCC
Q 021958 155 FRLNWASFGAG 165 (305)
Q Consensus 155 i~v~~~~~~~~ 165 (305)
|+|.++.....
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 323
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1e-16 Score=116.09 Aligned_cols=80 Identities=28% Similarity=0.493 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++ ++..+ .|+.+.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEE
Confidence 456899999999999999999999999999999999998 89999999999999999999997 77777 67888888
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++...
T Consensus 82 ~a~~~ 86 (102)
T 2xs2_A 82 PAIRK 86 (102)
T ss_dssp EEEEC
T ss_pred ECCcC
Confidence 77644
No 324
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=108.28 Aligned_cols=77 Identities=13% Similarity=0.283 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++++++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 76 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMHV 76 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEEE
Confidence 45678999999999999999999999999999999874 3999999999999999999999999 6799999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
.++....
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9997653
No 325
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=110.81 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEcc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 250 (305)
...++|||+|||.++++++|+++|+ .||.|.++++..+ ++|||||+|.+.++|++|+. .+..++|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 3468999999999999999999999 9999999999765 58999999999999986532 13456999999999
Q ss_pred CCCCCCC
Q 021958 251 ATNKKTV 257 (305)
Q Consensus 251 ~~~~~~~ 257 (305)
++++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9887655
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=118.07 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCc----EEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEV----VAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+|++. ++..| .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 556899999999999999999999999875 689999985 899999999999999999999976 88888 5677
Q ss_pred eeeeccC
Q 021958 155 FRLNWAS 161 (305)
Q Consensus 155 i~v~~~~ 161 (305)
|+|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 7776553
No 327
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.6e-16 Score=117.66 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcE--EEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
.....++|||+|||+++|+++|+++|+.| .|. +|+|+.|+. |+++|||||+|.+.++|++|++. ++..| .++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEE
Confidence 34567889999999999999999999999 566 899999986 99999999999999999999975 77777 6788
Q ss_pred eeeeccC
Q 021958 155 FRLNWAS 161 (305)
Q Consensus 155 i~v~~~~ 161 (305)
|+|..+.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 8887764
No 328
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=124.26 Aligned_cols=85 Identities=15% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEE--------EEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
....++|||+|||.++++++|+++|++||.|.+ +++..++.+++++|||||+|.+.++|.+|++.|+|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 356789999999999999999999999999998 89999988899999999999999999999999999999
Q ss_pred CCCcceeeeccCCCC
Q 021958 150 NGEQNFRLNWASFGA 164 (305)
Q Consensus 150 ~~~~~i~v~~~~~~~ 164 (305)
.++.|+|.++..+.
T Consensus 83 -~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 -SGNPIKVSFATRRA 96 (116)
Confidence 67899999987653
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=112.40 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 44567899999999999999999999999987665 24689999999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.++..+
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 9998754
No 330
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.1e-16 Score=121.93 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||+++|+++|+++|+.|| +.+|+|+.|+. ++++|||||+|.+.++|++|+ .+++..| .++.|+|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEEE
Confidence 45568999999999999999999999999 66999999975 999999999999999999999 7899988 6788888
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
..+...
T Consensus 118 ~~a~~~ 123 (139)
T 2hgn_A 118 FLNSTT 123 (139)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 877654
No 331
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=108.94 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEE-EEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+|||.++++++|+++|+.||.|.++ .++.++.++ .|||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 456899999999999999999999999999999 477776543 399999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998765
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=2e-15 Score=110.89 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCcc-cCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
...++|||+||+.+ +++++|+++|++||.|.++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 44589999999999 999999999999999999988 468999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 95 ~~a~~~ 100 (110)
T 1wf1_A 95 NMAGEP 100 (110)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998754
No 333
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=110.10 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCC-cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCC-CCCCCCCccee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-TPMPNGEQNFR 156 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~~~~~~i~ 156 (305)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.|+| ..+ .++.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEE
Confidence 45689999999999999999999999999 6655552 468999999999999999999999 888 679999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.|+..+.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998653
No 334
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.3e-15 Score=110.01 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccce-EEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
.....|||+||++.+|+++|+++|++||.|.+|++.. + .|| |||+|.+.++|.+|++.|+|..|.+.++.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3445688999999999999999999999999999865 2 276 99999999999999999999999776689999
Q ss_pred eccCCCC
Q 021958 158 NWASFGA 164 (305)
Q Consensus 158 ~~~~~~~ 164 (305)
+++....
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998653
No 335
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=107.06 Aligned_cols=76 Identities=18% Similarity=0.444 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|||.++|+++|+++|++||.|.++++.+ +||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999874 3999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999765
No 336
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.8e-16 Score=109.63 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCc-ccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 78 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
....++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 35678999999998 99999999999999999999884 57999999999999999999999999 578888
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
|.++....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 88887543
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=107.04 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+|| ++|+++|+++|++||.|.++.+. +++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 346689999996 89999999999999999999884 4678999999999999999999999999 6799999
Q ss_pred eccCCCCC
Q 021958 158 NWASFGAG 165 (305)
Q Consensus 158 ~~~~~~~~ 165 (305)
.|+.....
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99986543
No 338
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.9e-16 Score=113.46 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++.|||..+ .++.|+|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 467999999999999999999999999999998864 467999999999999999999999999 678999999
Q ss_pred cCCC
Q 021958 160 ASFG 163 (305)
Q Consensus 160 ~~~~ 163 (305)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 339
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=1.8e-15 Score=117.55 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|||.++|+++|+++|+.||.|.++++.++ ++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 3456789999999999999999999999999999999876 578999999999999999999999998 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.|+..+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 340
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4e-16 Score=114.51 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=68.6
Q ss_pred ceEEEcCC----CcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcC----HHH----HHHHHH--HhCCCC
Q 021958 82 RTLWIGDL----QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS----RAG----AERVLQ--TFNGTP 147 (305)
Q Consensus 82 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 147 (305)
..|||+|| ++.+++++|+++|+.||.|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred CCCCCcceeeeccC
Q 021958 148 MPNGEQNFRLNWAS 161 (305)
Q Consensus 148 ~~~~~~~i~v~~~~ 161 (305)
| .|+.|+|....
