Query 021961
Match_columns 305
No_of_seqs 130 out of 1099
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 100.0 2.8E-77 9.5E-82 551.7 23.7 210 75-297 4-216 (247)
2 1lfp_A Hypothetical protein AQ 100.0 3.4E-77 1.2E-81 551.4 19.0 206 75-293 1-208 (249)
3 1kon_A Protein YEBC, YEBC; alp 100.0 2.8E-77 9.7E-82 552.0 18.3 210 73-296 2-214 (249)
4 1mw7_A Hypothetical protein HP 100.0 1.4E-76 4.8E-81 545.1 18.5 208 76-297 1-215 (240)
5 1u8s_A Glycine cleavage system 34.0 75 0.0026 26.4 6.0 109 169-281 7-124 (192)
6 2f06_A Conserved hypothetical 33.2 1.7E+02 0.006 22.8 9.4 94 171-280 9-102 (144)
7 3mhy_A PII-like protein PZ; PI 30.8 37 0.0013 26.8 3.3 24 254-277 3-26 (112)
8 3ncq_A Nitrogen regulatory pro 30.7 45 0.0015 26.8 3.8 24 254-277 3-26 (119)
9 1hwu_A PII protein; herbaspiri 30.5 47 0.0016 25.7 3.8 24 254-277 3-26 (112)
10 3t9z_A GLNK3, nitrogen regulat 29.6 48 0.0016 26.6 3.8 24 254-277 3-26 (118)
11 3bzq_A Nitrogen regulatory pro 29.5 50 0.0017 25.7 3.8 24 254-277 5-28 (114)
12 4aff_A Nitrogen regulatory pro 29.2 50 0.0017 26.3 3.8 24 254-277 3-26 (116)
13 2eg2_A Nitrogen regulatory pro 29.1 52 0.0018 25.6 3.8 24 254-277 3-26 (112)
14 2ns1_B Nitrogen regulatory pro 29.1 51 0.0018 25.9 3.8 24 254-277 7-30 (116)
15 1b0n_B Protein (SINI protein); 28.5 83 0.0028 22.5 4.5 33 115-147 8-40 (57)
16 3lk7_A UDP-N-acetylmuramoylala 28.4 63 0.0021 30.8 5.0 59 122-186 283-342 (451)
17 2gw8_A PII signal transduction 27.6 57 0.0019 25.5 3.8 24 254-277 5-28 (114)
18 1gg4_A UDP-N-acetylmuramoylala 27.2 76 0.0026 30.2 5.4 61 122-188 286-347 (452)
19 2j9c_A GLNK1, hypothetical nit 26.7 60 0.002 25.6 3.8 24 254-277 5-28 (119)
20 1vfj_A Nitrogen regulatory pro 25.8 64 0.0022 25.2 3.8 24 254-277 3-26 (116)
21 1e8c_A UDP-N-acetylmuramoylala 25.6 1.1E+02 0.0039 29.4 6.4 60 122-188 311-371 (498)
22 3c7m_A Thiol:disulfide interch 25.0 1.6E+02 0.0053 23.6 6.3 47 98-144 93-140 (195)
23 2x5o_A UDP-N-acetylmuramoylala 24.9 71 0.0024 30.3 4.7 60 122-187 272-332 (439)
24 1sfu_A 34L protein; protein/Z- 24.8 46 0.0016 25.2 2.7 28 123-150 30-57 (75)
25 3hn7_A UDP-N-acetylmuramate-L- 24.1 1.3E+02 0.0043 29.4 6.4 60 122-188 347-407 (524)
26 3dfe_A Putative PII-like signa 24.0 49 0.0017 26.3 2.9 25 253-277 7-31 (111)
27 2nzc_A Hypothetical protein; s 23.9 77 0.0026 24.5 3.8 59 170-233 9-71 (86)
28 3lh2_S 4E10_1VI7A_S0_002_N (T8 23.6 62 0.0021 23.2 3.2 27 254-280 9-35 (76)
29 1owx_A Lupus LA protein, SS-B, 23.3 58 0.002 26.3 3.2 47 164-216 16-64 (121)
30 3l7p_A Putative nitrogen regul 23.0 51 0.0017 26.2 2.8 23 254-276 5-27 (115)
31 2gjf_A Designed protein; proca 22.4 81 0.0028 22.6 3.6 27 253-279 47-73 (78)
32 1vjq_A Designed protein; struc 21.1 1.2E+02 0.004 21.7 4.2 27 253-279 39-65 (79)
33 2o66_A PII protein; regulation 20.3 90 0.0031 25.5 3.8 25 253-277 14-38 (135)
34 1j6u_A UDP-N-acetylmuramate-al 20.2 2.1E+02 0.0071 27.4 7.0 59 122-187 282-343 (469)
35 1p3d_A UDP-N-acetylmuramate--a 20.2 1.6E+02 0.0054 28.1 6.1 58 122-186 296-358 (475)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=100.00 E-value=2.8e-77 Score=551.69 Aligned_cols=210 Identities=30% Similarity=0.538 Sum_probs=192.4
Q ss_pred cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961 75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE 152 (305)
Q Consensus 75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~ 152 (305)
++|| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus 4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~ 83 (247)
T 4f3q_A 4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGD 83 (247)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----C
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcC
Confidence 5666 99999999999999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 232 (305)
Q Consensus 153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG 232 (305)
+|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.+. .|+|++||.|||+|
T Consensus 84 ~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaG 162 (247)
T 4f3q_A 84 NLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVG 162 (247)
T ss_dssp CCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHT
T ss_pred CceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999864 79999999999999
