Query 021959
Match_columns 305
No_of_seqs 199 out of 2411
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 8.1E-35 2.8E-39 252.7 27.9 258 39-299 11-274 (340)
2 2chq_A Replication factor C sm 100.0 4.1E-35 1.4E-39 252.4 22.6 253 39-294 3-255 (319)
3 1iqp_A RFCS; clamp loader, ext 100.0 2.4E-34 8.2E-39 248.5 26.7 256 39-297 11-267 (327)
4 3u61_B DNA polymerase accessor 100.0 2E-33 6.9E-38 242.5 25.4 245 37-294 10-264 (324)
5 1sxj_D Activator 1 41 kDa subu 100.0 1.8E-33 6E-38 245.7 23.9 261 37-297 21-295 (353)
6 1sxj_B Activator 1 37 kDa subu 100.0 1E-32 3.5E-37 237.9 25.1 251 39-295 7-259 (323)
7 1jr3_A DNA polymerase III subu 100.0 2.4E-31 8.3E-36 233.8 30.1 256 40-300 3-279 (373)
8 3pvs_A Replication-associated 100.0 1.1E-31 3.8E-36 239.3 25.8 251 40-303 13-292 (447)
9 1sxj_E Activator 1 40 kDa subu 100.0 2.5E-31 8.6E-36 232.1 22.1 245 41-287 2-280 (354)
10 2chg_A Replication factor C sm 100.0 4.4E-30 1.5E-34 209.5 27.1 222 39-263 3-224 (226)
11 1njg_A DNA polymerase III subu 100.0 4.3E-27 1.5E-31 194.3 25.2 220 39-263 9-249 (250)
12 1sxj_A Activator 1 95 kDa subu 100.0 2E-27 6.7E-32 216.7 23.3 240 34-280 20-292 (516)
13 2gno_A DNA polymerase III, gam 99.9 4.2E-26 1.4E-30 193.6 19.5 223 57-295 1-235 (305)
14 1a5t_A Delta prime, HOLB; zinc 99.9 3.2E-25 1.1E-29 191.6 20.5 222 57-291 6-250 (334)
15 3pfi_A Holliday junction ATP-d 99.9 7.2E-25 2.5E-29 190.0 21.9 209 38-262 14-251 (338)
16 3uk6_A RUVB-like 2; hexameric 99.9 1.8E-24 6.2E-29 189.6 22.4 225 36-264 26-329 (368)
17 1hqc_A RUVB; extended AAA-ATPa 99.9 1.5E-23 5.1E-28 180.7 22.4 205 43-262 2-235 (324)
18 1jr3_D DNA polymerase III, del 99.9 3.3E-24 1.1E-28 186.2 15.9 229 65-303 9-247 (343)
19 3bos_A Putative DNA replicatio 99.9 2.3E-23 7.7E-28 171.8 17.2 210 39-263 13-241 (242)
20 1in4_A RUVB, holliday junction 99.9 1.3E-21 4.4E-26 169.0 23.6 210 38-263 10-248 (334)
21 2c9o_A RUVB-like 1; hexameric 99.9 8.9E-22 3E-26 176.9 23.2 123 143-266 297-438 (456)
22 2v1u_A Cell division control p 99.9 1E-21 3.4E-26 173.1 21.2 244 41-290 10-298 (387)
23 1fnn_A CDC6P, cell division co 99.9 5.6E-21 1.9E-25 168.5 23.8 222 40-265 7-274 (389)
24 3vfd_A Spastin; ATPase, microt 99.9 8.6E-21 2.9E-25 167.3 23.7 190 42-245 104-327 (389)
25 3eie_A Vacuolar protein sortin 99.9 8.9E-21 3.1E-25 163.0 20.9 197 41-247 6-232 (322)
26 3b9p_A CG5977-PA, isoform A; A 99.9 4.2E-20 1.4E-24 157.2 24.6 211 42-266 10-273 (297)
27 4b4t_J 26S protease regulatory 99.9 3.4E-20 1.2E-24 160.6 22.9 200 48-262 143-386 (405)
28 2qp9_X Vacuolar protein sortin 99.9 5.5E-20 1.9E-24 159.9 23.9 193 42-248 40-266 (355)
29 3syl_A Protein CBBX; photosynt 99.9 5.5E-21 1.9E-25 163.5 17.0 187 54-248 32-260 (309)
30 2qby_B CDC6 homolog 3, cell di 99.9 5E-21 1.7E-25 168.6 16.0 223 39-265 9-270 (384)
31 3d8b_A Fidgetin-like protein 1 99.9 8.5E-20 2.9E-24 158.9 22.1 195 43-247 74-299 (357)
32 2z4s_A Chromosomal replication 99.9 2.2E-20 7.7E-25 166.7 18.5 217 47-266 98-333 (440)
33 4b4t_I 26S protease regulatory 99.9 1.1E-19 3.6E-24 158.0 21.4 200 47-262 176-420 (437)
34 3te6_A Regulatory protein SIR3 99.8 1.4E-19 4.8E-24 153.2 21.1 194 55-250 22-286 (318)
35 1lv7_A FTSH; alpha/beta domain 99.8 1.3E-19 4.4E-24 150.9 20.5 205 43-263 2-250 (257)
36 4b4t_M 26S protease regulatory 99.8 1.3E-19 4.5E-24 159.3 20.7 202 48-264 176-421 (434)
37 2qz4_A Paraplegin; AAA+, SPG7, 99.8 5.8E-19 2E-23 147.2 23.7 186 49-248 2-227 (262)
38 4b4t_L 26S protease subunit RP 99.8 7.7E-19 2.6E-23 154.5 24.4 199 49-262 177-419 (437)
39 1xwi_A SKD1 protein; VPS4B, AA 99.8 5.9E-19 2E-23 151.3 23.0 189 46-247 5-227 (322)
40 4b4t_H 26S protease regulatory 99.8 2.4E-19 8.3E-24 157.2 20.6 198 50-262 206-447 (467)
41 1ofh_A ATP-dependent HSL prote 99.8 6.7E-20 2.3E-24 156.7 16.6 204 53-265 15-299 (310)
42 3h4m_A Proteasome-activating n 99.8 1.9E-19 6.6E-24 152.1 18.7 205 48-263 12-256 (285)
43 1l8q_A Chromosomal replication 99.8 8.1E-20 2.8E-24 157.3 15.5 204 51-262 9-237 (324)
44 4b4t_K 26S protease regulatory 99.8 1.4E-18 4.8E-23 152.7 22.6 198 50-262 169-411 (428)
45 2zan_A Vacuolar protein sortin 99.8 4.9E-19 1.7E-23 158.3 19.3 193 43-248 124-350 (444)
46 2qby_A CDC6 homolog 1, cell di 99.8 1.4E-19 4.8E-24 159.3 14.3 215 41-265 11-272 (386)
47 2r44_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 152.0 15.6 212 41-263 15-295 (331)
48 1g8p_A Magnesium-chelatase 38 99.8 1.9E-18 6.6E-23 150.2 16.7 216 47-264 18-321 (350)
49 3pxg_A Negative regulator of g 99.8 1.1E-18 3.7E-23 157.1 15.2 194 40-248 167-383 (468)
50 2ce7_A Cell division protein F 99.8 1E-17 3.4E-22 149.6 20.8 199 49-263 12-254 (476)
51 4fcw_A Chaperone protein CLPB; 99.8 2.3E-18 7.7E-23 147.3 15.8 194 53-248 17-276 (311)
52 3cf0_A Transitional endoplasmi 99.8 5.8E-18 2E-22 144.0 18.2 187 46-247 8-233 (301)
53 2bjv_A PSP operon transcriptio 99.8 1E-17 3.5E-22 140.0 16.7 205 51-259 4-251 (265)
54 1jbk_A CLPB protein; beta barr 99.8 1.4E-18 4.8E-23 137.8 9.8 163 41-209 10-194 (195)
55 1qvr_A CLPB protein; coiled co 99.8 1.1E-17 3.8E-22 161.1 16.0 198 41-248 158-390 (854)
56 3hu3_A Transitional endoplasmi 99.7 1.3E-17 4.4E-22 150.1 14.4 188 46-248 197-420 (489)
57 1d2n_A N-ethylmaleimide-sensit 99.7 2.1E-17 7.3E-22 138.6 14.4 186 54-258 34-257 (272)
58 1ojl_A Transcriptional regulat 99.7 1.8E-16 6.1E-21 134.7 18.8 206 53-262 2-249 (304)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 9.3E-17 3.2E-21 153.2 18.2 217 39-262 172-430 (758)
60 3m6a_A ATP-dependent protease 99.7 4.5E-17 1.6E-21 148.9 15.4 208 53-266 81-342 (543)
61 2r62_A Cell division protease 99.7 4.8E-19 1.6E-23 148.3 2.0 206 46-266 4-254 (268)
62 1um8_A ATP-dependent CLP prote 99.7 1.3E-16 4.3E-21 140.1 16.3 205 54-264 22-364 (376)
63 2p65_A Hypothetical protein PF 99.7 2.4E-17 8.4E-22 129.9 9.9 156 40-201 9-187 (187)
64 1w5s_A Origin recognition comp 99.7 9.8E-16 3.4E-20 135.9 20.7 217 43-262 15-290 (412)
65 3pxi_A Negative regulator of g 99.7 1.6E-16 5.6E-21 151.3 16.1 185 53-247 491-721 (758)
66 1ixz_A ATP-dependent metallopr 99.7 6.8E-16 2.3E-20 128.1 17.7 205 46-262 9-253 (254)
67 3pxi_A Negative regulator of g 99.7 1.1E-16 3.6E-21 152.6 14.1 194 40-248 167-383 (758)
68 3cf2_A TER ATPase, transitiona 99.7 2.1E-16 7E-21 148.6 15.2 188 48-246 199-418 (806)
69 2dhr_A FTSH; AAA+ protein, hex 99.7 6.3E-16 2.2E-20 138.8 17.7 203 48-262 26-268 (499)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 5.5E-16 1.9E-20 147.9 18.2 183 53-248 458-713 (758)
71 3k1j_A LON protease, ATP-depen 99.7 2.2E-16 7.5E-21 146.5 12.6 219 43-263 31-373 (604)
72 1iy2_A ATP-dependent metallopr 99.7 8E-15 2.7E-19 123.2 20.4 203 48-262 35-277 (278)
73 1qvr_A CLPB protein; coiled co 99.7 3.3E-16 1.1E-20 150.9 12.0 194 53-248 558-817 (854)
74 3hws_A ATP-dependent CLP prote 99.6 6.6E-16 2.3E-20 134.8 8.5 204 54-263 16-347 (363)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.3E-14 4.5E-19 130.4 16.8 205 53-264 22-284 (500)
76 3cf2_A TER ATPase, transitiona 99.6 7.2E-16 2.5E-20 144.9 7.1 180 49-243 473-694 (806)
77 3n70_A Transport activator; si 99.6 1.4E-14 4.7E-19 109.6 11.0 132 54-200 2-144 (145)
78 2x8a_A Nuclear valosin-contain 99.6 2E-13 6.9E-18 114.1 19.0 173 49-231 6-211 (274)
79 2qen_A Walker-type ATPase; unk 99.6 2.8E-13 9.6E-18 117.3 19.4 185 51-245 10-248 (350)
80 3t15_A Ribulose bisphosphate c 99.6 8.8E-14 3E-18 117.6 15.4 150 75-237 37-221 (293)
81 1g41_A Heat shock protein HSLU 99.5 3.1E-13 1.1E-17 119.1 17.0 132 141-272 250-441 (444)
82 3co5_A Putative two-component 99.5 3.4E-14 1.1E-18 107.1 8.0 128 54-200 5-142 (143)
83 2fna_A Conserved hypothetical 99.5 3.8E-12 1.3E-16 110.4 18.9 183 51-245 11-252 (357)
84 3dzd_A Transcriptional regulat 99.5 2.1E-12 7.1E-17 112.5 16.7 192 54-250 130-361 (368)
85 3f9v_A Minichromosome maintena 99.5 1.1E-14 3.8E-19 134.2 1.7 205 53-262 295-584 (595)
86 1ypw_A Transitional endoplasmi 99.4 7.8E-13 2.7E-17 126.1 13.9 180 46-240 197-411 (806)
87 1ny5_A Transcriptional regulat 99.4 5.6E-12 1.9E-16 110.6 18.3 204 52-259 136-381 (387)
88 1ypw_A Transitional endoplasmi 99.4 3.9E-15 1.3E-19 141.9 -5.5 155 48-216 472-664 (806)
89 3ec2_A DNA replication protein 99.4 1.6E-12 5.4E-17 101.9 9.1 131 45-183 2-145 (180)
90 2w58_A DNAI, primosome compone 99.2 5.1E-11 1.7E-15 95.0 9.5 132 42-181 14-159 (202)
91 3upu_A ATP-dependent DNA helic 99.2 7.4E-11 2.5E-15 106.0 11.3 141 35-181 6-165 (459)
92 2kjq_A DNAA-related protein; s 99.2 3.8E-11 1.3E-15 90.8 7.1 100 73-192 35-139 (149)
93 2qgz_A Helicase loader, putati 99.1 9.6E-11 3.3E-15 99.5 8.1 132 42-181 113-258 (308)
94 1u0j_A DNA replication protein 99.1 2.3E-09 7.8E-14 87.9 14.4 138 60-222 88-259 (267)
95 1z6t_A APAF-1, apoptotic prote 99.1 2.5E-09 8.5E-14 99.2 15.8 185 48-246 119-331 (591)
96 1tue_A Replication protein E1; 99.0 7.9E-10 2.7E-14 86.6 8.7 119 59-199 42-178 (212)
97 4akg_A Glutathione S-transfera 99.0 3.3E-09 1.1E-13 111.0 14.5 145 65-215 1260-1433(2695)
98 3f8t_A Predicted ATPase involv 99.0 4E-09 1.4E-13 92.7 12.2 199 55-262 215-480 (506)
99 2a5y_B CED-4; apoptosis; HET: 99.0 9E-09 3.1E-13 94.5 15.2 183 49-242 125-336 (549)
100 4akg_A Glutathione S-transfera 98.9 9.2E-08 3.1E-12 100.4 20.7 167 61-247 634-837 (2695)
101 3sfz_A APAF-1, apoptotic pepti 98.9 1.1E-07 3.8E-12 95.3 19.7 187 48-246 119-331 (1249)
102 1vt4_I APAF-1 related killer D 98.7 4.5E-07 1.5E-11 87.1 17.1 172 56-244 131-335 (1221)
103 3vkg_A Dynein heavy chain, cyt 98.7 1.9E-07 6.4E-12 98.8 14.9 145 64-214 1296-1470(3245)
104 3vkg_A Dynein heavy chain, cyt 98.6 3.2E-06 1.1E-10 89.8 20.5 168 61-248 593-798 (3245)
105 2orw_A Thymidine kinase; TMTK, 98.6 7.2E-08 2.5E-12 75.3 5.9 114 76-192 5-130 (184)
106 1ye8_A Protein THEP1, hypothet 98.5 8E-07 2.8E-11 68.9 11.2 66 142-209 100-172 (178)
107 2r2a_A Uncharacterized protein 98.5 1.6E-07 5.3E-12 74.2 6.4 59 142-200 88-153 (199)
108 2vhj_A Ntpase P4, P4; non- hyd 98.3 4.4E-06 1.5E-10 70.2 10.2 65 77-155 126-196 (331)
109 2b8t_A Thymidine kinase; deoxy 98.3 3.3E-06 1.1E-10 67.7 9.2 96 76-179 14-124 (223)
110 2r8r_A Sensor protein; KDPD, P 98.3 1E-06 3.5E-11 70.3 5.7 159 76-241 8-202 (228)
111 3e1s_A Exodeoxyribonuclease V, 98.1 2.6E-06 8.8E-11 78.2 5.8 114 59-181 192-316 (574)
112 2j9r_A Thymidine kinase; TK1, 98.0 1.2E-05 4.2E-10 63.5 7.5 100 77-179 31-136 (214)
113 3cmu_A Protein RECA, recombina 98.0 2.5E-05 8.4E-10 80.2 10.6 48 64-111 1414-1464(2050)
114 1g5t_A COB(I)alamin adenosyltr 98.0 3.4E-05 1.2E-09 60.1 9.1 100 75-182 29-164 (196)
115 1w36_D RECD, exodeoxyribonucle 97.9 2.6E-05 9E-10 72.2 8.7 103 75-181 165-299 (608)
116 1xx6_A Thymidine kinase; NESG, 97.9 5.4E-06 1.8E-10 64.9 3.0 91 76-179 10-116 (191)
117 2orv_A Thymidine kinase; TP4A 97.8 0.00015 5.1E-09 57.9 10.2 99 77-180 22-125 (234)
118 1w4r_A Thymidine kinase; type 97.8 0.00014 4.7E-09 56.6 9.4 96 76-178 22-124 (195)
119 3kl4_A SRP54, signal recogniti 97.8 0.00017 5.8E-09 63.5 11.1 37 76-112 99-135 (433)
120 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00013 4.6E-09 58.6 9.6 24 76-99 25-48 (235)
121 2zr9_A Protein RECA, recombina 97.8 0.00021 7E-09 61.4 11.2 45 64-108 48-95 (349)
122 2cvh_A DNA repair and recombin 97.7 0.00046 1.6E-08 54.9 12.2 21 76-96 22-42 (220)
123 3dm5_A SRP54, signal recogniti 97.7 0.00039 1.3E-08 61.3 12.6 36 76-111 102-137 (443)
124 1xp8_A RECA protein, recombina 97.7 0.0003 1E-08 60.7 11.3 45 64-108 61-108 (366)
125 2i3b_A HCR-ntpase, human cance 97.7 0.00024 8.2E-09 55.4 9.4 24 76-99 3-26 (189)
126 1u94_A RECA protein, recombina 97.7 0.00013 4.5E-09 62.8 8.2 33 76-108 65-97 (356)
127 3hr8_A Protein RECA; alpha and 97.7 0.00034 1.2E-08 60.0 10.7 39 64-102 48-89 (356)
128 3crm_A TRNA delta(2)-isopenten 97.6 5E-05 1.7E-09 64.1 5.0 32 76-112 7-38 (323)
129 1n0w_A DNA repair protein RAD5 97.6 0.00063 2.1E-08 55.0 11.4 23 76-98 26-48 (243)
130 3gfo_A Cobalt import ATP-bindi 97.6 0.00034 1.2E-08 57.9 9.6 44 140-183 160-206 (275)
131 2fz4_A DNA repair protein RAD2 97.6 0.00054 1.8E-08 55.5 10.6 38 58-98 95-132 (237)
132 3zvl_A Bifunctional polynucleo 97.6 0.0002 6.7E-09 63.2 8.6 24 75-98 259-282 (416)
133 3lw7_A Adenylate kinase relate 97.6 0.0004 1.4E-08 53.0 9.3 22 76-98 3-24 (179)
134 2ehv_A Hypothetical protein PH 97.6 0.00022 7.5E-09 58.0 8.0 21 76-96 32-52 (251)
135 3jvv_A Twitching mobility prot 97.6 0.00097 3.3E-08 57.3 12.1 25 76-100 125-149 (356)
136 2dr3_A UPF0273 protein PH0284; 97.6 0.00065 2.2E-08 55.0 10.7 25 76-100 25-49 (247)
137 3e2i_A Thymidine kinase; Zn-bi 97.5 7E-05 2.4E-09 59.1 4.4 99 77-178 31-135 (219)
138 3rlf_A Maltose/maltodextrin im 97.5 0.00033 1.1E-08 60.6 9.0 43 140-182 150-195 (381)
139 4g1u_C Hemin import ATP-bindin 97.5 0.00041 1.4E-08 57.2 9.2 41 141-181 165-208 (266)
140 1ex7_A Guanylate kinase; subst 97.5 0.00039 1.3E-08 54.0 8.5 23 76-98 3-25 (186)
141 3dl0_A Adenylate kinase; phosp 97.5 0.0033 1.1E-07 49.9 14.3 23 76-98 2-24 (216)
142 3io5_A Recombination and repai 97.5 0.0014 4.8E-08 54.9 12.3 51 64-114 13-68 (333)
143 1vpl_A ABC transporter, ATP-bi 97.5 0.00034 1.2E-08 57.3 8.5 42 140-181 163-206 (256)
144 2olj_A Amino acid ABC transpor 97.5 0.00019 6.6E-09 59.0 6.8 42 140-181 176-219 (263)
145 3cmw_A Protein RECA, recombina 97.5 0.00024 8.1E-09 72.2 8.4 34 77-110 1085-1118(1706)
146 2it1_A 362AA long hypothetical 97.5 0.00055 1.9E-08 58.9 9.6 43 140-182 150-195 (362)
147 2iut_A DNA translocase FTSK; n 97.5 0.0075 2.6E-07 54.7 17.3 69 141-209 343-419 (574)
148 3tif_A Uncharacterized ABC tra 97.5 0.00054 1.9E-08 55.4 9.0 43 140-182 162-207 (235)
149 1v5w_A DMC1, meiotic recombina 97.5 0.0014 4.7E-08 56.2 11.8 51 64-114 110-166 (343)
150 3llm_A ATP-dependent RNA helic 97.5 0.00066 2.3E-08 54.8 9.4 22 75-96 77-98 (235)
151 3tui_C Methionine import ATP-b 97.4 0.00051 1.7E-08 59.0 8.9 43 140-182 180-225 (366)
152 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.0011 3.7E-08 54.4 10.7 26 75-100 5-30 (260)
153 1z47_A CYSA, putative ABC-tran 97.4 0.00059 2E-08 58.5 9.3 43 140-182 162-207 (355)
154 2eyu_A Twitching motility prot 97.4 0.00071 2.4E-08 55.6 9.5 25 75-99 26-50 (261)
155 1qhx_A CPT, protein (chloramph 97.4 0.00014 4.8E-09 56.0 5.0 23 76-98 5-27 (178)
156 2pcj_A ABC transporter, lipopr 97.4 0.0008 2.7E-08 53.9 9.6 42 140-181 157-200 (224)
157 1v43_A Sugar-binding transport 97.4 0.00065 2.2E-08 58.7 9.4 43 140-182 158-203 (372)
158 3fmo_B ATP-dependent RNA helic 97.4 0.0013 4.3E-08 55.3 11.0 41 141-181 235-277 (300)
159 3cmu_A Protein RECA, recombina 97.4 0.00049 1.7E-08 70.9 9.8 37 75-111 1082-1118(2050)
160 1t6n_A Probable ATP-dependent 97.4 0.0028 9.6E-08 50.3 12.6 40 141-180 158-199 (220)
161 2onk_A Molybdate/tungstate ABC 97.4 0.00056 1.9E-08 55.5 8.3 43 140-182 143-188 (240)
162 3trf_A Shikimate kinase, SK; a 97.4 0.00013 4.5E-09 56.5 4.4 25 74-98 5-29 (185)
163 1qde_A EIF4A, translation init 97.4 0.00086 2.9E-08 53.5 9.3 41 141-181 155-196 (224)
164 3d31_A Sulfate/molybdate ABC t 97.4 0.00024 8.4E-09 60.8 6.2 43 140-182 144-189 (348)
165 3fb4_A Adenylate kinase; psych 97.4 0.0037 1.3E-07 49.5 12.8 23 76-98 2-24 (216)
166 2nq2_C Hypothetical ABC transp 97.4 0.0015 5E-08 53.4 10.4 42 140-181 145-189 (253)
167 1g6h_A High-affinity branched- 97.4 0.0015 5.3E-08 53.4 10.5 44 140-183 170-215 (257)
168 1svm_A Large T antigen; AAA+ f 97.3 0.00094 3.2E-08 57.8 9.5 25 74-98 169-193 (377)
169 3kb2_A SPBC2 prophage-derived 97.3 0.0002 6.8E-09 54.6 4.8 23 76-98 3-25 (173)
170 1nrj_B SR-beta, signal recogni 97.3 0.0014 4.7E-08 52.0 9.9 104 73-183 11-132 (218)
171 2yyz_A Sugar ABC transporter, 97.3 0.00021 7.1E-09 61.5 5.2 43 140-182 150-195 (359)
172 1pzn_A RAD51, DNA repair and r 97.3 0.0028 9.4E-08 54.4 12.3 22 77-98 134-155 (349)
173 1ji0_A ABC transporter; ATP bi 97.3 0.00066 2.3E-08 55.1 7.8 42 140-181 156-199 (240)
174 3vaa_A Shikimate kinase, SK; s 97.3 0.0002 6.8E-09 56.3 4.6 25 74-98 25-49 (199)
175 3lda_A DNA repair protein RAD5 97.3 0.0025 8.6E-08 55.6 11.8 39 76-114 180-222 (400)
176 1cr0_A DNA primase/helicase; R 97.3 0.0021 7.1E-08 53.8 11.1 25 76-100 37-61 (296)
177 1kht_A Adenylate kinase; phosp 97.3 0.00032 1.1E-08 54.5 5.5 28 75-102 4-31 (192)
178 1nks_A Adenylate kinase; therm 97.3 0.00019 6.6E-09 55.8 4.2 28 76-103 3-30 (194)
179 3b6e_A Interferon-induced heli 97.3 0.00072 2.5E-08 53.5 7.7 24 75-98 49-72 (216)
180 2z43_A DNA repair and recombin 97.3 0.0016 5.6E-08 55.3 10.3 24 76-99 109-132 (324)
181 3foz_A TRNA delta(2)-isopenten 97.3 0.0024 8.3E-08 53.4 10.9 23 76-98 12-34 (316)
182 1vec_A ATP-dependent RNA helic 97.3 0.0016 5.5E-08 51.1 9.6 40 141-180 146-186 (206)
183 3h1t_A Type I site-specific re 97.3 0.0006 2E-08 63.0 8.0 42 58-100 183-224 (590)
184 2ff7_A Alpha-hemolysin translo 97.3 0.00071 2.4E-08 55.1 7.5 43 140-182 162-205 (247)
185 1g29_1 MALK, maltose transport 97.3 0.00076 2.6E-08 58.3 8.0 43 140-182 156-201 (372)
186 2yvu_A Probable adenylyl-sulfa 97.3 0.00021 7.1E-09 55.5 4.1 29 75-103 14-42 (186)
187 3nh6_A ATP-binding cassette SU 97.3 0.00015 5.2E-09 60.9 3.5 43 140-182 207-250 (306)
188 3iij_A Coilin-interacting nucl 97.2 0.00025 8.4E-09 54.7 4.3 24 75-98 12-35 (180)
189 3fvq_A Fe(3+) IONS import ATP- 97.2 0.0012 4.2E-08 56.6 8.9 43 140-182 155-200 (359)
190 2qi9_C Vitamin B12 import ATP- 97.2 0.00028 9.7E-09 57.5 4.6 38 144-181 154-193 (249)
191 3exa_A TRNA delta(2)-isopenten 97.2 0.00092 3.2E-08 56.0 7.7 24 75-98 4-27 (322)
192 2r6a_A DNAB helicase, replicat 97.2 0.0061 2.1E-07 54.3 13.5 23 77-99 206-228 (454)
193 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.0025 8.4E-08 54.3 10.4 37 61-99 160-196 (330)
194 1via_A Shikimate kinase; struc 97.2 0.00036 1.2E-08 53.5 4.7 23 76-98 6-28 (175)
195 3uie_A Adenylyl-sulfate kinase 97.2 0.00037 1.3E-08 54.8 4.8 28 72-99 23-50 (200)
196 2yz2_A Putative ABC transporte 97.2 0.0023 7.7E-08 52.7 9.7 43 140-182 155-199 (266)
197 3pey_A ATP-dependent RNA helic 97.2 0.0026 8.8E-08 55.2 10.7 38 141-178 145-184 (395)
198 1zuh_A Shikimate kinase; alpha 97.2 0.00033 1.1E-08 53.3 4.3 25 74-98 7-31 (168)
199 4eun_A Thermoresistant glucoki 97.2 0.00032 1.1E-08 55.1 4.3 26 73-98 28-53 (200)
200 2ga8_A Hypothetical 39.9 kDa p 97.2 0.0004 1.4E-08 59.2 5.1 35 64-98 14-48 (359)
201 3c8u_A Fructokinase; YP_612366 97.2 0.00049 1.7E-08 54.5 5.3 39 61-99 7-47 (208)
202 2ze6_A Isopentenyl transferase 97.2 0.00038 1.3E-08 57.0 4.7 23 76-98 3-25 (253)
203 1q0u_A Bstdead; DEAD protein, 97.2 0.0026 8.9E-08 50.6 9.6 40 141-180 150-190 (219)
204 2iyv_A Shikimate kinase, SK; t 97.1 0.00034 1.2E-08 54.1 4.2 24 75-98 3-26 (184)
205 3bor_A Human initiation factor 97.1 0.002 6.9E-08 52.0 9.0 41 141-181 173-214 (237)
206 1kag_A SKI, shikimate kinase I 97.1 0.00029 9.9E-09 53.9 3.7 23 76-98 6-28 (173)
207 2ius_A DNA translocase FTSK; n 97.1 0.011 3.7E-07 53.2 14.1 69 142-210 298-374 (512)
208 1rz3_A Hypothetical protein rb 97.1 0.00077 2.6E-08 53.0 5.9 43 60-102 5-50 (201)
209 1xjc_A MOBB protein homolog; s 97.1 0.00054 1.8E-08 52.2 4.7 37 74-110 4-40 (169)
210 1gvn_B Zeta; postsegregational 97.1 0.00082 2.8E-08 56.1 6.3 23 76-98 35-57 (287)
211 1kao_A RAP2A; GTP-binding prot 97.1 0.027 9.1E-07 41.9 14.4 22 76-97 5-26 (167)
212 2rhm_A Putative kinase; P-loop 97.1 0.00048 1.6E-08 53.6 4.5 23 76-98 7-29 (193)
213 1aky_A Adenylate kinase; ATP:A 97.1 0.00062 2.1E-08 54.3 5.2 25 74-98 4-28 (220)
214 2xau_A PRE-mRNA-splicing facto 97.1 0.0055 1.9E-07 58.3 12.3 23 75-97 110-132 (773)
215 3fht_A ATP-dependent RNA helic 97.1 0.005 1.7E-07 53.7 11.4 40 140-179 167-208 (412)
216 1kgd_A CASK, peripheral plasma 97.1 0.00046 1.6E-08 53.3 4.1 23 76-98 7-29 (180)
217 3t61_A Gluconokinase; PSI-biol 97.1 0.00041 1.4E-08 54.6 3.9 24 75-98 19-42 (202)
218 4b3f_X DNA-binding protein smu 97.1 0.0013 4.4E-08 61.5 7.8 43 58-102 191-233 (646)
219 1ly1_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 53.7 3.4 21 76-96 4-24 (181)
220 2qor_A Guanylate kinase; phosp 97.0 0.00042 1.4E-08 54.6 3.8 24 75-98 13-36 (204)
221 1e6c_A Shikimate kinase; phosp 97.0 0.0007 2.4E-08 51.7 4.9 23 76-98 4-26 (173)
222 2c95_A Adenylate kinase 1; tra 97.0 0.00052 1.8E-08 53.5 4.2 24 75-98 10-33 (196)
223 3bh0_A DNAB-like replicative h 97.0 0.0038 1.3E-07 52.7 9.9 40 62-102 55-96 (315)
224 1rif_A DAR protein, DNA helica 97.0 0.0074 2.5E-07 50.0 11.5 38 58-98 115-152 (282)
225 1y63_A LMAJ004144AAA protein; 97.0 0.00054 1.8E-08 53.1 4.1 24 74-97 10-33 (184)
226 1oxx_K GLCV, glucose, ABC tran 97.0 0.00086 2.9E-08 57.6 5.7 43 140-182 157-202 (353)
227 1hv8_A Putative ATP-dependent 97.0 0.0044 1.5E-07 53.1 10.3 39 141-179 147-186 (367)
228 2gxq_A Heat resistant RNA depe 97.0 0.0035 1.2E-07 49.1 8.9 41 141-181 144-185 (207)
229 1p9r_A General secretion pathw 97.0 0.0018 6.1E-08 56.9 7.7 50 51-101 145-194 (418)
230 2cdn_A Adenylate kinase; phosp 97.0 0.00094 3.2E-08 52.4 5.4 23 76-98 22-44 (201)
231 3ber_A Probable ATP-dependent 97.0 0.003 1E-07 51.4 8.5 41 141-181 186-227 (249)
232 2j37_W Signal recognition part 97.0 0.014 4.8E-07 52.4 13.4 36 76-111 103-138 (504)
233 3ney_A 55 kDa erythrocyte memb 97.0 0.00068 2.3E-08 53.0 4.3 25 74-98 19-43 (197)
234 3tau_A Guanylate kinase, GMP k 96.9 0.00063 2.2E-08 53.9 4.1 24 75-98 9-32 (208)
235 3cm0_A Adenylate kinase; ATP-b 96.9 0.00055 1.9E-08 52.9 3.7 23 76-98 6-28 (186)
236 2v3c_C SRP54, signal recogniti 96.9 0.0011 3.8E-08 58.5 6.0 36 76-111 101-136 (432)
237 1nn5_A Similar to deoxythymidy 96.9 0.00078 2.7E-08 53.4 4.6 30 75-104 10-39 (215)
238 3bc1_A RAS-related protein RAB 96.9 0.0042 1.4E-07 47.9 8.7 22 76-97 13-34 (195)
239 2wwf_A Thymidilate kinase, put 96.9 0.00073 2.5E-08 53.4 4.4 30 75-104 11-40 (212)
240 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.0072 2.5E-07 45.8 9.9 22 76-97 9-30 (177)
241 3dz8_A RAS-related protein RAB 96.9 0.0068 2.3E-07 46.8 9.9 22 77-98 26-47 (191)
242 1knq_A Gluconate kinase; ALFA/ 96.9 0.00067 2.3E-08 51.9 4.0 23 76-98 10-32 (175)
243 1z0j_A RAB-22, RAS-related pro 96.9 0.0032 1.1E-07 47.4 7.8 22 77-98 9-30 (170)
244 1zp6_A Hypothetical protein AT 96.9 0.00048 1.6E-08 53.6 3.1 23 75-97 10-32 (191)
245 3tlx_A Adenylate kinase 2; str 96.9 0.0012 4.1E-08 53.6 5.6 26 73-98 28-53 (243)
246 2plr_A DTMP kinase, probable t 96.9 0.00064 2.2E-08 53.7 3.9 26 76-101 6-31 (213)
247 2ged_A SR-beta, signal recogni 96.9 0.026 8.9E-07 43.4 13.2 23 75-97 49-71 (193)
248 2oxc_A Probable ATP-dependent 96.9 0.0068 2.3E-07 48.5 10.0 40 141-180 166-207 (230)
249 3t1o_A Gliding protein MGLA; G 96.9 0.0032 1.1E-07 48.7 7.9 22 77-98 17-38 (198)
250 1zak_A Adenylate kinase; ATP:A 96.9 0.00064 2.2E-08 54.3 3.8 24 75-98 6-29 (222)
251 4dkx_A RAS-related protein RAB 96.9 0.0076 2.6E-07 47.9 10.1 21 77-97 16-36 (216)
252 2pt5_A Shikimate kinase, SK; a 96.9 0.00076 2.6E-08 51.2 4.0 23 76-98 2-24 (168)
253 4gzl_A RAS-related C3 botulinu 96.9 0.00078 2.7E-08 53.0 4.2 41 57-97 13-53 (204)
254 1z2a_A RAS-related protein RAB 96.9 0.0027 9.2E-08 47.7 7.0 23 76-98 7-29 (168)
255 1ak2_A Adenylate kinase isoenz 96.9 0.0012 4.2E-08 53.2 5.3 24 75-98 17-40 (233)
256 1np6_A Molybdopterin-guanine d 96.9 0.0013 4.5E-08 50.4 5.2 38 74-111 6-43 (174)
257 3llu_A RAS-related GTP-binding 96.9 0.021 7E-07 44.3 12.2 22 76-97 22-43 (196)
258 1lvg_A Guanylate kinase, GMP k 96.9 0.00076 2.6E-08 53.0 3.8 24 75-98 5-28 (198)
259 2jaq_A Deoxyguanosine kinase; 96.9 0.00072 2.5E-08 53.1 3.7 23 76-98 2-24 (205)
260 2bwj_A Adenylate kinase 5; pho 96.9 0.00073 2.5E-08 52.8 3.7 24 75-98 13-36 (199)
261 3cmw_A Protein RECA, recombina 96.8 0.0035 1.2E-07 63.9 9.4 28 76-103 36-63 (1706)
262 1odf_A YGR205W, hypothetical 3 96.8 0.0018 6E-08 54.1 6.2 24 77-100 34-57 (290)
263 1tev_A UMP-CMP kinase; ploop, 96.8 0.00075 2.6E-08 52.5 3.7 23 76-98 5-27 (196)
264 1ukz_A Uridylate kinase; trans 96.8 0.00079 2.7E-08 52.9 3.8 23 76-98 17-39 (203)
265 2dyk_A GTP-binding protein; GT 96.8 0.015 5.1E-07 43.2 10.9 23 75-97 2-24 (161)
266 1ls1_A Signal recognition part 96.8 0.0065 2.2E-07 50.8 9.6 34 76-109 100-133 (295)