T Consensus 83 I--~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 I--MGFKFEVILNK 94 (136)
T ss_dssp E--TTEEEEEEECC
T ss_pred e--cCcEEEEEECc
Confidence 9 56777777554
No 341
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=111.90 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCceEEE--cCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC---CCCCc
Q 021958 79 GEIRTLWI--GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM---PNGEQ 153 (305)
Q Consensus 79 ~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~~~~~ 153 (305)
...++||| |||+.++++++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++.|||..+ .+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 44678999 77999999999999999999999988753 368999999999999999999999976 34578
Q ss_pred ceeeeccCCC
Q 021958 154 NFRLNWASFG 163 (305)
Q Consensus 154 ~i~v~~~~~~ 163 (305)
.+.+.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 8888887643
No 342
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=106.38 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ |+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEE
Confidence 456799999999999999999999999999987 55655555 99999999999999998 999999 67899998
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++..+
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 88654
No 343
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=9.6e-16 Score=124.61 Aligned_cols=76 Identities=24% Similarity=0.396 Sum_probs=71.8
Q ss_pred CceEEEcCCCc-CCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccC
Q 021958 173 DHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (305)
Q Consensus 173 ~~~l~v~nlp~-~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 251 (305)
+++|||+|||. ++++++|+++|+ .||.|.+|++..+. +|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 58999999999 999999999999 99999999998774 789999999999999999999999999999999998
Q ss_pred CCC
Q 021958 252 TNK 254 (305)
Q Consensus 252 ~~~ 254 (305)
+.+
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=6.6e-16 Score=108.80 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
....+|||+|||.++|+++|+++|++||.|.+++++++ ++|||||+|.+.++|.+ +++..+.+.++.+++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45689999999999999999999999999999998864 78999999999999983 5677776678999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++..+
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98754
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-15 Score=101.85 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=63.3
Q ss_pred ceEEEcCCCcccCHHH----HhHhhhhcC-CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 82 RTLWIGDLQYWMDETY----LNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
+.|||+|||.++++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr~i~ 77 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGNRII 77 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCceEE
Confidence 3499999999999988 558999995 99888 23 8999999999999999999999999 789999
Q ss_pred eeccCCCC
Q 021958 157 LNWASFGA 164 (305)
Q Consensus 157 v~~~~~~~ 164 (305)
++++....
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998663
No 346
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2.2e-15 Score=109.28 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=71.5
Q ss_pred CCCceEEEcCC--CcCCC--------HHHHHHHHhhcCCCeeEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCC
Q 021958 171 TPDHTIFVGDL--AADVT--------DYMLQETFRARYPSTKGAKVVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 171 ~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~~G~i~~i~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
.++++|.|.|+ +.++. ++||++.|+ +||.|.+|.|.++..+ +.++|+|||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 46789999998 43443 479999999 9999999999988654 36799999999999999999999999
Q ss_pred ceecceeeEEccCCC
Q 021958 239 VFCSTRPMRIGPATN 253 (305)
Q Consensus 239 ~~~~g~~l~v~~~~~ 253 (305)
+.++||.|+|.|+..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999764
No 347
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=3.3e-15 Score=118.43 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~----G-------~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
..++|||+|||.++++++|+++|+ .| | .|.++.+. .++|||||+|.+.++|.+|+ .|+|..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 358999999999999999999999 99 6 66666664 34899999999999999999 899999
Q ss_pred ecceeeEEccCCCCCCCCCCCCCCCcceEEeCCc----chhhhHHHHhhccc
Q 021958 241 CSTRPMRIGPATNKKTVSGQQQYPKGTFLVVGTG----FCLQIKFKFKYFIG 288 (305)
Q Consensus 241 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~g 288 (305)
++|+.|+|.++...... .....+++++. ...++.+.+..++.
T Consensus 75 ~~g~~i~v~~~~~~~~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 120 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL------PGAHKLFIGGLPNYLNDDQVKELLTSFGP 120 (172)
T ss_dssp ETTEECEEECCSSCCCC------TTTTCEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred ecCceeeecCCcccCCC------CCCCEEEEEcCCCcCCHHHHHHHHHhcCC
Confidence 99999999997765433 22344555542 22334556665543
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=107.41 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCcCC-----------CHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021958 169 DDTPDHTIFVGDLAADV-----------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 169 ~~~~~~~l~v~nlp~~~-----------~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
...++++|+|.||-... ++++|+++|+ +||.|.+|.| .+. .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 44568999999994332 2689999999 9999999966 553 379999999999999999999999
Q ss_pred CceecceeeEEccCCCCCCC
Q 021958 238 GVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 238 ~~~~~g~~l~v~~~~~~~~~ 257 (305)
|..|+|+.|+|.|+.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999886554
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.4e-15 Score=106.97 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 356899999999999999999999999 99999883 5789999999999999999999999999 67999999
Q ss_pred ccCCC
Q 021958 159 WASFG 163 (305)
Q Consensus 159 ~~~~~ 163 (305)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98754
No 350
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=2.6e-15 Score=111.04 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCceEEEcCCC--cCC---CHHHHHHHHhhcCCCeeEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021958 172 PDHTIFVGDLA--ADV---TDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 172 ~~~~l~v~nlp--~~~---~~~~l~~~f~~~~G~i~~i~i~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 242 (305)
++++|+|.|+= .++ .++||++.|+ +||.|.+|.|..+.. ++.++|++||+|.+.++|.+|++.|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 57899999983 222 3689999999 999999999998854 4567899999999999999999999999999
Q ss_pred ceeeEEccCCC
Q 021958 243 TRPMRIGPATN 253 (305)
Q Consensus 243 g~~l~v~~~~~ 253 (305)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 351
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=6.9e-15 Score=119.34 Aligned_cols=76 Identities=16% Similarity=0.407 Sum_probs=66.5
Q ss_pred CCceEEEcCCCcCCCHHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 172 ~~~~l~v~nlp~~~~~~~l~~~f~~~~----G-------~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
..++|||+|||.++++++|+++|+ .| | .|.++.+ +.++|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 368999999999999999999999 99 4 4555554 455899999999999999999 899999
Q ss_pred ecceeeEEccCCCCC
Q 021958 241 CSTRPMRIGPATNKK 255 (305)
Q Consensus 241 ~~g~~l~v~~~~~~~ 255 (305)
|+|+.|+|.+++...
T Consensus 75 ~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQ 89 (198)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred EcCceEEEeCCCCCC
Confidence 999999999987753
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=112.76 Aligned_cols=64 Identities=20% Similarity=0.383 Sum_probs=59.4
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCC---CCccceEEEEEcCHHHHHHHHHHh
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l 143 (305)
...++|||+|||.++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4568999999999999999999999999998 888887766 799999999999999999999988
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.9e-16 Score=119.69 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEE--------EEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV--------KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~--------~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
....++|||+||+.++|+++|+++|+.||.|.++ ++. .+++++|||||+|.+.++|.+|++.|+|..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~- 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL- 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-
Confidence 3456899999999999999999999999998764 332 3688999999999999999999999999999
Q ss_pred CCCcceeeeccCCC
Q 021958 150 NGEQNFRLNWASFG 163 (305)
Q Consensus 150 ~~~~~i~v~~~~~~ 163 (305)
.++.|+|.++...
T Consensus 118 -~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 -FGKPMVVQFARSA 130 (143)
T ss_dssp -TTEECEEEECCCS
T ss_pred -CCcEEEEEECCCC
Confidence 6799999999754
No 354
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=4.2e-15 Score=134.64 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceee
Q 021958 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (305)
....++|||+||+..+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..| .++.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999 6799999
Q ss_pred eccCCC
Q 021958 158 NWASFG 163 (305)
Q Consensus 158 ~~~~~~ 163 (305)
.++...