Q ss_pred CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961 233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ 297 (305)
Q Consensus 233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~ 297 (305)
||||++. | ++.|+|+|+|++|.+|+++|++.||++.++ +++|+|+++|+ ++++
T Consensus 163 AeDv~~~---e--------dg~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e~ 216 (247)
T 4f3q_A 163 AEDVTTN---D--------DGSIDVTTLPEDFEKIRNAMKAADLNPSHA-EVTVLASTEVGLDKDS 216 (247)
T ss_dssp CSEEEEC---T--------TSCEEEEECGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCEECCHHH
T ss_pred Cceeeec---C--------CceEEEEECHHHHHHHHHHHHHcCCCeeEE-EEEEecCCccccCHHH
Confidence 9999852 1 146999999999999999999999999886 99999999999 5443
No 2
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=100.00 E-value=3.4e-77 Score=551.45 Aligned_cols=206 Identities=31% Similarity=0.555 Sum_probs=193.4
Q ss_pred cCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-Ccc
Q 021961 75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE 152 (305)
Q Consensus 75 ~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~~~ 152 (305)
+||| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~ 80 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGE 80 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCccc
Confidence 5786 99999999999999999999999999999999999999999999999999999999999999999999987 556
Q ss_pred ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCC
Q 021961 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 232 (305)
Q Consensus 153 ~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaG 232 (305)
+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.++..++|++||+|||+|
T Consensus 81 ~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~aleaG 160 (249)
T 1lfp_A 81 QFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVG 160 (249)
T ss_dssp CCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHT
T ss_pred ceEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999865579999999999999
Q ss_pred CccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc
Q 021961 233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293 (305)
Q Consensus 233 AEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve 293 (305)
||||++ + ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+
T Consensus 161 AeDv~~----e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~ 208 (249)
T 1lfp_A 161 AEDVQP----G--------EEVHIIYTVPEELYEVKENLEKLGVPIEKA-QITWKPISTVQ 208 (249)
T ss_dssp CSEEEC----C--------SSEEEEEECGGGHHHHHHHHHTTTCCCSEE-EEEEEESSCEE
T ss_pred Cceeec----C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEECCCCcee
Confidence 999973 1 246999999999999999999999999886 99999999998
No 3
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=100.00 E-value=2.8e-77 Score=552.03 Aligned_cols=210 Identities=30% Similarity=0.551 Sum_probs=186.1
Q ss_pred CccCCc-hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-C
Q 021961 73 PVCMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-G 150 (305)
Q Consensus 73 ~~~mG~-KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~-~ 150 (305)
.++||| ||+||||+|+++|++|+|+|+||+|+|++|+|+|||||+.||+||.+|++||+.|||||+||||||||+|. +
T Consensus 2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~ 81 (249)
T 1kon_A 2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDD 81 (249)
T ss_dssp ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC-----
T ss_pred CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCc
Confidence 357886 99999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred ccceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHH
Q 021961 151 QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 230 (305)
Q Consensus 151 ~~~~~e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIE 230 (305)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||.|||+|+|+|.+.+ + ++|++||+|||
T Consensus 82 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~-~-~ed~~le~ale 159 (249)
T 1kon_A 82 DANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK-G-DEDTIMEAALE 159 (249)
T ss_dssp -CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESS-S-CHHHHHHHHHH
T ss_pred ccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECC-C-CHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999999999999999999999999985 3 89999999999
Q ss_pred CCCccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chh