267 2vli_A Antibiotic resistance p 96.8 0.00047 1.6E-08 53.2 2.4 24 75-98 6-29 (183)
268 3qf4_B Uncharacterized ABC tra 96.8 0.00082 2.8E-08 62.1 4.4 44 140-183 508-552 (598)
269 2z0h_A DTMP kinase, thymidylat 96.8 0.0009 3.1E-08 52.2 4.1 27 77-103 3-29 (197)
270 3fho_A ATP-dependent RNA helic 96.8 0.004 1.4E-07 56.3 8.9 40 140-179 258-299 (508)
271 3tr0_A Guanylate kinase, GMP k 96.8 0.00097 3.3E-08 52.4 4.3 24 75-98 8-31 (205)
272 3be4_A Adenylate kinase; malar 96.8 0.001 3.4E-08 53.0 4.4 24 75-98 6-29 (217)
273 1zd8_A GTP:AMP phosphotransfer 96.8 0.00066 2.3E-08 54.5 3.3 24 75-98 8-31 (227)
274 3umf_A Adenylate kinase; rossm 96.8 0.00089 3E-08 53.3 4.0 24 75-98 30-53 (217)
275 3dkp_A Probable ATP-dependent 96.8 0.01 3.5E-07 47.9 10.5 40 141-180 175-219 (245)
276 3sr0_A Adenylate kinase; phosp 96.8 0.0011 3.9E-08 52.3 4.5 23 76-98 2-24 (206)
277 3ld9_A DTMP kinase, thymidylat 96.8 0.0014 4.9E-08 52.3 5.2 43 63-105 10-53 (223)
278 2bbw_A Adenylate kinase 4, AK4 96.8 0.00098 3.4E-08 54.2 4.3 25 74-98 27-51 (246)
279 3ly5_A ATP-dependent RNA helic 96.8 0.0046 1.6E-07 50.7 8.3 40 141-180 201-241 (262)
280 1z0f_A RAB14, member RAS oncog 96.8 0.0059 2E-07 46.3 8.5 23 76-98 17-39 (179)
281 3fmp_B ATP-dependent RNA helic 96.8 0.0064 2.2E-07 54.5 9.9 41 140-180 234-276 (479)
282 2ce2_X GTPase HRAS; signaling 96.8 0.0086 2.9E-07 44.6 9.3 23 76-98 5-27 (166)
283 2p5t_B PEZT; postsegregational 96.8 0.0012 4E-08 54.0 4.6 23 76-98 34-56 (253)
284 3clv_A RAB5 protein, putative; 96.8 0.0043 1.5E-07 48.2 7.7 22 76-97 9-30 (208)
285 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0014 4.9E-08 57.9 5.4 27 73-99 150-176 (473)
286 1u8z_A RAS-related protein RAL 96.8 0.0072 2.5E-07 45.2 8.8 22 76-97 6-27 (168)
287 3a00_A Guanylate kinase, GMP k 96.8 0.00094 3.2E-08 51.8 3.7 23 76-98 3-25 (186)
288 3lxw_A GTPase IMAP family memb 96.8 0.15 5.1E-06 41.2 17.1 22 76-97 23-44 (247)
289 3j16_B RLI1P; ribosome recycli 96.8 0.022 7.6E-07 52.5 13.3 42 140-181 238-281 (608)
290 3b5x_A Lipid A export ATP-bind 96.8 0.0026 8.9E-08 58.6 7.2 43 140-182 497-540 (582)
291 1qf9_A UMP/CMP kinase, protein 96.8 0.0011 3.9E-08 51.3 4.2 23 76-98 8-30 (194)
292 4a82_A Cystic fibrosis transme 96.8 0.00065 2.2E-08 62.5 3.1 44 140-183 494-538 (578)
293 2j41_A Guanylate kinase; GMP, 96.8 0.0011 3.7E-08 52.2 4.1 24 75-98 7-30 (207)
294 3vkw_A Replicase large subunit 96.8 0.0012 4E-08 58.1 4.5 92 77-180 164-269 (446)
295 2bdt_A BH3686; alpha-beta prot 96.7 0.00088 3E-08 52.0 3.3 22 76-97 4-25 (189)
296 1rj9_A FTSY, signal recognitio 96.7 0.0029 1E-07 53.1 6.7 29 75-103 103-131 (304)
297 1m7g_A Adenylylsulfate kinase; 96.7 0.0019 6.4E-08 51.2 5.3 28 72-99 23-50 (211)
298 2wsm_A Hydrogenase expression/ 96.7 0.0012 4.1E-08 52.6 4.1 44 56-99 12-55 (221)
299 2hf9_A Probable hydrogenase ni 96.7 0.003 1E-07 50.4 6.5 43 58-100 22-64 (226)
300 1cke_A CK, MSSA, protein (cyti 96.7 0.0012 4E-08 52.9 4.1 23 76-98 7-29 (227)
301 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 51.6 3.7 25 76-100 2-26 (195)
302 2pez_A Bifunctional 3'-phospho 96.7 0.0015 5.2E-08 50.2 4.5 25 76-100 7-31 (179)
303 2v54_A DTMP kinase, thymidylat 96.7 0.00099 3.4E-08 52.3 3.5 24 75-98 5-28 (204)
304 3iuy_A Probable ATP-dependent 96.7 0.014 4.9E-07 46.4 10.4 40 141-180 167-207 (228)
305 1s2m_A Putative ATP-dependent 96.7 0.02 6.8E-07 49.7 12.1 38 141-178 163-201 (400)
306 2pl3_A Probable ATP-dependent 96.7 0.01 3.4E-07 47.7 9.4 40 141-180 171-211 (236)
307 1e4v_A Adenylate kinase; trans 96.7 0.0014 4.8E-08 52.0 4.2 23 76-98 2-24 (214)
308 3eiq_A Eukaryotic initiation f 96.7 0.0066 2.2E-07 53.0 9.0 38 142-179 184-222 (414)
309 3qf4_A ABC transporter, ATP-bi 96.7 0.0062 2.1E-07 56.1 9.1 43 140-182 496-539 (587)
310 3con_A GTPase NRAS; structural 96.7 0.0064 2.2E-07 46.8 8.0 22 77-98 24-45 (190)
311 2xb4_A Adenylate kinase; ATP-b 96.7 0.0012 4E-08 52.9 3.7 23 76-98 2-24 (223)
312 3tkl_A RAS-related protein RAB 96.7 0.0097 3.3E-07 46.0 8.9 23 76-98 18-40 (196)
313 3p32_A Probable GTPase RV1496/ 96.6 0.004 1.4E-07 53.6 7.2 40 73-112 78-117 (355)
314 2oca_A DAR protein, ATP-depend 96.6 0.022 7.5E-07 51.4 12.3 38 58-98 115-152 (510)
315 3a8t_A Adenylate isopentenyltr 96.6 0.001 3.5E-08 56.3 3.2 24 75-98 41-64 (339)
316 1ek0_A Protein (GTP-binding pr 96.6 0.0073 2.5E-07 45.3 7.9 22 77-98 6-27 (170)
317 4a74_A DNA repair and recombin 96.6 0.0049 1.7E-07 49.2 7.2 23 77-99 28-50 (231)
318 2zpa_A Uncharacterized protein 96.6 0.0074 2.5E-07 55.8 9.0 82 75-162 193-276 (671)
319 1z06_A RAS-related protein RAB 96.6 0.012 4.2E-07 45.2 9.2 22 76-97 22-43 (189)
320 2bov_A RAla, RAS-related prote 96.6 0.01 3.5E-07 46.2 8.8 22 76-97 16-37 (206)
321 3fe2_A Probable ATP-dependent 96.6 0.0096 3.3E-07 48.0 8.8 41 140-180 175-216 (242)
322 2hup_A RAS-related protein RAB 96.6 0.01 3.5E-07 46.3 8.8 22 76-97 31-52 (201)
323 1s96_A Guanylate kinase, GMP k 96.6 0.0017 5.8E-08 51.8 4.1 23 76-98 18-40 (219)
324 3r20_A Cytidylate kinase; stru 96.6 0.0024 8.3E-08 51.3 5.0 23 76-98 11-33 (233)
325 1xti_A Probable ATP-dependent 96.6 0.015 5.1E-07 50.3 10.5 39 140-178 151-191 (391)
326 3b60_A Lipid A export ATP-bind 96.6 0.002 6.9E-08 59.3 5.1 43 140-182 497-540 (582)
327 3nwj_A ATSK2; P loop, shikimat 96.6 0.0024 8.1E-08 52.1 4.9 24 75-98 49-72 (250)
328 2a9k_A RAS-related protein RAL 96.6 0.01 3.5E-07 45.3 8.4 21 77-97 21-41 (187)
329 1zj6_A ADP-ribosylation factor 96.6 0.011 3.6E-07 45.5 8.5 25 72-96 14-38 (187)
330 1q57_A DNA primase/helicase; d 96.6 0.029 1E-06 50.6 12.6 32 77-108 245-277 (503)
331 3b85_A Phosphate starvation-in 96.6 0.00093 3.2E-08 52.9 2.3 23 75-97 23-45 (208)
332 2j0s_A ATP-dependent RNA helic 96.6 0.011 3.9E-07 51.5 9.7 38 141-178 179-217 (410)
333 1zbd_A Rabphilin-3A; G protein 96.6 0.0088 3E-07 46.6 8.0 22 76-97 10-31 (203)
334 1c1y_A RAS-related protein RAP 96.5 0.019 6.6E-07 42.8 9.7 22 76-97 5-26 (167)
335 1z6g_A Guanylate kinase; struc 96.5 0.0017 5.7E-08 51.8 3.7 24 75-98 24-47 (218)
336 1gtv_A TMK, thymidylate kinase 96.5 0.00057 1.9E-08 54.2 1.0 26 76-101 2-27 (214)
337 1r2q_A RAS-related protein RAB 96.5 0.012 4E-07 44.1 8.5 21 77-97 9-29 (170)
338 2bme_A RAB4A, RAS-related prot 96.5 0.0072 2.5E-07 46.3 7.3 23 76-98 12-34 (186)
339 2il1_A RAB12; G-protein, GDP, 96.5 0.0076 2.6E-07 46.6 7.5 21 77-97 29-49 (192)
340 1ky3_A GTP-binding protein YPT 96.5 0.0063 2.1E-07 46.3 6.9 23 76-98 10-32 (182)
341 3e70_C DPA, signal recognition 96.5 0.0041 1.4E-07 52.8 6.2 34 76-109 131-164 (328)
342 1wp9_A ATP-dependent RNA helic 96.5 0.014 4.7E-07 51.9 10.1 23 76-98 25-47 (494)
343 2oap_1 GSPE-2, type II secreti 96.5 0.006 2E-07 55.1 7.6 39 58-98 246-284 (511)
344 2ew1_A RAS-related protein RAB 96.5 0.0068 2.3E-07 47.5 7.1 23 76-98 28-50 (201)
345 2xgj_A ATP-dependent RNA helic 96.5 0.019 6.4E-07 56.3 11.6 61 33-96 61-123 (1010)
346 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0035 1.2E-07 48.2 5.3 21 77-97 10-30 (184)
347 1fuu_A Yeast initiation factor 96.5 0.013 4.3E-07 50.8 9.5 40 141-180 162-202 (394)
348 1znw_A Guanylate kinase, GMP k 96.5 0.0019 6.5E-08 51.0 3.8 24 75-98 21-44 (207)
349 2eyq_A TRCF, transcription-rep 96.5 0.034 1.1E-06 55.3 13.3 39 57-95 607-645 (1151)
350 4gp7_A Metallophosphoesterase; 96.5 0.0014 4.8E-08 50.1 2.9 18 76-93 11-28 (171)
351 4a1f_A DNAB helicase, replicat 96.5 0.0094 3.2E-07 50.7 8.2 46 63-108 34-80 (338)
352 1jql_B DNA polymerase III, del 96.5 0.056 1.9E-06 39.5 11.5 104 67-180 11-116 (140)
353 2v6i_A RNA helicase; membrane, 96.5 0.015 5.1E-07 51.4 9.8 23 75-97 3-26 (431)
354 1r8s_A ADP-ribosylation factor 96.5 0.032 1.1E-06 41.5 10.5 22 77-98 3-24 (164)
355 2p5s_A RAS and EF-hand domain 96.5 0.0086 2.9E-07 46.6 7.4 22 76-97 30-51 (199)
356 2q6t_A DNAB replication FORK h 96.5 0.035 1.2E-06 49.2 12.1 36 63-99 188-225 (444)
357 3q3j_B RHO-related GTP-binding 96.4 0.0045 1.6E-07 49.0 5.8 22 76-97 29-50 (214)
358 3asz_A Uridine kinase; cytidin 96.4 0.0018 6.3E-08 51.1 3.5 23 76-98 8-30 (211)
359 1yqt_A RNAse L inhibitor; ATP- 96.4 0.022 7.6E-07 51.8 11.0 43 140-182 175-219 (538)
360 4tmk_A Protein (thymidylate ki 96.4 0.005 1.7E-07 48.8 5.9 29 75-103 4-32 (213)
361 4edh_A DTMP kinase, thymidylat 96.4 0.0032 1.1E-07 50.0 4.8 30 76-105 8-37 (213)
362 2xxa_A Signal recognition part 96.4 0.02 6.7E-07 50.6 10.3 38 76-113 102-140 (433)
363 3d3q_A TRNA delta(2)-isopenten 96.4 0.0022 7.6E-08 54.4 4.0 23 76-98 9-31 (340)
364 2g6b_A RAS-related protein RAB 96.4 0.0088 3E-07 45.5 7.2 22 77-98 13-34 (180)
365 2erx_A GTP-binding protein DI- 96.4 0.015 5.2E-07 43.6 8.5 22 76-97 5-26 (172)
366 3q85_A GTP-binding protein REM 96.4 0.021 7.3E-07 42.7 9.3 20 76-95 4-23 (169)
367 2efe_B Small GTP-binding prote 96.4 0.012 4.1E-07 44.8 8.0 21 77-97 15-35 (181)
368 3tqc_A Pantothenate kinase; bi 96.4 0.0083 2.8E-07 50.7 7.5 23 77-99 95-117 (321)
369 1gwn_A RHO-related GTP-binding 96.4 0.0041 1.4E-07 48.9 5.3 23 76-98 30-52 (205)
370 2fh5_B SR-beta, signal recogni 96.4 0.02 6.8E-07 45.0 9.4 24 75-98 8-31 (214)
371 3lv8_A DTMP kinase, thymidylat 96.4 0.0047 1.6E-07 49.8 5.7 29 76-104 29-57 (236)
372 3tw8_B RAS-related protein RAB 96.4 0.002 6.9E-08 49.1 3.4 21 76-96 11-31 (181)
373 3ozx_A RNAse L inhibitor; ATP 96.4 0.012 4E-07 53.5 8.9 42 140-181 402-446 (538)
374 2f1r_A Molybdopterin-guanine d 96.4 0.0015 5E-08 50.0 2.5 39 75-113 3-41 (171)
375 3q72_A GTP-binding protein RAD 96.4 0.0053 1.8E-07 46.0 5.7 21 76-96 4-24 (166)
376 4e22_A Cytidylate kinase; P-lo 96.4 0.0024 8.3E-08 52.1 4.0 24 75-98 28-51 (252)
377 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0045 1.5E-07 47.4 5.4 21 77-97 8-28 (186)
378 1htw_A HI0065; nucleotide-bind 96.4 0.0021 7.2E-08 48.4 3.3 24 75-98 34-57 (158)
379 4eaq_A DTMP kinase, thymidylat 96.4 0.0031 1.1E-07 50.6 4.6 25 76-100 28-52 (229)
380 1vma_A Cell division protein F 96.4 0.0043 1.5E-07 52.1 5.5 34 77-110 107-140 (306)
381 2if2_A Dephospho-COA kinase; a 96.4 0.0018 6.1E-08 50.9 3.0 22 76-98 3-24 (204)
382 3reg_A RHO-like small GTPase; 96.4 0.0043 1.5E-07 48.1 5.2 22 77-98 26-47 (194)
383 2fg5_A RAB-22B, RAS-related pr 96.4 0.011 3.7E-07 45.7 7.5 22 76-97 25-46 (192)
384 1zd9_A ADP-ribosylation factor 96.4 0.022 7.7E-07 43.7 9.2 21 77-97 25-45 (188)
385 4dsu_A GTPase KRAS, isoform 2B 96.4 0.012 4.1E-07 45.0 7.7 22 77-98 7-28 (189)
386 3ake_A Cytidylate kinase; CMP 96.3 0.0036 1.2E-07 49.1 4.6 23 76-98 4-26 (208)
387 2grj_A Dephospho-COA kinase; T 96.3 0.0029 1E-07 49.3 3.9 22 77-98 15-36 (192)
388 1g8f_A Sulfate adenylyltransfe 96.3 0.0037 1.3E-07 56.2 5.0 44 57-100 376-421 (511)
389 1z08_A RAS-related protein RAB 96.3 0.0094 3.2E-07 44.8 6.7 22 76-97 8-29 (170)
390 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.4E-08 50.5 3.2 21 76-96 4-24 (206)
391 2j1l_A RHO-related GTP-binding 96.3 0.0074 2.5E-07 47.7 6.4 22 76-97 36-57 (214)
392 3lxx_A GTPase IMAP family memb 96.3 0.018 6.3E-07 46.2 8.7 22 76-97 31-52 (239)
393 2www_A Methylmalonic aciduria 96.3 0.0076 2.6E-07 51.7 6.6 29 74-102 74-102 (349)
394 3ozx_A RNAse L inhibitor; ATP 96.3 0.025 8.7E-07 51.3 10.3 42 140-181 155-197 (538)
395 1g16_A RAS-related protein SEC 96.3 0.008 2.7E-07 45.1 6.1 22 76-97 5-26 (170)
396 2va8_A SSO2462, SKI2-type heli 96.3 0.015 5.2E-07 54.9 9.2 21 75-95 47-67 (715)
397 2atx_A Small GTP binding prote 96.3 0.005 1.7E-07 47.7 5.0 22 76-97 20-41 (194)
398 3kkq_A RAS-related protein M-R 96.3 0.01 3.4E-07 45.4 6.7 21 77-97 21-41 (183)
399 1uf9_A TT1252 protein; P-loop, 96.3 0.0026 9E-08 49.7 3.4 23 75-97 9-31 (203)
400 1sq5_A Pantothenate kinase; P- 96.2 0.0082 2.8E-07 50.5 6.5 24 76-99 82-105 (308)
401 1tf7_A KAIC; homohexamer, hexa 96.2 0.012 4E-07 53.5 7.9 26 76-101 283-308 (525)
402 2nzj_A GTP-binding protein REM 96.2 0.016 5.3E-07 43.8 7.6 22 76-97 6-27 (175)
403 4f4c_A Multidrug resistance pr 96.2 0.0026 9E-08 64.1 3.9 25 74-98 444-468 (1321)
404 1uj2_A Uridine-cytidine kinase 96.2 0.0029 1E-07 51.6 3.5 23 76-98 24-46 (252)
405 2a5j_A RAS-related protein RAB 96.2 0.011 3.6E-07 45.7 6.7 21 77-97 24-44 (191)
406 2px0_A Flagellar biosynthesis 96.2 0.0052 1.8E-07 51.4 5.1 38 75-112 106-144 (296)
407 2y8e_A RAB-protein 6, GH09086P 96.2 0.0085 2.9E-07 45.4 5.9 21 77-97 17-37 (179)
408 2p6r_A Afuhel308 helicase; pro 96.2 0.024 8.3E-07 53.4 10.2 39 141-179 138-180 (702)
409 3pqc_A Probable GTP-binding pr 96.2 0.026 8.9E-07 43.3 8.8 23 75-97 24-46 (195)
410 2yl4_A ATP-binding cassette SU 96.2 0.011 3.9E-07 54.5 7.7 43 140-182 500-543 (595)
411 3l9o_A ATP-dependent RNA helic 96.2 0.021 7.1E-07 56.5 9.8 38 141-178 290-328 (1108)
412 3lnc_A Guanylate kinase, GMP k 96.2 0.0021 7.3E-08 51.6 2.5 24 75-98 28-52 (231)
413 2yc2_C IFT27, small RAB-relate 96.2 0.0078 2.7E-07 47.0 5.7 22 76-97 22-43 (208)
414 3b9q_A Chloroplast SRP recepto 96.2 0.0043 1.5E-07 52.0 4.4 25 77-101 103-127 (302)
415 2ffh_A Protein (FFH); SRP54, s 96.2 0.052 1.8E-06 47.6 11.3 35 76-110 100-134 (425)
416 3eph_A TRNA isopentenyltransfe 96.2 0.004 1.4E-07 54.0 4.2 23 76-98 4-26 (409)
417 2v9p_A Replication protein E1; 96.1 0.0048 1.6E-07 51.7 4.5 25 74-98 126-150 (305)
418 2qt1_A Nicotinamide riboside k 96.1 0.0026 8.9E-08 50.1 2.8 23 76-98 23-45 (207)
419 2gk6_A Regulator of nonsense t 96.1 0.011 3.9E-07 54.8 7.4 40 58-100 182-221 (624)
420 1ltq_A Polynucleotide kinase; 96.1 0.0031 1.1E-07 52.8 3.4 22 76-97 4-25 (301)
421 3t5g_A GTP-binding protein RHE 96.1 0.019 6.3E-07 43.7 7.6 22 76-97 8-29 (181)
422 2zj8_A DNA helicase, putative 96.1 0.014 4.9E-07 55.1 8.1 24 75-98 40-64 (720)
423 4f4c_A Multidrug resistance pr 96.1 0.0082 2.8E-07 60.5 6.7 44 140-183 1234-1278(1321)
424 2z0m_A 337AA long hypothetical 96.1 0.038 1.3E-06 46.6 10.1 38 141-178 129-167 (337)
425 3cph_A RAS-related protein SEC 96.1 0.014 4.9E-07 45.7 7.0 22 76-97 22-43 (213)
426 2fu5_C RAS-related protein RAB 96.1 0.0081 2.8E-07 45.9 5.3 21 77-97 11-31 (183)
427 2gf0_A GTP-binding protein DI- 96.1 0.014 4.9E-07 45.1 6.9 22 76-97 10-31 (199)
428 3bgw_A DNAB-like replicative h 96.1 0.035 1.2E-06 49.2 10.1 43 62-104 184-227 (444)
429 2oil_A CATX-8, RAS-related pro 96.1 0.014 4.9E-07 45.0 6.8 22 77-98 28-49 (193)
430 2qmh_A HPR kinase/phosphorylas 96.1 0.0023 7.8E-08 49.9 2.0 23 76-98 36-58 (205)
431 2whx_A Serine protease/ntpase/ 96.1 0.028 9.7E-07 52.0 9.7 39 140-178 276-315 (618)
432 1bif_A 6-phosphofructo-2-kinas 96.1 0.032 1.1E-06 49.9 9.8 25 76-100 41-65 (469)
433 2gks_A Bifunctional SAT/APS ki 96.0 0.0075 2.6E-07 54.9 5.6 45 58-102 354-400 (546)
434 3thx_A DNA mismatch repair pro 96.0 0.034 1.2E-06 53.7 10.4 21 76-96 664-684 (934)
435 3gj0_A GTP-binding nuclear pro 96.0 0.0072 2.5E-07 47.9 5.0 22 77-98 18-40 (221)
436 1svi_A GTP-binding protein YSX 96.0 0.11 3.7E-06 39.8 11.7 24 74-97 23-46 (195)
437 2o52_A RAS-related protein RAB 96.0 0.014 4.8E-07 45.5 6.5 22 76-97 27-48 (200)
438 2gco_A H9, RHO-related GTP-bin 96.0 0.01 3.5E-07 46.3 5.8 22 76-97 27-48 (201)
439 1a7j_A Phosphoribulokinase; tr 96.0 0.0021 7.2E-08 53.6 1.8 25 75-99 6-30 (290)
440 2jeo_A Uridine-cytidine kinase 96.0 0.0044 1.5E-07 50.3 3.7 23 76-98 27-49 (245)
441 2atv_A RERG, RAS-like estrogen 96.0 0.028 9.6E-07 43.5 8.2 22 76-97 30-51 (196)
442 3oes_A GTPase rhebl1; small GT 96.0 0.017 5.7E-07 45.0 6.9 23 76-98 26-48 (201)
443 3hjn_A DTMP kinase, thymidylat 96.0 0.0058 2E-07 47.8 4.2 29 77-105 3-31 (197)
444 3thx_B DNA mismatch repair pro 96.0 0.026 9E-07 54.4 9.4 22 76-97 675-696 (918)
445 3aez_A Pantothenate kinase; tr 96.0 0.0051 1.7E-07 51.9 4.1 25 76-100 92-116 (312)
446 1wrb_A DJVLGB; RNA helicase, D 96.0 0.088 3E-06 42.5 11.5 18 75-92 61-78 (253)
447 3j16_B RLI1P; ribosome recycli 96.0 0.026 8.8E-07 52.0 9.0 42 140-181 484-528 (608)
448 4dhe_A Probable GTP-binding pr 96.0 0.052 1.8E-06 42.8 9.8 24 74-97 29-52 (223)
449 1vht_A Dephospho-COA kinase; s 96.0 0.0043 1.5E-07 49.3 3.4 21 76-96 6-26 (218)
450 2i1q_A DNA repair and recombin 96.0 0.015 5.1E-07 49.2 6.9 35 64-98 86-122 (322)
451 2f7s_A C25KG, RAS-related prot 96.0 0.0098 3.4E-07 46.9 5.5 21 77-97 28-48 (217)
452 1x3s_A RAS-related protein RAB 96.0 0.011 3.7E-07 45.6 5.6 22 77-98 18-39 (195)
453 3bwd_D RAC-like GTP-binding pr 96.0 0.0055 1.9E-07 46.7 3.8 23 75-97 9-31 (182)
454 2fwr_A DNA repair protein RAD2 95.9 0.019 6.6E-07 51.2 7.8 38 58-98 95-132 (472)
455 1ksh_A ARF-like protein 2; sma 95.9 0.019 6.4E-07 44.0 6.8 23 75-97 19-41 (186)
456 1q3t_A Cytidylate kinase; nucl 95.9 0.0094 3.2E-07 48.0 5.3 24 75-98 17-40 (236)
457 2bcg_Y Protein YP2, GTP-bindin 95.9 0.011 3.7E-07 46.2 5.5 22 76-97 10-31 (206)
458 2j0v_A RAC-like GTP-binding pr 95.9 0.0067 2.3E-07 47.7 4.3 21 77-97 12-32 (212)
459 2ewv_A Twitching motility prot 95.9 0.005 1.7E-07 53.3 3.8 25 75-99 137-161 (372)
460 3cr8_A Sulfate adenylyltranfer 95.9 0.0053 1.8E-07 55.9 4.1 42 59-100 352-395 (552)
461 2cbz_A Multidrug resistance-as 95.9 0.0046 1.6E-07 49.9 3.3 44 140-183 144-191 (237)
462 2og2_A Putative signal recogni 95.9 0.0063 2.2E-07 52.2 4.3 25 77-101 160-184 (359)
463 3ice_A Transcription terminati 95.9 0.0097 3.3E-07 51.3 5.3 43 62-104 162-204 (422)
464 2q3h_A RAS homolog gene family 95.9 0.0074 2.5E-07 47.0 4.4 22 76-97 22-43 (201)
465 1fzq_A ADP-ribosylation factor 95.9 0.012 4.2E-07 45.0 5.5 22 76-97 18-39 (181)
466 1zu4_A FTSY; GTPase, signal re 95.9 0.0084 2.9E-07 50.7 4.8 33 77-109 108-140 (320)
467 3v9p_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 49.4 3.2 27 75-101 26-52 (227)
468 1vg8_A RAS-related protein RAB 95.8 0.0065 2.2E-07 47.5 3.9 23 76-98 10-32 (207)
469 3i5x_A ATP-dependent RNA helic 95.8 0.095 3.3E-06 47.8 12.1 17 74-90 111-127 (563)
470 2gza_A Type IV secretion syste 95.8 0.0059 2E-07 52.6 3.8 35 63-99 166-200 (361)
471 1b0u_A Histidine permease; ABC 95.8 0.0055 1.9E-07 50.3 3.4 42 140-181 170-213 (262)
472 1sgw_A Putative ABC transporte 95.8 0.0052 1.8E-07 48.8 3.1 23 76-98 37-59 (214)
473 2yhs_A FTSY, cell division pro 95.8 0.0075 2.6E-07 53.8 4.3 26 76-101 295-320 (503)
474 2h92_A Cytidylate kinase; ross 95.8 0.0092 3.2E-07 47.3 4.5 23 76-98 5-27 (219)
475 1nlf_A Regulatory protein REPA 95.8 0.0069 2.4E-07 50.1 3.8 25 75-99 31-55 (279)
476 2wjy_A Regulator of nonsense t 95.7 0.02 6.8E-07 54.6 7.4 40 58-100 358-397 (800)
477 1yks_A Genome polyprotein [con 95.7 0.04 1.4E-06 48.7 9.0 24 75-98 9-33 (440)
478 2zu0_C Probable ATP-dependent 95.7 0.0074 2.5E-07 49.6 3.9 43 140-182 181-225 (267)
479 2d2e_A SUFC protein; ABC-ATPas 95.7 0.007 2.4E-07 49.3 3.7 43 140-182 160-204 (250)
480 3g5u_A MCG1178, multidrug resi 95.7 0.0074 2.5E-07 60.7 4.5 42 140-181 543-585 (1284)
481 2pze_A Cystic fibrosis transme 95.7 0.0061 2.1E-07 48.9 3.2 43 140-182 147-191 (229)
482 1yrb_A ATP(GTP)binding protein 95.7 0.013 4.3E-07 47.9 5.2 35 77-112 17-51 (262)
483 2qm8_A GTPase/ATPase; G protei 95.7 0.011 3.9E-07 50.3 5.0 37 73-109 54-90 (337)
484 1z63_A Helicase of the SNF2/RA 95.7 0.067 2.3E-06 48.0 10.4 119 58-181 42-188 (500)
485 1ewq_A DNA mismatch repair pro 95.7 0.053 1.8E-06 51.3 9.9 23 76-98 578-600 (765)
486 2f9l_A RAB11B, member RAS onco 95.7 0.0068 2.3E-07 47.2 3.4 21 77-97 8-28 (199)
487 1m8p_A Sulfate adenylyltransfe 95.7 0.0087 3E-07 54.8 4.5 39 61-99 381-421 (573)
488 1mv5_A LMRA, multidrug resista 95.7 0.0059 2E-07 49.5 3.0 23 76-98 30-52 (243)
489 2ocp_A DGK, deoxyguanosine kin 95.7 0.006 2E-07 49.3 3.0 23 76-98 4-26 (241)
490 2fv8_A H6, RHO-related GTP-bin 95.7 0.011 3.6E-07 46.4 4.4 22 76-97 27-48 (207)
491 1oix_A RAS-related protein RAB 95.7 0.0063 2.1E-07 47.2 3.0 22 77-98 32-53 (191)
492 2ghi_A Transport protein; mult 95.6 0.0069 2.4E-07 49.6 3.3 44 140-183 172-216 (260)
493 2ixe_A Antigen peptide transpo 95.6 0.0069 2.4E-07 49.9 3.3 43 140-182 173-218 (271)
494 3sop_A Neuronal-specific septi 95.6 0.0073 2.5E-07 49.8 3.4 22 77-98 5-26 (270)
495 3kta_A Chromosome segregation 95.6 0.0068 2.3E-07 46.5 3.0 23 76-98 28-50 (182)
496 1gm5_A RECG; helicase, replica 95.6 0.036 1.2E-06 52.6 8.5 40 57-96 372-411 (780)
497 2f6r_A COA synthase, bifunctio 95.6 0.0067 2.3E-07 50.3 3.1 21 76-96 77-97 (281)
498 1j8m_F SRP54, signal recogniti 95.6 0.019 6.4E-07 48.0 5.8 36 76-111 100-135 (297)
499 3tqf_A HPR(Ser) kinase; transf 95.6 0.0071 2.4E-07 45.9 2.9 22 76-97 18-39 (181)
500 2z83_A Helicase/nucleoside tri 95.6 0.054 1.9E-06 48.2 9.2 24 75-98 22-46 (459)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=8.1e-35 Score=252.72 Aligned_cols=258 Identities=48% Similarity=0.835 Sum_probs=228.9
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...||.++|+|.+|++++|++..++.|...+..+..++++|+||+|+||||+++++++.+.+..+...+..++.++..+.
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI 90 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH
Confidence 46799999999999999999999999999999998888999999999999999999999987766677888888776667
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021959 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
+.+++.+..+...... ...++.|++|||+|.+....++.|++++++++.++.++++++....+.+++.+||..+.|.
T Consensus 91 ~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 7777766665543221 1123799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-----ccCHHHHHhhhCCCChhhHHHH
Q 021959 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-----QITEEAVYLCTGNPLPKDIEQI 273 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-----~i~~~~v~~~~~~~~~~~~~~l 273 (305)
+++.+++.+++...+..+++.+++++++.+++.++|++|.+++.++.++.... .|+.+.++++++......++++
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l 247 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAV 247 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999988899999999999999999999999999988876544 6999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHH-HHHHH
Q 021959 274 SYWLLNESFADSFKRIQNLSF-IIRLV 299 (305)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~l~~-~~~~~ 299 (305)
++++..+|+.+|+.++..+.. ....+
T Consensus 248 ~~~i~~~~~~~al~~l~~l~~~~g~~~ 274 (340)
T 1sxj_C 248 LKSILEDDWGTAHYTLNKVRSAKGLAL 274 (340)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999987 54433
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=4.1e-35 Score=252.42 Aligned_cols=253 Identities=41% Similarity=0.741 Sum_probs=223.7
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...||.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+.++...++.++++...+.
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 45789999999999999999999999999999888888999999999999999999999877666667888888776555
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021959 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
+.+...+.......++. ..++.+++|||+|.+..+.++.|++++++++.++.+|++++....+.+++.+||..+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~---~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~ 159 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (319)
T ss_dssp TTSSHHHHHHHHSCCSS---SCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHhcCCCC---CCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEec
Confidence 55555555554333221 234799999999999999999999999998888999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHH
Q 021959 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 278 (305)
+++.+++.+++...+.+.+..+++++++.+++.++||+|.+++.++.++...+.|+.++|.++++......++++++++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 239 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTAL 239 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHH
Q 021959 279 NESFADSFKRIQNLSF 294 (305)
Q Consensus 279 ~~~~~~~~~~l~~l~~ 294 (305)
.++..+++..+..+..
T Consensus 240 ~~~~~~a~~~l~~l~~ 255 (319)
T 2chq_A 240 KGNFMEARELLDRLMV 255 (319)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999999886
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.4e-34 Score=248.50 Aligned_cols=256 Identities=43% Similarity=0.769 Sum_probs=224.5
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...||.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+..+...++.+++....+.