T Consensus 177 ~~a~~~ 182 (437)
T 3pgw_S 177 DVERGR 182 (437)
T ss_pred EEeCCC
Confidence 998754
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.2e-15 Score=110.61 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc----
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN---- 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~---- 154 (305)
...++|||+|||.++++++|+++|++||.|.++.++.+ |||||+|.+.++|++|++.|||..|. ++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC--CTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC--CcEeeeE
Confidence 35689999999999999999999999999999998765 79999999999999999999999995 454
Q ss_pred -eeeeccCC
Q 021958 155 -FRLNWASF 162 (305)
Q Consensus 155 -i~v~~~~~ 162 (305)
+++..+..
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 56655543
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=1.3e-15 Score=110.46 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=63.5
Q ss_pred EcCCCcCCCHHHHHHHH------------hhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 178 VGDLAADVTDYMLQETF------------RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 178 v~nlp~~~~~~~l~~~f------------~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
+.||+..+++++|++.| + +||.|.+|.|..+. +++++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 55677777777766665 8 99999999999886 5789999999999999999999999999999999
Q ss_pred eEEccC
Q 021958 246 MRIGPA 251 (305)
Q Consensus 246 l~v~~~ 251 (305)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=5.5e-15 Score=103.62 Aligned_cols=72 Identities=24% Similarity=0.548 Sum_probs=64.8
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhc----C-------CcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCC
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 147 (305)
...++|||+|||.++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|+|..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467899999999999999999999999 8 8999988654 689999999999999999 999999
Q ss_pred CCCCCcceeeec
Q 021958 148 MPNGEQNFRLNW 159 (305)
Q Consensus 148 ~~~~~~~i~v~~ 159 (305)
+ .++.++|.+
T Consensus 77 ~--~g~~l~V~r 86 (87)
T 2hzc_A 77 F--QGQSLKIRR 86 (87)
T ss_dssp E--TTEECEEEC
T ss_pred E--CCeEEEEeC
Confidence 9 678888764
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=9.3e-15 Score=108.97 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
.....++|||+|| ++|+++|+++|++||.|.++.+. .++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3456789999996 79999999999999999999885 4678999999999999999999999999 679999
Q ss_pred eeccCCC
Q 021958 157 LNWASFG 163 (305)
Q Consensus 157 v~~~~~~ 163 (305)
|.|+...
T Consensus 105 V~~a~~~ 111 (121)
T 2bz2_A 105 VNIARKQ 111 (121)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9999865
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=103.26 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeee
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (305)
...++|||+|||.++++++|+++|++||.|.++++..+ ++|||||+|.+.++|+++ ++..+.+.++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 45689999999999999999999999999999998754 678999999999999753 555565578999999
Q ss_pred ccCCCCC
Q 021958 159 WASFGAG 165 (305)
Q Consensus 159 ~~~~~~~ 165 (305)
++..+..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.4e-14 Score=103.76 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCc-----ccCHHHHhHhhhhcCCcEEEEEEeeCCC-CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 79 GEIRTLWIGDLQY-----WMDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 79 ~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
..+++|+|.|+-. +-++++|++.|++||.|.++.+.+++.+ ++++|||||+|.+.++|.+|++.|||+.+ .|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 3568999999962 3378999999999999999999998654 68999999999999999999999999999 67
Q ss_pred cceeeeccC
Q 021958 153 QNFRLNWAS 161 (305)
Q Consensus 153 ~~i~v~~~~ 161 (305)
+.|++.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999998875
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=4.2e-14 Score=114.21 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeec
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (305)
..++|||+|||.++|+++|+++|++||.|.++++.++. +++++|||||+|.+.++|.+|++.++ ..+ .|+.|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 35899999999999999999999999999999999986 58999999999999999999997654 466 678999988
Q ss_pred cCC
Q 021958 160 ASF 162 (305)
Q Consensus 160 ~~~ 162 (305)
+..
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=8.4e-14 Score=115.12 Aligned_cols=80 Identities=18% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCccc---------CHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 021958 78 PGEIRTLWIGDLQYWM---------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 148 (305)
....++|||+||+..+ ++++|+++|++||.|.+|+++. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 368999999999999999999999999
Q ss_pred CC----------CCcceeeeccCCC
Q 021958 149 PN----------GEQNFRLNWASFG 163 (305)
Q Consensus 149 ~~----------~~~~i~v~~~~~~ 163 (305)
.. .++.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 32 5789999999754
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-13 Score=95.66 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=59.3
Q ss_pred cCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCCCCC
Q 021958 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 257 (305)
.++++++|+++|+ +||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.|+.|+|.|++.+...
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5789999999999 99999999997 35699999999999999999998554 68999999999877644
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=2.4e-13 Score=118.31 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCCCCCceEEEcC--CCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---c
Q 021958 168 RDDTPDHTIFVGD--LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---S 242 (305)
Q Consensus 168 ~~~~~~~~l~v~n--lp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~ 242 (305)
....++.+|||+| |+..++|++|+++|+ +||.|++|.+.. +||||||+|++.++|++|++.|||..+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 3456789999999 578999999999999 999999887743 389999999999999999999999997 2
Q ss_pred ce--eeEEccCCCCCC-CCCCCCCCCcceEEeCCcchhhhHHHHhhccceee
Q 021958 243 TR--PMRIGPATNKKT-VSGQQQYPKGTFLVVGTGFCLQIKFKFKYFIGWLI 291 (305)
Q Consensus 243 g~--~l~v~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 291 (305)
|+ .|.|.|+..-.. .........+ ++...+-...+..+.|.+..-|..
T Consensus 86 g~~~~ly~~~~~~~~~~~~~~~~lp~G-l~~~p~fis~~Ee~~Ll~~i~w~~ 136 (345)
T 3tht_A 86 GQKITLYLNFVEKVQWKELRPQALPPG-LMVVEEIISSEEEKMLLESVDWTE 136 (345)
T ss_dssp SCEEECEEEECSSEEEEEEECCSCCTT-EEEETTCSCHHHHHHHHTTCC---
T ss_pred CCceEEEEEEeecccccccccccCCCc-eEEEcCcCCHHHHHHHHHhcccCC
Confidence 45 688888753211 1112233445 444444333344445555555653
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=9.8e-13 Score=96.64 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCccc-----------CHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCC
Q 021958 78 PGEIRTLWIGDLQYWM-----------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (305)
Q Consensus 78 ~~~~~~l~v~nLp~~~-----------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 146 (305)
...+++|+|.||-... ++++|+++|++||.|.++.| .++ .++|||||+|.+.++|.+|++.|+|.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3567899999994332 25899999999999999965 553 37999999999999999999999999
Q ss_pred CCCCCCcceeeeccCCC
Q 021958 147 PMPNGEQNFRLNWASFG 163 (305)
Q Consensus 147 ~~~~~~~~i~v~~~~~~ 163 (305)
.+ .++.|++.++...