Q 021961 231 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIH 296 (305)
Q Consensus 231 aGAEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~ 296 (305)
+|||||+.. + ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+ +++
T Consensus 160 aGAeDv~~~---e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e 214 (249)
T 1kon_A 160 AGAEDVVTY---D--------DGAIDVYTAWEEMGKVRDALEAAGLKADSA-EVSMIPSTKADMDAE 214 (249)
T ss_dssp HTCSEEEEC---T--------TSCEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCCCCCTT
T ss_pred CCCceeeec---C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEECCCCceecCHH
Confidence 999999741 1 246999999999999999999999999886 99999999999 443
No 4
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=100.00 E-value=1.4e-76 Score=545.05 Aligned_cols=208 Identities=26% Similarity=0.359 Sum_probs=177.3
Q ss_pred CCchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCcccee
Q 021961 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI 155 (305)
Q Consensus 76 mG~KwsnIkh~K~a~DakKsklfsKl~keI~vAvk~GG~DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~ 155 (305)
||+||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. +.+|+
T Consensus 1 aGsKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~-~~~~e 79 (240)
T 1mw7_A 1 MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLS 79 (240)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST-TCCCE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998 77899
Q ss_pred EEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcC-cccCCCccceecceeeEEEEeeC----C-CCCHHHHHHHHH
Q 021961 156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG-GKMADPGSVMFKFRRARVVNIKF----T-DADKDQLLDIAL 229 (305)
Q Consensus 156 e~~YE~~GPgGvaiIVE~lTDN~nRt~s~ir~i~~K~g-G~l~~~gsv~f~F~~kGvi~v~~----~-~~d~D~l~e~AI 229 (305)
+++|||||||||+|||||||||+|||+++||++|+|+| |+||++|||.|||+|+|+|.+.+ . +.++|++||+||
T Consensus 80 ei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~al 159 (240)
T 1mw7_A 80 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALI 159 (240)
T ss_dssp EEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHG
T ss_pred EEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999985 2 369999999999
Q ss_pred HCCCccccCCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHHCCCCeeecccceeecCCCcc-chhh
Q 021961 230 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE-DIHQ 297 (305)
Q Consensus 230 EaGAEDVee~~~~Ed~~~ed~~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~s~ele~iP~~~Ve-~~~~ 297 (305)
|+|||||++ + ++.|+|+|+|++|.+|+++|+++||++.++ +++|+|+++|+ ++++
T Consensus 160 eaGAeDv~~----e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~a-ei~~~P~~~v~l~~e~ 215 (240)
T 1mw7_A 160 DYGLEELEE----V--------EDKIIIRGDYNSFKLLNEGFESLKLPILKA-SLQRIATTPIELNDEQ 215 (240)
T ss_dssp GGTEEEEEE----E--------TTEEEEEEEGGGHHHHHHHHHHTTCCCSEE-EEEEEESSCBCCCHHH
T ss_pred HCCCceeec----C--------CceEEEEECHHHHHHHHHHHHHcCCCeeee-eeEeCCCCCcccCHHH
Confidence 999999973 1 246999999999999999999999999886 99999999999 5443
No 5
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=34.02 E-value=75 Score=26.44 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=58.0
Q ss_pred EEEEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeE--EEEeeCCCCCHHHH----HHHHHHCCCccc-cCCCC
Q 021961 169 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL----LDIALDAGAEDV-IEPPV 241 (305)
Q Consensus 169 iIVE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kG--vi~v~~~~~d~D~l----~e~AIEaGAEDV-ee~~~ 241 (305)
++|-+...++...++.|-.+|..+|+++-+.. .+.-.... .+.+..+..+.+++ ...+-+.|.+-. ...+
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~--~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~- 83 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSR--IAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS- 83 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEE--EEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeee--eeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC-
Confidence 45667778899999999999999999986522 11111111 12232221122222 222223343321 1100
Q ss_pred CCCCCcccccCceEEEEeC--cccHHHHHHHHHHCCCCeeec
Q 021961 242 NEDDTDEDRAERYYKVVST--SDNYTDITTKLREAGIPFETD 281 (305)
Q Consensus 242 ~Ed~~~ed~~~~~~~i~~~--p~d~~~V~~~L~~~G~~i~~s 281 (305)
....+.......+++.|+ |.-+..|.+.|.+.|++|...