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 35789999999999999999999999999999998888999999999999999999999866655566888887664444
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021959 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
+.+...+.......++. ..++.+|+|||+|.+..+.++.|++++++++.++.+|++++....+.+++.+||..+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 167 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 167 (327)
T ss_dssp HTTHHHHHHHHHSCCGG---GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred HHHHHHHHHHHhhCCcC---CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEec
Confidence 44455555544333222 134789999999999999999999999998888999999998888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHH
Q 021959 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 278 (305)
+++.+++.+++...+...++.+++++++.+++.++||+|.+++.++.++.....|+.+++....+.....+++.+++++.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 247 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL 247 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999998999999999999999999999999999999887777899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHH-HHHH
Q 021959 279 NESFADSFKRIQNLS-FIIR 297 (305)
Q Consensus 279 ~~~~~~~~~~l~~l~-~~~~ 297 (305)
.++...++..++.+. ..+.
T Consensus 248 ~~~~~~~~~~~~~ll~~~g~ 267 (327)
T 1iqp_A 248 KGNFLKAREKLREILLKQGL 267 (327)
T ss_dssp HTCHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHcCC
Confidence 999999999999887 5443
No 4
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=2e-33 Score=242.49 Aligned_cols=245 Identities=27% Similarity=0.395 Sum_probs=202.4
Q ss_pred CCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021959 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
.....+|.++|+|.+|++++|++..++.+..++..+..++ ++++||||+|||++++++++.+ ...++.++++..
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~ 84 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDC 84 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTC
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEccccc
Confidence 3567899999999999999999999999999999887776 6777889999999999999987 567888887663
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021959 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~ 194 (305)
+.+.++..+.......++.. ++.+|+|||+|.+. .+.++.|+.+++.++.++.+|++++....+.+++.+||..
T Consensus 85 -~~~~i~~~~~~~~~~~~~~~----~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 85 -KIDFVRGPLTNFASAASFDG----RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp -CHHHHHTHHHHHHHBCCCSS----CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred -CHHHHHHHHHHHHhhcccCC----CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 36667776766655544332 48999999999999 9999999999999988999999999999999999999999
Q ss_pred EEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCC
Q 021959 195 FRFAPLEPVH-------VTERLKHVIEAEGLDVTE-GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266 (305)
Q Consensus 195 i~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~ 266 (305)
+.|++|+.++ +.+++...+...++.+++ ++++.+++.++||+|.+++.|+.++ ..+.|+.++++.+...
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~-- 236 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTND-- 236 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC-----------
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCC--
Confidence 9999999877 445566667778999988 9999999999999999999999998 5667999999988776
Q ss_pred hhhHHHHHHHHHcccHHHHHHHHHHHHH
Q 021959 267 PKDIEQISYWLLNESFADSFKRIQNLSF 294 (305)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 294 (305)
...++.+++++..+++++++.++..+..
T Consensus 237 ~~~i~~~~~~~~~~~~~~a~~~~~~l~~ 264 (324)
T 3u61_B 237 RGAIDDVLESLKNKDVKQLRALAPKYAA 264 (324)
T ss_dssp ---CHHHHHHHHTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 5678899999999999999999998765
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.8e-33 Score=245.68 Aligned_cols=261 Identities=39% Similarity=0.647 Sum_probs=219.7
Q ss_pred CCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCC-CCcccEEEeecCCC
Q 021959 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDD 115 (305)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~ 115 (305)
.....||.++|+|.+|++++|+++.++.+..++..+..++++|+||+|+|||++++++++.+.++ .....+..+++...
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 44568999999999999999999999999999999887789999999999999999999987532 23456777887765
Q ss_pred cChhHHHHHHHHhhhccccc-------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhh
Q 021959 116 RGIDVVRQQIQDFASTQSFS-------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l 188 (305)
.+...+.+.+.......... .....++.+|+|||++.+....++.|++++++++.+.++|++++....+.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 101 RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp CCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 56666655555443321100 00123468999999999999999999999999988899999999988999999
Q ss_pred hcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccC------ccCHHHHHhhh
Q 021959 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVYLCT 262 (305)
Q Consensus 189 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~------~i~~~~v~~~~ 262 (305)
.+|+..+.|++++.+++..++...+...++.+++++++.|++.++||+|.+++.++.++...+ .|+.++|++++
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHh
Confidence 999999999999999999999999988899999999999999999999999999988776432 69999999999
Q ss_pred CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 021959 263 GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIR 297 (305)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 297 (305)
+......+..+++++..++.++++.+++.+.....
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~ 295 (353)
T 1sxj_D 261 GVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGW 295 (353)
T ss_dssp TCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99988999999999999999999999999876543
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1e-32 Score=237.88 Aligned_cols=251 Identities=41% Similarity=0.686 Sum_probs=219.5
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...||.++|+|..|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+..+...++.+++....+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 35789999999999999999999999999999988888999999999999999999999876666667888888776666
Q ss_pred hHHHHHHHHhhhcc-cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEe
Q 021959 119 DVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF 197 (305)
Q Consensus 119 ~~~~~~i~~~~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~ 197 (305)
+.+++.+..+.... .+ ...++.+|+|||+|.+....++.|++++++++.++.+|++++....+.+++.+||..+.|
T Consensus 87 ~~i~~~~~~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHL---PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHHHTHHHHHHHBCCCC---CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhccccC---CCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 77776666654221 11 022379999999999999999999999999988999999999988999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHH
Q 021959 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277 (305)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~ 277 (305)
++++.+++.+++...+...+..++++.++.+++.++||+|.+++.++.++...+.++.++|.++++......+++++++
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~- 242 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA- 242 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSC-
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhc-
Confidence 9999999999999999989999999999999999999999999999988876678999999999999988888888887
Q ss_pred HcccHHHHHHHHHH-HHHH
Q 021959 278 LNESFADSFKRIQN-LSFI 295 (305)
Q Consensus 278 ~~~~~~~~~~~l~~-l~~~ 295 (305)
++..+++.++.. +...
T Consensus 243 --~~~~~~l~~l~~dl~~~ 259 (323)
T 1sxj_B 243 --SNLEDSIQILRTDLWKK 259 (323)
T ss_dssp --SSHHHHHHHHHHTTTTT
T ss_pred --CCHHHHHHHHHHHHHHc
Confidence 788888888886 5443
No 7
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=2.4e-31 Score=233.83 Aligned_cols=256 Identities=20% Similarity=0.303 Sum_probs=218.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc--------------
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH-------------- 104 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~-------------- 104 (305)
..+|.++|+|..|++++|++..++.+...+..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999887666 7999999999999999999998653211
Q ss_pred -----ccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021959 105 -----NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 105 -----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
..++.++.......+.++..+....... ...++.||+|||+|.+....++.|++++++++.++.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC-----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhcc-----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 1345555544344455555555443221 223478999999999999999999999999888899999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021959 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
....+.+.+.+|+..+.|++++.+++.+++..++.+.|+.+++++++.+++.++||+|.+.+.++.+... .+.|+.++|
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v 237 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999877653 467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 021959 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVL 300 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~ 300 (305)
+++++......++++++++..++..+++..++.+...+..+.
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 279 (373)
T 1jr3_A 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 (373)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHH
Confidence 999999999999999999999999999999999987765554
No 8
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-31 Score=239.27 Aligned_cols=251 Identities=21% Similarity=0.300 Sum_probs=206.6
Q ss_pred CcchhhhcCCCCccccccchHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIV---DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
..||.++++|.+|++++|+++.+ ..|...+..+..++++|+||||||||++++.+++.+ ...++.+++.. .
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-----~~~f~~l~a~~-~ 86 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-----NADVERISAVT-S 86 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEETTT-C
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEEecc-C
Confidence 36999999999999999999999 799999999988889999999999999999999987 45677777654 4
Q ss_pred ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhcceeE
Q 021959 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTR 194 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~--~~~~~l~~~l~~r~~~ 194 (305)
+...++..+........ ..++.+|||||+|.+....++.|+..+++. .+.+|+++ +....+.+++.+|+.+
T Consensus 87 ~~~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 87 GVKEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp CHHHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred CHHHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeE
Confidence 56666666665443322 123689999999999999999999999974 46666666 3345788999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-------ccCHHHHHh
Q 021959 195 FRFAPLEPVHVTERLKHVIEA-------EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-------QITEEAVYL 260 (305)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-------~i~~~~v~~ 260 (305)
+.|++++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+.++..+. .|+.+++++
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~ 239 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTE 239 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHH
Confidence 999999999999999999886 456789999999999999999999999998876442 599999999
Q ss_pred hhCCCC----------hhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021959 261 CTGNPL----------PKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 261 ~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
++.... ++.++.++++++++|+++|+.++..|...+..|+++.
T Consensus 240 ~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~ 292 (447)
T 3pvs_A 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVA 292 (447)
T ss_dssp HHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 998763 3678899999999999999999999999988887653
No 9
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.5e-31 Score=232.14 Aligned_cols=245 Identities=29% Similarity=0.525 Sum_probs=189.4
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHH-hcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc---------------
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLT-SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--------------- 104 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l-~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--------------- 104 (305)
.+|.++|+|.+|++++|++..++.+..++ ..+..++++|+||+|+||||+++.+++.+.++...
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 47999999999999999999999999999 87777779999999999999999999977554321
Q ss_pred ---------ccEEEeecCCCcChh--HHHHHHHHhhhccccc-----CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021959 105 ---------NMILELNASDDRGID--VVRQQIQDFASTQSFS-----FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 105 ---------~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-----~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
..++.++........ .+++.+..+.....+. .+...++.+++|||++.++...++.|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 123344433221111 3455555544333221 011335789999999999999999999999998
Q ss_pred cCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Q 021959 169 TKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKALNILQSTH 247 (305)
Q Consensus 169 ~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~~~~ 247 (305)
+.++.+|++++....+.+++.+||..+.|++|+.+++.+++...+.++|+.++ +++++.|++.++||+|.+++.++.++
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999 99999999999999999999999888
Q ss_pred hccC-ccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHH
Q 021959 248 MASQ-QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFK 287 (305)
Q Consensus 248 ~~~~-~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 287 (305)
.... .|+.+.+ .........++++++++...+...++.
T Consensus 242 ~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~ 280 (354)
T 1sxj_E 242 LNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLI 280 (354)
T ss_dssp HTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHH
Confidence 7655 5776543 222223356788999988755444443
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.98 E-value=4.4e-30 Score=209.49 Aligned_cols=222 Identities=45% Similarity=0.799 Sum_probs=194.9
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...+|.++|+|..|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+.++...++.+++......
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 35789999999999999999999999999999887777999999999999999999999877666777888888776666
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021959 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
..+...+........+ ...++.+|+|||+|.+....++.|+.+++..+.+..+|++++....+.+.+.+|+..+.++
T Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 83 DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp HHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 6666666655443221 1234789999999999999999999999998888899999998888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhC
Q 021959 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~ 263 (305)
+++.+++.+++...+...+..++++.++.+++.++||+|.+++.++.++..++.|+.++|+++++
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhc
Confidence 99999999999999998899999999999999999999999999999988778899999998875
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=4.3e-27 Score=194.31 Aligned_cols=220 Identities=23% Similarity=0.389 Sum_probs=177.4
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc-------------
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH------------- 104 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~------------- 104 (305)
...+|.++|+|..|++++|++..++.+..++..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45789999999999999999999999999998876554 8999999999999999999988543211
Q ss_pred ------ccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021959 105 ------NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 105 ------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
..++.++.........+...+..... .....++.+|+|||+|.+....++.|+..+++.+.+..+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 12344443332223333333322211 1123447899999999999999999999999887788899999
Q ss_pred cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-CccCHHH
Q 021959 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEA 257 (305)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~ 257 (305)
+....+.+.+.+|+..+.+++++.+++.+++...+...+..++++.++.+++.++|++|.+.+.++.+...+ +.|+.++
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~ 243 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 243 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHH
Confidence 888888899999999999999999999999999999889899999999999999999999999998877643 5699999
Q ss_pred HHhhhC
Q 021959 258 VYLCTG 263 (305)
Q Consensus 258 v~~~~~ 263 (305)
|+++++
T Consensus 244 v~~~~~ 249 (250)
T 1njg_A 244 VSAMLG 249 (250)
T ss_dssp HHHHSC
T ss_pred HHHHhC
Confidence 998875
No 12
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=2e-27 Score=216.73 Aligned_cols=240 Identities=23% Similarity=0.383 Sum_probs=185.5
Q ss_pred CCCCCCCcchhhhcCCCCccccccchHHHHHHHHHHhcC-----------------CCCeEEEECCCCCcHHHHHHHHHH
Q 021959 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----------------RLPHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------------~~~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+......+|.++|+|.+|++++|++..++.+..++... ..+.++|+||||+|||++|+++++
T Consensus 20 ~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 20 GPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp ------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344567789999999999999999999999999998751 335699999999999999999999
Q ss_pred HHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccc----cC-----CCCCceEEEEEeCCCcCCHHHH---HHHHHH
Q 021959 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF----SF-----GVKASVKLVLLDEADAMTKDAQ---FALRRV 164 (305)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~-----~~~~~~~vliiDe~~~l~~~~~---~~l~~~ 164 (305)
.+ ...++.++++.......+...+......... .. ....++.||+|||+|.+....+ ..|.++
T Consensus 100 ~l-----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 100 EL-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp HT-----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred Hc-----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 97 5678888888766555444433322221111 11 1235678999999999976443 677777
Q ss_pred HHHhcCCceEEEEecCCc-ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021959 165 IEKYTKNTRFALICNQVN-KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 165 l~~~~~~~~iil~~~~~~-~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
++.. +..+|++++... ...+.+.+|+..+.|++|+.+++.+++...+.++++.+++++++.|++.++||+|.+++.|
T Consensus 175 l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 175 CRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 7764 455666665443 3446788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCccCHHHHHhhhC---CCChhhHHHHHHHHHcc
Q 021959 244 QSTHMASQQITEEAVYLCTG---NPLPKDIEQISYWLLNE 280 (305)
Q Consensus 244 ~~~~~~~~~i~~~~v~~~~~---~~~~~~~~~l~~~~~~~ 280 (305)
+.++...+.|+.+++++++. ......++++++.+...
T Consensus 253 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 253 STISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp THHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 99888778899999887765 44556788888888863
No 13
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.94 E-value=4.2e-26 Score=193.57 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=179.2
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCC-CcChhHHHHHHHHhhhcccc
Q 021959 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASD-DRGIDVVRQQIQDFASTQSF 134 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 134 (305)
||++.++.|.+.+..+..++++|+||+|+|||++++++++.+. +......+..++... ..+.+.+++.+..+.. .++
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~-~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNY-SPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTS-CCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhh-ccc
Confidence 6888999999999988866799999999999999999998642 222244677777664 4677788887666543 333
Q ss_pred cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHH
Q 021959 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214 (305)
Q Consensus 135 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 214 (305)
. .+++|+||||+|.+....+++|+++++++++++.+|++++.+.++.+++++| .+.|++++.+++.+++...+
T Consensus 80 ~----~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~- 152 (305)
T 2gno_A 80 L----YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI- 152 (305)
T ss_dssp S----SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH-
T ss_pred c----CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh-
Confidence 2 2379999999999999999999999999999999999999999999999999 99999999999999999887
Q ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc--------cCccCHHHHHhhhCCCChh--hHHHHHHHHHcccHHH
Q 021959 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--------SQQITEEAVYLCTGNPLPK--DIEQISYWLLNESFAD 284 (305)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--------~~~i~~~~v~~~~~~~~~~--~~~~l~~~~~~~~~~~ 284 (305)
+ ++++.+ +.+.||+|.+++.++..... ....+.++|+++++..... +++++++++..+|..+
T Consensus 153 --~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~ 224 (305)
T 2gno_A 153 --G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKE 224 (305)
T ss_dssp --T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred --C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHH
Confidence 3 555544 55799999999888632210 0112477888888887644 8999999999999999
Q ss_pred HHHHHHHHHHH
Q 021959 285 SFKRIQNLSFI 295 (305)
Q Consensus 285 ~~~~l~~l~~~ 295 (305)
|+..++.|...
T Consensus 225 a~~~~~~l~~~ 235 (305)
T 2gno_A 225 FFALFDQVTNT 235 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999983
No 14
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.94 E-value=3.2e-25 Score=191.56 Aligned_cols=222 Identities=22% Similarity=0.274 Sum_probs=171.7
Q ss_pred cchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc-------------------ccEEEeecC---
Q 021959 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH-------------------NMILELNAS--- 113 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~-------------------~~~~~~~~~--- 113 (305)
.+++..+.+...+..++.+| ++|+||+|+|||++++.+++.+.+.... ..+..++..
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence 45678889999999888877 9999999999999999999999775421 345666654
Q ss_pred CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhccee
Q 021959 114 DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (305)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~ 193 (305)
...+.+.+++.+..+...+ ..+++.|++|||+|.+..+.++.|++.+++++.++.+|++++....+.+++++||+
T Consensus 86 ~~~~i~~ir~l~~~~~~~~-----~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHA-----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCC-----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHhhcc-----ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 3355667776665543322 22347999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHH
Q 021959 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l 273 (305)
.+.|++++.+++.+++...+ .+++++++.+++.++|++|.+++.++........+..+.+..+... .++..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 232 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPS---GDWYSL 232 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---CCCGGG
T ss_pred eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhC---hHHHHH
Confidence 99999999999999998764 5789999999999999999999999766543344555666655541 122234
Q ss_pred HHHHHcccHHHHHHHHHH
Q 021959 274 SYWLLNESFADSFKRIQN 291 (305)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ 291 (305)
++.+...+....+.++..
T Consensus 233 ~~~l~~~~~~~~l~~l~~ 250 (334)
T 1a5t_A 233 LAALNHEQAPARLHWLAT 250 (334)
T ss_dssp HHHHCSTTHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHH
Confidence 455555555555554443
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=7.2e-25 Score=190.01 Aligned_cols=209 Identities=15% Similarity=0.203 Sum_probs=165.5
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.....|.++|+|.+|++++|++..++.+..++.. ...++++|+||+|||||++|+++++.+ ...++.+++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~~ 88 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-----SANIKTTAA 88 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEecc
Confidence 4556899999999999999999999999888874 344569999999999999999999986 445777777
Q ss_pred CCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcC------------------CceE
Q 021959 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK------------------NTRF 174 (305)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~------------------~~~i 174 (305)
........+...+... .++++|+|||++.+....+..|+..+++... .+.+
T Consensus 89 ~~~~~~~~~~~~~~~~-----------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 89 PMIEKSGDLAAILTNL-----------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp GGCCSHHHHHHHHHTC-----------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred hhccchhHHHHHHHhc-----------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 6655444444443321 2368999999999999999999999986431 2567
Q ss_pred EEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc----
Q 021959 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---- 249 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~---- 249 (305)
|.+++....+.+++.+|+ ..+.+++|+.+++..++...+...+..+++++++.+++.++|++|.+.+.++.+...
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 788888888999999999 889999999999999999999999988999999999999999999999999875432
Q ss_pred -cCccCHHHHHhhh
Q 021959 250 -SQQITEEAVYLCT 262 (305)
Q Consensus 250 -~~~i~~~~v~~~~ 262 (305)
...|+.+++..++
T Consensus 238 ~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 238 DEEIITEKRANEAL 251 (338)
T ss_dssp TCSEECHHHHHHHH
T ss_pred cCCccCHHHHHHHH
Confidence 3458888887655
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.93 E-value=1.8e-24 Score=189.65 Aligned_cols=225 Identities=16% Similarity=0.211 Sum_probs=166.3
Q ss_pred CCCCCcchhhhcCCCC-ccccccchHHHHH---HHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 36 PDIKASPWVEKYRPQS-LADVAAHRDIVDT---IDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 36 ~~~~~~~~~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
....+..+.++++|.. |++++|++..++. +...+..+..+ +++|+||||+|||++++++++.+.+. ..++.
T Consensus 26 ~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~ 102 (368)
T 3uk6_A 26 SHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTA 102 (368)
T ss_dssp TTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEE
T ss_pred hhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCccc
Confidence 3455677888999998 9999999999776 45555565544 69999999999999999999998432 23443
Q ss_pred eecCCC-------------------------------------------------------cChhHHHHHHHHhhhcccc
Q 021959 110 LNASDD-------------------------------------------------------RGIDVVRQQIQDFASTQSF 134 (305)
Q Consensus 110 ~~~~~~-------------------------------------------------------~~~~~~~~~i~~~~~~~~~ 134 (305)
+++... .....++..+.........
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 332210 0022233333322221111
Q ss_pred cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec------------CCcccchhhhcceeEEEecCCCH
Q 021959 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEP 202 (305)
Q Consensus 135 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~------------~~~~l~~~l~~r~~~i~~~~~~~ 202 (305)
.+.....++||||||+|.+..+.++.|++.+++.+... ++++++ ....+++++.+||..+.|++|+.
T Consensus 183 ~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~ 261 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSE 261 (368)
T ss_dssp HTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCH
T ss_pred hccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCH
Confidence 11111124699999999999999999999998776543 444443 24567899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHhhc-----cCccCHHHHHhhhCC
Q 021959 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCN-GDMRKALNILQSTHMA-----SQQITEEAVYLCTGN 264 (305)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~~ 264 (305)
+++.+++...+...+..+++++++.+++.+. |++|.+.+.|+.++.. ...|+.++|++++..
T Consensus 262 ~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 262 KDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999887653 246999999988765
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.92 E-value=1.5e-23 Score=180.67 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=164.7
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
+.++|+|.+|++++|++..++.+..++.. ....+++|+||+|+|||++|+++++.+ ...++.+++.....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~-----~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH-----TCCEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccccCC
Confidence 45689999999999999999988888763 234569999999999999999999987 34566677766544
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCceEEEEec
Q 021959 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICN 179 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~iil~~~ 179 (305)
...+...+.. ....+++|+|||++.+....+..|+..+++.. .++.+|++++
T Consensus 77 ~~~l~~~l~~----------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 77 PGDLAAILAN----------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp HHHHHHHHTT----------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred hHHHHHHHHH----------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 4443332221 01236899999999999999999999998753 2466888888
Q ss_pred CCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-----Ccc
Q 021959 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQI 253 (305)
Q Consensus 180 ~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-----~~i 253 (305)
....+.+++.+|+ ..+.+++|+.+++..++...+...+..+++++++.++++++|++|.+.+.++.+...+ ..|
T Consensus 147 ~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i 226 (324)
T 1hqc_A 147 RPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVI 226 (324)
T ss_dssp CCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCC
T ss_pred CcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8888899999999 6899999999999999999998888899999999999999999999999998776433 358
Q ss_pred CHHHHHhhh
Q 021959 254 TEEAVYLCT 262 (305)
Q Consensus 254 ~~~~v~~~~ 262 (305)
+.+++..+.
T Consensus 227 ~~~~~~~~~ 235 (324)
T 1hqc_A 227 TRERALEAL 235 (324)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888876654
No 18
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.92 E-value=3.3e-24 Score=186.17 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=186.2
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcc-cEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceE
Q 021959 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN-MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK 143 (305)
Q Consensus 65 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (305)
+.+.+.+...+.++|+||+|.||++.+..+++.+.+.++.. ..+.++. . ..+++.+..... .++.+ ++.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~~-~plf~----~~k 78 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQA-MSLFA----SRQ 78 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHHH-HHHCC----SCE
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhcC-cCCcc----CCe
Confidence 34444434455699999999999999999999886554322 3334432 2 233343333322 22222 279
Q ss_pred EEEEeCCCc-CCHHHHHHHHHHHHHhcCCceEEEEecCC------cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHc
Q 021959 144 LVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQV------NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 144 vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~iil~~~~~------~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
|++|||+|. +..+.++.|+++++++++++.+|++++.. .++.+++.+||+++.|.+++..++..|+...+.+.
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 999999999 99889999999999999999999988653 46788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHH
Q 021959 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSF 294 (305)
Q Consensus 217 ~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 294 (305)
|+.+++++++.+++.++||+|.+.+.|++++.. .+.|+.++|+++++.....+++++++++..+|..+++..++.+..
T Consensus 159 g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~ 238 (343)
T 1jr3_D 159 NLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 (343)
T ss_dssp TCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTT
T ss_pred CCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998874 457999999999998888999999999999999999999999887
Q ss_pred HHHHHHHhh
Q 021959 295 IIRLVLFVL 303 (305)
Q Consensus 295 ~~~~~~~~~ 303 (305)
.+..+..++
T Consensus 239 ~g~~~~~il 247 (343)
T 1jr3_D 239 EGSEPVILL 247 (343)
T ss_dssp TTCCHHHHH
T ss_pred CCCcHHHHH
Confidence 766665543
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.91 E-value=2.3e-23 Score=171.77 Aligned_cols=210 Identities=14% Similarity=0.209 Sum_probs=160.3
Q ss_pred CCcchhhhcCC-CCcccccc---chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 39 KASPWVEKYRP-QSLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 39 ~~~~~~~~~~p-~~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
...+|..+++| .+|+++++ +...++.+..++.....++++|+||+|+|||++++.+++.+...+.. +..+++..
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~--~~~~~~~~ 90 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERR--SFYIPLGI 90 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEEEGGG
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEHHH
Confidence 45678888888 68999997 35788888888887667779999999999999999999998655443 34444332
Q ss_pred CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH--HHHHHHHHHHhcCC-c-eEEEEecCCc----ccch
Q 021959 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYTKN-T-RFALICNQVN----KIIP 186 (305)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~--~~~l~~~l~~~~~~-~-~iil~~~~~~----~l~~ 186 (305)
... .+...+ . .-.++.+|+|||++.+.... +..|+.+++..... . .+|++++... ...+
T Consensus 91 ~~~--~~~~~~----~-------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 91 HAS--ISTALL----E-------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp GGG--SCGGGG----T-------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred HHH--HHHHHH----H-------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 110 000000 0 11236899999999997655 77888888765422 2 4777776433 3458
Q ss_pred hhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc----cCccCHHHHH
Q 021959 187 ALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVY 259 (305)
Q Consensus 187 ~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~ 259 (305)
.+.+|+ ..+.+++|+.+++.+++...+...+..+++++++.+++.++||+|.+.+.++.++.. .+.|+.++++
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~ 237 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVK 237 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 889998 899999999999999999999988999999999999999999999999999877653 3459999998
Q ss_pred hhhC
Q 021959 260 LCTG 263 (305)
Q Consensus 260 ~~~~ 263 (305)
+++.
T Consensus 238 ~~l~ 241 (242)
T 3bos_A 238 EMLR 241 (242)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.90 E-value=1.3e-21 Score=169.00 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=157.2
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHhcC-----CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.....|.+.++|.+|++++|++..++.+...+..+ ...+++|+||+|+||||+++.++..+. ..+...++
T Consensus 10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-----~~~~~~sg 84 (334)
T 1in4_A 10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ-----TNIHVTSG 84 (334)
T ss_dssp -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT-----CCEEEEET
T ss_pred HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEec
Confidence 34567899999999999999999999888877642 345699999999999999999999983 23334444
Q ss_pred CCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCceE
Q 021959 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRF 174 (305)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~i 174 (305)
........+...+... ..+.|++|||++.+.+...+.|+..++... +...+
T Consensus 85 ~~~~~~~~l~~~~~~~-----------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 85 PVLVKQGDMAAILTSL-----------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp TTCCSHHHHHHHHHHC-----------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred hHhcCHHHHHHHHHHc-----------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 3332333333222211 125799999999999877888877776431 12345
Q ss_pred EEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-----
Q 021959 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----- 248 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----- 248 (305)
+.+++....+.+.+++|+ ..+.|++++.+++.+++++.+...++.++++++..|++.+.|++|.+.+.|+.+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 556677788899999998 46899999999999999999988899999999999999999999999999976543
Q ss_pred ccCccCHHHHHhhhC
Q 021959 249 ASQQITEEAVYLCTG 263 (305)
Q Consensus 249 ~~~~i~~~~v~~~~~ 263 (305)
..+.|+.+.+++++.
T Consensus 234 ~~~~It~~~v~~al~ 248 (334)
T 1in4_A 234 KADRINTDIVLKTME 248 (334)
T ss_dssp TCSSBCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 235699998887764
No 21
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=8.9e-22 Score=176.86 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=108.3
Q ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe---------cC----CcccchhhhcceeEEEecCCCHHHHHHHH
Q 021959 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC---------NQ----VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 143 ~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~---------~~----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
+|++|||+|.+..+.++.|++.+++++.+ .+|+.+ +. +..+++++++||+.++|++++.+++.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999998877 566666 33 56788999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhh-----ccCccCHHHHHhhhCCCC
Q 021959 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM-----ASQQITEEAVYLCTGNPL 266 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~~~~ 266 (305)
+.++...+..++++++..+++.+ .|++|.++++++.+.. ....|+.++|+++++...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 99999899999999999999999 9999999999987643 235799999998876553
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.89 E-value=1e-21 Score=173.10 Aligned_cols=244 Identities=19% Similarity=0.242 Sum_probs=170.6
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHhCC----CCcccEEEeec
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNA 112 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~ 112 (305)
.+|...|.| ++++|++..++.+..++.. ...++++|+||+|+|||++++.+++.+... +....++.+++
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 345556666 6789999999999998853 345569999999999999999999987432 22456778887
Q ss_pred CCCcChhHHHHHHHHhhhcc-cc--------------cCCCCCceEEEEEeCCCcCCHH--HHHHHHHHHHHh-----cC
Q 021959 113 SDDRGIDVVRQQIQDFASTQ-SF--------------SFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKY-----TK 170 (305)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~-~~--------------~~~~~~~~~vliiDe~~~l~~~--~~~~l~~~l~~~-----~~ 170 (305)
........+...+....... +. ......++.+|+|||+|.+... .+..|..+++.. +.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence 66444332222211111000 00 0001234679999999999876 677888888754 44
Q ss_pred CceEEEEecCC---cccchhhhcce--eEEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCHHHHH
Q 021959 171 NTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDMRKAL 240 (305)
Q Consensus 171 ~~~iil~~~~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~---g~~r~~~ 240 (305)
+..+|++++.. ..+.+.+.+|+ ..+.|++++.+++.+++...+.. .+..+++++++.+++.+. ||+|.++
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHH
T ss_pred eEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHH
Confidence 66788888766 56788999998 68999999999999999998875 456789999999999998 9999999
Q ss_pred HHHHHHhhc-----cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHH
Q 021959 241 NILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQ 290 (305)
Q Consensus 241 ~~l~~~~~~-----~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 290 (305)
+.++.+... ...|+.+++.+++..... ..+.+.+.+-+..+...++.
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~---~~~~~~~~~l~~~~~~~l~a 298 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIER---DRVSEVVRTLPLHAKLVLLS 298 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH---HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh---chHHHHHHcCCHHHHHHHHH
Confidence 999877653 256999999887755422 23344445545444444433
No 23
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.88 E-value=5.6e-21 Score=168.55 Aligned_cols=222 Identities=19% Similarity=0.216 Sum_probs=161.8
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhc----CCCC--eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
..+|..+|.| ++++|++..++.+..++.. .... +++|+||+|+|||++++.+++.+.... ...++.+++.
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 3456677777 6789999999988888765 3333 799999999999999999999985442 3457777766
Q ss_pred CCcChhHHHHHHHHhhhcccccCC---------------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc----CCceE
Q 021959 114 DDRGIDVVRQQIQDFASTQSFSFG---------------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT----KNTRF 174 (305)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~----~~~~i 174 (305)
.......+...+...........+ ...++.+|+|||+|.+....+..|..+++..+ .+..+
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEE
Confidence 544333322222211111000000 01236799999999999888889989887644 37778
Q ss_pred EEEecCC---cccchhhhccee--EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---------CCCHHH
Q 021959 175 ALICNQV---NKIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLC---------NGDMRK 238 (305)
Q Consensus 175 il~~~~~---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~---------~g~~r~ 238 (305)
|++++.. ..+.+.+.+|+. .+.|+|++.+++.+++...+... ...+++++++.+++.+ +||+|.
T Consensus 163 I~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 163 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp EEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred EEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 8888776 456777778874 79999999999999999988752 2368999999999999 899999
Q ss_pred HHHHHHHHhhc-----cCccCHHHHHhhhCCC
Q 021959 239 ALNILQSTHMA-----SQQITEEAVYLCTGNP 265 (305)
Q Consensus 239 ~~~~l~~~~~~-----~~~i~~~~v~~~~~~~ 265 (305)
+++.++.++.. ...++.+++..+....
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999877652 3568888887665443
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=8.6e-21 Score=167.30 Aligned_cols=190 Identities=19% Similarity=0.234 Sum_probs=146.6
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.|.++++|..|++++|++..++.|..++.. ....+++|+||+|||||++|+++++.+ ...++.
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEE
Confidence 588889999999999999999999988731 234569999999999999999999986 557788
Q ss_pred eecCCCcC------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh----
Q 021959 110 LNASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---- 168 (305)
Q Consensus 110 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~---- 168 (305)
+++..... ...+...+..+... .++||||||+|.+. ...+..|+..++..
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 88765322 12222333222221 25899999999883 33455677777644
Q ss_pred cCCceEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021959 169 TKNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 169 ~~~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
+.++.+|.++|....+++.+.+|| ..+.++.|+.+++.+++..++...+..++++.+..+++.+.|..+..+..|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 235677778888889999999999 57999999999999999999988888899999999999999987766655543
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=8.9e-21 Score=162.98 Aligned_cols=197 Identities=16% Similarity=0.201 Sum_probs=145.5
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHh----------c--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTS----------E--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~----------~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
..|...+.+..|++++|++..++.|...+. . ....+++|+||||||||++|+++++.+ ...++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~ 80 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFF 80 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-----TCEEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-----CCCEE
Confidence 346778888899999999999999998872 1 123459999999999999999999997 45677
Q ss_pred EeecCCC--cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh---cCCc
Q 021959 109 ELNASDD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---TKNT 172 (305)
Q Consensus 109 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~---~~~~ 172 (305)
.+++... .........+........ ...++||+|||+|.+.. ..+..++..++.. ..++
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMAR-----ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHH-----HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHH-----hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 7766431 112222222222221111 11268999999998853 2356677777644 3355
Q ss_pred eEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHh
Q 021959 173 RFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 247 (305)
.+|.++|.+..+++++.+|| ..+.++.|+.+++.++++..+...+..+++..++.|++.+.| +.+.+.++++.++
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67778888889999999999 778999999999999999999888878899999999999987 5666666665544
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=4.2e-20 Score=157.15 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=154.6
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.|..++.+.+|++++|++..++.+...+.. ....+++|+||||||||++++++++.+ ...++.
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~ 84 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-----SATFLN 84 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEE
Confidence 366678888999999999999999888743 234569999999999999999999987 456777
Q ss_pred eecCCCcC------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHhcC--
Q 021959 110 LNASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYTK-- 170 (305)
Q Consensus 110 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~~~-- 170 (305)
+++..... ....+..+..... ..+++|+|||+|.+. ...+..|+..++..+.
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 77764321 1122222222211 126899999998884 3345567777776542
Q ss_pred ---CceEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHH
Q 021959 171 ---NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL-NILQS 245 (305)
Q Consensus 171 ---~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~-~~l~~ 245 (305)
++.+|.+++....+++.+.+|| ..+.++.|+.++...++...+...+..++++.++.+++.+.|..+..+ ++++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567778888888999999998 678999999999999999998888888899999999999999877555 44444
Q ss_pred Hhhcc-----------------CccCHHHHHhhhCCCC
Q 021959 246 THMAS-----------------QQITEEAVYLCTGNPL 266 (305)
Q Consensus 246 ~~~~~-----------------~~i~~~~v~~~~~~~~ 266 (305)
++..+ ..|+.+++..++....
T Consensus 236 a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 236 AALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 43211 2466777766665543
No 27
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.4e-20 Score=160.63 Aligned_cols=200 Identities=20% Similarity=0.279 Sum_probs=140.5
Q ss_pred CCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
...+|+++.|.++.++.|++.+.- ..+.+++||||||||||.+|+++|+++ ...++.++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHH
Confidence 345899999999999999887641 233459999999999999999999998 66788887765
Q ss_pred Cc--C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHh--cCCc
Q 021959 115 DR--G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKNT 172 (305)
Q Consensus 115 ~~--~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~ 172 (305)
.. . ...++..+..+.... ++||||||+|.+.. .....|+..++.. ..++
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~a---------P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHA---------PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTC---------SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred hhccccchHHHHHHHHHHHHHHhC---------CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 32 2 233444444433322 69999999999842 1234566666643 3356
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh
Q 021959 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 248 (305)
.+|.+||.++.+++++.+ |+ ..++|+.|+.+++.++++.++.+.++. ++..++.|++.+.| +...+.+++..++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 678889999999999988 77 789999999999999999887655432 12237889998876 44444455544443
Q ss_pred c-----cCccCHHHHHhhh
Q 021959 249 A-----SQQITEEAVYLCT 262 (305)
Q Consensus 249 ~-----~~~i~~~~v~~~~ 262 (305)
. ...|+.+++..++
T Consensus 368 ~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 368 YALRERRIHVTQEDFELAV 386 (405)
T ss_dssp HHHHTTCSBCCHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 2 2346666665554
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=5.5e-20 Score=159.88 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=139.3
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.+...+.+..|++++|++..++.|...+.. ....+++|+||||||||++|+++++.+ ...++.