T Consensus 88 ~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WF--GGRQITAQAWDGT 102 (112)
T ss_dssp EE--TTEECEEEECCSC
T ss_pred EE--CCcEEEEEEeCCC
Confidence 99 6899999998754
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=4.1e-13 Score=98.44 Aligned_cols=78 Identities=8% Similarity=0.075 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCc--C--------CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 171 TPDHTIFVGDLAA--D--------VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 171 ~~~~~l~v~nlp~--~--------~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
.++++|.|.|+=. + -.++||++.|+ +||.|.+|.|.++. .+|+|||+|.+.++|.+|++.|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578899998722 1 12368999999 99999999986552 48999999999999999999999999
Q ss_pred ecceeeEEccCCC
Q 021958 241 CSTRPMRIGPATN 253 (305)
Q Consensus 241 ~~g~~l~v~~~~~ 253 (305)
++||.|+|.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999764
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.3e-13 Score=99.74 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=63.0
Q ss_pred EcCCCcccCHHHHhHhh------------hhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 86 IGDLQYWMDETYLNTCF------------AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 86 v~nLp~~~t~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
+.||+..+++++|++.| ++||.|.++++.++. +++++|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 56777778888777666 999999999999886 478999999999999999999999999999 678
Q ss_pred ceeeecc
Q 021958 154 NFRLNWA 160 (305)
Q Consensus 154 ~i~v~~~ 160 (305)
.|++.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 8888875
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=7.8e-13 Score=95.79 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCceEEEcCC--CcccC--------HHHHhHhhhhcCCcEEEEEEeeCCC--CCccceEEEEEcCHHHHHHHHHHhCCCC
Q 021958 80 EIRTLWIGDL--QYWMD--------ETYLNTCFAHTGEVVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTP 147 (305)
Q Consensus 80 ~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~ 147 (305)
.++.|.|.|+ +..+. +++|++.|++||.|.++.|.+++.+ ++++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 34443 3689999999999999999988754 4689999999999999999999999999
Q ss_pred CCCCCcceeeeccC
Q 021958 148 MPNGEQNFRLNWAS 161 (305)
Q Consensus 148 ~~~~~~~i~v~~~~ 161 (305)
+ .|+.|++.+..
T Consensus 84 f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 F--ANRVVVTKYCD 95 (105)
T ss_dssp E--TTEECEEEEEC
T ss_pred e--CCCEEEEEEeC
Confidence 9 67999988764
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.5e-12 Score=96.14 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCceEEEcCCC--ccc---CHHHHhHhhhhcCCcEEEEEEeeCC----CCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 021958 80 EIRTLWIGDLQ--YWM---DETYLNTCFAHTGEVVAVKVIRNKQ----TGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (305)
Q Consensus 80 ~~~~l~v~nLp--~~~---t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~ 150 (305)
.+++|+|.|+- .++ -+++|++.|++||.|.+++|.+++. +++++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 46899999983 222 3689999999999999999999864 357889999999999999999999999999
Q ss_pred CCcceeeeccC
Q 021958 151 GEQNFRLNWAS 161 (305)
Q Consensus 151 ~~~~i~v~~~~ 161 (305)
.|+.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 67999988764
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=1.7e-12 Score=112.92 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCCceEEEcC--CCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC-CCc-
Q 021958 78 PGEIRTLWIGD--LQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQ- 153 (305)
Q Consensus 78 ~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~-~~~- 153 (305)
...+++|||+| |+..+|+++|+++|++||.|.++.+.. +||||||+|.+.++|++|++.|||..+.. .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999887643 46899999999999999999999998832 233
Q ss_pred -ceeeeccCCCCCCC--CCCCCCceEEEcCCCcCCCHHHHHHHHh
Q 021958 154 -NFRLNWASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFR 195 (305)
Q Consensus 154 -~i~v~~~~~~~~~~--~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 195 (305)
.+.+.+........ ....+....+ ++..+++++=..++.
T Consensus 89 ~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~ 130 (345)
T 3tht_A 89 ITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLE 130 (345)
T ss_dssp EECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHT
T ss_pred eEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHH
Confidence 57777764221110 1112222333 355567666556665
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.8e-11 Score=85.23 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=62.2
Q ss_pred CCceEEEcCCC-------cccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 80 EIRTLWIGDLQ-------YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 80 ~~~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
..++|.|.-.. ..+++++|+++|++||.|.++.++ ++++|||||+|.+.++|..|++.+++ + .+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g 79 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--VD 79 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--SS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--CC
Confidence 35566665443 468999999999999999999987 36789999999999999999987544 3 47
Q ss_pred cceeeeccCCCC
Q 021958 153 QNFRLNWASFGA 164 (305)
Q Consensus 153 ~~i~v~~~~~~~ 164 (305)
+.|+|.|+....
T Consensus 80 ~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 NPLKISWLEGQP 91 (100)
T ss_dssp SBCEEECSSCCC
T ss_pred CeEEEEEccCCC
Confidence 889999987653
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=83.49 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCc----CC-CH---HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021958 171 TPDHTIFVGDLAA----DV-TD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 171 ~~~~~l~v~nlp~----~~-~~---~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 242 (305)
.+..||+|...+. ++ .+ .+|.+.|. .||.|..+++..|. +||+|.+.++|.+|++ |||..++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4567888877652 23 32 67999999 99999999998763 8999999999999998 9999999
Q ss_pred ceeeEEccCCCCCCC
Q 021958 243 TRPMRIGPATNKKTV 257 (305)
Q Consensus 243 g~~l~v~~~~~~~~~ 257 (305)
||.|+|+++++....
T Consensus 75 Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 75 NRTITIALKSPSGPS 89 (91)
T ss_dssp TEEEEEEECCCSSCS
T ss_pred CeEEEEEeCCCCccc
Confidence 999999999876543
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=8.2e-11 Score=86.30 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCcC-CCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--Cceeccee
Q 021958 170 DTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD-ESEQLRAMTEMN--GVFCSTRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g~~ 245 (305)
...++.|+|+||+.+ +++++|+++|+ .||.|.+|.+..+.. .|||+|.+ .++|..|++.|+ +..|+|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 456899999999999 99999999999 999999999987742 59999999 899999999995 67789988
Q ss_pred eEEccCC
Q 021958 246 MRIGPAT 252 (305)
Q Consensus 246 l~v~~~~ 252 (305)
+++....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887644
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=8.5e-11 Score=86.05 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCceEEEcCCCc--c--------cCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 80 EIRTLWIGDLQY--W--------MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 80 ~~~~l~v~nLp~--~--------~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
.++.|.|.|+=. + --+++|++.|++||.|.++.+.++. .+|++||+|.+.++|.+|++.|||+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 456888888732 1 1245789999999999999886542 589999999999999999999999999
Q ss_pred CCCcceeeeccC
Q 021958 150 NGEQNFRLNWAS 161 (305)
Q Consensus 150 ~~~~~i~v~~~~ 161 (305)
.|+.|++.++.