T Consensus 84 -~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~ 124 (192)
T 1u8s_A 84 -PHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASL 124 (192)
T ss_dssp -CCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred -CCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHh
Confidence 000000001124566776 667899999999999998654
No 6
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=33.20 E-value=1.7e+02 Score=22.85 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=60.0
Q ss_pred EEEecCChhhHHHHHHHHHhhcCcccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCCccccCCCCCCCCCcccc
Q 021961 171 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDR 250 (305)
Q Consensus 171 VE~lTDN~nRt~s~ir~i~~K~gG~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGAEDVee~~~~Ed~~~ed~ 250 (305)
+.+.-+|+....++|-.+|.++|-++-. -++ ......|++.+.. .|.|.+.+..-+.|.+.....
T Consensus 9 i~v~v~d~~G~l~~i~~~la~~~inI~~-i~~-~~~~~~~~~~~~~--~d~~~a~~~L~~~G~~v~~~s----------- 73 (144)
T 2f06_A 9 LSIFLENKSGRLTEVTEVLAKENINLSA-LCI-AENADFGILRGIV--SDPDKAYKALKDNHFAVNITD----------- 73 (144)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCCEEE-EEE-EECSSCEEEEEEE--SCHHHHHHHHHHTTCCEEEEE-----------
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCCEEE-EEE-EecCCCCEEEEEe--CCHHHHHHHHHHcCCeEeeee-----------
Confidence 3445578888899999999999987631 111 1222335554442 366776666556777543210
Q ss_pred cCceEEEEeCcccHHHHHHHHHHCCCCeee
Q 021961 251 AERYYKVVSTSDNYTDITTKLREAGIPFET 280 (305)
Q Consensus 251 ~~~~~~i~~~p~d~~~V~~~L~~~G~~i~~ 280 (305)
--...+--.|.-++++.+.|.+.|+++..
T Consensus 74 -vv~v~~~d~pGvla~i~~~L~~~~InI~~ 102 (144)
T 2f06_A 74 -VVGISCPNVPGALAKVLGFLSAEGVFIEY 102 (144)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHTTCCEEE
T ss_pred -EEEEEeCCCCcHHHHHHHHHHHCCCCEEE
Confidence 01124456688999999999999999843
No 7
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=30.84 E-value=37 Score=26.75 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.9
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aIIr~~kl~~vk~AL~~~G~~ 26 (112)
T 3mhy_A 3 LVMAIIKPFKLDEVREALTSLGIQ 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999886
No 8
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=30.66 E-value=45 Score=26.78 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++.+..|+.+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (119)
T 3ncq_A 3 KIEAIVRAEKFPEVKAALEERGFY 26 (119)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999886
No 9
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=30.50 E-value=47 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 1hwu_A 3 QVTAIIKPFKLDEVRESLAEVGVT 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999875
No 10
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=29.64 E-value=48 Score=26.57 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++.+..|+.+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (118)
T 3t9z_A 3 MVVAVIRPEKLECVKKALEERGFV 26 (118)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCc
Confidence 468899999999999999999886
No 11
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=29.54 E-value=50 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 5 ~I~aIIr~~~~~~v~~aL~~~G~~ 28 (114)
T 3bzq_A 5 LITAIVKPFTLDDVKTSLEDAGVL 28 (114)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999875
No 12
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=29.21 E-value=50 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.8
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++.+..|+.+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~vk~AL~~~G~~ 26 (116)
T 4aff_A 3 KIEAIIRPFKLDEVKIALVNAGIV 26 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999886
No 13
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=29.12 E-value=52 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEIGIG 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999875
No 14
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=29.08 E-value=51 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.0
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 7 ~I~aIIr~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 7 LVTVIIKPFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 478899999999999999999885
No 15
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=28.53 E-value=83 Score=22.47 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHhhc
Q 021961 115 NPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 147 (305)
Q Consensus 115 DP~~N~~La~aI~~AK~~nmPKd~IErAIkra~ 147 (305)
.++.....-..|.+||+.||+.+-|..-+..-.