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-----~~~~~~ 114 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFS 114 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEE
Confidence 345567788999999999999999988731 123359999999999999999999998 445666
Q ss_pred eecCCC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh---c
Q 021959 110 LNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---T 169 (305)
Q Consensus 110 ~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~---~ 169 (305)
+++... .....+...+..+.. ..++||||||+|.+.. ...+.|+..++.. .
T Consensus 115 v~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 115 VSSSDLVSKWMGESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp EEHHHHHSCC---CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred eeHHHHhhhhcchHHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 665421 112223333322211 1268999999999863 2356677777743 3
Q ss_pred CCceEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHh
Q 021959 170 KNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (305)
Q Consensus 170 ~~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 247 (305)
.++.+|.++|....+++++.+|| ..+.+++|+.+++.+++..++...+..+++..++.|++.+.| +.+.+.++++.++
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677778898889999999999 779999999999999999998877777889999999999988 5666666665544
Q ss_pred h
Q 021959 248 M 248 (305)
Q Consensus 248 ~ 248 (305)
.
T Consensus 266 ~ 266 (355)
T 2qp9_X 266 M 266 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=5.5e-21 Score=163.49 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=142.8
Q ss_pred ccccchHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC--cccEEEeecCCCc
Q 021959 54 DVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDDR 116 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~---------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~~~~ 116 (305)
+++|++..++.+...+. .....+++|+||||||||++|+++++.+...+. ...++.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 69999999998887764 233446999999999999999999999855432 3356666654321
Q ss_pred C--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC---------CHHHHHHHHHHHHHhcCCceEEEEecCCc---
Q 021959 117 G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQVN--- 182 (305)
Q Consensus 117 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l---------~~~~~~~l~~~l~~~~~~~~iil~~~~~~--- 182 (305)
. .......+....... .+++|+|||+|.+ ....++.|++++++.+.+..+|++++...
T Consensus 112 ~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHH
T ss_pred hhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHH
Confidence 1 111111122221111 1479999999988 67788999999998887888888885432
Q ss_pred --ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHhh
Q 021959 183 --KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (305)
Q Consensus 183 --~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 248 (305)
.+.+.+++|+ ..++|++|+.+++.+++..++.+.+..+++++++.+++++ .||+|.+.+.++.++.
T Consensus 184 ~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 3468999999 8999999999999999999999999999999999999863 4999999999987774
No 30
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=5e-21 Score=168.61 Aligned_cols=223 Identities=17% Similarity=0.139 Sum_probs=157.7
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHhCC-----CC-cccEE
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGA-----QY-HNMIL 108 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-----~~-~~~~~ 108 (305)
....|..+|.| ++++|++..++.+..++.. ..+++++|+||+|+|||++++.+++.+... +. ...++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 34567788888 6789999999988876653 445569999999999999999999987433 12 45677
Q ss_pred EeecCCCc-ChhHH-HHHHHHhhhccc-cc------------CCCCCceEEEEEeCCCcCCHHH-HHH-HHHHHHHhcCC
Q 021959 109 ELNASDDR-GIDVV-RQQIQDFASTQS-FS------------FGVKASVKLVLLDEADAMTKDA-QFA-LRRVIEKYTKN 171 (305)
Q Consensus 109 ~~~~~~~~-~~~~~-~~~i~~~~~~~~-~~------------~~~~~~~~vliiDe~~~l~~~~-~~~-l~~~l~~~~~~ 171 (305)
.+++.... ....+ ...+..+..... .. ......+.+|+|||+|.+.... ++. +..+++.. .+
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~ 164 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-AN 164 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SC
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cc
Confidence 77765432 22222 111222110000 00 0001112399999999997543 455 55555544 57
Q ss_pred ceEEEEecCC---cccchhhhcce-eEEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q 021959 172 TRFALICNQV---NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDMRKALNI 242 (305)
Q Consensus 172 ~~iil~~~~~---~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~---g~~r~~~~~ 242 (305)
..+|++++.. ..+.+.+.+|+ ..+.|++++.+++.+++...+.. .+..+++++++.+++.++ ||+|.+++.
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHH
Confidence 7888888776 56788888885 78999999999999999998875 345789999999999998 999999999
Q ss_pred HHHHhhcc---CccCHHHHHhhhCCC
Q 021959 243 LQSTHMAS---QQITEEAVYLCTGNP 265 (305)
Q Consensus 243 l~~~~~~~---~~i~~~~v~~~~~~~ 265 (305)
|+.+...+ ..|+.+++.+++...
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 98776543 469999988777554
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.86 E-value=8.5e-20 Score=158.94 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=142.1
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
+.+++.|.+|++++|++..++.|...+.. ....+++|+||+|||||++|+++++.+ ...++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEE
Confidence 34567788999999999999999988752 344569999999999999999999987 4567777
Q ss_pred ecCCCcC--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh----cCCce
Q 021959 111 NASDDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY----TKNTR 173 (305)
Q Consensus 111 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~----~~~~~ 173 (305)
++..... .......+....... ....+.+|||||+|.+.. ..++.|+..++.. ..++.
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVA-----RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHH-----HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ehHHhhccccchHHHHHHHHHHHH-----HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 7654321 112222222221111 011268999999988732 2345666666642 23566
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHh
Q 021959 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 247 (305)
+|.+++....+++.+.+|+ ..+.++.|+.++..+++...+...+..++++.++.+++.+.| ..+.+..+++.++
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778888888999999999 578999999999999999999888888999999999999988 4555555555444
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.85 E-value=2.2e-20 Score=166.66 Aligned_cols=217 Identities=11% Similarity=0.180 Sum_probs=154.9
Q ss_pred cCCC-Cccccc-c--chHHHHHHHHHHhcCC-CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021959 47 YRPQ-SLADVA-A--HRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 47 ~~p~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
+.|. +|++|+ | +......+...+.... .++++|+||+|+||||+++++++.+........++.+++... ...+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~ 175 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHH
Confidence 4444 688887 5 4445556666666543 566999999999999999999998855433445666654431 1111
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce--
Q 021959 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC-- 192 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~iil~~~~~~----~l~~~l~~r~-- 192 (305)
...+..... ..+.......+.+|+|||+|.+.. ..++.|+.+++... .+..+|++++... .+.+++.+|+
T Consensus 176 ~~~~~~~~~-~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~ 254 (440)
T 2z4s_A 176 VDSMKEGKL-NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_dssp HHHHHTTCH-HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS
T ss_pred HHHHHcccH-HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC
Confidence 111111000 000000001368999999999985 67888989888654 3456666776532 2678999998
Q ss_pred -eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc----cCccCHHHHHhhhCCCC
Q 021959 193 -TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPL 266 (305)
Q Consensus 193 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~~~~ 266 (305)
..+.+++|+.+++.+++...+...++.+++++++.|++.++||+|.+.+.|+.+... ...|+.+++++++....
T Consensus 255 g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 255 GLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999988999999999999999999999999999876653 34699999999887654
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-19 Score=157.97 Aligned_cols=200 Identities=20% Similarity=0.255 Sum_probs=139.0
Q ss_pred cCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 47 YRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
-...+|+++.|.++.++.|.+.+.. ..+.+++||||||||||.+|+++|+++ ...++.++++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~s 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIVGS 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEESG
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEEHH
Confidence 3445899999999999998887641 234459999999999999999999998 5677777766
Q ss_pred CCc--C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------H---HHHHHHHHHHHh--cCC
Q 021959 114 DDR--G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKY--TKN 171 (305)
Q Consensus 114 ~~~--~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~--~~~ 171 (305)
... . ...++..+..+.... ++||||||+|.+.. . ....|+..++.. ..+
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENA---------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTC---------SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred HhhhccCchHHHHHHHHHHHHHhcC---------CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 432 1 223344444433322 69999999998842 1 233455555543 245
Q ss_pred ceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Q 021959 172 TRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG-DMRKALNILQST 246 (305)
Q Consensus 172 ~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~ 246 (305)
+.+|.+||.++.+++++.+ |+ ..++|+.|+.+++.++++.++.+.+ ++++ .++.|++.+.| +...+.+++..+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6778889999999999998 77 6799999999999999998876554 3332 37888888865 344444455444
Q ss_pred hhc-----cCccCHHHHHhhh
Q 021959 247 HMA-----SQQITEEAVYLCT 262 (305)
Q Consensus 247 ~~~-----~~~i~~~~v~~~~ 262 (305)
+.. ...|+.+++..++
T Consensus 400 ~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 400 GLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHHcCCCccCHHHHHHHH
Confidence 332 2346666665544
No 34
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-19 Score=153.20 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=137.7
Q ss_pred cccchHHHHHHHHH----HhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCCCcChhHHHHHH
Q 021959 55 VAAHRDIVDTIDRL----TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 55 ~~g~~~~~~~l~~~----l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+.|++..++.+... +.++.+++++|+||||||||++++.+++.+.... ....++.++|....+...+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 77888777766544 4567777899999999999999999999985321 14578889987755443332222
Q ss_pred -HHhhhccc------------ccC--CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh---cCCceEEEEecCCc----c
Q 021959 126 -QDFASTQS------------FSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKY---TKNTRFALICNQVN----K 183 (305)
Q Consensus 126 -~~~~~~~~------------~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~iil~~~~~~----~ 183 (305)
.++..... |.. .....+.|++|||+|.+. .++.|+.+++.. ..+..+|++++..+ .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 22211000 000 123457899999999998 677888888743 23456666776654 2
Q ss_pred cchhhhcce--eEEEecCCCHHHHHHHHHHHHHHcCC-----------------------------------CCCHHHHH
Q 021959 184 IIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAEGL-----------------------------------DVTEGGLA 226 (305)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~ 226 (305)
+.+.+.+|+ ..+.|+|++.+++.+++..++....- .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 456667786 67999999999999999999876421 36899999
Q ss_pred HHHH---HcCCCHHHHHHHHHHHhhcc
Q 021959 227 ALVR---LCNGDMRKALNILQSTHMAS 250 (305)
Q Consensus 227 ~l~~---~~~g~~r~~~~~l~~~~~~~ 250 (305)
.+++ ..+||+|.|++.|+.+...+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 56899999999999887643
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=1.3e-19 Score=150.89 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=146.5
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
|.+++.+..|++++|.+..++.+...+.. ..+.+++|+||+|+|||++++++++.+ ...++.+
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~i 76 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTI 76 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEE
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCCEEEE
Confidence 77888899999999999999988776542 124459999999999999999999987 3346667
Q ss_pred ecCCCc------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHh--
Q 021959 111 NASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY-- 168 (305)
Q Consensus 111 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~-- 168 (305)
++.... ....+...+..... ..+++++|||+|.+.. .....++..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 77 SGSDFVEMFVGVGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp CSCSSTTSCCCCCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred eHHHHHHHhhhhhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 665421 12233333333322 1258999999977642 2334555556543
Q ss_pred cCCceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHH
Q 021959 169 TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG-DMRKALNIL 243 (305)
Q Consensus 169 ~~~~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l 243 (305)
+.++.+|.+++....+++.+.+ |+ ..+.+++|+.++..++++.++.+.+ ++++ ....++..+.| ++|.+.+.+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHH
Confidence 3356677778888888888877 66 6789999999999999988876544 3332 36778889999 999999998
Q ss_pred HHHhhc-----cCccCHHHHHhhhC
Q 021959 244 QSTHMA-----SQQITEEAVYLCTG 263 (305)
Q Consensus 244 ~~~~~~-----~~~i~~~~v~~~~~ 263 (305)
+.++.. ...|+.+++++++.
T Consensus 226 ~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 226 NEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHH
Confidence 776653 24588888876653
No 36
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-19 Score=159.28 Aligned_cols=202 Identities=18% Similarity=0.232 Sum_probs=140.5
Q ss_pred CCCCccccccchHHHHHHHHHHh------------c-CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTS------------E-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~------------~-~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.+.+|+++.|.++.++.|...+. + ..+.+++||||||||||++|+++|+++ ...++.++++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhh
Confidence 34589999999999999887643 1 234459999999999999999999998 56777777765
Q ss_pred Cc--C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HH---HHHHHHHHHHhc--CCc
Q 021959 115 DR--G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DA---QFALRRVIEKYT--KNT 172 (305)
Q Consensus 115 ~~--~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~---~~~l~~~l~~~~--~~~ 172 (305)
.. . ...++..+..+.... ++||||||+|.+.. .. ...|+..++... .++
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~a---------P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKA---------PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHC---------SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcC---------CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 32 2 223344443333322 69999999998721 12 234555555433 345
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh
Q 021959 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 248 (305)
.+|.+||.++.+++++.+ |+ ..++|+.|+.+++.++++.++.+....- +-.++.|++.+.| +...+.+++..++.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-DINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-CCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-cCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 677788999999999987 77 6799999999999999998888765421 1236788988876 44445555544433
Q ss_pred -----ccCccCHHHHHhhhCC
Q 021959 249 -----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 249 -----~~~~i~~~~v~~~~~~ 264 (305)
....|+.+++.+++..
T Consensus 401 ~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 401 IALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 2345788877766643
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.84 E-value=5.8e-19 Score=147.25 Aligned_cols=186 Identities=20% Similarity=0.185 Sum_probs=128.8
Q ss_pred CCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021959 49 PQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
+.+|++++|++..++.+.+.+.. ....+++|+||||||||++++++++.+ ...++.+++....
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHHHH
Confidence 35789999999999988877542 233459999999999999999999987 4456777766532
Q ss_pred C------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH------------HHHHHHHHHHH---H--hcCCce
Q 021959 117 G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIE---K--YTKNTR 173 (305)
Q Consensus 117 ~------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~---~--~~~~~~ 173 (305)
. ...+...+..+.. ..+.+|+|||+|.+.. ..+..+..+++ . .+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred hhccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 1 1222233332221 1258999999999842 22333444444 3 223566
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC-HHHHHHHHHHHhh
Q 021959 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGD-MRKALNILQSTHM 248 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~-~r~~~~~l~~~~~ 248 (305)
+|.+++....+++++.+ |+ ..+.+++|+.++..++++..+...+...+.+. ...+++.+.|. .+.+.++++.++.
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAAL 227 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 77778888888899988 88 78999999999999999999998887777654 47888888774 4566666666654
No 38
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.7e-19 Score=154.53 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=138.3
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021959 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..+|+++.|.++.++.|...+.. ..+.+++||||||||||++|+++|+++ ...++.++++..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhh
Confidence 34799999999999998887641 233459999999999999999999998 566777776643
Q ss_pred c--Ch----hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHhc--CCce
Q 021959 116 R--GI----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT--KNTR 173 (305)
Q Consensus 116 ~--~~----~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~~--~~~~ 173 (305)
. .. ..++..+..+... .++||||||+|.+.. .....|+..++... .++.
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~---------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH---------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS---------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred ccccchHHHHHHHHHHHHHHhc---------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 2 22 2233333333222 269999999998842 12345666666433 3567
Q ss_pred EEEEecCCcccchhhhcc--e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhhc
Q 021959 174 FALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMA 249 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 249 (305)
+|++||.++.+++++.++ + ..++|+.|+.+++.++++.++.+.... ++..++.+++.+.| +...+.+++..++..
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 888899999999999875 5 679999999999999999888765432 22236788988876 444444555444332
Q ss_pred -----cCccCHHHHHhhh
Q 021959 250 -----SQQITEEAVYLCT 262 (305)
Q Consensus 250 -----~~~i~~~~v~~~~ 262 (305)
...|+.+++.+++
T Consensus 402 air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 402 AIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHTTCSSBCHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHH
Confidence 2346666665544
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.9e-19 Score=151.33 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=139.7
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
.+.+.+|+++.|.+..++.|.+.+.. ..+.+++|+||||||||++|+++++.+. ...++.++++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 34566899999999999999887741 2234599999999999999999999862 2356666665
Q ss_pred CCc------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh---cCCce
Q 021959 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---TKNTR 173 (305)
Q Consensus 114 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~---~~~~~ 173 (305)
... ....++..+..+.. ..+++|||||+|.+. ....+.|+..++.. ..++.
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh---------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 421 22333443333322 126899999999983 12345667777653 34566
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHh
Q 021959 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTH 247 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~ 247 (305)
+|.++|.+..+++++.+|+ ..+.++.|+.++..++++..+...+..+++..++.|++.+.|- .+.+.++++.++
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778899999999999999 7899999999999999999988777778899999999999875 555555555554
No 40
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-19 Score=157.18 Aligned_cols=198 Identities=20% Similarity=0.294 Sum_probs=136.6
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021959 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
.+|+++.|.++.++.|++.+.- ..+.+++||||||||||++|+++|+++ ...++.++++...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhh
Confidence 4799999999999999877531 234559999999999999999999998 5677777776532
Q ss_pred --C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------H---HHHHHHHHHHHh--cCCceE
Q 021959 117 --G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKY--TKNTRF 174 (305)
Q Consensus 117 --~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~--~~~~~i 174 (305)
. ...++..+..+.... ++||||||+|.+.. . ....++..++.. ..++.+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKK---------ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTC---------SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcC---------CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 1 223444444433322 69999999998842 1 223444555533 235567
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh--
Q 021959 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM-- 248 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-- 248 (305)
|.+||.++.+++++.+ || ..++|+.|+.+++.++++.++....+.- +-.++.|++.+.| +...+.+++..++.
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dvdl~~LA~~T~GfSGADI~~l~~eAa~~A 430 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISRLCPNSTGAELRSVCTEAGMFA 430 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999988 88 7899999999999999998876554321 1236788888876 34444444544433
Q ss_pred ---ccCccCHHHHHhhh
Q 021959 249 ---ASQQITEEAVYLCT 262 (305)
Q Consensus 249 ---~~~~i~~~~v~~~~ 262 (305)
....++.+++..++
T Consensus 431 ir~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 431 IRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHTCSSBCHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHH
Confidence 22346666665543
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=6.7e-20 Score=156.68 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=144.7
Q ss_pred cccccchHHHHHHHHHHhc--------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC-
Q 021959 53 ADVAAHRDIVDTIDRLTSE--------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG- 117 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~- 117 (305)
+.++|++..++.+...+.. ..+.+++|+||||||||++++++++.+ ...++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-----~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEcchhcccC
Confidence 3589999999998887754 234569999999999999999999998 34566666654221
Q ss_pred -------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH------------HHHHHHHHHHh----------
Q 021959 118 -------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA------------QFALRRVIEKY---------- 168 (305)
Q Consensus 118 -------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~------------~~~l~~~l~~~---------- 168 (305)
...+...+...... +. ...+++||+|||+|.+.... ++.|+.+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~ 165 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGA--ID--AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK 165 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTC--HH--HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEE
T ss_pred CccCccHHHHHHHHHHHhhHH--Hh--hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccccccc
Confidence 11122222211000 00 00126899999999997554 78899999863
Q ss_pred cCCceEEEEe----cCCcccchhhhcce-eEEEecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHH
Q 021959 169 TKNTRFALIC----NQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKH-----------VIEAEG--LDVTEGGLAALVR 230 (305)
Q Consensus 169 ~~~~~iil~~----~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~~l~~ 230 (305)
..+..+|+++ +....+.+++.+|+ ..+.|++|+.+++.+++.. .+...+ ..+++++++.|++
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 2345566663 34567889999999 5699999999999998872 222344 3689999999999
Q ss_pred Hc--------CCCHHHHHHHHHHHhh-----c---cC---ccCHHHHHhhhCCC
Q 021959 231 LC--------NGDMRKALNILQSTHM-----A---SQ---QITEEAVYLCTGNP 265 (305)
Q Consensus 231 ~~--------~g~~r~~~~~l~~~~~-----~---~~---~i~~~~v~~~~~~~ 265 (305)
.+ .||+|.+.+.++.+.. . .+ .|+.++|+++++..
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 88 7999999999987652 1 11 38999999888754
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=1.9e-19 Score=152.10 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=141.5
Q ss_pred CCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.+..|++++|++..++.|...+.. ....+++|+||||||||++++++++.+ ...++.+++..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~~~~ 86 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVVGSE 86 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEEGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehHH
Confidence 345789999999999999888753 345569999999999999999999987 44566665543
Q ss_pred Cc--ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC-----------CHHHHHHHHHHHHHh-----cCCceEEE
Q 021959 115 DR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-----------TKDAQFALRRVIEKY-----TKNTRFAL 176 (305)
Q Consensus 115 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~iil 176 (305)
.. ........+........ ...++||+|||+|.+ ....+..+..+++.. ..++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAK-----EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHH-----HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEE
T ss_pred HHHhccchHHHHHHHHHHHHH-----HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 21 12222222222211110 112589999999987 345566676666643 23567777
Q ss_pred EecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh----
Q 021959 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM---- 248 (305)
Q Consensus 177 ~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~---- 248 (305)
+++....+++.+.+ |+ ..+.+++|+.++..++++..+...+.. .+..+..++..+.| +.+.+..++..+..
T Consensus 162 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp ECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 88888889999988 87 579999999999999999887665543 22346778888876 55555555554443
Q ss_pred -ccCccCHHHHHhhhC
Q 021959 249 -ASQQITEEAVYLCTG 263 (305)
Q Consensus 249 -~~~~i~~~~v~~~~~ 263 (305)
....|+.+++.+++.
T Consensus 241 ~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVE 256 (285)
T ss_dssp TTCSSBCHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHH
Confidence 224588888877664
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=8.1e-20 Score=157.27 Aligned_cols=204 Identities=14% Similarity=0.176 Sum_probs=143.0
Q ss_pred Cccccc-c--chHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH
Q 021959 51 SLADVA-A--HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+|++|+ | +......+..++... ..++++|+||+|+|||++++++++.+... ...++.+++... ...+...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~~ 84 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEHL 84 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHHH
Confidence 567776 3 555566777777664 34569999999999999999999988544 334555554321 11111111
Q ss_pred HHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce---eEE
Q 021959 126 QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC---TRF 195 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~iil~~~~~~----~l~~~l~~r~---~~i 195 (305)
..... ..+.. ...++.+|+|||+|.+.. ..++.++.+++... .+..++++++... .+.+++.+|+ ..+
T Consensus 85 ~~~~~-~~~~~-~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 85 KKGTI-NEFRN-MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp HHTCH-HHHHH-HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred HcCcH-HHHHH-HhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 11000 00000 001258999999999985 66778888887543 3456666665432 4788999998 789
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc---------cCcc-CHHHHHhhh
Q 021959 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---------SQQI-TEEAVYLCT 262 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~---------~~~i-~~~~v~~~~ 262 (305)
.++| +.+++.+++...+...++.+++++++.|++.+ ||+|.+.+.++.++.. ...| +.+++.+++
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~ 237 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFV 237 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHH
Confidence 9999 99999999999999999999999999999999 9999999999877655 1236 667766654
No 44
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-18 Score=152.66 Aligned_cols=198 Identities=20% Similarity=0.260 Sum_probs=138.5
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021959 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
.+|+++.|.+..++.|...+.. ..+.+++||||||||||++|+++|+++ ...++.++++...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhh
Confidence 4799999999999988887641 233459999999999999999999998 5677777776532
Q ss_pred --C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHhc--CCceE
Q 021959 117 --G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT--KNTRF 174 (305)
Q Consensus 117 --~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~~--~~~~i 174 (305)
. ...++..+..+.... ++||+|||+|.+.. .....|+..++... .++.+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~a---------P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENA---------PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTC---------SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred ccccchhHHHHHHHHHHHHHcC---------CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 1 233444444433322 69999999987621 23456777777543 35677
Q ss_pred EEEecCCcccchhhhc--ce-eEEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh-
Q 021959 175 ALICNQVNKIIPALQS--RC-TRFRFA-PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM- 248 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~- 248 (305)
|++||.++.+++++.+ |+ ..+.|+ .|+.+++..+++.++.+.+.. ++..++.|++.+.| +...+.++++.++.
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 8889999999999988 67 568896 688899999998888755432 12237888888866 44444455544433
Q ss_pred ----ccCccCHHHHHhhh
Q 021959 249 ----ASQQITEEAVYLCT 262 (305)
Q Consensus 249 ----~~~~i~~~~v~~~~ 262 (305)
....|+.+++.+++
T Consensus 394 a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHTTCSSBCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHH
Confidence 22457777776654
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.82 E-value=4.9e-19 Score=158.26 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=141.0
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHh------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
+...+.+..|++++|++..++.|...+. .....+++|+||||||||++|+++++.+. ...++.+
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v 199 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSI 199 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEE
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEE
Confidence 3445677899999999999999998873 12335699999999999999999999862 2356666
Q ss_pred ecCCCc------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh---cC
Q 021959 111 NASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---TK 170 (305)
Q Consensus 111 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~---~~ 170 (305)
+++... ....++..+..+.. ..++||||||+|.+. ....+.|+..++.. +.
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 665421 11223333333221 126899999999983 23445566666542 34
Q ss_pred CceEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh
Q 021959 171 NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (305)
Q Consensus 171 ~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 248 (305)
++.+|.++|.+..+++++.+|| ..+.++.|+.+++..++...+...+..+++..++.|++.+.| +.+.+.++++.++.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALM 350 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778888899999999999999 689999999999999999988777767889999999999988 55566666655543
No 46
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.4e-19 Score=159.25 Aligned_cols=215 Identities=21% Similarity=0.324 Sum_probs=148.8
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-cccEEEeecCCC
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~ 115 (305)
.+|...|.| ++++|++..++.+..++.. .....++|+||+|+|||++++.+++.+..... ...++.+++...
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 345555665 6789999999999998873 44456999999999999999999998743311 334555554321
Q ss_pred cC----------------------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH----HHHHHHHHHHHHh-
Q 021959 116 RG----------------------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKY- 168 (305)
Q Consensus 116 ~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----~~~~~l~~~l~~~- 168 (305)
.. ...+...+...... ...+.+|+|||++.+.. +....|++.++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVN 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcC
Confidence 11 11212222222111 12268999999999863 3344455555432
Q ss_pred cCCceEEEEecCC---cccchhhhcce--eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC---CCHHH
Q 021959 169 TKNTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLCN---GDMRK 238 (305)
Q Consensus 169 ~~~~~iil~~~~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~---g~~r~ 238 (305)
..+..+|++++.. ..+.+.+.+|+ ..+.|++++.+++.+++...+... ...+++++++.+++.+. |++|.
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHH
Confidence 3356677777765 35667788887 689999999999999999887643 35689999999999998 99999
Q ss_pred HHHHHHHHhhc-----cCccCHHHHHhhhCCC
Q 021959 239 ALNILQSTHMA-----SQQITEEAVYLCTGNP 265 (305)
Q Consensus 239 ~~~~l~~~~~~-----~~~i~~~~v~~~~~~~ 265 (305)
+++.++.++.. ...|+.++++.++...
T Consensus 241 ~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 241 ALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999876652 2468999888766543
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=6.7e-19 Score=151.98 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=151.3
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhH
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
.+|.++++|..+.+++|++..++.+...+..+ .+++|+||||+|||++++++++.+ ...+..+++........
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~-----~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM-----DLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT-----TCCEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEecCCCCChhh
Confidence 36889999999999999999999998888775 469999999999999999999987 33455555543222222
Q ss_pred HHHHHHHhhhc---c--cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc--
Q 021959 121 VRQQIQDFAST---Q--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN-- 182 (305)
Q Consensus 121 ~~~~i~~~~~~---~--~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~~~-- 182 (305)
+ +...... . .+..+ .-..++++|||++.+....++.|+..+++. +....++.++|...
T Consensus 88 l---~g~~~~~~~~~~~~~~~g-~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~ 163 (331)
T 2r44_A 88 L---IGTMIYNQHKGNFEVKKG-PVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQE 163 (331)
T ss_dssp H---HEEEEEETTTTEEEEEEC-TTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCS
T ss_pred c---CCceeecCCCCceEeccC-cccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCccc
Confidence 1 1100000 0 00000 001369999999999999999999999964 23344554555332
Q ss_pred ---ccchhhhccee-EEEecCCCHHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHHc----
Q 021959 183 ---KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEA----------------------EGLDVTEGGLAALVRLC---- 232 (305)
Q Consensus 183 ---~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~l~~~~---- 232 (305)
.+++++.+||. .+.+++|+.++..++++..+.. .++.+++++++.+++.+
T Consensus 164 ~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r 243 (331)
T 2r44_A 164 GTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATR 243 (331)
T ss_dssp CCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 37899999995 5999999999999999887654 26678999998888754
Q ss_pred -CC---------------CHHHHHHHHHHHhh-----ccCccCHHHHHhhhC
Q 021959 233 -NG---------------DMRKALNILQSTHM-----ASQQITEEAVYLCTG 263 (305)
Q Consensus 233 -~g---------------~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~ 263 (305)
.| ++|.+.+.++.+.. ....++.+++.+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 244 FPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp SGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred ccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 22 69999888865443 224589999887664
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=1.9e-18 Score=150.18 Aligned_cols=216 Identities=14% Similarity=0.146 Sum_probs=140.3
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCC----CCcc-----------------
Q 021959 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHN----------------- 105 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~----------------- 105 (305)
-+|.+|++++|++..++.+..........+++|+||||||||++|+++++.+... +...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 3567899999999988776655554444569999999999999999999987421 0000
Q ss_pred -------cEEEeecCCCcChhHH------HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh----
Q 021959 106 -------MILELNASDDRGIDVV------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY---- 168 (305)
Q Consensus 106 -------~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---- 168 (305)
.++.+... .....+ ...+...........-..+.+++++|||++.+..+.++.|+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~ 175 (350)
T 1g8p_A 98 NVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 175 (350)
T ss_dssp CEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence 11111110 111111 11111110000000001123689999999999999999999999974
Q ss_pred ---------cCCceEEEEecCCc-ccchhhhccee-EEEecCCC-HHHHHHHHHHH------------------------
Q 021959 169 ---------TKNTRFALICNQVN-KIIPALQSRCT-RFRFAPLE-PVHVTERLKHV------------------------ 212 (305)
Q Consensus 169 ---------~~~~~iil~~~~~~-~l~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~------------------------ 212 (305)
+.+..+|.++|... .+.+++.+||. .+.+++|+ .++..+++...
T Consensus 176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (350)
T 1g8p_A 176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 255 (350)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence 23455666677544 78899999995 49999995 44444665442
Q ss_pred -----HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHhhc-----cCccCHHHHHhhhCC
Q 021959 213 -----IEAEGLDVTEGGLAALVRLCNG----DMRKALNILQSTHMA-----SQQITEEAVYLCTGN 264 (305)
Q Consensus 213 -----~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~~ 264 (305)
....++.+++++++.|++.+.+ ++|.+.+.++.+... ...|+.+++.+++..
T Consensus 256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 1223567999999999998866 899999999765442 245899998876643
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.79 E-value=1.1e-18 Score=157.10 Aligned_cols=194 Identities=15% Similarity=0.211 Sum_probs=140.1
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCC
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (305)
..+|.++++|..+++++|++..++.+...+.....++++|+||||||||++++.+++.+.+.. ....++.+++..
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 246 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc
Confidence 456889999999999999999999999999988888899999999999999999999985532 133455555541
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc-----ccch
Q 021959 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KIIP 186 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~-----~l~~ 186 (305)
......+...+..... .++.+|||| ...+.++.|...++.. ...+|.+++... .+++
T Consensus 247 ~~~g~~e~~~~~~~~~~~~---------~~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 247 KYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp ------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTSS--SCEEEEECCTTTTHHHHTTCS
T ss_pred cccchHHHHHHHHHHHHHh---------cCCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcCH
Confidence 1111233344443322 125899999 3334555566666532 567777777665 5789
Q ss_pred hhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHhh
Q 021959 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (305)
Q Consensus 187 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~~ 248 (305)
++.+||..+.|++|+.++...++...+.. .++.++++++..+++++.+ -++.+++.++.++.
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 99999999999999999999999987765 6788999999999987653 36789999877664
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.79 E-value=1e-17 Score=149.61 Aligned_cols=199 Identities=19% Similarity=0.248 Sum_probs=140.8
Q ss_pred CCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021959 49 PQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
..+|++++|.++.++.+.+.+.. ..+.+++|+||||||||+++++++... ...++.++++...
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~~ 86 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDFV 86 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHHH
Confidence 45789999999999888877542 123459999999999999999999987 4567777665432
Q ss_pred C------hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHh--cCCceE
Q 021959 117 G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKNTRF 174 (305)
Q Consensus 117 ~------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~i 174 (305)
. ...++..+..+... .+++|||||+|.+.. ..++.|+..++.. ..++.+
T Consensus 87 ~~~~g~~~~~~r~lf~~A~~~---------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 87 ELFVGVGAARVRDLFAQAKAH---------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp TCCTTHHHHHHHHHHHHHHHT---------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred HHHhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 1 12233333333221 268999999998843 2345566666642 345677
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HHHHHHHHHHhhc
Q 021959 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHMA 249 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g~~-r~~~~~l~~~~~~ 249 (305)
|.++|..+.+++.+.+ || ..+.+++|+.+++.++++.++...+ +.++ .+..+++.+.|+. +.+.+++..++..
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALL 235 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7788888888888876 77 5789999999999999988776544 3333 3677999999977 6777777665542
Q ss_pred -----cCccCHHHHHhhhC
Q 021959 250 -----SQQITEEAVYLCTG 263 (305)
Q Consensus 250 -----~~~i~~~~v~~~~~ 263 (305)
...|+.+++..++.
T Consensus 236 A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 236 AAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHTTCSSBCHHHHHHHHH
T ss_pred HHHcCCCeecHHHHHHHHH
Confidence 24588888877664
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=2.3e-18 Score=147.33 Aligned_cols=194 Identities=16% Similarity=0.222 Sum_probs=138.7
Q ss_pred cccccchHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021959 53 ADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..++|++..++.+...+... .+ .+++|+||+|||||++|+++++.+...+. .++.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeecccccccccHHH
Confidence 46789999999888887653 12 35999999999999999999999865433 455666554322222222
Q ss_pred HHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecC-----
Q 021959 124 QIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ----- 180 (305)
Q Consensus 124 ~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~----- 180 (305)
.+........... ....++++++|||++.++...++.|++++++.. .++.+|+++|.
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i 174 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLI 174 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHH
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHH
Confidence 2110000000000 001235899999999999999999999999754 24558888877
Q ss_pred ---------------------Ccccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHH
Q 021959 181 ---------------------VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALV 229 (305)
Q Consensus 181 ---------------------~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~ 229 (305)
...+.+++.+|+ ..+.|.||+.+++..++...+.+. ...+++++++.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (311)
T 4fcw_A 175 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLA 254 (311)
T ss_dssp HTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred HhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 335778889999 789999999999999888866542 3468999999999
Q ss_pred HHc---CCCHHHHHHHHHHHhh
Q 021959 230 RLC---NGDMRKALNILQSTHM 248 (305)
Q Consensus 230 ~~~---~g~~r~~~~~l~~~~~ 248 (305)
+++ +|++|.+.+.++.++.
T Consensus 255 ~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 255 ERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHSCBTTTBTTTHHHHHHHHTH
T ss_pred HhCCCccCCchhHHHHHHHHHH
Confidence 975 4999999999987765
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=5.8e-18 Score=143.99 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=130.1
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
...+.+|++++|.+..++.|...+.. ....+++|+||||||||++++++++.+ ...++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-----~~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-----CCCEEEEEh
Confidence 34556789999999999999888753 234459999999999999999999987 345666665
Q ss_pred CCC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHh--cC
Q 021959 113 SDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY--TK 170 (305)
Q Consensus 113 ~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~--~~ 170 (305)
... .....+...+..+.. ..+++|+|||+|.+... .+..|+..++.. ..