T Consensus 81 -~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 -AGKMITAAYVP 91 (114)
T ss_dssp -TTEECEEEEEC
T ss_pred -CCEEEEEEEEc
Confidence 67899988874
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.2e-10 Score=80.44 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=62.9
Q ss_pred CCCCceEEEcCCCcC------CCH---HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 021958 170 DTPDHTIFVGDLAAD------VTD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~------~~~---~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 240 (305)
..+..||+|..++.. ..+ .+|.+.|. .||+|..+++..|. +||+|.+.++|.+|++ |+|..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 456789999887632 332 56899998 99999999998773 9999999999999998 99999
Q ss_pred ecceeeEEccCCC
Q 021958 241 CSTRPMRIGPATN 253 (305)
Q Consensus 241 ~~g~~l~v~~~~~ 253 (305)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998654
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.08 E-value=2.5e-10 Score=94.22 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=61.1
Q ss_pred CCHHHHHHHHhhcCCCeeEEEEEecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCC
Q 021958 185 VTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (305)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~i~i~~~~----~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 253 (305)
-.+++|++.|+ +||.|.++.|..+. .++.++|++||+|.+.++|.+|++.|||+.++||.|+|.|+..
T Consensus 141 e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35689999999 99999999998654 3458999999999999999999999999999999999999764
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.6e-09 Score=79.43 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCCceEEEcCCCcc-cCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcC-HHHHHHHHHHhC--CCCCCCCCcc
Q 021958 79 GEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVLQTFN--GTPMPNGEQN 154 (305)
Q Consensus 79 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--g~~~~~~~~~ 154 (305)
...+.|||+||+.+ ++.++|+++|++||.|..|.+.++.. .|||+|.+ .++|..|++.++ +..| .+..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL--RNKE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT--TSSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE--eCcE
Confidence 45689999999999 99999999999999999999988764 59999999 899999999985 4445 4444
Q ss_pred eee
Q 021958 155 FRL 157 (305)
Q Consensus 155 i~v 157 (305)
+++
T Consensus 88 ~~~ 90 (121)
T 1owx_A 88 VTW 90 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.3e-09 Score=73.67 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=58.2
Q ss_pred ceEEEcCCC----cccCH----HHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 82 RTLWIGDLQ----YWMDE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 82 ~~l~v~nLp----~~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
-||+|.-.+ .+..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..+ .++
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~Gr 76 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--LNR 76 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--TTE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--CCe
Confidence 467776554 23444 6788999999999999999874 8999999999999997 999999 789
Q ss_pred ceeeeccCC
Q 021958 154 NFRLNWASF 162 (305)
Q Consensus 154 ~i~v~~~~~ 162 (305)
.++|+.++.
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999988764
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.2e-08 Score=68.98 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcC-----CCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARY-----PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~-----G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
...++|-|-|||..+++..|+.+++ .+ |.|..|.+..| -+=|+|+|.|...|.+|.-.|+|..|.||+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve-~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQ-EEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHH-HHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHh-hhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3468899999999999999999999 99 99999999887 445999999999999999999999999999
Q ss_pred eEEcc
Q 021958 246 MRIGP 250 (305)
Q Consensus 246 l~v~~ 250 (305)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=1.5e-08 Score=83.37 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=59.0
Q ss_pred cCHHHHhHhhhhcCCcEEEEEEeeCC----CCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcceeeeccC
Q 021958 93 MDETYLNTCFAHTGEVVAVKVIRNKQ----TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (305)
Q Consensus 93 ~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (305)
-.+++|++.|++||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|+|+.+ .||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--CCeEEEEEEcC
Confidence 35678999999999999999986654 348999999999999999999999999999 67889888764
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.2e-08 Score=70.50 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=57.6
Q ss_pred ceEEEcCCCc-----ccCH----HHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 021958 82 RTLWIGDLQY-----WMDE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (305)
Q Consensus 82 ~~l~v~nLp~-----~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~ 152 (305)
-||+|.-++. ++.+ .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|++ |+|..+ .+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v--~G 84 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV--KG 84 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE--TT
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee--CC
Confidence 5888887753 2333 5688899999999999999874 9999999999999997 999999 77
Q ss_pred cceeeeccC
Q 021958 153 QNFRLNWAS 161 (305)
Q Consensus 153 ~~i~v~~~~ 161 (305)
+.+++++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999887653
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=4.1e-06 Score=58.76 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=63.7
Q ss_pred CceEEEcCCCcCC-C----HHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeE
Q 021958 173 DHTIFVGDLAADV-T----DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (305)
Q Consensus 173 ~~~l~v~nlp~~~-~----~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 247 (305)
.++|+|.||+.++ . .+.++++|. .|+.+......+. -.-..|.|.+.++|.+|...||+..++|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 5789999998876 2 257789998 9999988877755 23478999999999999999999999999999
Q ss_pred EccCCCC
Q 021958 248 IGPATNK 254 (305)
Q Consensus 248 v~~~~~~ 254 (305)
|.|+..-
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998843
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.7e-06 Score=58.68 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=63.7
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhc-----CCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
+..++|-+-|||..+++..|+.+++.+ |.++.+.+..|-. -|+|+|.+...|-+|.-.|+|.++. ++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~--gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQ--GK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEET--TE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeec--Ce
Confidence 457899999999999999999999999 9999999988853 5999999999999999899999994 66
Q ss_pred ceeee
Q 021958 154 NFRLN 158 (305)
Q Consensus 154 ~i~v~ 158 (305)
.+++.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66664
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=0.00012 Score=51.12 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=62.9
Q ss_pred CCCCceEEEcCCCcCCCHHHHHHHHhhc----CCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeccee
Q 021958 170 DTPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (305)
Q Consensus 170 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~----~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 245 (305)
....++|.|.|||.+++++.|.-+|+.. -|.|+++.... +-|+|+|.+.+.|++.|+. ..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 3457899999999999999999999842 46788887753 4589999999999999874 368899999
Q ss_pred eEEccCCCCC
Q 021958 246 MRIGPATNKK 255 (305)
Q Consensus 246 l~v~~~~~~~ 255 (305)
|.|.....+.
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9998755543
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.89 E-value=9.3e-05 Score=51.01 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
.....++| ++|.++...||.++|+ .||.|. |+.+.|. .|||.|.+.+.|..|++.+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs-~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFS-AFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHT-TTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhh-ccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556777 9999999999999999 999765 7777663 69999999999999999764
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00033 Score=48.89 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhh---c--CCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAH---T--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~---~--G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (305)
...++|.|.|||..+.++.|.-+|++ . |.|.++.... +-|+|+|.+.+.|++.++. ....+ .+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L--~~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL--HGA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS--SSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee--cCe
Confidence 45679999999999999999999987 2 4577776643 2599999999999999854 24445 445
Q ss_pred ceeeeccCCCCCCCCCCCCCceEEEcCCCcCCC
Q 021958 154 NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVT 186 (305)
Q Consensus 154 ~i~v~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 186 (305)
.+.|.... .....+|++.+|+..++
T Consensus 75 ~LsV~P~~--------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP--------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC--------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC--------CCCcceEeeecCCCCCC
Confidence 66664332 22357899999988764
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.75 E-value=0.00015 Score=50.01 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=56.3
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 242 (305)
.+|.|++||..+||+++.+.+. ....+....++..+.+. ..-.-|+|.|.+.+++..-.+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999998 88888877776554322 22345999999999999999999998873
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00019 Score=49.40 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=56.7
Q ss_pred ceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCC--ccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
++|.|++||+.+|++++.+.++.+..+.....+..+.+.. .-+-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998877777776554322 2346999999999999999999998774
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00026 Score=48.77 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=46.7
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 144 (305)
.+.++| ++|.++...||.++|+.||.| .|+.+-|. -|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999965 77777764 69999999999999998653
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00048 Score=48.27 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=61.6
Q ss_pred CCceEEEcCCCccc-CH----HHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 021958 80 EIRTLWIGDLQYWM-DE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (305)
Q Consensus 80 ~~~~l~v~nLp~~~-t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (305)
-.++|+|.||+.++ +. +.++++|..|+.+..+...+.= +-.-|.|.+.++|.+|...|++..+ .|..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f--~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEF--LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEE--TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcccee--cCce
Confidence 34689999999766 33 4668899999998887777642 1478999999999999999999999 5678
Q ss_pred eeeeccCCC
Q 021958 155 FRLNWASFG 163 (305)
Q Consensus 155 i~v~~~~~~ 163 (305)
+++-++...