T Consensus 8 ~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 8 HFELDQEWVELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 456778888999999999999999999997543
No 16
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=28.37 E-value=63 Score=30.80 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVR 186 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~G-PgGvaiIVE~lTDN~nRt~s~ir 186 (305)
...|+.-|...++|.+.|.++|+.-.+-. -++|..+ .+|+.+|.|+.-.|+.-+..-++
T Consensus 283 alaAia~a~~lgi~~~~i~~~L~~f~~~~------gR~e~v~~~~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 283 ALATIAVAKLAGISNQVIRETLSNFGGVK------HRLQSLGKVHGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHCCCCT------TSSEEEEEETTEEEEECTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCC------CcEEEEeeeCCcEEEEeCCCCCHHHHHHHHH
Confidence 34667788899999999999999865432 1344443 57888888887777776666554
No 17
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=27.65 E-value=57 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (114)
T 2gw8_A 5 KIEAIVKPFKLDDVREALTEIGIT 28 (114)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999875
No 18
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=27.16 E-value=76 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~G-PgGvaiIVE~lTDN~nRt~s~ir~i 188 (305)
+..|+.-|...++|.+.|.++|+...+-.. ++|... ++|+.+|+++.-.|+.-+..-++.+
T Consensus 286 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~~~~vidDsyahnp~s~~~~l~~l 347 (452)
T 1gg4_A 286 ALAAAALSMSVGATLDAIKAGLANLKAVPG------RLFPIQLAENQLLLDDSYNANVGSMTAAVQVL 347 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTCCCCTT------SSEEEEEETTEEEEECCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------CceEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 456777788899999999999987543221 233332 3578899998888888766666654
No 19
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=26.66 E-value=60 Score=25.63 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 5 KVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467889999999999999999885
No 20
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=25.82 E-value=64 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=21.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQAEVR 26 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHhCCCC
Confidence 468899999999999999999875
No 21
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=25.56 E-value=1.1e+02 Score=29.38 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~G-PgGvaiIVE~lTDN~nRt~s~ir~i 188 (305)
+..|+.-|...++|.+.|.++|+...+-.. ++|... .+|+.+|+| .-.|+.-...-++.+
T Consensus 311 alaAia~~~~lGi~~~~i~~~L~~~~~~~g------R~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l 371 (498)
T 1e8c_A 311 LLLALATLLALGYPLADLLKTAARLQPVCG------RMEVFTAPGKPTVVVD-YAHTPDALEKALQAA 371 (498)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCCTT------SSEEECCTTSCEEEEE-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHH
Confidence 456777888899999999999987653221 445554 358899999 788887666666554
No 22
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=25.04 E-value=1.6e+02 Score=23.56 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHH
Q 021961 98 YSRMGKEVISAVKKGGPNPTSNTVLAAVLEK-AKELDVPKDIVERNIK 144 (305)
Q Consensus 98 fsKl~keI~vAvk~GG~DP~~N~~La~aI~~-AK~~nmPKd~IErAIk 144 (305)
+..+...+..|.-..|.|......|..+++. |++.+++.+.+++++.
T Consensus 93 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~ 140 (195)
T 3c7m_A 93 FKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALK 140 (195)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHc
Confidence 4566777777777777777666778888777 8899999999888874
No 23
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=24.91 E-value=71 Score=30.26 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVRE 187 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~G-PgGvaiIVE~lTDN~nRt~s~ir~ 187 (305)
...|+.-|...++|.+.|.++|+.-.+-.. ++|..+ .+|+.+|.|+.-.|+.-+..-++.
T Consensus 272 alaA~a~~~~lgi~~~~i~~~L~~f~~~~g------R~e~~~~~~~~~vi~Ds~a~np~a~~~al~~ 332 (439)
T 2x5o_A 272 ALAALALADAAGLPRASSLKALTTFTGLPH------RFEVVLEHNGVRWINDSKATNVGSTEAALNG 332 (439)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCCTT------SSEEEEEETTEEEEECTTCCSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEEECCEEEEEeCCCCCHHHHHHHHHh
Confidence 455667788899999999999987654321 333333 367888888777777777665554
No 24
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.79 E-value=46 Score=25.15 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCC
Q 021961 123 AAVLEKAKELDVPKDIVERNIKRASEKG 150 (305)
Q Consensus 123 a~aI~~AK~~nmPKd~IErAIkra~g~~ 150 (305)
.++.+-||+.++||..|.|+|-+-..++
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3477889999999999999998766544
No 25
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=24.14 E-value=1.3e+02 Score=29.44 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~G-PgGvaiIVE~lTDN~nRt~s~ir~i 188 (305)
...|+.-|...++|.+.|.++|+...+-.. ++|..+ .+|+.+|+|.. .|+.-..+-++.+
T Consensus 347 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~g~~vi~D~a-hnp~~~~a~l~~l 407 (524)
T 3hn7_A 347 ALVAIAAAYNIGVSVKTACAALSAFAGIKR------RMELIGDVNDILVFDDFA-HHPTAITTTLDGA 407 (524)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCBTT------SSEEEEEETTEEEEEECC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCc------eEEEEEecCCcEEEEECC-CCHHHHHHHHHHH
Confidence 346777889999999999999987654321 344443 47899999995 6766555555444
No 26
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=24.00 E-value=49 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.0
Q ss_pred ceEEEEeCcccHHHHHHHHHHCCCC
Q 021961 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 253 ~~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
..++++..|..+..|+++|++.|+.