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 321 111223333333322 12689999999987643 256778888743 34
Q ss_pred CceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 021959 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (305)
Q Consensus 171 ~~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 246 (305)
++.+|.+||..+.+++++.+ |+ ..+++++|+.+++.++++..+.+.+.. .+..++.++..+.| ..+.+.++++.+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56778888888889999887 77 679999999999999999888766542 22234567776654 334455555444
Q ss_pred h
Q 021959 247 H 247 (305)
Q Consensus 247 ~ 247 (305)
+
T Consensus 233 ~ 233 (301)
T 3cf0_A 233 C 233 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.77 E-value=1e-17 Score=139.98 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=134.0
Q ss_pred CccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021959 51 SLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
+|++++|++..+..+...+.. ....+++|+||+|||||++|+++++..... ...++.+++.... ...+...+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~-~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC-HHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC-hhHHHHHhcCC
Confidence 578899999888887766653 233559999999999999999999876332 3457777776532 22222211100
Q ss_pred hhcccccCC--------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc-------
Q 021959 129 ASTQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN------- 182 (305)
Q Consensus 129 ~~~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~~~------- 182 (305)
. ...+.+. ....+++|+|||++.++.+.+..|+.++++. +.++.+|++++...
T Consensus 81 ~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 81 E-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp C----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred c-ccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 0 0000000 0123579999999999999999999999864 34677888887642
Q ss_pred ccchhhhcce--eEEEecCCCH--HHHHHHHHH----HHHHcCC----CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhc
Q 021959 183 KIIPALQSRC--TRFRFAPLEP--VHVTERLKH----VIEAEGL----DVTEGGLAALVRLC-NGDMRKALNILQSTHMA 249 (305)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~----~~~~~~~----~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~ 249 (305)
.+.+++.+|+ ..+.++++.. +++..++.. .+...+. .+++++++.+..+. +||+|.+.+.++.++..
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 3567888887 3577777765 555555443 3344454 68999999998775 89999999999887653
Q ss_pred c--CccCHHHHH
Q 021959 250 S--QQITEEAVY 259 (305)
Q Consensus 250 ~--~~i~~~~v~ 259 (305)
. ..|+.+++.
T Consensus 240 ~~~~~i~~~~l~ 251 (265)
T 2bjv_A 240 HGTSDYPLDDII 251 (265)
T ss_dssp HCCSSSCBCCCC
T ss_pred CCCCcCcHHHcc
Confidence 3 346666553
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.4e-18 Score=137.77 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=114.7
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-----cccEEEeecCCC
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~ 115 (305)
.+|.++++|..|++++|++..++.+...+......+++|+||+|+|||++++.+++.+.+... ...++.+++...
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 578999999999999999999999999998877778999999999999999999998854211 233444443221
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------HHHHHHHHHHHhcCCceEEEEecCCc-
Q 021959 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN- 182 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~iil~~~~~~- 182 (305)
.........+........ ...++.+|+|||+|.+... ..+.|..+++.. +..+|++++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLDEY 163 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEEECHHHH
T ss_pred hccCCccccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--CeEEEEeCCHHHH
Confidence 112222222222222110 0122579999999999632 255566666543 567777776554
Q ss_pred ----ccchhhhcceeEEEecCCCHHHHHHHH
Q 021959 183 ----KIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 183 ----~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
.+++++.+|+..+.+++|+.+++.+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 568999999988999999999987764
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=1.1e-17 Score=161.09 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=138.2
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCCC
Q 021959 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (305)
.+|.++++|..|++++|++..+..+...+.....++++|+||||+|||++++.+++.+.+.. ....++.+++...
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 45788899999999999999999999999888778899999999999999999999884421 1345666655432
Q ss_pred c----Ch----hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC--------HHHHHHHHHHHHHhcCCceEEEEec
Q 021959 116 R----GI----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 116 ~----~~----~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
. .. ..+...+...... ..+.||||||+|.+. .+..+.|..+++.. ...+|.+++
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~~--------~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQS--------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp --------CHHHHHHHHHHHHHTT--------CSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred hccCccchHHHHHHHHHHHHHHhc--------CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 1 11 1222333322211 125899999999997 23344566666543 456677765
Q ss_pred CCc----ccchhhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHH
Q 021959 180 QVN----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQS 245 (305)
Q Consensus 180 ~~~----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~ 245 (305)
... ..++++.+||..+.+++|+.++..++++..+.. .++.++++++..+++.+.| -++.++..++.
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~llde 387 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDE 387 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHH
Confidence 442 367899999999999999999999999876653 4778899999999988743 38888888876
Q ss_pred Hhh
Q 021959 246 THM 248 (305)
Q Consensus 246 ~~~ 248 (305)
++.
T Consensus 388 a~a 390 (854)
T 1qvr_A 388 AAA 390 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.75 E-value=1.3e-17 Score=150.07 Aligned_cols=188 Identities=19% Similarity=0.249 Sum_probs=134.8
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
...+..|++++|.+..++.|...+.. ....+++|+||||||||++|+++++.. ...++.+++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~ 271 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEH
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEc
Confidence 45677899999999999999888753 344559999999999999999999986 456777776
Q ss_pred CCCc--C----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhc--CCce
Q 021959 113 SDDR--G----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTR 173 (305)
Q Consensus 113 ~~~~--~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~ 173 (305)
.... . ...+...+..+.. ..+++|||||+|.+.. ..+..|+..++... .++.
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred hHhhhhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 5321 1 1222333333322 1258999999977643 45778899998643 3566
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHhh
Q 021959 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHM 248 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~ 248 (305)
+|.++|....+++.+.+ || ..+.+++|+.++..++++.++...+.. .+..+..+++.+.|. .+.+.++++.++.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 77788888889999988 66 569999999999999999887655433 223467788888774 4445555555443
No 57
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=2.1e-17 Score=138.58 Aligned_cols=186 Identities=15% Similarity=0.235 Sum_probs=118.5
Q ss_pred ccccchHHHHHHHH-------HHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc---Ch--
Q 021959 54 DVAAHRDIVDTIDR-------LTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---GI-- 118 (305)
Q Consensus 54 ~~~g~~~~~~~l~~-------~l~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-- 118 (305)
.++|+...++.+.. .+. .....+++|+||||||||++|+++++.. ...++.++++... ..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEECGGGCTTCCHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeCHHHhcCCchHH
Confidence 45666555444433 333 3334459999999999999999999987 4456666655311 11
Q ss_pred --hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC----------CHHHHHHHHHHHHHh---cCCceEEEEecCCcc
Q 021959 119 --DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM----------TKDAQFALRRVIEKY---TKNTRFALICNQVNK 183 (305)
Q Consensus 119 --~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~l~~~l~~~---~~~~~iil~~~~~~~ 183 (305)
..+...+..+. ..++.+|+|||+|.+ .....+.|..+++.. +..+.+|.+++....
T Consensus 109 ~~~~~~~~~~~~~---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 109 KCQAMKKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp HHHHHHHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH
T ss_pred HHHHHHHHHHHHH---------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh
Confidence 12222222221 123799999999987 333445555555432 223345556666655
Q ss_pred cch-hhhcce-eEEEecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHhhccCccCH
Q 021959 184 IIP-ALQSRC-TRFRFAPLEP-VHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTHMASQQITE 255 (305)
Q Consensus 184 l~~-~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-----~~r~~~~~l~~~~~~~~~i~~ 255 (305)
+++ .+.+|+ ..+.+++++. +++..++... + .++++.+..+++.+.| ++|.+++.++.+.........
T Consensus 180 l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~ 254 (272)
T 1d2n_A 180 LQEMEMLNAFSTTIHVPNIATGEQLLEALELL----G-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRV 254 (272)
T ss_dssp HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----T-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHH
T ss_pred cchhhhhcccceEEcCCCccHHHHHHHHHHhc----C-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHH
Confidence 655 567785 7789988887 5665555442 2 4789999999999987 999999999988765443333
Q ss_pred HHH
Q 021959 256 EAV 258 (305)
Q Consensus 256 ~~v 258 (305)
+.+
T Consensus 255 ~~~ 257 (272)
T 1d2n_A 255 RKF 257 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.74 E-value=1.8e-16 Score=134.74 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=139.2
Q ss_pred cccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhh
Q 021959 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (305)
++++|++..++.+...+.. ....+++|+||+|||||++|+++++..... ...++.+++.... ...+...+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~-~~l~~~~lfg~~- 77 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALN-ESLLESELFGHE- 77 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCC-HHHHHHHHTCCC-
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCC-hHHHHHHhcCcc-
Confidence 3578988888888777764 334459999999999999999999875332 3456777776532 222221111000
Q ss_pred cccccCC--------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------ccc
Q 021959 131 TQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (305)
Q Consensus 131 ~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l 184 (305)
...+.+. ....+++|||||++.++...+..|+.++++.. .++++|++++.. ..+
T Consensus 78 ~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 78 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred ccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 0001110 01235799999999999999999999999652 457788888764 134
Q ss_pred chhhhcce--eEEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--
Q 021959 185 IPALQSRC--TRFRFAPLE--PVHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (305)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~-- 250 (305)
.+++..|+ ..+.++|+. .+++..++...+. ..+ ..+++++++.+.++. +||+|.+.+.++.++..+
T Consensus 158 r~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~ 237 (304)
T 1ojl_A 158 RQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTG 237 (304)
T ss_dssp CHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 56778886 446787777 4555555554433 333 468999999999987 999999999998877643
Q ss_pred CccCHHHHHhhh
Q 021959 251 QQITEEAVYLCT 262 (305)
Q Consensus 251 ~~i~~~~v~~~~ 262 (305)
..|+.+++...+
T Consensus 238 ~~i~~~~l~~~~ 249 (304)
T 1ojl_A 238 EYISERELPLAI 249 (304)
T ss_dssp SSBCGGGSCGGG
T ss_pred CcccHHhhhhhh
Confidence 457777775443
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=9.3e-17 Score=153.16 Aligned_cols=217 Identities=12% Similarity=0.127 Sum_probs=149.8
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-----cccEEEeecC
Q 021959 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNAS 113 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~ 113 (305)
-..+|.++++|..|++++|++..++.+.+.+......+++|+||||||||++++.+++.+.+... ...++.++..
T Consensus 172 ~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 172 FTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp SSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred HhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 34568999999999999999999999999999888888999999999999999999998854321 2233333322
Q ss_pred CC----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC---------HHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 114 DD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 114 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.. .........+....... ...++.+|||||+|.+. .+..+.|..+++. ....+|.+++.
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~-----~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~ 324 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQL-----EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHH-----SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECH
T ss_pred HHhccccccchHHHHHHHHHHHH-----HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCc
Confidence 11 11112222222222211 11236899999999983 1222333333332 24566666653
Q ss_pred C-----cccchhhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHH
Q 021959 181 V-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQS 245 (305)
Q Consensus 181 ~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~ 245 (305)
. ...++++.+||..+.+++|+.++..+++...+.. .++.++++++..++..+.| .+..++..++.
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~ 404 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHH
Confidence 2 3456889999999999999999999999887765 5788999999998887654 46678887766
Q ss_pred Hhhc---------cCccCHHHHHhhh
Q 021959 246 THMA---------SQQITEEAVYLCT 262 (305)
Q Consensus 246 ~~~~---------~~~i~~~~v~~~~ 262 (305)
++.. ...++.+++.+++
T Consensus 405 a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 405 AGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHhcccccccCCccCHHHHHHHH
Confidence 5532 2458888887665
No 60
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=4.5e-17 Score=148.88 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=136.6
Q ss_pred cccccchHHHHHHHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021959 53 ADVAAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
++++|.+.....+...+. ....++++|+||||||||++++.++..+ ...+..+++........+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-----~~~~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-----GRKFVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-----TCEEEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEecccchhhhhhhHHH
Confidence 468899988887765543 2234569999999999999999999998 34556665544222111110000
Q ss_pred Hhhh----cc--cccCCCCCceEEEEEeCCCcCCHHH----HHHHHHHHHHhc---------------CCceEEEEecCC
Q 021959 127 DFAS----TQ--SFSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKYT---------------KNTRFALICNQV 181 (305)
Q Consensus 127 ~~~~----~~--~~~~~~~~~~~vliiDe~~~l~~~~----~~~l~~~l~~~~---------------~~~~iil~~~~~ 181 (305)
.... .. .+.. ......+++|||++.+..+. ++.|++.++... .++.+|+++|..
T Consensus 156 ~~ig~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 156 TYVGAMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp --------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHhccCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 0000 00 0111 11123599999999998763 477888776422 356788888999
Q ss_pred cccchhhhcceeEEEecCCCHHHHHHHHHHHHHH-----c-----CCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHhhc
Q 021959 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-----E-----GLDVTEGGLAALVRLCN--GDMRKALNILQSTHMA 249 (305)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-----~-----~~~~~~~~~~~l~~~~~--g~~r~~~~~l~~~~~~ 249 (305)
..+++++++|+.++.|++|+.++..+++..++.. . ++.++++++..+++.+. |++|.+.+.++.++..
T Consensus 235 ~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~ 314 (543)
T 3m6a_A 235 ATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRK 314 (543)
T ss_dssp TTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHH
Confidence 9999999999999999999999999998876632 2 34578999999887543 7888888777655431
Q ss_pred -----------cCccCHHHHHhhhCCCC
Q 021959 250 -----------SQQITEEAVYLCTGNPL 266 (305)
Q Consensus 250 -----------~~~i~~~~v~~~~~~~~ 266 (305)
...|+.+++.++++...
T Consensus 315 aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 315 AAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 12488888888886654
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.73 E-value=4.8e-19 Score=148.34 Aligned_cols=206 Identities=19% Similarity=0.228 Sum_probs=134.6
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
++.+..|++++|++..++.+...+.. ....+++|+||||||||++|+++++.+.. .++.+++.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCSC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEechH
Confidence 34566789999999999988877651 22345999999999999999999998832 33444433
Q ss_pred CCc------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH---------------HHHHHHHHHHhc---
Q 021959 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA---------------QFALRRVIEKYT--- 169 (305)
Q Consensus 114 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~---------------~~~l~~~l~~~~--- 169 (305)
... ....+...+..+.. ..+++|+|||+|.+.... +..|+..++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHH---------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred HHHHhhcchHHHHHHHHHHHHHh---------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 211 11111122222211 125899999999986432 234555554332
Q ss_pred CCceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q 021959 170 KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQS 245 (305)
Q Consensus 170 ~~~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 245 (305)
..+.+|.+++....+++.+.+ |+ ..+.+++|+.+++.++++..+...+.. ++..++.+++.+.| ..+.+.++++.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 235566677777778888887 66 668999999999999998877544322 22235667777766 35566666665
Q ss_pred Hhhcc-----CccCHHHHHhhhCCCC
Q 021959 246 THMAS-----QQITEEAVYLCTGNPL 266 (305)
Q Consensus 246 ~~~~~-----~~i~~~~v~~~~~~~~ 266 (305)
++..+ ..|+.+++.+++....
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTCC
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHHh
Confidence 55432 4699999988876553
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=1.3e-16 Score=140.08 Aligned_cols=205 Identities=19% Similarity=0.224 Sum_probs=134.2
Q ss_pred ccccchHHHHHHHHHHh----c--------------------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 54 DVAAHRDIVDTIDRLTS----E--------------------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
.++|++..++.+...+. . ....+++|+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 47899999998877762 0 123459999999999999999999987
Q ss_pred cccEEEeecCCCcCh----hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHH
Q 021959 104 HNMILELNASDDRGI----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVI 165 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l 165 (305)
...++.+++...... ......+......... ......+++|+|||++.+... .++.|+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDW-NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTT-CHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccc-hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 345666665432110 0111112111111100 000123689999999999877 889999999
Q ss_pred HHhc---------------------CCceEEEEecC-----------------------------------------Ccc
Q 021959 166 EKYT---------------------KNTRFALICNQ-----------------------------------------VNK 183 (305)
Q Consensus 166 ~~~~---------------------~~~~iil~~~~-----------------------------------------~~~ 183 (305)
+... .+..+|++++. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 9531 23455555541 112
Q ss_pred cchhhhcce-eEEEecCCCHHHHHHHHHH----HHH----H-----cCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 021959 184 IIPALQSRC-TRFRFAPLEPVHVTERLKH----VIE----A-----EGLDVTEGGLAALVRLCN---GDMRKALNILQST 246 (305)
Q Consensus 184 l~~~l~~r~-~~i~~~~~~~~~~~~~l~~----~~~----~-----~~~~~~~~~~~~l~~~~~---g~~r~~~~~l~~~ 246 (305)
+.+++.+|+ .++.|++++.+++..++.. .+. . .++.+++++++.|++.+. |++|.+.+.++.+
T Consensus 256 ~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~ 335 (376)
T 1um8_A 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDF 335 (376)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred CChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 567888898 8899999999999988862 111 1 234689999999999865 9999999999876
Q ss_pred hhc-----cC------ccCHHHHHhhhCC
Q 021959 247 HMA-----SQ------QITEEAVYLCTGN 264 (305)
Q Consensus 247 ~~~-----~~------~i~~~~v~~~~~~ 264 (305)
+.. .. .|+.+++.+....
T Consensus 336 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 336 CLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 652 11 3888888775543
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=2.4e-17 Score=129.95 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=107.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCC
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (305)
..+|.++++|..|++++|++..++.+...+......+++|+||+|+|||++++.+++.+.... ....++.++...
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (187)
T 2p65_A 9 SRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence 467999999999999999999999999999887777899999999999999999999885421 123344443321
Q ss_pred C----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC---------HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 115 D----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 115 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
. .........+........- ..++.+|+|||+|.+. ....+.|..+++. .+..+|++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~ 162 (187)
T 2p65_A 89 LIAGAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVS 162 (187)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHH
T ss_pred hhcCCCchhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHH
Confidence 1 1111111222221111100 0125899999999986 3345556666654 356777777654
Q ss_pred c-----ccchhhhcceeEEEecCCC
Q 021959 182 N-----KIIPALQSRCTRFRFAPLE 201 (305)
Q Consensus 182 ~-----~l~~~l~~r~~~i~~~~~~ 201 (305)
. .+++++.+||..+.+++|+
T Consensus 163 ~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 163 EYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHhccHHHHHhcCcccCCCCC
Confidence 3 5789999999889998875
No 64
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.71 E-value=9.8e-16 Score=135.95 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=139.7
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHH-h----c--CCCCeEEE--ECCCCCcHHHHHHHHHHHHhCC----CCcccEEE
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLT-S----E--NRLPHLLL--YGPPGTGKTSTILAVARKLYGA----QYHNMILE 109 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l-~----~--~~~~~~ll--~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~ 109 (305)
+...+.| ..++|++..++.|...+ . + .....++| +||+|+|||++++.+++.+... +....++.
T Consensus 15 ~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 15 FDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp GSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3334444 56899999999888887 4 2 24445888 9999999999999999887432 11344566
Q ss_pred eecCCCcChhHHHHHHHHhhhcc-cccC--------------CCCCceEEEEEeCCCcCCH------HHHHHHHHHHHHh
Q 021959 110 LNASDDRGIDVVRQQIQDFASTQ-SFSF--------------GVKASVKLVLLDEADAMTK------DAQFALRRVIEKY 168 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~--------------~~~~~~~vliiDe~~~l~~------~~~~~l~~~l~~~ 168 (305)
+++........+...+....... +... ....++.+|+|||+|.+.. +....+++.+...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 66543223322222211111100 0000 0013478999999999853 5555566677654
Q ss_pred c-----CCceEEEEecCCc---ccc---hhhhcce-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC-
Q 021959 169 T-----KNTRFALICNQVN---KII---PALQSRC-TRFRFAPLEPVHVTERLKHVIEAEG--LDVTEGGLAALVRLCN- 233 (305)
Q Consensus 169 ~-----~~~~iil~~~~~~---~l~---~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~- 233 (305)
+ .+..+|++++... .+. +.+.+++ ..+.++|++.+++.+++...+...+ ..++++.+..+++.++
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 251 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCG
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 3 3455666765443 223 4455554 4499999999999999988776543 2578999999999999
Q ss_pred -----CCHHHHHHHHHHHhhc-----cCccCHHHHHhhh
Q 021959 234 -----GDMRKALNILQSTHMA-----SQQITEEAVYLCT 262 (305)
Q Consensus 234 -----g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 262 (305)
|++|.+...++.+... ...++.+++..++
T Consensus 252 ~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 252 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 9999999998765432 2357777765443
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=1.6e-16 Score=151.29 Aligned_cols=185 Identities=20% Similarity=0.279 Sum_probs=134.2
Q ss_pred cccccchHHHHHHHHHHhcCC-------C--CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH-H
Q 021959 53 ADVAAHRDIVDTIDRLTSENR-------L--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-R 122 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~-------~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (305)
..++|++..++.+...+.... . .+++|+||||||||++|+++++.+...+ ..++.++++........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE--ESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--TCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--cceEEEechhccccccccc
Confidence 468999999988888876321 1 1599999999999999999999985443 35667776543221100 1
Q ss_pred HHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCcc--------
Q 021959 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVNK-------- 183 (305)
Q Consensus 123 ~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~~~~-------- 183 (305)
..+...... .+++||+|||++.++++.++.|++++++. ..++.+|+++|....
T Consensus 569 ~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 569 GQLTEKVRR--------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp --CHHHHHH--------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred chhhHHHHh--------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 111111111 12579999999999999999999999973 246688888875332
Q ss_pred ----cchhhhcce-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHH
Q 021959 184 ----IIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALVRL---CNGDMRKALNILQST 246 (305)
Q Consensus 184 ----l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~ 246 (305)
+.+++.+|+ ..+.|+|++.+++.+++...+... .+.+++++++.|++. .+|++|.+.+.++..
T Consensus 641 ~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 641 LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 678999999 899999999999999888776542 346899999999875 368899888888765
Q ss_pred h
Q 021959 247 H 247 (305)
Q Consensus 247 ~ 247 (305)
.
T Consensus 721 v 721 (758)
T 3pxi_A 721 V 721 (758)
T ss_dssp T
T ss_pred H
Confidence 4
No 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.70 E-value=6.8e-16 Score=128.06 Aligned_cols=205 Identities=21% Similarity=0.248 Sum_probs=131.4
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
...+.+|++++|.+..+..+.+.... ....+++|+||+|+||||++++++..+. ..++.+++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 44556889999999888877666432 1234599999999999999999999872 345555543
Q ss_pred CC--cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------H---HHHHHHHHHHHhcCC--ceEE
Q 021959 114 DD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYTKN--TRFA 175 (305)
Q Consensus 114 ~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~~~~--~~ii 175 (305)
.. .........+........ ...+.++++||++.+.. . ..+.++..++..... ..++
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~-----~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHT-----TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 21 011111122222222111 11258999999976631 1 123344444433322 2344
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHhhc-
Q 021959 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTHMA- 249 (305)
Q Consensus 176 l~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~~-r~~~~~l~~~~~~- 249 (305)
.+++.+..+++++.+ |+ ..+.+++|+.++..++++..+. +..++++. +..+++.+.|+. +.+.+.++.++..
T Consensus 159 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 159 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456778888999987 55 6789999999999999987764 33444433 778999998865 6777777655542
Q ss_pred ----cCccCHHHHHhhh
Q 021959 250 ----SQQITEEAVYLCT 262 (305)
Q Consensus 250 ----~~~i~~~~v~~~~ 262 (305)
...|+.+++++++
T Consensus 237 ~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 237 AREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHTTCSSBCHHHHHHHT
T ss_pred HHhcCCCcCHHHHHHHh
Confidence 2458888888765
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-16 Score=152.60 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=139.0
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCC
Q 021959 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (305)
..+|.++++|..+++++|++..++.+...+.....++++|+||||||||++|+.+++.+.+.. ....++.++...
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~ 246 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc
Confidence 456888999999999999999999999999988888899999999999999999999985432 133444444411
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc-----ccch
Q 021959 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KIIP 186 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~-----~l~~ 186 (305)
......+...+..+.. ..+.+|||| ...+.++.|...++. ....+|.+++... .+++
T Consensus 247 ~~~G~~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 247 KYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred cccchHHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 1112234444444332 126899999 333455666666653 3567777777666 5789
Q ss_pred hhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHhh
Q 021959 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (305)
Q Consensus 187 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~------g~~r~~~~~l~~~~~ 248 (305)
++.+||+.+.|++|+.+++.+++...+.. .++.++++++..+++.+. ..++.++..+..++.
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 99999999999999999999999877655 577899999999888764 346788888876654
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.70 E-value=2.1e-16 Score=148.59 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=129.4
Q ss_pred CCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
....|+++.|.++.++.|++.+.- ..+.+++||||||||||++|+++++++ ...++.++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHH
Confidence 345799999999999988887641 234459999999999999999999987 55677777654
Q ss_pred C--cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhc--CCceEEEEec
Q 021959 115 D--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICN 179 (305)
Q Consensus 115 ~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~iil~~~ 179 (305)
. .........+....... ....++||||||+|.+.+ ...+.|+..++... .++.+|.+||
T Consensus 274 l~sk~~gese~~lr~lF~~A-----~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEA-----EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHH-----TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred hhcccchHHHHHHHHHHHHH-----HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 2 22222223333332221 122369999999999853 23456777777543 3566777889
Q ss_pred CCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 021959 180 QVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQST 246 (305)
Q Consensus 180 ~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~ 246 (305)
.++.+++++++ || ..++++.|+..++.++++.++...... ++..+..|++.+.|- ...+.++++.+
T Consensus 349 ~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp STTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred ChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999998 77 779999999999999998776543321 223467888888763 33333444433
No 69
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.70 E-value=6.3e-16 Score=138.83 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=137.0
Q ss_pred CCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
.+.+|++++|+++.+..+.+.... ..+.+++|+||||||||+++++++... ...++.+++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-----~~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCCEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEehhHH
Confidence 567899999999999888777542 113459999999999999999999987 355777776542
Q ss_pred c--ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHH---HHHHHHHHHhcC--CceEEEE
Q 021959 116 R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQ---FALRRVIEKYTK--NTRFALI 177 (305)
Q Consensus 116 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~---~~l~~~l~~~~~--~~~iil~ 177 (305)
. ........+....... ....+++++|||+|.+.. +.. +.++..++.... ...++.+
T Consensus 101 ~~~~~g~~~~~v~~lfq~a-----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETA-----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTS-----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC
T ss_pred HHhhhhhHHHHHHHHHHHH-----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 2 1222233333333221 122368999999987742 122 333333332222 2345555
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHhhc---
Q 021959 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTHMA--- 249 (305)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~~-r~~~~~l~~~~~~--- 249 (305)
++.++.+++++.+ |+ ..+.+++|+.+++.++++.++. +..+++++ +..++..+.|+. +.+.+++..++..
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 6777778888887 45 6789999999999999877654 34455443 788999999987 7888888766542
Q ss_pred --cCccCHHHHHhhh
Q 021959 250 --SQQITEEAVYLCT 262 (305)
Q Consensus 250 --~~~i~~~~v~~~~ 262 (305)
...|+.+++..++
T Consensus 254 ~~~~~It~~dl~~al 268 (499)
T 2dhr_A 254 EGRRKITMKDLEEAA 268 (499)
T ss_dssp TCCSSCCSHHHHHHH
T ss_pred hCCCccCHHHHHHHH
Confidence 2358888887665
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=5.5e-16 Score=147.88 Aligned_cols=183 Identities=18% Similarity=0.223 Sum_probs=133.9
Q ss_pred cccccchHHHHHHHHHHhcC---------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh-----
Q 021959 53 ADVAAHRDIVDTIDRLTSEN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI----- 118 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 118 (305)
..++|++..++.+...+... ...+++|+||||||||++|+++++.+ ...++.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-----~~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-----cCCEEEEechhhcchhhHhh
Confidence 45889999998887776531 12259999999999999999999998 345666665432110
Q ss_pred ------hHH----HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEE
Q 021959 119 ------DVV----RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (305)
Q Consensus 119 ------~~~----~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~ 177 (305)
... ...+...... .+++||+|||++.+.++.++.|++++++.. .++.+|++
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHHH--------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred hcCCCCCCcCccccchHHHHHHh--------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 000 0011111111 226899999999999999999999999742 35668888
Q ss_pred ecCCc-------------------------ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCH
Q 021959 178 CNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTE 222 (305)
Q Consensus 178 ~~~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~ 222 (305)
+|... .+.+++.+|+ .++.|++++.+++..++...+.+. .+.+++
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 87532 5678899999 789999999999999988877632 346899
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHhh
Q 021959 223 GGLAALVRLC---NGDMRKALNILQSTHM 248 (305)
Q Consensus 223 ~~~~~l~~~~---~g~~r~~~~~l~~~~~ 248 (305)
++++.|++.+ ++++|.+.+.++....
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 9999999876 4558888888876654
No 71
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.68 E-value=2.2e-16 Score=146.47 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=145.7
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC-----
Q 021959 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----- 117 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----- 117 (305)
...+|+|..|++++|+...++.+...+..+ .+++|+||+||||||+++.++..+.........+..+......
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred CcccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 456899999999999999999999999887 4699999999999999999999874432111111111100000
Q ss_pred -----hhHHHHHHH----------------------------------------------Hhhhcc--------c-cc--
Q 021959 118 -----IDVVRQQIQ----------------------------------------------DFASTQ--------S-FS-- 135 (305)
Q Consensus 118 -----~~~~~~~i~----------------------------------------------~~~~~~--------~-~~-- 135 (305)
...+.+... .+.... . +.
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 000000000 000000 0 00
Q ss_pred -------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh---------------------cCCceEEEEecCC--cccc
Q 021959 136 -------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY---------------------TKNTRFALICNQV--NKII 185 (305)
Q Consensus 136 -------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---------------------~~~~~iil~~~~~--~~l~ 185 (305)
.-..++++++||||++.+++..++.|++.+++. +.++++|+++|.. ..+.
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 001134579999999999999999999999843 2355688888765 5789
Q ss_pred hhhhccee----EEEecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHH
Q 021959 186 PALQSRCT----RFRFAPL---EPVHVTERLKHVIEAE-----GLDVTEGGLAALVRLC---NG-------DMRKALNIL 243 (305)
Q Consensus 186 ~~l~~r~~----~i~~~~~---~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~---~g-------~~r~~~~~l 243 (305)
+++.+||. .+.|++. ..+.+..++...+... ...++++++..|.+++ .| ++|.+.+++
T Consensus 269 ~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ll 348 (604)
T 3k1j_A 269 PALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIV 348 (604)
T ss_dssp HHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHH
T ss_pred HHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHH
Confidence 99999983 4555432 3455666665544432 2478999999998865 56 699999999
Q ss_pred HHHhhc-----cCccCHHHHHhhhC
Q 021959 244 QSTHMA-----SQQITEEAVYLCTG 263 (305)
Q Consensus 244 ~~~~~~-----~~~i~~~~v~~~~~ 263 (305)
+.+... ...|+.++|.+++.
T Consensus 349 r~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 349 RAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccHHHHHHHHH
Confidence 766542 34699999988874
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.67 E-value=8e-15 Score=123.22 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=130.4
Q ss_pred CCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
.+.+|++++|.++.+..+.+.... ....+++|+||+|+||||++++++..+. ..++.+++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 456799999999988877766542 1233599999999999999999999872 34555554321
Q ss_pred --cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh---cC-C-ceEEEE
Q 021959 116 --RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---TK-N-TRFALI 177 (305)
Q Consensus 116 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~---~~-~-~~iil~ 177 (305)
.........+........ ...+.++++||++.+. ......+..++... .. . ..++.+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~-----~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHH-----TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEE
T ss_pred HHHHhhHHHHHHHHHHHHHH-----hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 011111122222221110 0125899999997652 12233334444432 22 2 344445
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHHHHhhc---
Q 021959 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGDM-RKALNILQSTHMA--- 249 (305)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~~-r~~~~~l~~~~~~--- 249 (305)
++.+..+++++.+ |+ ..+.+++|+.+++.++++..+. +..+++++ +..++..+.|+. +.+.+.++.++..
T Consensus 185 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 185 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 6788888999887 55 6789999999999999987764 33444433 778999999876 6677777655542
Q ss_pred --cCccCHHHHHhhh
Q 021959 250 --SQQITEEAVYLCT 262 (305)
Q Consensus 250 --~~~i~~~~v~~~~ 262 (305)
...|+.+++++++
T Consensus 263 ~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 263 EGRRKITMKDLEEAA 277 (278)
T ss_dssp TTCCSBCHHHHHHHT
T ss_pred hCCCCcCHHHHHHHh
Confidence 2458988888765
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=3.3e-16 Score=150.87 Aligned_cols=194 Identities=17% Similarity=0.234 Sum_probs=136.5
Q ss_pred cccccchHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021959 53 ADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..++|++..++.+...+.... + .+++|+||+|||||++|+++++.+.+.+ ..++.++++..........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHHH
Confidence 568999999998888776421 1 3599999999999999999999986543 4577777765332211111
Q ss_pred HHHHhhhccc------ccC-CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC----
Q 021959 124 QIQDFASTQS------FSF-GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV---- 181 (305)
Q Consensus 124 ~i~~~~~~~~------~~~-~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~---- 181 (305)
.+........ +.. -...+++||||||++.++.+.++.|++++++.. .++.+|+++|..
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~ 715 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI 715 (854)
T ss_dssp C--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHH
T ss_pred HcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHH
Confidence 1100000000 000 001236899999999999999999999999653 355678888752
Q ss_pred ----------------------cccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHH
Q 021959 182 ----------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALV 229 (305)
Q Consensus 182 ----------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~ 229 (305)
..+.+.|.+|+ ..+.|.|++.+++..++...+.+. ...+++++++.|+
T Consensus 716 ~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~ 795 (854)
T 1qvr_A 716 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLA 795 (854)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred hhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHH
Confidence 23567788898 778899999999999887766531 2468999999999
Q ss_pred HHcC---CCHHHHHHHHHHHhh
Q 021959 230 RLCN---GDMRKALNILQSTHM 248 (305)
Q Consensus 230 ~~~~---g~~r~~~~~l~~~~~ 248 (305)
+++. |++|.+.+.++.+..
T Consensus 796 ~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 796 ERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHCBTTTBTSTHHHHHHHHTH
T ss_pred HcCCCCCCChHHHHHHHHHHHH
Confidence 9764 999999999987764
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.62 E-value=6.6e-16 Score=134.83 Aligned_cols=204 Identities=21% Similarity=0.247 Sum_probs=133.0
Q ss_pred ccccchHHHHHHHHHHh-------------c--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021959 54 DVAAHRDIVDTIDRLTS-------------E--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~-------------~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
.++|++..++.+...+. . ....+++|+||||||||++|+++++.+ ...++.+++......
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhccc
Confidence 46999999999888873 1 133459999999999999999999987 456777776542211
Q ss_pred hH----HHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHh------------
Q 021959 119 DV----VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY------------ 168 (305)
Q Consensus 119 ~~----~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~------------ 168 (305)
.. ....+.......... -....+++|||||++.+... .++.|+++++..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYD-VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTC-HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------
T ss_pred ccccccHHHHHHHHHHHhhhh-HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 11 111222221111100 01123689999999988755 789999999821
Q ss_pred ---------cCCceEEEEecCC----------cc-----------------------------------cchhhhcce-e
Q 021959 169 ---------TKNTRFALICNQV----------NK-----------------------------------IIPALQSRC-T 193 (305)
Q Consensus 169 ---------~~~~~iil~~~~~----------~~-----------------------------------l~~~l~~r~-~ 193 (305)
..+..+|++++.. .. +.+.|.+|+ .
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~ 249 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 249 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCE
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCe
Confidence 1223444444421 11 578888998 5
Q ss_pred EEEecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHhhcc-------
Q 021959 194 RFRFAPLEPVHVTERLKH----VIE-------AEG--LDVTEGGLAALVRLC---NGDMRKALNILQSTHMAS------- 250 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~~------- 250 (305)
++.|.||+.+++.+++.. ... ..+ +.+++++++.|++.+ ++++|.+.+.++.+....