T Consensus 76 ~r~YFgq~~ 84 (104)
T 1wey_A 76 MKLYFAQTL 84 (104)
T ss_dssp CEEECCCCS
T ss_pred eEEEecCCC
Confidence 999888743
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00052 Score=49.49 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc-eeeEEc
Q 021958 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST-RPMRIG 249 (305)
Q Consensus 171 ~~~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~ 249 (305)
.....|.|-+.+... ...|.+.|+ +||+|.+.... + ...+-.|+|.+..+|++||.+ ||..|+| -.|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 346789999999985 566778888 99999887761 1 256899999999999999986 9999974 778887
Q ss_pred cCCC
Q 021958 250 PATN 253 (305)
Q Consensus 250 ~~~~ 253 (305)
....
T Consensus 93 p~~d 96 (119)
T 1wwh_A 93 PCID 96 (119)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7654
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00016 Score=49.95 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=45.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
..++| ++|.++...||.++|+ .||.|. |+.+.|. .|||.|.+.+.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999 999554 7777663 69999999999999999875
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00034 Score=48.38 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=45.7
Q ss_pred eEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 021958 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 144 (305)
.||+-++|.++...||.++|+.||.| .|+++-|. -|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999954 77777764 69999999999999998764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.82 E-value=0.0015 Score=45.23 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=52.0
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCC--CccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
-+.+|.|+.||+.+|++++.+.++.+-.+.....+..+.+. ..-.-|||.|.+.++.....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 35689999999999999999998876554333333322221 12245899999999999999999998774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.82 E-value=0.0016 Score=45.16 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=50.6
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceec
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 242 (305)
+-+|.|+.||..+||+++.+.++ ..-.+....++..+.+. ..-.-|+|.|++.++...-.+..+|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56899999999999999998887 55444433332221111 12235899999999999999999998863
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.0056 Score=44.10 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=51.2
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 149 (305)
...+-|.|-+.+... .+.|.+.|++||.|.+.... ....+-.|.|.+..+|++||.+ ||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 456789999999885 67888999999999887752 1234899999999999999955 998884
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.57 E-value=0.0036 Score=45.79 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=55.7
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeE-EEEEecC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDR--------LTG-----RTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~-i~i~~~~--------~~~-----~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
...|.|-+.|.+... .+.+.|+ +||.|.+ +....+. ... ....+-.|+|++..+|.+||.. ||
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred ceEEEEEecCHHHHH-HHHHHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 356778888777554 5677788 9999876 2211100 000 1356789999999999999986 99
Q ss_pred ceecceeeEEccCCC
Q 021958 239 VFCSTRPMRIGPATN 253 (305)
Q Consensus 239 ~~~~g~~l~v~~~~~ 253 (305)
..|+|..|-|...+.
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999999988754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.19 E-value=0.0026 Score=57.27 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=41.6
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
.+.|+|. .+..+++.+|.++|+ +||.|.++..-.+. .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~-~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLS-QFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHG-GGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHH-hcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789996 799999999999999 99999998886553 4799999999999987764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.0032 Score=56.69 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHH
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 141 (305)
..|+|+|. .+..+++.+|.++|++||.|.++.+-.++ | -||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 45899997 79999999999999999999998877653 2 599999999999987764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.85 E-value=0.099 Score=38.17 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=45.0
Q ss_pred CCceEEEcCCCcccCHHHHhHhhhhcCCcEE-EEEEee--------CCCC-----CccceEEEEEcCHHHHHHHHHHhCC
Q 021958 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRN--------KQTG-----QIEGYGFIEFISRAGAERVLQTFNG 145 (305)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-~~~~~~--------~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g 145 (305)
....|.|-+.|.+.+ ..+.+.|++||.|.+ +...++ +... ....+-.|+|.+..+|.+||.+ ||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 345677778876654 667889999999766 211110 0000 1245779999999999999955 99
Q ss_pred CCCC
Q 021958 146 TPMP 149 (305)
Q Consensus 146 ~~~~ 149 (305)
..+.