T Consensus 7 KkIeaIi~p~kl~~V~~aL~~~Gv~ 31 (111)
T 3dfe_A 7 NKLVIVTEKVLLKKVAKIIEEAGAT 31 (111)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHTCS
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 3589999999999999999998654
No 27
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=23.85 E-value=77 Score=24.49 Aligned_cols=59 Identities=8% Similarity=0.255 Sum_probs=39.7
Q ss_pred EEEEecCChhhHHHHHHHHHhhcCc----ccCCCccceecceeeEEEEeeCCCCCHHHHHHHHHHCCC
Q 021961 170 VVEVLTDKITRSVAAVREVVKDCGG----KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA 233 (305)
Q Consensus 170 IVE~lTDN~nRt~s~ir~i~~K~gG----~l~~~gsv~f~F~~kGvi~v~~~~~d~D~l~e~AIEaGA 233 (305)
||=++-||+..+...|+.+|.++|. +|| +.|-=...|+|.+.-+ .+.|++-.+.=+.|.
T Consensus 9 vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmG----iP~~~~~~~iIsl~v~-~~~d~I~aL~gkLg~ 71 (86)
T 2nzc_A 9 ILTIVVEDREKAYRQVNELLHNFSEDILLRVG----YPVREENMAIIFLVLK-TDNDTIGALSGKLGQ 71 (86)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTGGGEEEEEE----EEEGGGTEEEEEEEEE-ECHHHHHHHHHHHHT
T ss_pred EEEEEEeCchhhHHHHHHHHHhccCEEEEEcC----CCcCcCCceEEEEEEE-CCHHHHHHHHHHhCC
Confidence 4556668899888999999999995 555 3343356778776532 356666555555554
No 28
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=23.59 E-value=62 Score=23.24 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=24.5
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCCeee
Q 021961 254 YYKVVSTSDNYTDITTKLREAGIPFET 280 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~~i~~ 280 (305)
.|.+.|+..+++.|+..|++.|+.+..
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~ 35 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIIN 35 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEc
Confidence 489999999999999999999998754
No 29
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.35 E-value=58 Score=26.30 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=35.1
Q ss_pred cCCcEEEEEEecCC-hhhHHHHHHHHHhhcCcccCCCccceecc-eeeEEEEeeC
Q 021961 164 YGGVSIVVEVLTDK-ITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKF 216 (305)
Q Consensus 164 PgGvaiIVE~lTDN-~nRt~s~ir~i~~K~gG~l~~~gsv~f~F-~~kGvi~v~~ 216 (305)
|-|+.+.|.-+.++ . +..+|+.+|+++|- -..|-|.- +..|+|.+..