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 566999999998887764 221 123 357999999999753 677888888887666421
Q ss_pred -C----ccCHHHHHhhhC
Q 021959 251 -Q----QITEEAVYLCTG 263 (305)
Q Consensus 251 -~----~i~~~~v~~~~~ 263 (305)
. .|+.+.|++..+
T Consensus 330 ~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 330 EDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp CCSEEEECHHHHTTCCSC
T ss_pred cCCceeEEcHHHHhCcCC
Confidence 1 277777766553
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=1.3e-14 Score=130.43 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=131.2
Q ss_pred cccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH--HHHh--
Q 021959 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ--IQDF-- 128 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~-- 128 (305)
..++|++..++.+...+..+ .+++|+||||||||++|+++++.+.. ...+....+.. .....+... ....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~-~t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRF-STPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTT-CCHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhc-CCHHHhcCcccHHHHhh
Confidence 46889999999988888776 46999999999999999999987622 22233333322 112111110 0000
Q ss_pred -hhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc---------CCc-eEEEEecCCcc---cchhhhcce-e
Q 021959 129 -ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---------KNT-RFALICNQVNK---IIPALQSRC-T 193 (305)
Q Consensus 129 -~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---------~~~-~iil~~~~~~~---l~~~l~~r~-~ 193 (305)
.....+..+....++|++|||++.+++..++.|+.++++.. ... .+|++||.... ..+++.+|+ .
T Consensus 96 ~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 96 EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLI 175 (500)
T ss_dssp ----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCE
T ss_pred chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHH
Confidence 00001111111246799999999999999999999998531 122 34666765332 345888897 5
Q ss_pred EEEecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHc----------CCCHHHH
Q 021959 194 RFRFAPLEP-VHVTERLKHVI-----------------------EAEGLDVTEGGLAALVRLC----------NGDMRKA 239 (305)
Q Consensus 194 ~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~~~----------~g~~r~~ 239 (305)
.+.+++|+. ++...++.... .-.++.+++++++.+++.. +.++|.+
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~ 255 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRW 255 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHH
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHH
Confidence 588889887 55666665432 1226678899988888766 4588987
Q ss_pred HHHHHHHhh-----ccCccCHHHHHhhhCC
Q 021959 240 LNILQSTHM-----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 240 ~~~l~~~~~-----~~~~i~~~~v~~~~~~ 264 (305)
+..+..+.. ....++++++. ++..
T Consensus 256 ~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp HHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred HHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 777654332 23468999998 5443
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.60 E-value=7.2e-16 Score=144.92 Aligned_cols=180 Identities=17% Similarity=0.241 Sum_probs=113.2
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-
Q 021959 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD- 114 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~- 114 (305)
...|+++.|.++.++.|...+.. ..+.+++||||||||||.+|++++.++ ...++.++.+.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchh
Confidence 34678899999999988877642 123349999999999999999999997 55667665543
Q ss_pred -----CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHhcC--Cce
Q 021959 115 -----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK--NTR 173 (305)
Q Consensus 115 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~~~--~~~ 173 (305)
......+++.+..+.... ++||||||+|.+... ..+.|+..++.... ++.
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~---------P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTC---------SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred hccccchHHHHHHHHHHHHHHcC---------CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 234445666655553332 699999999998531 24567777775443 345
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Q 021959 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC----NGDMRKALNIL 243 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----~g~~r~~~~~l 243 (305)
+|.+||.++.+++++.+ |+ ..++++.|+.+++.++++.++.+..+. ++..++.|++.+ +.|+..+.+..
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHH
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 55577999999999998 87 779999999999999998776544332 122356666655 44666555443
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.58 E-value=1.4e-14 Score=109.55 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=91.9
Q ss_pred ccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021959 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
+++|++..++.+.+.+.. ....+++|+||+|||||++|+++++.....+ ..++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~~a--- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNAPQLNDFIALA--- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTSSCHHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcchhhhcHHHHc---
Confidence 578998888888887753 3334599999999999999999998653332 2455 6666533322222323222
Q ss_pred ccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc-------ccchhhhcce--eEEEecCC
Q 021959 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-------KIIPALQSRC--TRFRFAPL 200 (305)
Q Consensus 132 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~-------~l~~~l~~r~--~~i~~~~~ 200 (305)
.+++|+|||++.++.+.+..|+.+++..+.+.++|++++... .+.+.+..|+ ..++++|+
T Consensus 76 ---------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 76 ---------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp ---------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ---------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 147999999999999999999999987777888988887642 3445666664 34666664
No 78
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.58 E-value=2e-13 Score=114.11 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=107.6
Q ss_pred CCCccccccchHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021959 49 PQSLADVAAHRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..+|+++.|.++.++.|...+. -....+++|+||+|||||+++++++..+ ...++.+++...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-----~~~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-----CCCEEEEEcHHH
Confidence 4578899999999988877542 1223459999999999999999999986 335677776553
Q ss_pred cC--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-----------HHHHHHHHHHHhcC--CceEEEEecC
Q 021959 116 RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYTK--NTRFALICNQ 180 (305)
Q Consensus 116 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~--~~~iil~~~~ 180 (305)
.. .......+........ ...+.++++||++.+... ..+.++..+..... ...++.+++.
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~-----~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAK-----NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHH-----HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHH-----hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 22 2222333333322210 112589999999986421 12344444543322 2344556788
Q ss_pred Ccccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHH
Q 021959 181 VNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAE-GLDVT-EGGLAALVRL 231 (305)
Q Consensus 181 ~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~l~~~ 231 (305)
++.+++++.+ |+ ..+.++.|+.+++.++++.++... ...++ +..++.++..
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 8889999987 77 779999999999999998876432 22222 2235667653
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=2.8e-13 Score=117.31 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=122.5
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc------ChhHHHHH
Q 021959 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------GIDVVRQQ 124 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (305)
....++|++..++.|..++..+ +.++|+||+|+|||++++.+++.. . ++.+++.... ....+.+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----P--GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----S--EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----C--cEEEEeecccccccCCCHHHHHHH
Confidence 3467899999999999998765 679999999999999999999875 1 3344432211 22222222
Q ss_pred HHHhhhc------------------cccc-CC------------CCCceEEEEEeCCCcCCH-------HHHHHHHHHHH
Q 021959 125 IQDFAST------------------QSFS-FG------------VKASVKLVLLDEADAMTK-------DAQFALRRVIE 166 (305)
Q Consensus 125 i~~~~~~------------------~~~~-~~------------~~~~~~vliiDe~~~l~~-------~~~~~l~~~l~ 166 (305)
+...... .... .. ...++.+|+|||+|.+.. +....|..+++
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 2111100 0000 00 001268999999999864 33444555555
Q ss_pred HhcCCceEEEEecCCcc---------cchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 021959 167 KYTKNTRFALICNQVNK---------IIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM 236 (305)
Q Consensus 167 ~~~~~~~iil~~~~~~~---------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 236 (305)
.. .+..+++++..... ....+..|. ..+.+.|++.++..+++...+...+..++++.+..+++.++|+|
T Consensus 161 ~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 43 36777777654321 112233343 58999999999999999988777787889999999999999999
Q ss_pred HHHHHHHHH
Q 021959 237 RKALNILQS 245 (305)
Q Consensus 237 r~~~~~l~~ 245 (305)
..+...+..
T Consensus 240 ~~l~~~~~~ 248 (350)
T 2qen_A 240 GWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876665543
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.56 E-value=8.8e-14 Score=117.59 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=95.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--c----ChhHHHHHHHHhhhcccccCCCCCceEEEEEe
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--R----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiD 148 (305)
..++|+||||||||++++++++.+ ...++.++++.. . ....+.+.+..+.... ....++||+||
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-----~~~~~~vl~iD 106 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEII-----RKGNMCCLFIN 106 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH-----TTSSCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH-----hcCCCeEEEEe
Confidence 358999999999999999999998 445666665431 1 1122333333332110 12236899999
Q ss_pred CCCcCCH-------------HHHHHHHHHHHHh-------------cCCceEEEEecCCcccchhhhc--ceeEEEecCC
Q 021959 149 EADAMTK-------------DAQFALRRVIEKY-------------TKNTRFALICNQVNKIIPALQS--RCTRFRFAPL 200 (305)
Q Consensus 149 e~~~l~~-------------~~~~~l~~~l~~~-------------~~~~~iil~~~~~~~l~~~l~~--r~~~i~~~~~ 200 (305)
|+|.+.. ..+..|+++++.. ..++.+|++||..+.+++++.+ |+..+.+ .|
T Consensus 107 EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P 185 (293)
T 3t15_A 107 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 185 (293)
T ss_dssp CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CC
T ss_pred chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-Cc
Confidence 9998864 1347788887621 2367888899999999999986 6644333 46
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Q 021959 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLC-NGDMR 237 (305)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r 237 (305)
+.++..++++..+...+ ++.+.+..+.... +.++.
T Consensus 186 ~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 186 TREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred CHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 99999999998876555 4555565555544 44554
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.53 E-value=3.1e-13 Score=119.08 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=91.4
Q ss_pred ceEEEEEeCCCcCCHH------------HHHHHHHHHHHh----------cCCceEEEEe----cCCcccchhhhcceeE
Q 021959 141 SVKLVLLDEADAMTKD------------AQFALRRVIEKY----------TKNTRFALIC----NQVNKIIPALQSRCTR 194 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~------------~~~~l~~~l~~~----------~~~~~iil~~----~~~~~l~~~l~~r~~~ 194 (305)
+..++++||+|++... .|+.|+++++.. ..++.||+++ ..+..+.|.|.+|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 4669999999998532 567999999952 2345566665 2444577899999954
Q ss_pred -EEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH--------cCCCHHHHHHHHHHHhhc---
Q 021959 195 -FRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRL--------CNGDMRKALNILQSTHMA--- 249 (305)
Q Consensus 195 -i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~--------~~g~~r~~~~~l~~~~~~--- 249 (305)
+.|++++.++..+++.. .+...+. .++++++..|++. -++..|.+.+.++.++..
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 89999999999998831 1112233 5899999999985 246788888777765531
Q ss_pred ---c---C--ccCHHHHHhhhCCCC-hhhHHH
Q 021959 250 ---S---Q--QITEEAVYLCTGNPL-PKDIEQ 272 (305)
Q Consensus 250 ---~---~--~i~~~~v~~~~~~~~-~~~~~~ 272 (305)
. . .||.+.|.+.++... ..+++.
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~ 441 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGEVVENEDLSR 441 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTTTTTCHHHHH
T ss_pred hccccCCCeEEEeHHHHHHhcCccccCCChhc
Confidence 1 1 388999988776543 334443
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=3.4e-14 Score=107.13 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=87.2
Q ss_pred ccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021959 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
+++|++..++.+.+.+.. ....+++|+||+|||||++|+++++.. . .++.+++..... ......+...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-----~-~~~~~~~~~~~~-~~~~~~~~~a--- 74 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-----T-PWVSPARVEYLI-DMPMELLQKA--- 74 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-----S-CEECCSSTTHHH-HCHHHHHHHT---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-----C-CeEEechhhCCh-HhhhhHHHhC---
Confidence 578998888888887764 334559999999999999999998764 1 677777664211 1111111111
Q ss_pred ccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-CCceEEEEecCC-cc----cchhhhcce--eEEEecCC
Q 021959 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALICNQV-NK----IIPALQSRC--TRFRFAPL 200 (305)
Q Consensus 132 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~-~~----l~~~l~~r~--~~i~~~~~ 200 (305)
+.++++|||++.++.+.+..|++++++.. .++++|++++.. .. +.+.+..|+ ..+.++|+
T Consensus 75 ---------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 75 ---------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp ---------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred ---------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 14799999999999999999999998763 467788887643 22 445666665 44667665
No 83
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=3.8e-12 Score=110.39 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=117.5
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC-----cChhHHHHHH
Q 021959 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-----RGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i 125 (305)
....++|++..++.|.. +.. +.++|+||+|+|||++++.+++.... .++.+++... .........+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 34678999999999999 765 57999999999999999999998732 2344443321 1222222222
Q ss_pred HHhhh--------------cc----------cc------cCC---------CCC-ceEEEEEeCCCcCCH----HHHHHH
Q 021959 126 QDFAS--------------TQ----------SF------SFG---------VKA-SVKLVLLDEADAMTK----DAQFAL 161 (305)
Q Consensus 126 ~~~~~--------------~~----------~~------~~~---------~~~-~~~vliiDe~~~l~~----~~~~~l 161 (305)
..... .. .+ ... ... ++.+|+|||+|.+.. +....|
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 11110 00 00 000 001 378999999999864 233444
Q ss_pred HHHHHHhcCCceEEEEecCCccc---------chhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 021959 162 RRVIEKYTKNTRFALICNQVNKI---------IPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (305)
Q Consensus 162 ~~~l~~~~~~~~iil~~~~~~~l---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
..+.+.. .+..+|++++....+ ...+..|. ..+.+.|++.++..+++...+...+...++. ..+++.
T Consensus 162 ~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~ 238 (357)
T 2fna_A 162 AYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEK 238 (357)
T ss_dssp HHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHH
T ss_pred HHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHH
Confidence 4444543 367777777643211 12244454 6899999999999999998877667666544 889999
Q ss_pred cCCCHHHHHHHHHH
Q 021959 232 CNGDMRKALNILQS 245 (305)
Q Consensus 232 ~~g~~r~~~~~l~~ 245 (305)
++|+|..+...+..
T Consensus 239 t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 239 IGGIPGWLTYFGFI 252 (357)
T ss_dssp HCSCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHH
Confidence 99999987666554
No 84
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.46 E-value=2.1e-12 Score=112.48 Aligned_cols=192 Identities=18% Similarity=0.239 Sum_probs=129.5
Q ss_pred ccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021959 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
.++|.+.....+...+.. .....++++|++|+||+.+++.+....... ..++.++|..... ..+...+... ..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~---~~fv~vnc~~~~~-~~~~~~lfg~-~~ 204 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK---GAFVDLNCASIPQ-ELAESELFGH-EK 204 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC---SCEEEEESSSSCT-TTHHHHHHEE-CS
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc---CCcEEEEcccCCh-HHHHHHhcCc-cc
Confidence 567777766666555432 222349999999999999999998876332 2388999987432 2222222111 11
Q ss_pred ccccCCC--------CCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccc
Q 021959 132 QSFSFGV--------KASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (305)
Q Consensus 132 ~~~~~~~--------~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~ 185 (305)
..|.+.. .+.+++|||||++.++...|..|++++++.. .++++|.+|+.. ..+.
T Consensus 205 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred cccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 1122211 1345799999999999999999999999642 256788887643 2344
Q ss_pred hhhhcce--eEEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021959 186 PALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 186 ~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
+++..|+ ..++++|+.+ +++..++...+. +.+ ..+++++++.+..+. +||+|.+.+.++.++...
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 5677776 4577888876 566555444443 333 358999999999877 999999999999887643
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=1.1e-14 Score=134.25 Aligned_cols=205 Identities=17% Similarity=0.197 Sum_probs=119.6
Q ss_pred cccccchHHHHHHHHHHhcCCCC-----------eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021959 53 ADVAAHRDIVDTIDRLTSENRLP-----------HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~~~-----------~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
..++|++.++..+...+.++... +++|+||||||||++|+++++.+....+... ...++.... ....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~-~~~~~~~l~-~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG-KGSTAAGLT-AAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT-TCSTTTTSE-EECS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC-Ccccccccc-ceee
Confidence 46889999888887666655311 6999999999999999999987622111000 000011000 0000
Q ss_pred HHHHHHhhhcccccCC--CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------------CCceEEEEecCCc----
Q 021959 122 RQQIQDFASTQSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN---- 182 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~iil~~~~~~---- 182 (305)
... .........+ ..+.+++++|||++.++++.+..|+..+++.. .++.+|.++|...
T Consensus 373 ~~~---~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~ 449 (595)
T 3f9v_A 373 REK---GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYI 449 (595)
T ss_dssp SGG---GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSC
T ss_pred ecc---ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccC
Confidence 000 0000000000 01225899999999999999999999998532 3456777777654
Q ss_pred ---------ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHc-------------------------CCCCCHHHHHH
Q 021959 183 ---------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE-------------------------GLDVTEGGLAA 227 (305)
Q Consensus 183 ---------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~~~~ 227 (305)
.+++++.+|| ..+.+.+++..+...+........ ...+++++.+.
T Consensus 450 ~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~ 529 (595)
T 3f9v_A 450 SERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNL 529 (595)
T ss_dssp TTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHH
T ss_pred cccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7889999999 455555555444444444433221 12455555666
Q ss_pred HHHH---------------cCCCHHHHHHHHHHHhh-----ccCccCHHHHHhhh
Q 021959 228 LVRL---------------CNGDMRKALNILQSTHM-----ASQQITEEAVYLCT 262 (305)
Q Consensus 228 l~~~---------------~~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 262 (305)
|.++ .++++|.+.+++..+.. ....++.+++.+++
T Consensus 530 l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 530 ITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 6655 35677777766654332 22457777766654
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.45 E-value=7.8e-13 Score=126.15 Aligned_cols=180 Identities=21% Similarity=0.284 Sum_probs=124.3
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
...+..|++++|++..++.|.+++.. ..+.+++|+||||||||+++++++..+ ...++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 34566899999999999998888763 234459999999999999999999876 445677765
Q ss_pred CCC--cChh----HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhc--CCce
Q 021959 113 SDD--RGID----VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTR 173 (305)
Q Consensus 113 ~~~--~~~~----~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~ 173 (305)
... .... .+...+...... .+.++++||++.+.. .....|+.+++... ..+.
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHH---------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhc---------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 431 1112 223333333221 258999999987742 23566777777543 3456
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 021959 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 240 (305)
++.+++....+++.+.+ |+ ..+.+..|+.++..+++...+...... .+..+..++..+.|.....+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHH
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHH
Confidence 77778888888888887 77 668999999999999998776544332 22235667777776554433
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.44 E-value=5.6e-12 Score=110.59 Aligned_cols=204 Identities=19% Similarity=0.202 Sum_probs=135.4
Q ss_pred ccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhh
Q 021959 52 LADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (305)
+..++|.+..++.+...+.. .....++++|++|+||+++++.+...... ....++.++|+.. ....+...+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r--~~~~fv~v~~~~~-~~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASI-PRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTS-CHHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC--CCCCeEEEecCCC-CHHHHHHHhcCCC
Confidence 45677777777776666553 22234899999999999999999886422 2456888898863 2222222222111
Q ss_pred hcccccCCC--------CCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cc
Q 021959 130 STQSFSFGV--------KASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (305)
Q Consensus 130 ~~~~~~~~~--------~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~ 183 (305)
. ..|.+.. .+.+++|||||++.++.+.|..|++++++.. .++++|.+|+.. ..
T Consensus 213 ~-g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 213 K-GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp T-TSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred C-CCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 1 1122211 2346799999999999999999999999632 356788888653 23
Q ss_pred cchhhhcce--eEEEecCCCH--HHHHHHHHHHH----HHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc-
Q 021959 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (305)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~- 250 (305)
+.+.+..|+ ..+++||+.. +++..++...+ .+.+. .+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 455666665 4567777764 55554444433 33443 37899999998776 899999999999887644
Q ss_pred -CccCHHHHH
Q 021959 251 -QQITEEAVY 259 (305)
Q Consensus 251 -~~i~~~~v~ 259 (305)
..|+.+++-
T Consensus 372 ~~~i~~~~l~ 381 (387)
T 1ny5_A 372 GKFIDRGELS 381 (387)
T ss_dssp SSEECHHHHH
T ss_pred CCcCcHHHCc
Confidence 347777664
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.40 E-value=3.9e-15 Score=141.89 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=107.5
Q ss_pred CCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
....|+++.|.+..++.+...+.. ....+++|+||||||||+++++++..+. ..++.+++..
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~ 546 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPE 546 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCCSS
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEechH
Confidence 345788999999999999887652 1234599999999999999999999983 3445555443
Q ss_pred C------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHh--cCCc
Q 021959 115 D------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKNT 172 (305)
Q Consensus 115 ~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~ 172 (305)
. .....+...+....... ++++||||+|.+.. ...+.|+..++.. ..++
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~---------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 617 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHC---------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CC
T ss_pred hhhhhcCccHHHHHHHHHHHHhcC---------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCe
Confidence 2 12234444444443322 47999999998731 1234444444432 2356
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHc
Q 021959 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
.+|.+||.++.+++++.+ || ..+.++.|+.++..++++.++...
T Consensus 618 ~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp BCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred EEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 677788999999999998 88 589999999999999998876443
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.38 E-value=1.6e-12 Score=101.89 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=82.4
Q ss_pred hhcCCCCcccccc----chHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCCCc
Q 021959 45 EKYRPQSLADVAA----HRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDR 116 (305)
Q Consensus 45 ~~~~p~~~~~~~g----~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~ 116 (305)
++|++.+|+++++ +...++.+..++... ....++|+||+|+||||++++++..+. ..+....++..
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~------ 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT------ 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH------
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH------
Confidence 5788899999986 556666777776653 234599999999999999999999885 33333333321
Q ss_pred ChhHHHHHHHHhhhccccc--CCCCCceEEEEEeCCC--cCCHHHHHHHHHHHHHhc-CCceEEEEecCCcc
Q 021959 117 GIDVVRQQIQDFASTQSFS--FGVKASVKLVLLDEAD--AMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~--~~~~~~~~vliiDe~~--~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~~ 183 (305)
..+...+.......... ...-.++.+|+|||++ .+.......|..+++... .+..+|++++....
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 76 --KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp --HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred --HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 11111111111100000 0000136899999998 567777888888887654 45677778876543
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.21 E-value=5.1e-11 Score=95.01 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=75.5
Q ss_pred chhhhcCCCCccccccch----HHHHHHHHHHhcCC----CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 42 PWVEKYRPQSLADVAAHR----DIVDTIDRLTSENR----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~----~~~~~l~~~l~~~~----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
.++.++.+.+|+++++.. ..++.+..++.... ..+++|+||+|+|||++++++++.+...+.. ++.+++.
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~--~~~~~~~ 91 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVS--SLIVYVP 91 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCC--EEEEEHH
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEhH
Confidence 355677788999998744 35556667766542 1569999999999999999999998665443 3333322
Q ss_pred CCcChhHHHHHHHHhhhcccccC--CCCCceEEEEEeCCCcCCHH--HHHHHH-HHHHHh-cCCceEEEEecCC
Q 021959 114 DDRGIDVVRQQIQDFASTQSFSF--GVKASVKLVLLDEADAMTKD--AQFALR-RVIEKY-TKNTRFALICNQV 181 (305)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--~~~~l~-~~l~~~-~~~~~iil~~~~~ 181 (305)
. +...+........... ..-....+|+|||++..... .+..++ .+++.. .....+|++++..
T Consensus 92 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 92 E------LFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp H------HHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred H------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 1111110000000000 00011369999999775433 244343 466643 4566788888754
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.20 E-value=7.4e-11 Score=105.95 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=80.3
Q ss_pred CCCCCCcchhhhcCCCCccccc-cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 35 PPDIKASPWVEKYRPQSLADVA-AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
..+.++.||+.+|+|.+|+++- +|.+.+..+...+..+.. .++|.|++|||||+++.+++..+.+.+.. .++.+ +.
T Consensus 6 ~~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~-~il~~-a~ 82 (459)
T 3upu_A 6 HHHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGET-GIILA-AP 82 (459)
T ss_dssp ---------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCC-CEEEE-ES
T ss_pred CCCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCc-eEEEe-cC
Confidence 3456889999999999999887 688888888888777653 79999999999999999999998665441 12222 22
Q ss_pred CCcChhHHHHHH-------HHhhhccc--------c---cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEE
Q 021959 114 DDRGIDVVRQQI-------QDFASTQS--------F---SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (305)
Q Consensus 114 ~~~~~~~~~~~i-------~~~~~~~~--------~---~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~ii 175 (305)
.......+.+.+ ........ + ......+..+|+|||++.++......|...+. ....++
T Consensus 83 T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~ 159 (459)
T 3upu_A 83 THAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTII 159 (459)
T ss_dssp SHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEE
T ss_pred cHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEE
Confidence 222222222222 11111000 0 01112346899999999999877766666553 466788
Q ss_pred EEecCC
Q 021959 176 LICNQV 181 (305)
Q Consensus 176 l~~~~~ 181 (305)
++++..
T Consensus 160 ~vGD~~ 165 (459)
T 3upu_A 160 GIGDNK 165 (459)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 887543
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=3.8e-11 Score=90.75 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCc
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~ 152 (305)
....++|+||+|+|||+++++++..+...+. ..+.++....... .. ..++.+++|||++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~--~~~~~~~~~~~~~--------~~----------~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK--NAAYIDAASMPLT--------DA----------AFEAEYLAVDQVEK 94 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC--CEEEEETTTSCCC--------GG----------GGGCSEEEEESTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEcHHHhhHH--------HH----------HhCCCEEEEeCccc
Confidence 4456999999999999999999998865432 3455554432222 00 11268999999999
Q ss_pred CCHHHHHHHHHHHHHhcC-Cce-EEEEecCCcc-c--chhhhcce
Q 021959 153 MTKDAQFALRRVIEKYTK-NTR-FALICNQVNK-I--IPALQSRC 192 (305)
Q Consensus 153 l~~~~~~~l~~~l~~~~~-~~~-iil~~~~~~~-l--~~~l~~r~ 192 (305)
+....+..|+.+++.... ... +|++++.... + .+++.+|+
T Consensus 95 ~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHH
Confidence 987778889898886432 233 7777764322 1 27888886
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.13 E-value=9.6e-11 Score=99.50 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=74.1
Q ss_pred chhhhcCCCCccccccch----HHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecC
Q 021959 42 PWVEKYRPQSLADVAAHR----DIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNAS 113 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~----~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~ 113 (305)
.++..+.+.+|++|++.. ..+..+..++.... ..+++|+||+|+|||+++.++++.+. ..+....++. .+
T Consensus 113 ~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~--~~ 190 (308)
T 2qgz_A 113 SLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH--FP 190 (308)
T ss_dssp SSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE--HH
T ss_pred CCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE--HH
Confidence 344556678899998633 35556667776532 45699999999999999999999886 5554433333 21
Q ss_pred CCcChhHHHHHHHHhhhcccccC--CCCCceEEEEEeCCCcCCH--HHHHHH-HHHHHHh-cCCceEEEEecCC
Q 021959 114 DDRGIDVVRQQIQDFASTQSFSF--GVKASVKLVLLDEADAMTK--DAQFAL-RRVIEKY-TKNTRFALICNQV 181 (305)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~--~~~~~l-~~~l~~~-~~~~~iil~~~~~ 181 (305)
.+...+........... ..-.+..+|+|||++.... ..+..+ ..+++.. ..+..+|++||..
T Consensus 191 ------~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 ------SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ------HHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ------HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 11111111000000000 0001247999999966543 233334 4466643 3456788888754
No 94
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.10 E-value=2.3e-09 Score=87.90 Aligned_cols=138 Identities=16% Similarity=0.217 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcC-C-CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCC
Q 021959 60 DIVDTIDRLTSEN-R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (305)
Q Consensus 60 ~~~~~l~~~l~~~-~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (305)
.....+..++.+. . ..+++|+||||||||.++.++++.+. .+..++.... .+...
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~------l~G~vn~~~~-----------------~f~l~ 144 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP------FYGCVNWTNE-----------------NFPFN 144 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS------CEEECCTTCS-----------------SCTTG
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc------ccceeecccc-----------------ccccc
Confidence 3445677777765 3 33599999999999999999999741 1222222110 01111
Q ss_pred CCCceEEEEEeCCCcCCHHHHHHHHHHHH--------Hhc-----CCceEEEEecCC-----------cccchhhhccee
Q 021959 138 VKASVKLVLLDEADAMTKDAQFALRRVIE--------KYT-----KNTRFALICNQV-----------NKIIPALQSRCT 193 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~~~~~l~~~l~--------~~~-----~~~~iil~~~~~-----------~~l~~~l~~r~~ 193 (305)
.-..+.+++.||..... +..+.+..+++ ... ..+++|+++|.. ....+.|++|+.
T Consensus 145 ~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~ 223 (267)
T 1u0j_A 145 DCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMF 223 (267)
T ss_dssp GGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEE
T ss_pred cccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEE
Confidence 11124566666665544 45556666666 222 466888888751 245578999999
Q ss_pred EEEec--------CCCHHHHHHHHHHHHHHcCCCCCH
Q 021959 194 RFRFA--------PLEPVHVTERLKHVIEAEGLDVTE 222 (305)
Q Consensus 194 ~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 222 (305)
.+.|. +++.+++..++. .++.+..++++
T Consensus 224 ~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~ 259 (267)
T 1u0j_A 224 KFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEH 259 (267)
T ss_dssp EEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCC
T ss_pred EEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCcc
Confidence 99998 899999999997 44666655543
No 95
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.08 E-value=2.5e-09 Score=99.18 Aligned_cols=185 Identities=13% Similarity=0.129 Sum_probs=109.2
Q ss_pred CCCCccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHh--CCCC--cccEEEeecCCCcChhHH
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLY--GAQY--HNMILELNASDDRGIDVV 121 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~--~~~~~~~~~~~~~~~~~~ 121 (305)
.|.....++|++..++.|...+.. +..+.+.|+|++|+|||++|..+++... ...+ ...++.+... ....+
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~---~~~~~ 195 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ---DKSGL 195 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC---CHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC---chHHH
Confidence 356667899999999999999974 3334589999999999999999975321 1112 2333444332 12222
Q ss_pred HHHHHHhhhccc----c-c-CC---------------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 122 RQQIQDFASTQS----F-S-FG---------------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 122 ~~~i~~~~~~~~----~-~-~~---------------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
...+........ . . .. ...++.+|||||++.. . .++..+....+|+||..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCC
Confidence 222222111100 0 0 00 0114689999999852 1 23344567788888765
Q ss_pred CcccchhhhcceeEEE-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 021959 181 VNKIIPALQSRCTRFR-FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 181 ~~~l~~~l~~r~~~i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 246 (305)
.... .........+. ..+++.++..+++...+.... .-..+....|++.|+|.|-.+......+
T Consensus 267 ~~~~-~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 267 KSVT-DSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp GGGG-TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHH-HhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4321 11112222222 258999999999988764311 1124567899999999988776555444
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.03 E-value=7.9e-10 Score=86.57 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhcCCC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCC
Q 021959 59 RDIVDTIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (305)
...+..+..++.+-+. .+++++||||+|||+++.++++.+.. .++.+..... ... . ..+.
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g-----~i~~fans~s-~f~---------l--~~l~-- 102 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG-----AVISFVNSTS-HFW---------L--EPLT-- 102 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC-----EECCCCCSSS-CGG---------G--GGGT--
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CeeeEEeccc-hhh---------h--cccC--
Confidence 3456677777765322 25999999999999999999999832 1222111100 000 0 0001
Q ss_pred CCCceEEEEEeCCCcCCHHH-HHHHHHHHHHhc-------------CCceEEEEecCC---cccchhhhcceeEEEecC
Q 021959 138 VKASVKLVLLDEADAMTKDA-QFALRRVIEKYT-------------KNTRFALICNQV---NKIIPALQSRCTRFRFAP 199 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~-------------~~~~iil~~~~~---~~l~~~l~~r~~~i~~~~ 199 (305)
+..+++|||++.-..+. ...+..+++..+ ...++|++||.. ....+.+.+|+..+.|+.
T Consensus 103 ---~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~ 178 (212)
T 1tue_A 103 ---DTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPN 178 (212)
T ss_dssp ---TCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCS
T ss_pred ---CCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCC
Confidence 14699999998432222 235566666532 245788898763 334578999998887763
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.00 E-value=3.3e-09 Score=111.00 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=100.0
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc-----ccCC-C
Q 021959 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-----FSFG-V 138 (305)
Q Consensus 65 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~-~ 138 (305)
+..++..+ .+++|+||||||||++|+.++... ....+..++.+.......+...+........ ..++ .
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~ 1333 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS 1333 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC
Confidence 34444444 469999999999999997766543 2345667777766666666666665432211 1111 1
Q ss_pred CCceEEEEEeCCCcCCH------HHHHHHHHHHHHhc------------CCceEEEEecCC-----cccchhhhcceeEE
Q 021959 139 KASVKLVLLDEADAMTK------DAQFALRRVIEKYT------------KNTRFALICNQV-----NKIIPALQSRCTRF 195 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~~------~~~~~l~~~l~~~~------------~~~~iil~~~~~-----~~l~~~l~~r~~~i 195 (305)
..++.|+||||++.... ...+.|.++++... .+..+|.++|.+ ..+++++.+||.++
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 34568999999776432 35677788887421 235667777776 36899999999999
Q ss_pred EecCCCHHHHHHHHHHHHHH
Q 021959 196 RFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~ 215 (305)
.++.|+.+++..++..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 98
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.99 E-value=4e-09 Score=92.68 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=117.8
Q ss_pred cccchHHHHHHHHHHhcCC-----CCeEEEECCCCCcHHHHHHHH-HHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021959 55 VAAHRDIVDTIDRLTSENR-----LPHLLLYGPPGTGKTSTILAV-ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
+.|++.++..+.-.+.++. ..|++|.|+||+ ||.+++.+ ++.. . ...+.....+. ...+...+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p---R~~ft~g~~ss---~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-P---RGVYVDLRRTE---LTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-S---SEEEEEGGGCC---HHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-C---CeEEecCCCCC---ccCceEEEEcC
Confidence 8899998888877776663 126999999999 99999999 6543 1 11222111111 00000000000
Q ss_pred hhcccccCC--CCCceEEEEEeCCCcCCHHHHHHHHHHHHHh---------cCCceEEEEecCCc-----------ccch
Q 021959 129 ASTQSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKY---------TKNTRFALICNQVN-----------KIIP 186 (305)
Q Consensus 129 ~~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---------~~~~~iil~~~~~~-----------~l~~ 186 (305)
.. ..+..+ ..+..+++++||++.++...+..|++.+++. +.+..++.++|... .+++
T Consensus 287 tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 287 RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 00 000000 1134689999999999999999999999964 45667777777653 6788
Q ss_pred hhhcceeE-EE-ec-------------CCCHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHc------------------
Q 021959 187 ALQSRCTR-FR-FA-------------PLEPVHVTERLKHVI-EAEGLDVTEGGLAALVRLC------------------ 232 (305)
Q Consensus 187 ~l~~r~~~-i~-~~-------------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~------------------ 232 (305)
++.+||.. +. .. .++.+++.+++...- ......+++++.+.|+++.
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~ 445 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTL 445 (506)
T ss_dssp HHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 99999833 22 22 234455555554432 1235678888777666432
Q ss_pred CCCHHHHHHHHHHHhh-----ccCccCHHHHHhhh
Q 021959 233 NGDMRKALNILQSTHM-----ASQQITEEAVYLCT 262 (305)
Q Consensus 233 ~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 262 (305)
+-++|.+..++..+-. ....++++||++++
T Consensus 446 giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 446 PVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAA 480 (506)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHH
Confidence 2345666655533222 23457777776665
No 99
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.98 E-value=9e-09 Score=94.49 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=106.4
Q ss_pred CCCccccccchHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHHH---HhCCCCcccEEEeecCCCc--Chh-
Q 021959 49 PQSLADVAAHRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARK---LYGAQYHNMILELNASDDR--GID- 119 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~---~~~~~~~~~~~~~~~~~~~--~~~- 119 (305)
|.....+ |++..++.|.+++... ....+.|+|++|+||||+|+.+++. .....+. ..+.++.+... +..
T Consensus 125 p~~~~~~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 125 PKQMTCY-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp BCCCCSC-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHH
T ss_pred CCCCccC-CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHH
Confidence 4333334 9999999999998654 3344889999999999999999972 2222222 22333333321 122
Q ss_pred HHHHHHHHhhhcc---ccc---C------------CCCCc-eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 120 VVRQQIQDFASTQ---SFS---F------------GVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 120 ~~~~~i~~~~~~~---~~~---~------------~~~~~-~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.....+..+.... ... . ....+ +.+|||||++.... . .+. .. ....+|+||+.