T Consensus 84 ~ii~ 87 (132)
T 3p3d_A 84 AVFN 87 (132)
T ss_dssp CEET
T ss_pred eEeC
Confidence 8884
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.61 E-value=0.55 Score=42.97 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 238 (305)
...++|+ ++..+...+|.++|+ .||.+ +|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566665 899999999999999 99965 4665544 2599999999999999998853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.77 E-value=0.77 Score=42.01 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=45.1
Q ss_pred CceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 021958 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (305)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 144 (305)
...++|+ ++..+...+|.++|+.||.+ +|+++-+. .|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 88899999999999999965 66665543 79999999999999998875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=82.42 E-value=8.8 Score=25.62 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred CceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021958 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 173 ~~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
++-+.|-|+|..+-..++.-... ..|---.+..+ .|.|.+.|.+.++-.-|+..|-
T Consensus 12 nclikiinipqgtlkaevvlavr-hlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVR-HLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHH-TTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeeh-hcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 57788999999988888777776 77877777765 4569999999999999998773
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.57 E-value=19 Score=22.96 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhcCC----CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 184 DVTDYMLQETFRARYP----STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 184 ~~~~~~l~~~f~~~~G----~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
.++..+|..++....| .|-.|++. ..|.||+-... .|..+++.|++..++|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3555677777763444 14455553 23788887664 5778889999999999999987654
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=61.61 E-value=27 Score=22.19 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=39.1
Q ss_pred eEEEcCC-CcccCHHHHhHhhhhcCC-----cEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccee
Q 021958 83 TLWIGDL-QYWMDETYLNTCFAHTGE-----VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (305)
Q Consensus 83 ~l~v~nL-p~~~t~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (305)
+++|..- -..++..+|..++..-+. |-.+.+..+ |.||+... +.+..+++.|++..+ .++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i--~g~~~~ 70 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTV--KGKQLK 70 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC-----CCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccC--cCceEE
Confidence 4555322 356677888888876544 445555322 89999876 456678888888888 556666
Q ss_pred eecc
Q 021958 157 LNWA 160 (305)
Q Consensus 157 v~~~ 160 (305)
+..+
T Consensus 71 v~~~ 74 (76)
T 2g0c_A 71 VNKA 74 (76)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6543
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=59.36 E-value=29 Score=23.85 Aligned_cols=49 Identities=10% Similarity=0.172 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHhhcCCCeeE----EEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKG----AKVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~----i~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (305)
...+..+|++.+...|+.-.+ ..+...-..|+++|||.| |+|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 567888888888767776222 223333345667777744 6777666554
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.83 E-value=29 Score=23.05 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=41.7
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
-++-.++...+..++++.++..||. |..+..+.-+ .| ..-|+|++..-.+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHhh
Confidence 3444567788999999999877875 6677666543 23 345999999888888765543
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=56.65 E-value=25 Score=24.02 Aligned_cols=69 Identities=7% Similarity=0.038 Sum_probs=50.5
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCCCC
Q 021958 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 254 (305)
+|-.++..++-+||.......||.-.+++.. +. -..|-..+.++-.+|++.|+- .-.-+.|+|-....+
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDr-ss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILLVING 88 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHH-CSSCCSEEEEEEECC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHcc-CCcccceEEEEecCC
Confidence 3445678899999999998899998888876 21 257999999999999998763 334445555444443
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=54.26 E-value=30 Score=23.88 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHhhcCCCeeE----EEEEecCCCCCcccEEEEEeCCHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKG----AKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~----i~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (305)
...+..+|++.+...|+.-.+ ..+...-..|+++|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567788888888766665222 223334445677777754 677777654
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=51.36 E-value=35 Score=23.72 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=30.0
Q ss_pred cCCCHHHHHHHHhhcCCCeeEE----EEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKGA----KVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i----~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (305)
...+..+|++.+...|+.-.++ .+...-..|+++|||.| |+|.+.|.+-
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3567888888887677662222 22233345667777754 7777777643
No 411
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=48.04 E-value=64 Score=23.44 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHhhcCCCeeEE----EEEecCCCCCcccEEEEEeCCHHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKGA----KVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i----~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (305)
...+..+|++.+...|+.-.++ .+...-..|++.|||.| |+|.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 3578899999998788763222 22233345667777755 6777776643
No 412
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=40.22 E-value=84 Score=21.21 Aligned_cols=53 Identities=6% Similarity=0.033 Sum_probs=43.6
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 021958 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (305)
+|--++.-+.-+||.......||.-.++.+..+. -.|-..+.++-.+|++.|+
T Consensus 32 RIi~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 32 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHH
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhc
Confidence 3445688899999999998899999999887332 5688999999999999765
No 413
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=39.99 E-value=81 Score=20.98 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=48.8
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEEccCC
Q 021958 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 252 (305)
+|--++..+.-++|.+.....||.-.++.+..+. -.|-..+.++-.+|++.|+ ....-+.|+|-...
T Consensus 16 RIi~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 16 RIIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILD-RSSSMKSLRILLLS 82 (94)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEE
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhc-cCccccceEEEEEc
Confidence 3445678899999999998899999888887331 4688899999999999765 33333444554433
No 414
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.80 E-value=50 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=40.8
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
-++-.++...+..+|++.++..||. |..|..+.-. .| ..-|+|++..-.+|....+.+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHHhh
Confidence 3444567788999999999877774 6677666554 23 335999998887777765543
No 415
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=39.26 E-value=73 Score=21.78 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=46.7
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecceeeEE
Q 021958 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 248 (305)
+|--++..+.-++|.+.....||.-.++.+..+. -.|-..+.++-.+|++.|+ ....-+.|+|
T Consensus 43 RIiqf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLD-rs~~mkSLRI 105 (111)
T 2c60_A 43 RIIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILD-RSSSMKSLRI 105 (111)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHH-HCSSCCSEEE
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhc-cCccccceEE
Confidence 3445678899999999998899999988887331 4688899999999999765 3333334444
No 416
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=38.76 E-value=51 Score=24.41 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=40.7
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 021958 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (305)
-++-.++...+..+|++.++..||. |..|..+.-. .| ..-|||++..-.+|......+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHHhh
Confidence 3444567788999999999877775 6677666554 23 335999998887777765543
No 417
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=44.82 E-value=6.5 Score=27.45 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=34.3
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEE--EEeCCHHHHHHHHHHhCC
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF--VRFGDESEQLRAMTEMNG 238 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~af--V~f~~~~~A~~a~~~l~~ 238 (305)
.+|-|... .++++|..+.. +.+ +..+.+.....+|+. -|.. =.|.|.++|.+|++.|-.
T Consensus 26 YTLQL~a~---~~~~~l~~f~~-~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAK-KEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 44444433 34556666665 665 444555443333432 2332 378999999999988764
No 418
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=38.39 E-value=57 Score=24.09 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHhhcCCCeeEEEEE----ecCCCCCcccEEEEEeCCHHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKGAKVV----IDRLTGRTKGYGFVRFGDESEQLRA 232 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i~i~----~~~~~~~~~g~afV~f~~~~~A~~a 232 (305)
...+..||++.+...|+.=.++.++ ..-..|.+.|||.| |+|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 4577888888887667762222222 22234566777755 6777776643
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.67 E-value=79 Score=19.29 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=40.9
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
.++.|.++.=.--...+.+.+. . ..|..+.+... .+-+.|+|.+.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~-~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALE-E-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHH-H-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhc-c-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 5688888888878889999998 7 77888877433 45678888866666677765
No 420
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=34.29 E-value=17 Score=24.88 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=26.6
Q ss_pred cCCCHHHHHHHHhhcCCCeeEEEEEecC----CCCCcccEEEEEeCCHHHHHH
Q 021958 183 ADVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLR 231 (305)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~i~i~~~~----~~~~~~g~afV~f~~~~~A~~ 231 (305)
...+..+|++.+...|+.-.++.++..- ..|+++|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3567788888877666653333343332 23556666644 455555443
No 421
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=33.35 E-value=70 Score=23.92 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=26.9
Q ss_pred CCHHHHHHHHhhcCCCee---EEEEEecCCCCCcccEEEEE
Q 021958 185 VTDYMLQETFRARYPSTK---GAKVVIDRLTGRTKGYGFVR 222 (305)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~---~i~i~~~~~~~~~~g~afV~ 222 (305)
+++++|+++-. ..|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~-~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAAN-KQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHH-TTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHH-hCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999998 899876 34455553478888777653
No 422
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=31.47 E-value=50 Score=24.53 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=38.8
Q ss_pred EEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021958 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 177 ~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
++-.++.+.+..+|++.++..||. |..|..+.-. .| ..-|||++..-.+|.+....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 344557778888899888867775 6677666543 22 34599999988777776544
No 423
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.08 E-value=1.3e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=28.5
Q ss_pred cCHHHHhHhh--hhcCCcEEEEEEeeCCCCCccceEEEEEcCHHH
Q 021958 93 MDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135 (305)
Q Consensus 93 ~t~~~l~~~f--~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 135 (305)
....+|.+.| +.|..+ .++...+. ....|++.|+|.+.-.