T Consensus 16 ~~G~il~v~~l~~~~~--sredLke~F~~~G~----V~~Vd~~~g~~tgfVrf~~ 64 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQT--CREDLHILFSNHGE----IKWIDFVRGAKEGIILFKE 64 (121)
T ss_dssp CCCCEEEEEESCCSSC--CHHHHHHHTCSSCC----EEEEECCTTCSEEEEEESS
T ss_pred cCCeEEEEecCCCCcC--CHHHHHHHHHhcCC----EEEEEEecCCCEEEEEECC
Confidence 78999999999988 5 48999999999763 22344444 3469999863
No 30
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=23.01 E-value=51 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCC
Q 021961 254 YYKVVSTSDNYTDITTKLREAGI 276 (305)
Q Consensus 254 ~~~i~~~p~d~~~V~~~L~~~G~ 276 (305)
.++.+..|+.+..|+++|.+.|+
T Consensus 5 kI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 5 KIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTC
T ss_pred EEEEEECHHHHHHHHHHHHHCCC
Confidence 47889999999999999999999
No 31
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=22.41 E-value=81 Score=22.61 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.1
Q ss_pred ceEEEEeCcccHHHHHHHHHHCCCCee
Q 021961 253 RYYKVVSTSDNYTDITTKLREAGIPFE 279 (305)
Q Consensus 253 ~~~~i~~~p~d~~~V~~~L~~~G~~i~ 279 (305)
..+.|..+|..+..+.+.|++.|++++
T Consensus 47 ~~vdI~V~p~~~~~f~~~L~~~~I~y~ 73 (78)
T 2gjf_A 47 QPVVILIPSDMVEWFLEMLKAKGIPFT 73 (78)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECHHHHHHHHHHHHHCCCcEE
Confidence 458899999999999999999998864
No 32
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=21.06 E-value=1.2e+02 Score=21.74 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred ceEEEEeCcccHHHHHHHHHHCCCCee
Q 021961 253 RYYKVVSTSDNYTDITTKLREAGIPFE 279 (305)
Q Consensus 253 ~~~~i~~~p~d~~~V~~~L~~~G~~i~ 279 (305)
....|..+|..+..+.+.|++.|++++
T Consensus 39 ~~~di~V~p~~~~~f~~~L~~~~i~~~ 65 (79)
T 1vjq_A 39 QPVVILIPSDMVEWFLEMLKAKGIPFT 65 (79)
T ss_dssp CCEEEEECGGGHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECHHHHHHHHHHHHHCCCcEE
Confidence 458899999999999999999998863
No 33
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=20.28 E-value=90 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.5
Q ss_pred ceEEEEeCcccHHHHHHHHHHCCCC
Q 021961 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (305)
Q Consensus 253 ~~~~i~~~p~d~~~V~~~L~~~G~~ 277 (305)
..++.++.|+.+..|+++|.+.|+.
T Consensus 14 K~I~AIIr~~k~~~V~~AL~~~G~~ 38 (135)
T 2o66_A 14 YKVEAIVRPWRIQQVSSALLKIGIR 38 (135)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCc
Confidence 3578899999999999999999875
No 34
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=20.20 E-value=2.1e+02 Score=27.39 Aligned_cols=59 Identities=7% Similarity=0.037 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEE--e-cCCcEEEEEEecCChhhHHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY--G-YGGVSIVVEVLTDKITRSVAAVRE 187 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~--G-PgGvaiIVE~lTDN~nRt~s~ir~ 187 (305)
...|+.-|...++|.+.|.++|+...+-. -++|.. + .+|+.+|+| .-.|+.-..+-++.
T Consensus 282 alaAia~a~~lgi~~~~i~~~L~~f~g~~------gR~e~v~~~~~~g~~vi~D-~aHnp~~~~a~l~a 343 (469)
T 1j6u_A 282 ALAVIALFDSLGYDLAPVLEALEEFRGVH------RRFSIAFHDPETNIYVIDD-YAHTPDEIRNLLQT 343 (469)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCCT------TSSEEEEEETTTTEEEEEE-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCC------CCcEEEcccccCCcEEEEe-CCCCHHHHHHHHHH
Confidence 45677778889999999999999865432 245555 4 368999999 55565544444433
No 35
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=20.17 E-value=1.6e+02 Score=28.13 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCccceeEEEEEEEec-----CCcEEEEEEecCChhhHHHHHH
Q 021961 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGY-----GGVSIVVEVLTDKITRSVAAVR 186 (305)
Q Consensus 122 La~aI~~AK~~nmPKd~IErAIkra~g~~~~~~~e~~YE~~GP-----gGvaiIVE~lTDN~nRt~s~ir 186 (305)
...|+.-|...++|.+.|.++|+...+-.. ++|..+. +|+.+|+| .-.|+.-..+-++
T Consensus 296 alaAia~~~~lgi~~~~i~~~L~~f~~~~g------R~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~ 358 (475)
T 1p3d_A 296 ATAALAVAKEEGIANEAILEALADFQGAGR------RFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIK 358 (475)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCBTT------SSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------CCEEEecccccCCCcEEEEe-CCCCHHHHHHHHH
Confidence 456777888999999999999987654321 2233322 47889999 6556554444433
Done!