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~~----~~-~gs~ilvTTR~ 274 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RWA----QE-LRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HHH----HH-TTCEEEEEESB
T ss_pred HHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-ccc----cc-CCCEEEEEcCC
Confidence 2222333222110 000 0 01243 78999999998431 1 111 11 46778777765
Q ss_pred CcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Q 021959 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL-DVTEGGLAALVRLCNGDMRKALNI 242 (305)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~ 242 (305)
.. ...........+.+++++.++..+++...+..... .-..+....|++.|+|.|-.+...
T Consensus 275 ~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 275 VE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp GG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH-HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 32 22222112356899999999999998876422111 111246788999999988776654
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.91 E-value=9.2e-08 Score=100.41 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCC
Q 021959 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 61 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
....+...+..+. ..++.||+|||||++++.+++.+ +..++.++|........+...+..+...
T Consensus 634 ~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~~--------- 697 (2695)
T 4akg_A 634 GFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQI--------- 697 (2695)
T ss_dssp HHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHhc---------
Confidence 3344455554442 37899999999999999999998 6678888999888877776666655443
Q ss_pred ceEEEEEeCCCcCCHHHHHHHHHHHH-------Hh-------------cCCceEEEEec----CCcccchhhhcceeEEE
Q 021959 141 SVKLVLLDEADAMTKDAQFALRRVIE-------KY-------------TKNTRFALICN----QVNKIIPALQSRCTRFR 196 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~~l~~~l~-------~~-------------~~~~~iil~~~----~~~~l~~~l~~r~~~i~ 196 (305)
+..+++||++++..+....+...+. +. .+...+++|.| ....+++.+++||+.+.
T Consensus 698 -Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~ 776 (2695)
T 4akg_A 698 -GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFS 776 (2695)
T ss_dssp -TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEE
T ss_pred -CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEE
Confidence 4799999999999988776633332 21 12344666666 34578999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------c------CCCHHHHHHHHHHHh
Q 021959 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL-------C------NGDMRKALNILQSTH 247 (305)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-------~------~g~~r~~~~~l~~~~ 247 (305)
+..|+.+.+.+++... .|+.........++.. . ...+|.+...|..+.
T Consensus 777 m~~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 777 MKSPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp CCCCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 9999998888876432 3554444444433321 1 135788877776543
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.87 E-value=1.1e-07 Score=95.31 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=111.8
Q ss_pred CCCCccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHH--hCCCCcccEEEeecCCCcChhHHHH
Q 021959 48 RPQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKL--YGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
.|.....|+|++..++.|...+... ....+.|+|++|+|||+||..+++.. ....+...++.++..... ......
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 197 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLM 197 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHH
Confidence 4556678999999999999999643 33448899999999999999987753 122233233333333211 111111
Q ss_pred HHHH----hhhccccc-----------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 124 QIQD----FASTQSFS-----------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 124 ~i~~----~~~~~~~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.+.. +....... ...+.++.+|||||++... .++...+..++|+||+...
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhhcCCCEEEEEcCCHH
Confidence 1111 11110000 0011337899999998531 1233355778888887643
Q ss_pred ccchhhhcceeEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 021959 183 KIIPALQSRCTRFRFAP-LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 183 ~l~~~l~~r~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 246 (305)
-. .........+.+++ ++.++..+++...+...... ..+....|++.|+|.|-.+......+
T Consensus 269 ~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 269 VT-DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp TT-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HH-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 22 12222335677875 99999999998776333222 23567889999999887666554444
No 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.72 E-value=4.5e-07 Score=87.13 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=95.8
Q ss_pred ccchHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHH-hCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc
Q 021959 56 AAHRDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (305)
Q Consensus 56 ~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (305)
+|++..++.|.+++.. ...+.+.|+|++|+||||+|+.+++.. ....+...++.++.........+...+........
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 8999999999999876 334458999999999999999998632 01112222222333322223232222222111000
Q ss_pred --cc------------------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchh
Q 021959 134 --FS------------------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187 (305)
Q Consensus 134 --~~------------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~ 187 (305)
+. .....++.+|||||++. .+.... .+...++|+||+...... .
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~-------f~pGSRILVTTRd~~Va~-~ 280 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA-------FNLSCKILLTTRFKQVTD-F 280 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH-------HHSSCCEEEECSCSHHHH-H
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh-------hCCCeEEEEeccChHHHH-h
Confidence 00 00124578999999998 222222 235778888887654321 1
Q ss_pred hh-cceeEEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021959 188 LQ-SRCTRFRFA----PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 188 l~-~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
+. .+...+.++ +++.++..+++...+ +.. ..+.. .+.|+|.|-.+.-...
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~---g~~-~eeL~---~eICgGLPLALkLaGs 335 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCR-PQDLP---REVLTTNPRRLSIIAE 335 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHH---CCC-TTTHH---HHHCCCCHHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHc---CCC-HHHHH---HHHhCCCHHHHHHHHH
Confidence 11 112334444 789999999988773 222 22222 2347787765544433
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.69 E-value=1.9e-07 Score=98.79 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=99.2
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcc------cccCC
Q 021959 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ------SFSFG 137 (305)
Q Consensus 64 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~ 137 (305)
-+..++..+ .+++|+||+|||||.++..+...+ ....++.++.+.......+...+....... .+..+
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAF----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGC----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhC----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCC
Confidence 344444444 349999999999999887766543 234567788877777777777665433211 11222
Q ss_pred C-CCceEEEEEeCCCcCCH------HHHHHHHHHHHHhc------------CCceEEEEecCC-----cccchhhhccee
Q 021959 138 V-KASVKLVLLDEADAMTK------DAQFALRRVIEKYT------------KNTRFALICNQV-----NKIIPALQSRCT 193 (305)
Q Consensus 138 ~-~~~~~vliiDe~~~l~~------~~~~~l~~~l~~~~------------~~~~iil~~~~~-----~~l~~~l~~r~~ 193 (305)
. ..+..|+||||++.-.. ...+.|..+++... .+..+|.+++.+ ..+.+++.+||.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 2 25578999999986553 35677888887421 234566666654 458899999999
Q ss_pred EEEecCCCHHHHHHHHHHHHH
Q 021959 194 RFRFAPLEPVHVTERLKHVIE 214 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~ 214 (305)
++.++.|+.+.+..++..+..
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999998776554
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.60 E-value=3.2e-06 Score=89.78 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCC
Q 021959 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 61 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
..-.|...+....+ ..+.||+|||||.+++.+++.+ +..++.++|........+...+..+...
T Consensus 593 cy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~l-----gr~~~vfnC~~~~d~~~~g~i~~G~~~~--------- 656 (3245)
T 3vkg_A 593 CYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQL-----GRFVLVFCCDEGFDLQAMSRIFVGLCQC--------- 656 (3245)
T ss_dssp HHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHT-----TCCEEEEECSSCCCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHh-----CCeEEEEeCCCCCCHHHHHHHHhhHhhc---------
Confidence 33455555554432 5689999999999999999998 5677888998877777666655555443
Q ss_pred ceEEEEEeCCCcCCHHHHHHHHHHHH-------Hh--------------cCCceEEEEecC----CcccchhhhcceeEE
Q 021959 141 SVKLVLLDEADAMTKDAQFALRRVIE-------KY--------------TKNTRFALICNQ----VNKIIPALQSRCTRF 195 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~~l~~~l~-------~~--------------~~~~~iil~~~~----~~~l~~~l~~r~~~i 195 (305)
+...++||++++..+....+...+. .. .+...+++|.|. ...+++.++.+|+.+
T Consensus 657 -GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v 735 (3245)
T 3vkg_A 657 -GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSM 735 (3245)
T ss_dssp -TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEE
T ss_pred -CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEE
Confidence 4688999999999887766555443 11 123455666653 357899999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---Hc----------CCCHHHHHHHHHHHhh
Q 021959 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR---LC----------NGDMRKALNILQSTHM 248 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~----------~g~~r~~~~~l~~~~~ 248 (305)
.+..|+.+.+.+++ +...|+.-.......++. .| .-.+|.+...|..+..
T Consensus 736 ~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~ 798 (3245)
T 3vkg_A 736 AMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGG 798 (3245)
T ss_dssp ECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Confidence 99999999888876 334566433444333332 22 2348888888876553
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.57 E-value=7.2e-08 Score=75.34 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=57.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhh------cccccCCCCCceEEEEEeC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS------TQSFSFGVKASVKLVLLDE 149 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~vliiDe 149 (305)
..+++||+|+||||++..++......+....++........+...+......... ...+......+..+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 4789999999999999777766644444333322111000000000000000000 0000000112478999999
Q ss_pred CCcCCHHHHHHHHHHHHHhcCCceEEEEecC------Ccccchhhhcce
Q 021959 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQ------VNKIIPALQSRC 192 (305)
Q Consensus 150 ~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~------~~~l~~~l~~r~ 192 (305)
++.+.++....+..+.+. +..+++++.. .....+.+.++.
T Consensus 85 ~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~a 130 (184)
T 2orw_A 85 VQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLA 130 (184)
T ss_dssp GGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHh
Confidence 999977666666666654 4556666542 224445555555
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.54 E-value=8e-07 Score=68.94 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=45.8
Q ss_pred eEEEEEeCC---CcCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhcc--eeEEEecCCCHHHHHHHH
Q 021959 142 VKLVLLDEA---DAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSR--CTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 142 ~~vliiDe~---~~l~~~~~~~l~~~l~~~~~~~~iil~~~--~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l 209 (305)
+.++++||+ ..++......+.+++++. ...+++++. +...+...+.+| +.++.+.+.+.+++.+-+
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l 172 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHH
Confidence 689999995 455677788888888762 344666663 344566777777 678888877766555444
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.51 E-value=1.6e-07 Score=74.21 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=39.6
Q ss_pred eEEEEEeCCCcCCH---HHH--HHHHHHHHHh-cCCceEEEEecCCcccchhhhcce-eEEEecCC
Q 021959 142 VKLVLLDEADAMTK---DAQ--FALRRVIEKY-TKNTRFALICNQVNKIIPALQSRC-TRFRFAPL 200 (305)
Q Consensus 142 ~~vliiDe~~~l~~---~~~--~~l~~~l~~~-~~~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~ 200 (305)
+.||+|||+|.+.+ +.. ..++..++.. .....+|+++.....+...++.|+ ..+++.++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 68999999999832 111 1233334332 234578888988888999999997 45677664
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.29 E-value=4.4e-06 Score=70.23 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=39.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe------ecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL------NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~ 150 (305)
++|+||||+|||+++..++.. .+....|+.. +... ...+.....+...... ..+||||++
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~~~~-~~le~~l~~i~~~l~~----------~~LLVIDsI 191 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLSGYN-TDFNVFVDDIARAMLQ----------HRVIVIDSL 191 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSSTTCB-CCHHHHHHHHHHHHHH----------CSEEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhhhhh-cCHHHHHHHHHHHHhh----------CCEEEEecc
Confidence 799999999999999999887 2334455555 1111 1222222222222211 129999999
Q ss_pred CcCCH
Q 021959 151 DAMTK 155 (305)
Q Consensus 151 ~~l~~ 155 (305)
+.+..
T Consensus 192 ~aL~~ 196 (331)
T 2vhj_A 192 KNVIG 196 (331)
T ss_dssp TTTC-
T ss_pred ccccc
Confidence 98853
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.29 E-value=3.3e-06 Score=67.68 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=55.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC--------CcCh-------hHHHHHHHHhhhcccccCCCCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--------DRGI-------DVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
.++++|++|+||||++..++......+....++...... ..+. ....+.+..+.... ...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~-----~~~ 88 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS-----FND 88 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT-----SCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh-----hCC
Confidence 478999999999999999988886555544444211100 0000 00011111111110 112
Q ss_pred ceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021959 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
++.+|+|||++.+..+....+..+.+. ...+++++.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 368999999999987766655544442 567777775
No 110
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.27 E-value=1e-06 Score=70.29 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=85.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcc----cc-----cCC-----CCCc
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ----SF-----SFG-----VKAS 141 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~-----~~~-----~~~~ 141 (305)
.+++.|++|+||||++-.++..+...++...++.++.... ......+....... .+ ... ...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~---~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR---AETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC---HHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC---hhHHHHhcCccccCcceeecCCcccccccHHHHHhcC
Confidence 3899999999999999999999877777665666554221 11111111111100 00 000 1124
Q ss_pred eEEEEEeCCCcCCHH-H--HHHHHHHHHHhcCCceEEEEecCC------------------cccchhhhcceeEEEecCC
Q 021959 142 VKLVLLDEADAMTKD-A--QFALRRVIEKYTKNTRFALICNQV------------------NKIIPALQSRCTRFRFAPL 200 (305)
Q Consensus 142 ~~vliiDe~~~l~~~-~--~~~l~~~l~~~~~~~~iil~~~~~------------------~~l~~~l~~r~~~i~~~~~ 200 (305)
+.+++|||+...+.. . ...+..+.+..+....++.++|-. ..+++.+..++..+.+-.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~ 164 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDL 164 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecC
Confidence 689999998765311 1 112222233344455666666411 2345555566655677677
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHH
Q 021959 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALN 241 (305)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~ 241 (305)
+.+++.+.++ ...+.....+-..+..+. .||+-.+..
T Consensus 165 ~p~~l~~rl~----~g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 165 PPRELLERLR----DGKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp CHHHHHHHHH----TTCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHHH----CCCccChhHHHHHHHhhhchhhHHHHHH
Confidence 7777666543 334444444444444443 355555554
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.12 E-value=2.6e-06 Score=78.25 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH-------HHhhhc
Q 021959 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI-------QDFAST 131 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~ 131 (305)
+.....+...+. .+.++++|+||||||+++..++..+...+.... +.++.......+.+.+ ..+...
T Consensus 192 ~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl---~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~ 265 (574)
T 3e1s_A 192 EEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG---LCAPTGKAARRLGEVTGRTASTVHRLLGY 265 (574)
T ss_dssp HHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE---EEESSHHHHHHHHHHHTSCEEEHHHHTTE
T ss_pred HHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE---EecCcHHHHHHhHhhhcccHHHHHHHHcC
Confidence 334444444442 346899999999999999999998866554322 2222222222222211 111111
Q ss_pred cc--cc--CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 132 QS--FS--FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 132 ~~--~~--~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.+ +. .....+..+|||||+..++......|+. ..+....++++++..
T Consensus 266 ~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~---~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 266 GPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLA---AVPPGARVLLVGDTD 316 (574)
T ss_dssp ETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHT---TSCTTCEEEEEECTT
T ss_pred CcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHH---hCcCCCEEEEEeccc
Confidence 10 10 1122346899999999999776555544 344567888888654
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.04 E-value=1.2e-05 Score=63.52 Aligned_cols=100 Identities=11% Similarity=0.113 Sum_probs=53.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc------ccCCCCCceEEEEEeCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS------FSFGVKASVKLVLLDEA 150 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~vliiDe~ 150 (305)
.+++|+.|+||||.+...+......+....++........+...+.+.+........ +......+..+|+|||+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECc
Confidence 679999999999999888888766665554444221111111122222211100000 00001124689999999
Q ss_pred CcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021959 151 DAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 151 ~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
+.++++..+.+..+.+ .+..+|+++.
T Consensus 111 QF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 111 QFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp GGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 9998776654444333 2567777764
No 113
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.00 E-value=2.5e-05 Score=80.17 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHh-cC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 64 TIDRLTS-EN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 64 ~l~~~l~-~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.|...+. ++ +...++|+||||||||+++.+++.+....+....|+.+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3455555 32 344599999999999999999998876665555454443
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.99 E-value=3.4e-05 Score=60.10 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=66.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-CcChhHH-----------------------------HHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVV-----------------------------RQQ 124 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------------------------~~~ 124 (305)
..+++++.+|.||||+|-.++-+....++...++.+.... ..+...+ ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 4588999999999999999999988888877777654431 0000111 111
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCC------CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 125 IQDFASTQSFSFGVKASVKLVLLDEA------DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~------~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
+....... ....+++||+||+ +.++ .+.++.++...+.+..+|+|++...
T Consensus 109 l~~a~~~l-----~~~~yDlvILDEi~~al~~g~l~---~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRML-----ADPLLDMVVLDELTYMVAYDYLP---LEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHT-----TCTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHH-----hcCCCCEEEEeCCCccccCCCCC---HHHHHHHHHhCcCCCEEEEECCCCc
Confidence 11111111 1234799999998 4455 3458888888888999999998754
No 115
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.92 E-value=2.6e-05 Score=72.18 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=58.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCC--CCcccEEEeecCCCcChhHHHHHHHHhhhc------------------ccc
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGA--QYHNMILELNASDDRGIDVVRQQIQDFAST------------------QSF 134 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~~ 134 (305)
+.++++|+||||||+++..+...+... .....+ .+.++.......+.+.+...... +.+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~v-ll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRI-RLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCE-EEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeE-EEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 458999999999999999988877521 112222 23333323233333333221100 000
Q ss_pred c------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 135 S------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 135 ~------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
. .....+..+|||||++.++......| +...+...++|++++..
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~L---l~~l~~~~~liLvGD~~ 299 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL---IDALPDHARVIFLGDRD 299 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHHHH---HHTCCTTCEEEEEECTT
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHH---HHhCCCCCEEEEEcchh
Confidence 0 00112457999999998885544444 45556678899988654
No 116
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.89 E-value=5.4e-06 Score=64.87 Aligned_cols=91 Identities=13% Similarity=0.213 Sum_probs=52.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChh----------------HHHHHHHHhhhcccccCCCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID----------------VVRQQIQDFASTQSFSFGVK 139 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~ 139 (305)
..+++||.|+||||.+..++......+....++........+.. ...+.+... .
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~----------~ 79 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF----------E 79 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC----------C
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH----------h
Confidence 37899999999999999998887655555444431110000000 000111100 1
Q ss_pred CceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021959 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
.+..+|+|||++.++++....+..+.+. +..+|+++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl 116 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGL 116 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEEC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEec
Confidence 1368999999999987766555444332 556777664
No 117
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.82 E-value=0.00015 Score=57.86 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=54.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCC-----CCCceEEEEEeCCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG-----VKASVKLVLLDEAD 151 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~vliiDe~~ 151 (305)
.+++|+-|+||||.+...+......+....++........+ ..+.+.+........+... ...+..+|+|||++
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQ 100 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 100 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchh
Confidence 68999999999988877777776666655555533222222 2222222110000000000 00236899999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 152 AMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.+.. ...+.+.+.+ .+..+|+++.+
T Consensus 101 F~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 101 FFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 9974 5566677766 35677777643
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.80 E-value=0.00014 Score=56.59 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=49.9
Q ss_pred eEEEECCCCCcHH-HHHHHHHHHHhCCCCcccEEEeecC-CCcChhHHHHHHHHhhhcccccCC-----CCCceEEEEEe
Q 021959 76 HLLLYGPPGTGKT-STILAVARKLYGAQYHNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFG-----VKASVKLVLLD 148 (305)
Q Consensus 76 ~~ll~G~~G~GKT-~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~vliiD 148 (305)
..+++||.|+||| .|++++.+.... +. .++.+.+. +......+.+.+............ ...+..+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~--kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QY--KCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TC--CEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CC--eEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 4789999999999 888888877644 23 33333333 111111122222111000000000 01125799999
Q ss_pred CCCcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021959 149 EADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
|++.+ +++.+.+ +.+.+. +..||+++
T Consensus 99 EaQFf-k~~ve~~-~~L~~~--gk~VI~~G 124 (195)
T 1w4r_A 99 EGQFF-PDIVEFC-EAMANA--GKTVIVAA 124 (195)
T ss_dssp SGGGC-TTHHHHH-HHHHHT--TCEEEEEE
T ss_pred chhhh-HHHHHHH-HHHHHC--CCeEEEEe
Confidence 99999 6544444 444432 45666665
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.79 E-value=0.00017 Score=63.51 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.++++|++|+||||++..++..+...+....++..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3789999999999999999999877666655555543
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=0.00013 Score=58.57 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.++|.||+|+||||+++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999997664
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.77 E-value=0.00021 Score=61.44 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=29.9
Q ss_pred HHHHHHh-cCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021959 64 TIDRLTS-ENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 64 ~l~~~l~-~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
.|...+. ++- ...++|+||||+|||+++..++..+...+....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444554 332 23389999999999999999987765444333333
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.74 E-value=0.00046 Score=54.92 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.++|+||+|+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999988
No 123
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.74 E-value=0.00039 Score=61.29 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=29.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.++++|++|+||||++..++..+...+....++..+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 388999999999999999999998776655555443
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.72 E-value=0.0003 Score=60.74 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHh-cCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021959 64 TIDRLTS-ENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 64 ~l~~~l~-~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
.|...+. ++- ...++|+|+||+|||+++..++..+...+....++
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi 108 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 108 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4455554 232 22388999999999999999988765444333333
No 125
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.69 E-value=0.00024 Score=55.40 Aligned_cols=24 Identities=46% Similarity=0.782 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999874
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.66 E-value=0.00013 Score=62.76 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
.++|+|+||+|||+++..++..+...+....++
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 97 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 97 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 389999999999999999998775444333333
No 127
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.66 E-value=0.00034 Score=60.01 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHh-cCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 64 TIDRLTS-ENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 64 ~l~~~l~-~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.|...+. ++-.+ .++|+||||+||||++..++..+...+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4555555 33222 378999999999999999998875433
No 128
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.63 E-value=5e-05 Score=64.13 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.++|+||+|+|||+++..+++.+ ...++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 48999999999999999999987 345555543
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=0.00063 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|+||+|+|||+++..++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999864
No 130
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.60 E-value=0.00034 Score=57.95 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=32.6
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-C-CceEEEEecCCcc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-K-NTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~-~~~iil~~~~~~~ 183 (305)
.++.++++|| .-.++......+.+++.+.. . ...+|+++.+...
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 5678999999 56788888888888887654 2 4566777766543
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.60 E-value=0.00054 Score=55.50 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++...+.+..++.. ..++++||+|+|||.++..++...
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 33334444444443 248999999999999998888765
No 132
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.59 E-value=0.0002 Score=63.20 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++++|+||+||||+++.+++.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 348899999999999999998865
No 133
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.58 E-value=0.0004 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 554
No 134
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.56 E-value=0.00022 Score=58.04 Aligned_cols=21 Identities=38% Similarity=0.456 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+.|.||+|+||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 135
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=0.00097 Score=57.32 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.+++.||+|+||||++++++..+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 5899999999999999999988753
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.00065 Score=55.03 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++|+||+|+|||+++..++.....
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999998888776543
No 137
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.54 E-value=7e-05 Score=59.10 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=49.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc------ccccCCCCCceEEEEEeCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST------QSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~vliiDe~ 150 (305)
.+++|+-|+||||.+-..+......+....++........+...+.+.+...... ..+......+..+|+|||+
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~IDEa 110 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGIDEV 110 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEECCG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEEech
Confidence 6899999999999554444554444444333322111111111111100000000 0000001235689999999
Q ss_pred CcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021959 151 DAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 151 ~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
+.++++....+..+.+ .+..+++.+
T Consensus 111 QFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 111 QFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp GGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred hcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 9999887777777763 245566555
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.54 E-value=0.00033 Score=60.61 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| .-.++......++..+.+... ...+|++|.+..
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4578999999 677888888888888876532 456667776543
No 139
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.53 E-value=0.00041 Score=57.22 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=30.8
Q ss_pred ceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021959 141 SVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~ 181 (305)
++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 799999999 567888888889988876542 33566666554
No 140
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.53 E-value=0.00039 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+||+|+||||+++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998875
No 141
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.53 E-value=0.0033 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 142
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=0.0014 Score=54.90 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=32.6
Q ss_pred HHHHHHh----cCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021959 64 TIDRLTS----ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 64 ~l~~~l~----~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.|...+. ++-++. ++|+||||+|||+++..++......+....++.++...
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 4555565 443334 78999999999999888877764332123344555543
No 143
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=0.00034 Score=57.31 Aligned_cols=42 Identities=12% Similarity=0.293 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+.. ....+|+++.+.
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 5678999999 56788888888888887664 245566666553
No 144
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.50 E-value=0.00019 Score=59.04 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+.
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 5678999999 567888888888888877543 44566666553
No 145
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.48 E-value=0.00024 Score=72.20 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
+++|||||||||+++.+++.+....+-+..|+.+
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~ 1118 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 1118 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEc
Confidence 8999999999999999999877544333334443
No 146
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.00055 Score=58.92 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=31.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... ...+|++|.+..
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 6678999999 677888888888888776532 456677776543
No 147
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.48 E-value=0.0075 Score=54.75 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=47.2
Q ss_pred ceEEEEEeCCCcCC----HHHHHHHHHHHHHhcC-CceEEEEecCCc--ccchhhhcce-eEEEecCCCHHHHHHHH
Q 021959 141 SVKLVLLDEADAMT----KDAQFALRRVIEKYTK-NTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERL 209 (305)
Q Consensus 141 ~~~vliiDe~~~l~----~~~~~~l~~~l~~~~~-~~~iil~~~~~~--~l~~~l~~r~-~~i~~~~~~~~~~~~~l 209 (305)
++.+|+|||++.+. ++....|.++.....+ ...+|+++.++. .+...+++.+ ..+.|...+..+...++
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 45799999999774 3445556666666544 445666666654 5677777776 66788877887777666
No 148
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.47 E-value=0.00054 Score=55.37 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=32.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 5678999999 567888888888888877642 456777776654
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.0014 Score=56.18 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC----CcccEEEeecCC
Q 021959 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASD 114 (305)
Q Consensus 64 ~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~~ 114 (305)
.|...+.++-.+. ++|+||||+|||+++..++.....+. ....++.++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3444454433333 78999999999999999998753211 233455555544
No 150
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00066 Score=54.81 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
..+++.||+|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4589999999999987665543
No 151
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.45 E-value=0.00051 Score=59.04 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=32.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.+|++|| .-.+++.....+++++.+... ...+++++.+..
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6688999999 566888888899998887642 456677776543
No 152
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.45 E-value=0.0011 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
..++|+|+||+||||+++.++..+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998643
No 153
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.44 E-value=0.00059 Score=58.53 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... ...+|++|.+..
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 5678999999 577888888888888776532 455666766543
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=0.00071 Score=55.60 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..+.|+||+|+||||+++.++..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 3489999999999999999998774
No 155
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.44 E-value=0.00014 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999987
No 156
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.44 E-value=0.0008 Score=53.95 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 6678999999 566888888888888876642 45566666553
No 157
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.42 E-value=0.00065 Score=58.66 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=31.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... ...+|++|.+..
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6678999999 677888888888888876532 456677776543
No 158
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.42 E-value=0.0013 Score=55.32 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=25.9
Q ss_pred ceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
+..+|||||+|.+.. .....+..++...+.+..+++.+...
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 456899999998764 22334445555555666676666443
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.42 E-value=0.00049 Score=70.88 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
..++++||||||||+++.+++.+....+....|+.+.
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1118 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 3499999999999999999998876666655555544
No 160
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.41 E-value=0.0028 Score=50.34 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=26.5
Q ss_pred ceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
...++++||+|.+.. .....+..++...+.+..+++.|..
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 199 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 199 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEee
Confidence 457999999998843 3445566666666656666666543
No 161
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.40 E-value=0.00056 Score=55.47 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678999999 567888888888888876532 455667776543
No 162
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.40 E-value=0.00013 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.++|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999987
No 163
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.40 E-value=0.00086 Score=53.54 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecCC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
+..++++||+|.+.... ...+..++...+.+..+++.|...
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 35799999999875432 344556666665566666665443
No 164
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.38 E-value=0.00024 Score=60.79 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... +..+|++|.+..
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6678999999 577888888888888876532 456667776543
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.37 E-value=0.0037 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 166
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.36 E-value=0.0015 Score=53.43 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=31.4
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 5678999999 566888888889998887643 44566666554
No 167
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.35 E-value=0.0015 Score=53.44 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=32.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCcc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~~ 183 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+...
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 5678999999 577888888888888886543 4556667765543
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.35 E-value=0.00094 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
...++|+||+|+||||+++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999999999876
No 169
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.34 E-value=0.0002 Score=54.65 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.34 E-value=0.0014 Score=52.04 Aligned_cols=104 Identities=14% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCC---Ccc---------cEEEeecCCCcChhHHHHHHHHhhhcccccCCCCC
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQ---YHN---------MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
....+++.|++|+|||+++..+........ +.. .+.-++.+.. ...+..+..+..... ...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---~~~~~~~~~~~~~~~----~~~ 83 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH---VKLRYKLSDYLKTRA----KFV 83 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCC---GGGTHHHHHHHHHHG----GGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCc---HHHHHHHHHHHHhcc----ccC
Confidence 345699999999999999999987642211 110 1111222222 222222222221100 011
Q ss_pred ceEEEEEeCC-CcC-CHHHHHHHHHHHHH----hcCCceEEEEecCCcc
Q 021959 141 SVKLVLLDEA-DAM-TKDAQFALRRVIEK----YTKNTRFALICNQVNK 183 (305)
Q Consensus 141 ~~~vliiDe~-~~l-~~~~~~~l~~~l~~----~~~~~~iil~~~~~~~ 183 (305)
...++++|-. +.- .......+..++.. .+.+.++++++|..+.
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 2467888866 222 23344555555553 2346778888887664
No 171
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.34 E-value=0.00021 Score=61.49 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=31.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... +..+|++|.+..
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 5678999999 677888888888888776532 456667776543
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.34 E-value=0.0028 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.|+||+|+||||+++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 173
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.32 E-value=0.00066 Score=55.06 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+.. ....+|+++.+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 6678999999 56788888888888887654 345566677654
No 174
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.0002 Score=56.33 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..++|.|++|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999987
No 175
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.31 E-value=0.0025 Score=55.63 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCC----CcccEEEeecCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASD 114 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~~ 114 (305)
.+.|+||+|+||||++..++-....+. .....+.++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 389999999999999998765442211 223355555544
No 176
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.31 E-value=0.0021 Score=53.77 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++|.||+|+||||+++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999988753
No 177
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.29 E-value=0.00032 Score=54.53 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=23.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
..++|+|++|+||||+++.+++.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3589999999999999999999885433
No 178
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=55.85 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
.++|.|++|+||||+++.+++.+...++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 30 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 4789999999999999999999854443
No 179
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.29 E-value=0.00072 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 359999999999999887776654
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.29 E-value=0.0016 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.++|+|+||+|||+++..++....
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHhHHHHHHHHHHh
Confidence 389999999999999999998753
No 181
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.29 E-value=0.0024 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 37899999999999999999986
No 182
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.28 E-value=0.0016 Score=51.12 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCcCCHH-HHHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+... ....+..++...+.+..+++.|..
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 4579999999987542 334455555655556666665543
No 183
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.28 E-value=0.0006 Score=62.97 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
|.+.+..+...+..+. ..+++++|+|+|||..+-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 3444444444444433 45899999999999998888777644
No 184
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.00071 Score=55.13 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=32.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+......+|+++.+..
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 5578999999 566788888888888887654556777776644
No 185
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.27 E-value=0.00076 Score=58.30 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... ...+|++|.+..
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 5678999999 577888888888888776532 456667776543
No 186
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00021 Score=55.50 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
..++|.|++|+||||+++.++..+...+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 34899999999999999999998854443
No 187
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.26 E-value=0.00015 Score=60.95 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=31.9
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++||. -.++......+.+.+.+......+|+++.+..
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 45779999994 56778888888888887655666677776544
No 188
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.25 E-value=0.00025 Score=54.73 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 189
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.24 E-value=0.0012 Score=56.57 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHh--cCCceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKY--TKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~--~~~~~iil~~~~~~ 182 (305)
.++.++++|| .-.++......+...+.+. .....+|++|.+..
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5678999999 6778887777777655432 22456667776543
No 190
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.22 E-value=0.00028 Score=57.53 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=28.5
Q ss_pred EEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCC
Q 021959 144 LVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (305)
Q Consensus 144 vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~ 181 (305)
++++|| ...++......+.+++.+.. ....+|+++.+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999 56788888889999888764 344566666553
No 191
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.21 E-value=0.00092 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.++|.||+|+|||+++..+++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 347899999999999999999886
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.21 E-value=0.0061 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHh
Q 021959 77 LLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
++|.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998774
No 193
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.0025 Score=54.28 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 61 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.++.+.-.+..+. .+.+.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 4445555554443 489999999999999999998763
No 194
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.19 E-value=0.00036 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 195
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00037 Score=54.83 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 72 NRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..+..+.|.||+|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444588999999999999999999885
No 196
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.18 E-value=0.0023 Score=52.75 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=31.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.. ....+|+++.+..
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 6678999999 56688888888999888764 3455666666544
No 197
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.18 E-value=0.0026 Score=55.17 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=24.1
Q ss_pred ceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021959 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 141 ~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
+..+||+||+|.+.. .....+..+....+.+..+++.+
T Consensus 145 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 145 KIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp TCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 457999999998764 22334444555555566666665
No 198
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.17 E-value=0.00033 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.+++|+|++|+||||+++.+++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999987
No 199
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.16 E-value=0.00032 Score=55.15 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+..++|.||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34558999999999999999999887
No 200
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.16 E-value=0.0004 Score=59.20 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 64 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+...+..+..+.++|.|++|+||||+++.++..+
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 33333445556669999999999999999999987
No 201
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.15 E-value=0.00049 Score=54.47 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 61 IVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 61 ~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.++.|...+... .+..+.|.||+|+||||+++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555554432 223478999999999999999999885
No 202
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00038 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+||||+++.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999987
No 203
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.15 E-value=0.0026 Score=50.57 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+.... ...+..++...+.+..+++.|..
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 45789999999876432 34455566666656666665533
No 204
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.14 E-value=0.00034 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.++|+|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 205
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.14 E-value=0.002 Score=51.95 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=26.5
Q ss_pred ceEEEEEeCCCcCCHH-HHHHHHHHHHHhcCCceEEEEecCC
Q 021959 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
...+||+||+|.+... ....+..++...+.+..+++.+...
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 3579999999987532 2344556666666666766666443
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00029 Score=53.86 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 207
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.12 E-value=0.011 Score=53.17 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=43.3
Q ss_pred eEEEEEeCCCcCCHHH----HHHHHHHHHHhcC-CceEEEEecCCc--ccchhhhcce-eEEEecCCCHHHHHHHHH
Q 021959 142 VKLVLLDEADAMTKDA----QFALRRVIEKYTK-NTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERLK 210 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~----~~~l~~~l~~~~~-~~~iil~~~~~~--~l~~~l~~r~-~~i~~~~~~~~~~~~~l~ 210 (305)
+.+++|||++.+.... ...+..+...... ...+|+++.++. .+...+++.+ ..+.|.-.+..+...++.
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 4699999997665322 2333444444333 556677776655 4666666665 667787778877776664
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.10 E-value=0.00077 Score=53.01 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 60 DIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 60 ~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
..++.+...+... .+..+.|.|++|+||||+++.++..+...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~ 50 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG 50 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3455555555542 222378999999999999999998874333
No 209
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.10 E-value=0.00054 Score=52.19 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=29.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.+.+.|.|++|+||||++..++..+...++...++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 4558899999999999999999998666655555443
No 210
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.09 E-value=0.00082 Score=56.06 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+||||+||||+++.++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999875
No 211
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.09 E-value=0.027 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998764
No 212
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00048 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 213
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.07 E-value=0.00062 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..++|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3458999999999999999999987
No 214
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.06 E-value=0.0055 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999977766544
No 215
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.06 E-value=0.005 Score=53.72 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=24.8
Q ss_pred CceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEec
Q 021959 140 ASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
.+..+|++||+|.+.. .....+..+....+.+..+++.+.
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 208 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 208 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEES
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEe
Confidence 3467999999997742 233344455555555666666653
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.05 E-value=0.00046 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+||||+++.++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999875
No 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00041 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+|++|+||||+++.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 218
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.05 E-value=0.0013 Score=61.45 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
++.-.+++...+... +..+|.||||||||+++-.+...+...+
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~ 233 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQG 233 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 566667777777644 3579999999999988777766665443
No 219
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00035 Score=53.68 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.++|.|+||+||||+++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 220
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.03 E-value=0.00042 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+||+|+||||+++.++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999999876
No 221
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.0007 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 222
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00052 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 223
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.02 E-value=0.0038 Score=52.72 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 62 VDTIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 62 ~~~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
+..|...+ ++-.+ .++|.|+||+|||+++..++......+
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 34555555 33222 389999999999999999987765544
No 224
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.02 E-value=0.0074 Score=49.98 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++...+.+..++.+ ...++.+|+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 34444555555554 236889999999999987776654
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00054 Score=53.09 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+..++|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999997
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.00 E-value=0.00086 Score=57.57 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=30.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+...+.+... ...+|++|.+..