T Consensus 33 ~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHH
T ss_pred CCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChH
Confidence 3457889977 889886 45666654 3477899999976543
No 424
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.81 E-value=88 Score=20.66 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=38.8
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 021958 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (305)
-++-.++.+.+..+|++.++..||. |..+..+.-. .+ ..-|+|++..-.+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHHHH
Confidence 3444567889999999999877874 6667666543 22 3459999988777665543
No 425
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.79 E-value=95 Score=20.62 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=31.4
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCCC
Q 021958 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (305)
Q Consensus 200 ~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~~ 254 (305)
+|.++++..-...|+-++||-|+|.+. + .+++..+ +.+.|.|..-+.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~------f-vI~~ikVieg~~GlFVaMPs~k 54 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPSKR 54 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCcC
Confidence 477888877666788899999999862 1 2344443 3345777664433
No 426
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.46 E-value=1.2e+02 Score=22.58 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=39.8
Q ss_pred EEEcCCCcCCCHHHHHHHHhhcCCC-eeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 021958 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (305)
Q Consensus 176 l~v~nlp~~~~~~~l~~~f~~~~G~-i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (305)
-|+-.++.+.+..+|++.++..||. |..|..+.-. .| ..-|+|++..-.+|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~~--~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-DG--EKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS-SS--CEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 3444567888999999999877875 6677666543 22 34599999887776665544
No 427
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.51 E-value=60 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=18.7
Q ss_pred ccceEEEEEcCHHHHHHHHHHh
Q 021958 122 IEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 122 ~~g~afV~f~~~~~a~~a~~~l 143 (305)
-.||-||++...++...+++.+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTC
T ss_pred cCCEEEEEEecchhHHHHHHCC
Confidence 6799999999999988887654
No 428
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.77 E-value=1.3e+02 Score=17.77 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=38.0
Q ss_pred ceEEEcCCCcCCCHHHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeCC---HHHHHHHHHH
Q 021958 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD---ESEQLRAMTE 235 (305)
Q Consensus 174 ~~l~v~nlp~~~~~~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~~---~~~A~~a~~~ 235 (305)
.++.|.++.-.--...+.+.+. ....|..+.+... .+-+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~-~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIA-KVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHH-TSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHh-cCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4577888877777788999998 7777888877544 3457788743 3445555554
No 429
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.04 E-value=1.2e+02 Score=20.74 Aligned_cols=47 Identities=6% Similarity=0.159 Sum_probs=31.1
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCC
Q 021958 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATN 253 (305)
Q Consensus 200 ~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~ 253 (305)
.|.+++|..-...|+-++||-|+|.+. + .+|+..+ +...|.|..-+.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~------f-vI~dIkVieg~~GlFVaMPSr 53 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE------F-VVHDIRVIDGNNGLFVAMPSK 53 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCc
Confidence 477888877666788899999999862 1 2355443 335577766443
No 430
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.51 E-value=63 Score=22.00 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=24.3
Q ss_pred CCCCCCCCceEEEcCCCcccCHHHHhHhhh
Q 021958 74 QQGQPGEIRTLWIGDLQYWMDETYLNTCFA 103 (305)
Q Consensus 74 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 103 (305)
++....+..+|+|..-|...|+++|.+.+.
T Consensus 8 pp~~~~e~~rl~ip~DP~~Ws~~~V~~WL~ 37 (98)
T 1x66_A 8 PPNMTTNERRVIVPADPTLWTQEHVRQWLE 37 (98)
T ss_dssp CCCCCCSSSCCCCCSSGGGCCTTHHHHHHH
T ss_pred CCCccccceecCCCCChhhcCHHHHHHHHH
Confidence 344556788999999999999999999763
No 431
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.23 E-value=1.9e+02 Score=19.18 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCceEEEcCCCcccCHHHHhHhhhhcCCcEEEEEEeeCCCCCccceEEEEEcCHHHHHHHHHHh
Q 021958 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (305)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 143 (305)
...+-+-|-|+|..+-..++.-.....|--..|..+- |.|.+.|.+.++-+.|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3456788999999998888888888888766665542 46999999999999999876
No 432
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.75 E-value=1.3e+02 Score=20.71 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=31.4
Q ss_pred CeeEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cceeeEEccCCCC
Q 021958 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (305)
Q Consensus 200 ~i~~i~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~~ 254 (305)
.|.+|+|..-...|+-++||-|+|.+. + .+++..+ +...|.|..-+.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~------F-vI~dIKViEg~~GlFVaMPSrk 54 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPSKR 54 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCCcC
Confidence 467788877666788899999999862 1 2355443 3455777664443
No 433
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.60 E-value=12 Score=27.87 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=15.1
Q ss_pred HHHHHHHhhcCCCeeEEEEEecCCCCCcccEEEEEeC
Q 021958 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (305)
Q Consensus 188 ~~l~~~f~~~~G~i~~i~i~~~~~~~~~~g~afV~f~ 224 (305)
+|+.++|. ..|.|+... + .+||+||+-.
T Consensus 2 ~~~~~l~~-~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLH-GAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEE-EEEEEEEEE---T-----TTTEEEEEEE
T ss_pred Cccccccc-ceeEEEEEE---C-----CCCeeEEeeC
Confidence 34555665 566654332 2 2899999975
No 434
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.27 E-value=59 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=18.9
Q ss_pred CCCceEEE-------cCCCcccCHHHHhHhhhh
Q 021958 79 GEIRTLWI-------GDLQYWMDETYLNTCFAH 104 (305)
Q Consensus 79 ~~~~~l~v-------~nLp~~~t~~~l~~~f~~ 104 (305)
...-+||| .+|...+|..||...+.+
T Consensus 7 ~mel~Vwv~g~er~VsGvT~~TTC~DVV~aL~~ 39 (95)
T 2cs4_A 7 GMELKVWVDGVQRIVCGVTEVTTCQEVVIALAQ 39 (95)
T ss_dssp CBCCCEEETTEEECCSSBCSSSCHHHHHHHHHH
T ss_pred CCEEEEEECCceeEEECCCCCCcHHHHHHHHHh
Confidence 33456666 478889999999997654
No 435
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.11 E-value=2e+02 Score=20.69 Aligned_cols=48 Identities=6% Similarity=0.081 Sum_probs=33.1
Q ss_pred EcCCCcCCCHHHHHHHHhhcCC--CeeEEEEEecCC----------CCCcccEEEEEeCC
Q 021958 178 VGDLAADVTDYMLQETFRARYP--STKGAKVVIDRL----------TGRTKGYGFVRFGD 225 (305)
Q Consensus 178 v~nlp~~~~~~~l~~~f~~~~G--~i~~i~i~~~~~----------~~~~~g~afV~f~~ 225 (305)
+..+...++++++++.+...++ .|.++.+-.... .....+|.++.|+|
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 7888999999999999964555 466665543321 13346788888876
Done!