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6678999999 566777777777777765432 455667776543
No 227
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.00 E-value=0.0044 Score=53.10 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEec
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~ 179 (305)
+..++++||+|.+.... ...+..++...+....+++.|.
T Consensus 147 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 186 (367)
T 1hv8_A 147 NVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 186 (367)
T ss_dssp SCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECS
T ss_pred cCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEee
Confidence 45799999999875322 3445555665555666666653
No 228
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.00 E-value=0.0035 Score=49.14 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=25.9
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecCC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
+..++++||+|.+.... ...+..++...+.+..+++.|...
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 35799999999875432 344555556555566666665443
No 229
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.99 E-value=0.0018 Score=56.92 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=34.8
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+++++--.......+...+. .....++|+||+|+||||++++++..+...
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45555444444555666543 333348999999999999999999988543
No 230
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00094 Score=52.43 Aligned_cols=23 Identities=48% Similarity=0.898 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 231
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.97 E-value=0.003 Score=51.39 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCcCCHH-HHHHHHHHHHHhcCCceEEEEecCC
Q 021959 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
...+||+||+|.+... -...+..++...+.+..+++.+...
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 3578999999987543 2334555566555556666555433
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.96 E-value=0.014 Score=52.42 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.+.++|++|+||||++..++..+...+....++..+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 388999999999999999998886555555555543
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.00068 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..++|+||+|+||||+++.++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3448999999999999999999875
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.95 E-value=0.00063 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+||+|+||||+++.++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 448999999999999999999875
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.00055 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.94 E-value=0.0011 Score=58.50 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.++++|++|+||||++..++..+...+....++..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 489999999999999999999886555444444433
No 237
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.93 E-value=0.00078 Score=53.36 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCc
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (305)
..++|+|++|+||||+++.+++.+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 358999999999999999999987544433
No 238
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.93 E-value=0.0042 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.93 E-value=0.00073 Score=53.43 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCc
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (305)
..++|+|++|+||||+++.+++.+...+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 348999999999999999999987544443
No 240
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.93 E-value=0.0072 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 241
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.0068 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.92 E-value=0.00067 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999876
No 243
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.92 E-value=0.0032 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00048 Score=53.57 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..++|.||+|+||||+++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999875
No 245
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.92 E-value=0.0012 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+..++|+|++|+||||+++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33458999999999999999999887
No 246
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00064 Score=53.69 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
.++|.|++|+||||+++.+++.+...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999999999998543
No 247
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.026 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+++.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999875
No 248
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.90 E-value=0.0068 Score=48.52 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=24.7
Q ss_pred ceEEEEEeCCCcCCHH--HHHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKD--AQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~--~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+... ....+..++...+....+++.+..
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 3468999999987432 234455556666656656555533
No 249
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.90 E-value=0.0032 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998777654
No 250
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.89 E-value=0.00064 Score=54.32 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 251
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.89 E-value=0.0076 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
++|.|.+|+|||+++..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 899999999999999998753
No 252
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00076 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 253
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.89 E-value=0.00078 Score=53.01 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 021959 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++...+.+.........-.+++.|++|+|||+++..+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34445555555554444445999999999999999998864
No 254
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.88 E-value=0.0027 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 255
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.0012 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.87 E-value=0.0013 Score=50.41 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.+.+.|.|++|+||||+++.+...+...+.....+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 34589999999999999999999876555444444443
No 257
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.85 E-value=0.021 Score=44.30 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999977664
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.85 E-value=0.00076 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999999876
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.85 E-value=0.00072 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 260
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.85 E-value=0.00073 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+|++|+||||+++.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.85 E-value=0.0035 Score=63.87 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
.++|+|+||+|||+++..++......+.
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~~~~G~ 63 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAAQREGK 63 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 4899999999999999999877644443
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.85 E-value=0.0018 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
+.|.|++|+||||+++.++..+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999998853
No 263
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.84 E-value=0.00075 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 264
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.84 E-value=0.00079 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 265
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.84 E-value=0.015 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+.+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.83 E-value=0.0065 Score=50.80 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.+.++|++|+||||++..++..+...+....++.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3778899999999999999998865544443333
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.83 E-value=0.00047 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=17.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999886
No 268
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00082 Score=62.11 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=33.2
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~ 183 (305)
.++.++++||. ..++......+.+.+.+...+..+|+++.+...
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 45789999995 567788888888888876656667777776654
No 269
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.0009 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
++|.|++|+||||+++.+++.+...+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 789999999999999999998754443
No 270
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.83 E-value=0.004 Score=56.31 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=25.7
Q ss_pred CceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEec
Q 021959 140 ASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++|||||+|.+.. .....+..+....+.+..+++.|.
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 3467999999998864 233445555555555666666653
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.82 E-value=0.00097 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348899999999999999999874
No 272
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.82 E-value=0.001 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.82 E-value=0.00066 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999886
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.00089 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.||||+||+|.++.+++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999987
No 275
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.01 Score=47.94 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=24.2
Q ss_pred ceEEEEEeCCCcCCHH----HHHHHHHHHHHh-cCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKD----AQFALRRVIEKY-TKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~----~~~~l~~~l~~~-~~~~~iil~~~~ 180 (305)
+..+|||||+|.+... ....+..++... +.+..+++.+..
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT 219 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 4578999999998653 344555555543 234555555533
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.82 E-value=0.0011 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||||+||+|.++.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 277
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.81 E-value=0.0014 Score=52.28 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC-CCCcc
Q 021959 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHN 105 (305)
Q Consensus 63 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~ 105 (305)
..+........+..++|.|++|+||||+++.+++.+.. .+...
T Consensus 10 ~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v 53 (223)
T 3ld9_A 10 GTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN 53 (223)
T ss_dssp ---------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG
T ss_pred ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee
Confidence 34444555555555899999999999999999999865 55443
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.81 E-value=0.00098 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..+.|.||+|+||||+++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999877
No 279
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.80 E-value=0.0046 Score=50.70 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..+|||||+|.+.... ...+..++...+....+++.+..
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT 241 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT 241 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSS
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEec
Confidence 45799999999876432 34455566666666666666543
No 280
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.80 E-value=0.0059 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 281
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.79 E-value=0.0064 Score=54.46 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=25.1
Q ss_pred CceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEecC
Q 021959 140 ASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.+..+|||||+|.+.. .....+..+....+.+..+++.+..
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 276 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCC
Confidence 3467999999997742 2333444455555556666666543
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.79 E-value=0.0086 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998653
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.0012 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|+||+||||+++.++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999986
No 284
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.78 E-value=0.0043 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999875
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.78 E-value=0.0014 Score=57.94 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+...++|+|++|+|||++++.++....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 344589999999999999999988764
No 286
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.78 E-value=0.0072 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.77 E-value=0.00094 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||+|+||||+++.++..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999876
No 288
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.77 E-value=0.15 Score=41.17 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|.|.+|+||||++..+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999998753
No 289
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.022 Score=52.47 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=31.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKN-TRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~ 181 (305)
.++.++++|| ...|+......+.+++.+.... ..+|+++.+.
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5578999999 5678888888899999876543 3455555543
No 290
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.76 E-value=0.0026 Score=58.57 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=32.3
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++||. ..++......+.+.+.+...+..+|+++.+..
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 56789999995 56778888888888887655556677776654
No 291
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.76 E-value=0.0011 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+|++|+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 292
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.76 E-value=0.00065 Score=62.54 Aligned_cols=44 Identities=14% Similarity=0.375 Sum_probs=32.8
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~ 183 (305)
.++.++++||. ..++......+.+.+.+...+..+++++.+...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 45789999994 567777888888888876656667777766543
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.75 E-value=0.0011 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 348999999999999999998875
No 294
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.75 E-value=0.0012 Score=58.13 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=50.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhh-cc---c------c-cCCCC---Cce
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS-TQ---S------F-SFGVK---ASV 142 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~---~------~-~~~~~---~~~ 142 (305)
.++.|+||+|||+++..+++. .....+.+ .......+++.+..... .. . + ..... ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTp-T~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-------EEDLILVP-GRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-------TTCEEEES-CHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc-------CCeEEEeC-CHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 689999999999999887642 11222222 21223333333321100 00 0 0 01111 126
Q ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 143 ~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.+|+|||+..++......++.++ + ...++++++.
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~---~-~~~vilvGD~ 269 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMS---L-CDIAYVYGDT 269 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHT---T-CSEEEEEECT
T ss_pred CEEEEeCcccCCHHHHHHHHHhC---C-CCEEEEecCc
Confidence 89999999999876666555433 2 3678888754
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.73 E-value=0.00088 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|.||+|+||||+++.++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3789999999999999999874
No 296
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.73 E-value=0.0029 Score=53.11 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=24.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
..+.|.||+|+||||+++.++..+...+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 34789999999999999999998865443
No 297
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.73 E-value=0.0019 Score=51.17 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 72 NRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..+..++|.|++|+||||+++.++..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344588999999999999999999874
No 298
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.0012 Score=52.55 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 56 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
-.+.+..+.++........+.+++.|++|+||||++..++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34566667777777666667799999999999999999998863
No 299
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.72 E-value=0.003 Score=50.39 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
++...+.++..+.....+.+++.|.+|+||||++..++.....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4455566677666666666899999999999999999988643
No 300
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.0012 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.|++|+||||+++.++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 301
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.71 E-value=0.0011 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++|+|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998743
No 302
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.70 E-value=0.0015 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++|+|++|+||||+++.++..+..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999998743
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.00099 Score=52.29 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999876
No 304
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.69 E-value=0.014 Score=46.45 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=26.8
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+.... ...+..++...+.+..+++.+..
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 45799999999876432 34555666666666676666544
No 305
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.69 E-value=0.02 Score=49.72 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCcCCHHHHH-HHHHHHHHhcCCceEEEEe
Q 021959 141 SVKLVLLDEADAMTKDAQF-ALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~-~l~~~l~~~~~~~~iil~~ 178 (305)
+..+||+||+|.+...... .+..++...+....+++.+
T Consensus 163 ~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 163 DCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp TCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 3579999999987654433 3333444444455555544
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.68 E-value=0.01 Score=47.68 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+.... ...+..++...+....+++.|..
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 35699999999875432 34556666666656666665543
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.68 E-value=0.0014 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 308
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.68 E-value=0.0066 Score=53.03 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=25.7
Q ss_pred eEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEec
Q 021959 142 VKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~ 179 (305)
..+||+||+|.+.... ...+..++...+.+..+++.+.
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 5799999999875432 3455566666666677776653
No 309
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.68 E-value=0.0062 Score=56.10 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.0
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++||. -.++......+.+.+.+...+..+++++.+..
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 56789999995 56788888888888887766666777776654
No 310
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.67 E-value=0.0064 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||+++..+....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 311
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.0012 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 312
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.65 E-value=0.0097 Score=45.97 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998643
No 313
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.65 E-value=0.004 Score=53.57 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
....+.|+|++|+||||++..++..+...+....++..+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 3345899999999999999999998866666555555543
No 314
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.64 E-value=0.022 Score=51.38 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++.-.+.+..++.+ ...+++||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 33344444444443 458999999999999987766654
No 315
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.001 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.++|.||+|+|||+++..+++.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 358999999999999999999986
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.63 E-value=0.0073 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998643
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.63 E-value=0.0049 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHh
Q 021959 77 LLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+.|.||+|+||||+++.++....
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998653
No 318
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.62 E-value=0.0074 Score=55.84 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccC--CCCCceEEEEEeCCCc
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF--GVKASVKLVLLDEADA 152 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~vliiDe~~~ 152 (305)
...+|+|+.|.|||+++-.++..+.. . +.++.+.......+.+............. .......+++|||+-.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~-----~-~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAa 266 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAG-----R-AIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAA 266 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSS-----C-EEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGG
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh-----C-cEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhc
Confidence 35899999999999999999988732 1 25556666666665554332211111000 1122368999999999
Q ss_pred CCHHHHHHHH
Q 021959 153 MTKDAQFALR 162 (305)
Q Consensus 153 l~~~~~~~l~ 162 (305)
++......|+
T Consensus 267 Ip~pll~~ll 276 (671)
T 2zpa_A 267 IPAPLLHQLV 276 (671)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9965544444
No 319
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.61 E-value=0.012 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998764
No 320
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.61 E-value=0.01 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999764
No 321
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.61 E-value=0.0096 Score=48.04 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=26.5
Q ss_pred CceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 140 ASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.+..+++|||+|.+.... ...+..++...+.+..+++.+..
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 345799999999876432 34455556666566666666543
No 322
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.61 E-value=0.01 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3899999999999999999754
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.60 E-value=0.0017 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+||||+++.++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999999876
No 324
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.59 E-value=0.0024 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 325
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.58 E-value=0.015 Score=50.29 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=25.7
Q ss_pred CceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021959 140 ASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
.+..+|++||+|.+.. .....+..++...+....+++.|
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 3457899999998864 34445556666555566666655
No 326
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.58 E-value=0.002 Score=59.30 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=32.2
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++||. -.++......+.+.+.+...+..+|+++.+..
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 55779999995 56778888888888887655556777776654
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0024 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|.|++|+||||+++.++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 459999999999999999999987
No 328
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.57 E-value=0.01 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 899999999999999999864
No 329
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.011 Score=45.51 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q 021959 72 NRLPHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.....+++.|++|+|||++++.+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3344599999999999999999984
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.56 E-value=0.029 Score=50.55 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=25.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCC-CCcccEE
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGA-QYHNMIL 108 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~ 108 (305)
++|.|+||+|||+++..++...... +....++
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 7999999999999999999887544 4433333
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.56 E-value=0.00093 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+.|.||.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999876
No 332
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.56 E-value=0.011 Score=51.48 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEe
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~ 178 (305)
...+||+||+|.+.... ...+..++...+....+++.+
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 35799999999875432 345555565555566666655
No 333
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.55 E-value=0.0088 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998764
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.54 E-value=0.019 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.54 E-value=0.0017 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999999875
No 336
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.54 E-value=0.00057 Score=54.17 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
.++|.|++|+||||+++.+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999988543
No 337
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.53 E-value=0.012 Score=44.12 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 338
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.53 E-value=0.0072 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998643
No 339
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.53 E-value=0.0076 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999754
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.52 E-value=0.0063 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999987643
No 341
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.52 E-value=0.0041 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.+.|.||+|+||||+++.++..+...+....+..
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3789999999999999999998865544444433
No 342
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.52 E-value=0.014 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999887776654
No 343
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.51 E-value=0.006 Score=55.06 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
....+..+.-.+..+. .++++||+|+||||++++++..+
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 3455566655565553 49999999999999999998876
No 344
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0068 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999988653
No 345
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.019 Score=56.27 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCCCCCCCcchhhhcCCCCcccc--ccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHH
Q 021959 33 GTPPDIKASPWVEKYRPQSLADV--AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 33 ~~~~~~~~~~~~~~~~p~~~~~~--~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
..|+.....+|.+...|.....+ --.+.-.+.+.... .+ .++++.+|+|+|||..+.....
T Consensus 61 ~~p~~~~~~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g--~~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 61 ALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp ECCTTCCCCCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HT--CEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcccCCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cC--CCEEEECCCCCChHHHHHHHHH
Confidence 34444455667666555432111 11222333333333 33 3599999999999998654443
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.50 E-value=0.0035 Score=48.21 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999875
No 347
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.50 E-value=0.013 Score=50.78 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++++||+|.+.... ...+..++...+....+++.|..
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 46799999999875432 34455566665556666666543
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.49 E-value=0.0019 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.++..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999876
No 349
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.48 E-value=0.034 Score=55.34 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=28.0
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHH
Q 021959 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 95 (305)
.|...+..+...+.++.+..++++||+|+|||..+...+
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 355555666655556666679999999999998765444
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.48 E-value=0.0014 Score=50.06 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=16.4
Q ss_pred eEEEECCCCCcHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILA 93 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~ 93 (305)
.+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 351
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.47 E-value=0.0094 Score=50.68 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021959 63 DTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 63 ~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
..|...+.+.... .++|.|+||+|||+++..++..+...+....++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3445555332222 389999999999999999988775444433333
No 352
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.056 Score=39.53 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=62.1
Q ss_pred HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcc-cEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEE
Q 021959 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN-MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145 (305)
Q Consensus 67 ~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vl 145 (305)
..+.++..+.++|+|+.--=....+..+.+.+...+... .++.++. .....+.+... ...++.+. +.+|
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~-----~~~~~~l~~~~-~s~slF~~----rrlV 80 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLC-QAMSLFAS----RQTL 80 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST-----TCCHHHHHHHH-HCCCTTCC----CEEE
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC-----CCCHHHHHHHH-hcCCCCCC----CEEE
Confidence 334444556799999996556666666666554333221 1222222 12233344333 33333332 7999
Q ss_pred EEeCCCc-CCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021959 146 LLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 146 iiDe~~~-l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+|.+.+. ...+..+.|..+++.+++.+.+|++...
T Consensus 81 ~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~k 116 (140)
T 1jql_B 81 LLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (140)
T ss_dssp EEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSS
T ss_pred EEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 9998755 5566778899999988888888888643
No 353
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.46 E-value=0.015 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=17.7
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTI-LAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~-~~l~~~ 97 (305)
..+++.||+|+|||..+ ..+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45899999999999875 445533
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.46 E-value=0.032 Score=41.48 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 355
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.45 E-value=0.0086 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999999764
No 356
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.45 E-value=0.035 Score=49.24 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHh
Q 021959 63 DTIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 63 ~~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..|...+ ++-.+ .++|.|+||+|||+++..++....
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3455555 33323 279999999999999999988764
No 357
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.45 E-value=0.0045 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999764
No 358
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.45 E-value=0.0018 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 359
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.44 E-value=0.022 Score=51.78 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...|+......+.+++.+... ...+|+++.+..
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678999999 577888888888888876533 455666665543
No 360
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.44 E-value=0.005 Score=48.83 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
..++|.|++|+||||.++.+++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 34889999999999999999999876655
No 361
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.44 E-value=0.0032 Score=49.99 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcc
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (305)
.++|.|++|+||||.++.+++.+...+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 478999999999999999999997665543
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.44 E-value=0.02 Score=50.56 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=30.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC-CCcccEEEeecC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNAS 113 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~ 113 (305)
.++++|++|+||||++..++..+... +....++..+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 37888999999999999999998766 666666655543
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.43 E-value=0.0022 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+||||++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47899999999999999999987
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0088 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||+++..+...-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999999999999999997643
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.015 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999763
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.43 E-value=0.021 Score=42.74 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.3
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVA 95 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~ 95 (305)
.+++.|++|+|||++++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999986
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.43 E-value=0.012 Score=44.76 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.42 E-value=0.0083 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHh
Q 021959 77 LLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999988874
No 369
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.41 E-value=0.0041 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998753
No 370
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.41 E-value=0.02 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+++.|++|+|||+++..+...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998653
No 371
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.41 E-value=0.0047 Score=49.76 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCc
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (305)
.++|.|++|+||||.++.+++.+...+..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999998765554
No 372
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.002 Score=49.10 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+++.|++|+|||++++.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999864
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.012 Score=53.52 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=30.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc--CCceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT--KNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~--~~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+.. ....+++++.+.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5678999999 56788888888888887653 244566666554
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0015 Score=50.00 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
+.+.|.|++|+||||+++.++..+...++..-.+.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 347899999999999999999998654443444554443
No 375
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.40 E-value=0.0053 Score=46.04 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998854
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.40 E-value=0.0024 Score=52.09 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999886
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.39 E-value=0.0045 Score=47.39 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998764
No 378
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.39 E-value=0.0021 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.||.|+||||+++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348899999999999999999987
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.39 E-value=0.0031 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++|.|++|+||||+++.+++.+..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3889999999999999999999854
No 380
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.0043 Score=52.11 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
+.++|++|+||||++..++..+...+....++..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 7899999999999999999988655444444443
No 381
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.38 E-value=0.0018 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.37 E-value=0.0043 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 383
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.011 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999764
No 384
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.36 E-value=0.022 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 385
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.36 E-value=0.012 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998643
No 386
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.34 E-value=0.0036 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999987
No 387
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.0029 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999986
No 388
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.32 E-value=0.0037 Score=56.18 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 57 AHRDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 57 g~~~~~~~l~~~l--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
..+++.+.+++.. .......++|.|.+|+||||+++++++.+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4567777777766 2333345899999999999999999999953
No 389
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.31 E-value=0.0094 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999865
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.31 E-value=0.0022 Score=50.51 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+.|.|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 391
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.31 E-value=0.0074 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999753
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.018 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|.|++|+||||+++.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999999864
No 393
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.28 E-value=0.0076 Score=51.68 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.+.+.|.|+||+||||+++.+...+...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 34489999999999999999998764433
No 394
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.025 Score=51.34 Aligned_cols=42 Identities=10% Similarity=0.276 Sum_probs=32.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.++.++++|| ...|+......+.+++.+......+|+++.+.
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl 197 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh
Confidence 5578999999 56788888889999998876555666666554
No 395
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.28 E-value=0.008 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999754
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.015 Score=54.87 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=17.4
Q ss_pred CeEEEECCCCCcHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVA 95 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~ 95 (305)
.+++++||+|+|||+.+...+
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 469999999999999984443
No 397
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.005 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999875
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.26 E-value=0.01 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999865
No 399
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0026 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+.|+|++|+||||+++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34889999999999999999885
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.24 E-value=0.0082 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.+.|.||+|+||||+++.++..+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998874
No 401
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.23 E-value=0.012 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
.++|.|++|+||||+++.++......
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999877543
No 402
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.016 Score=43.76 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998753
No 403
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.22 E-value=0.0026 Score=64.09 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..+.|+||+|+||||+++.+....
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc
Confidence 3458999999999999999998876
No 404
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0029 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|+|++|+||||+++.+++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 405
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.21 E-value=0.011 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999764
No 406
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.0052 Score=51.38 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=28.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC-CCCcccEEEeec
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNA 112 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~ 112 (305)
..+.+.|++|+||||++..++..+.. .+....++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 34889999999999999999998863 555555554443
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.20 E-value=0.0085 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999854
No 408
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.20 E-value=0.024 Score=53.35 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCcCC----HHHHHHHHHHHHHhcCCceEEEEec
Q 021959 141 SVKLVLLDEADAMT----KDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 141 ~~~vliiDe~~~l~----~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
+.++|||||+|.+. ......++..+....++.++++.+.
T Consensus 138 ~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSA 180 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180 (702)
T ss_dssp GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred hcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECC
Confidence 45799999999974 3344555555555455667766653
No 409
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.19 E-value=0.026 Score=43.34 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+++.|++|+|||++++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998765
No 410
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.18 E-value=0.011 Score=54.46 Aligned_cols=43 Identities=19% Similarity=0.474 Sum_probs=32.0
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++||. ..++......+.+.+.+...+..+|+++.+..
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 55779999995 56778888888888887655556667776643
No 411
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.021 Score=56.54 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCcCCHHHH-HHHHHHHHHhcCCceEEEEe
Q 021959 141 SVKLVLLDEADAMTKDAQ-FALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~-~~l~~~l~~~~~~~~iil~~ 178 (305)
+..+|||||+|++..... ..+..++...+.+..+++.|
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lS 328 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 328 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEc
Confidence 357999999999975433 23444455556667766665
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.17 E-value=0.0021 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=15.3
Q ss_pred CeEEEECCCCCcHHHHHHHHH-HHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVA-RKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~-~~~ 98 (305)
..+.|.||+|+||||+++.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 348899999999999999999 764
No 413
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.17 E-value=0.0078 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=4.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998765
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0043 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+.|.||+|+||||+++.++..+...
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999987543
No 415
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.15 E-value=0.052 Score=47.61 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=27.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.+.+.|++|+||||++..++..+...+....++..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 37788999999999999999998766554444443
No 416
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.15 E-value=0.004 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+|||+++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 47899999999999999999988
No 417
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.15 E-value=0.0048 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
...+.|+||+|+||||+++.++..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3448999999999999999999987
No 418
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.14 E-value=0.0026 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|+|++|+||||+++.++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37899999999999999998764
No 419
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.13 E-value=0.011 Score=54.80 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
++.....+...+. .+..++.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555555555553 245899999999999999888877654
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.13 E-value=0.0031 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|.|+||+||||+++.+++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999985
No 421
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.13 E-value=0.019 Score=43.72 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 422
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.11 E-value=0.014 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.4
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTI-LAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~-~~l~~~~ 98 (305)
.+++++||+|+|||+.+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 56999999999999887 3444443
No 423
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.10 E-value=0.0082 Score=60.55 Aligned_cols=44 Identities=20% Similarity=0.429 Sum_probs=32.4
Q ss_pred CceEEEEEeCCC-cCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021959 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~ 183 (305)
.++.++++||+- .++.+....+.+.+++..++..+|+++.+...
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 457799999974 45666777788888877667777777766543
No 424
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.10 E-value=0.038 Score=46.56 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEe
Q 021959 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~ 178 (305)
+..+|++||+|.+.... ...+..++...+....+++.+
T Consensus 129 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (337)
T 2z0m_A 129 SFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFS 167 (337)
T ss_dssp GCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEE
T ss_pred hCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEe
Confidence 35799999999886433 334445555555555555544
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.10 E-value=0.014 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.09 E-value=0.0081 Score=45.90 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=8.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||+++..+...
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998754
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.014 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999864
No 428
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.09 E-value=0.035 Score=49.17 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHhCCCCc
Q 021959 62 VDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (305)
Q Consensus 62 ~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (305)
...|...+.+-... .++|.|+||+|||+++..++......+..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~ 227 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDV 227 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCE
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCE
Confidence 34455555322222 38999999999999999998877544433
No 429
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.08 E-value=0.014 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998743
No 430
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.06 E-value=0.0023 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+|+|||+++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998875
No 431
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.06 E-value=0.028 Score=51.99 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCcCCHHHHHHHHHHHHHhc-CCceEEEEe
Q 021959 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALIC 178 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~iil~~ 178 (305)
.+..+|||||+|.+.......+..+++..+ .+..+++.+
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEE
Confidence 346799999999997554434444443332 355565555
No 432
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.06 E-value=0.032 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++++|.+|+||||+++.+++.+..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4899999999999999999998743
No 433
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.04 E-value=0.0075 Score=54.91 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=33.4
Q ss_pred chHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021959 58 HRDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 58 ~~~~~~~l~~~l--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
++++.+.++... .......++|+|++|+||||+++.+++.+...+
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G 400 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARG 400 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence 456666777766 233334488999999999999999999875443
No 434
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.04 E-value=0.034 Score=53.74 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.++|+||.|+||||+++.++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999843
No 435
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.04 E-value=0.0072 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHH-HHHHH
Q 021959 77 LLLYGPPGTGKTSTILA-VARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~-l~~~~ 98 (305)
+++.|++|+|||++++. +....
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999 44443
No 436
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.04 E-value=0.11 Score=39.84 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 437
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.03 E-value=0.014 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999998753
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.03 E-value=0.01 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.02 E-value=0.0021 Score=53.63 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=19.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..+.|+|++|+||||+++.+++.+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999999773
No 440
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.02 E-value=0.0044 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||.|+||||+++.++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.028 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 442
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.01 E-value=0.017 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 38999999999999999998753
No 443
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.01 E-value=0.0058 Score=47.80 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcc
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (305)
++|.|+.|+||||.++.+++.+...+...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v 31 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 67899999999999999999997766543
No 444
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.01 E-value=0.026 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|+||.|+||||+++.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4899999999999999998643
No 445
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.01 E-value=0.0051 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.+.|.||+|+||||+++.++..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 3789999999999999999998754
No 446
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.00 E-value=0.088 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.7
Q ss_pred CeEEEECCCCCcHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTIL 92 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~ 92 (305)
..+++.+|+|+|||....
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999997533
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.026 Score=52.05 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=30.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc--CCceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT--KNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~--~~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+.. ....+++++.+.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5688999999 56678888888888887653 245566666554
No 448
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.98 E-value=0.052 Score=42.82 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021959 74 LPHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
...+++.|++|+|||+++..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999998765
No 449
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0043 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+.|+|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 450
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.98 E-value=0.015 Score=49.19 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHH
Q 021959 64 TIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 64 ~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.|...+.++-.+ .++|+|+||+|||+++..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444433222 37999999999999999998764
No 451
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.98 E-value=0.0098 Score=46.92 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||++++.+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 452
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.011 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.|++|+|||++++.+...-
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 453
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.96 E-value=0.0055 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
-.+++.|++|+|||++++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999998764
No 454
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.94 E-value=0.019 Score=51.20 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++.-.+.+..++.. ..+++.||+|+|||..+..++...
T Consensus 95 ~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34444455545443 248999999999999988777765
No 455
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.94 E-value=0.019 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
..+++.|++|+|||++++.+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999998753
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0094 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|.|++|+||||+++.++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348899999999999999999987
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.93 E-value=0.011 Score=46.23 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999764
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0067 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|++|+|||+++..+...
T Consensus 12 i~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 459
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.93 E-value=0.005 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..++|+||+|+||||+++.++..+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3489999999999999999999874
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.92 E-value=0.0053 Score=55.86 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=30.5
Q ss_pred hHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 59 RDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 59 ~~~~~~l~~~l--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
++....++... .......++|.|++|+||||+++.++..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 45555555544 2223345899999999999999999999853
No 461
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.92 E-value=0.0046 Score=49.93 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHH---HhcCCceEEEEecCCcc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIE---KYTKNTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~---~~~~~~~iil~~~~~~~ 183 (305)
.++.++++|| ...++......+.+.+. .......+|+++.+...
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 4577999999 56688888888888883 33334567777766543
No 462
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0063 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+.|.||+|+||||+++.++..+...
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCChHHHHHHHHHhhcccc
Confidence 7899999999999999999988543
No 463
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.89 E-value=0.0097 Score=51.28 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc
Q 021959 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (305)
++.+.-.+.-+++..+.|.||+|+|||++++.+++.+.+.+..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~ 204 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 204 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence 3344444555666679999999999999999999887554333
No 464
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.89 E-value=0.0074 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998754
No 465
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.87 E-value=0.012 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||++++.+...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 466
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.86 E-value=0.0084 Score=50.70 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
+.++|++|+||||++..++..+...+....++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999998865554444443
No 467
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.86 E-value=0.0049 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
..++|.|++|+||||.++.+++.+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 348999999999999999999998544
No 468
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.85 E-value=0.0065 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999997753
No 469
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.83 E-value=0.095 Score=47.80 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.6
Q ss_pred CCeEEEECCCCCcHHHH
Q 021959 74 LPHLLLYGPPGTGKTST 90 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l 90 (305)
...+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 34699999999999975
No 470
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.82 E-value=0.0059 Score=52.61 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 63 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+.+.-.+..+ ..++|+||+|+||||+++.++..+.
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3333334444 3599999999999999999998763
No 471
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.80 E-value=0.0055 Score=50.27 Aligned_cols=42 Identities=12% Similarity=0.338 Sum_probs=28.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5567899998 456777778888887776532 34556666553
No 472
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.79 E-value=0.0052 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 473
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.0075 Score=53.80 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
.+.|.|++|+||||+++.++..+...
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc
Confidence 37899999999999999999987543
No 474
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.77 E-value=0.0092 Score=47.27 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|+|++|+||||+++.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999986
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.76 E-value=0.0069 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..++|+||+|+||||++..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3489999999999999999998664
No 476
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.75 E-value=0.02 Score=54.61 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
++.....+...+. .+..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4444555555553 245899999999999999888887754
No 477
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.74 E-value=0.04 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=18.0
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Q 021959 75 PHLLLYGPPGTGKTSTI-LAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~-~~l~~~~ 98 (305)
..+++.||+|+|||..+ ..+...+
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~ 33 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAEC 33 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45999999999999874 4444443
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.73 E-value=0.0074 Score=49.65 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 4567999999 566888889999999987643 345666665543
No 479
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.73 E-value=0.007 Score=49.27 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| .-.++......+.+++.+... ...+|+++.+..
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 4567999999 566788888899999987743 445666666544
No 480
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.72 E-value=0.0074 Score=60.70 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=29.6
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.++.++++||. -.++.+....+.+.++....+..+|+++.+.
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 585 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 45779999995 5567777777777777665555666676543
No 481
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.71 E-value=0.0061 Score=48.93 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=29.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHH-HHHhcCCceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRV-IEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~-l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+. +........+|+++.+..
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 5678999999 566788888888886 444433455666766543
No 482
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.71 E-value=0.013 Score=47.85 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=28.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021959 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
+++.|.+|+||||++..++..+. .+....++..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 78999999999999999999887 666655665544
No 483
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.70 E-value=0.011 Score=50.31 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=26.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021959 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
....+.|.|++|+||||+++.++..+...+....+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 3344889999999999999999987754333333333
No 484
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.70 E-value=0.067 Score=48.02 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc---c
Q 021959 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS---F 134 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~ 134 (305)
|.+.+..+......+ .+.+|.-+.|+|||..+-.++..+...+....++-+.+.. -.......+..+..... +
T Consensus 42 Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~ 117 (500)
T 1z63_A 42 QIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSKFAPHLRFAVF 117 (500)
T ss_dssp HHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHHHCTTSCEEEC
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH--HHHHHHHHHHHHCCCceEEEE
Confidence 344444444333333 3488999999999998888877765433223344444322 23344444444321110 0
Q ss_pred cCC-------------------------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021959 135 SFG-------------------------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 135 ~~~-------------------------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.+. ......+||+||+|.+.... ....+.+...+...+++++++..
T Consensus 118 ~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~ 188 (500)
T 1z63_A 118 HEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPI 188 (500)
T ss_dssp SSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCS
T ss_pred ecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCC
Confidence 000 01235799999999996432 23445555555455666666543
No 485
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.69 E-value=0.053 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|+||.|+||||+++.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 47899999999999999998764
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.69 E-value=0.0068 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+.+.|++|+||||+++.+...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 487
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.68 E-value=0.0087 Score=54.82 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021959 61 IVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 61 ~~~~l~~~l--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+.+.++... .+..+..++|+|++|+||||+++.+++.+.
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 444444444 222233488999999999999999999984
No 488
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.66 E-value=0.0059 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.|.||+|+||||+++.++...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.66 E-value=0.006 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+++.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 490
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.011 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.+++.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 491
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.65 E-value=0.0063 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.|.|++|+||||+++.+....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998754
No 492
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.63 E-value=0.0069 Score=49.61 Aligned_cols=44 Identities=18% Similarity=0.505 Sum_probs=32.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~ 183 (305)
.++.++++|| ...++......+.+++.+......+|+++.+...
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 5577999999 5667888888899988877555566777766543
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.63 E-value=0.0069 Score=49.94 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=32.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021959 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| .-.++......+.+++.+... ...+|+++.+..
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 5678999999 566888888999999987643 455666776543
No 494
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.61 E-value=0.0073 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021959 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.|.||+|+||||+++.++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999876
No 495
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.60 E-value=0.0068 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+|+||.|+||||++.++.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 496
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.60 E-value=0.036 Score=52.64 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHH
Q 021959 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.|.+.+..+..-+.++...++++.||+|+|||..+...+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4667777777766666666799999999999987655443
No 497
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.60 E-value=0.0067 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (305)
.+.|+|++|+||||+++.++.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999994
No 498
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.019 Score=48.02 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=27.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021959 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
.+.+.|++|+||||++..++..+...+....++..+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 377899999999999999999886555544444443
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.58 E-value=0.0071 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021959 76 HLLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (305)
.++|.|++|+||||++..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4999999999999999999874
No 500
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.58 E-value=0.054 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.2
Q ss_pred CeEEEECCCCCcHHHH-HHHHHHHH
Q 021959 75 PHLLLYGPPGTGKTST-ILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l-~~~l~~~~ 98 (305)
..+++.||+|+|||+. +..+...+
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4599999999999986 45555444
Done!