RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021961
(305 letters)
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; 1.72A {Aquifex aeolicus}
SCOP: e.39.1.1
Length = 249
Score = 180 bits (459), Expect = 6e-56
Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ ++P + +E
Sbjct: 8 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E E F E +YE Y GGV+++V TD R+ + VR V GG +
Sbjct: 68 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ GAEDV E+ + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQ--------PGEE----VHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
+ ++ L + G+P E PI+T++
Sbjct: 176 VPEELYEVKENLEKLGVPIE-KAQITWKPISTVQ 208
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
bacterial structural genomics initiative, BSGI,
structural genomics; 2.20A {Escherichia coli} SCOP:
e.39.1.1
Length = 249
Score = 178 bits (455), Expect = 2e-55
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D +
Sbjct: 11 ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 70
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R +YE YG GG +I++E L+D R+VA VR CGG +
Sbjct: 71 RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 130
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V I F D+D +++ AL+AGAEDV+ +D V +
Sbjct: 131 GSVAYLFSKKGV--ISFEKGDEDTIMEAALEAGAEDVVT---YDDG--------AIDVYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIE 293
+ + L AG+ ++ +E+ +P T +
Sbjct: 178 AWEEMGKVRDALEAAGLKADS---AEVSMIPSTKAD 210
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
{Coxiella burnetii}
Length = 247
Score = 178 bits (455), Expect = 3e-55
Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 14/214 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I K QDAK+ K+++++ +E+ A + GG + SN L AV++KA ++PKD +
Sbjct: 11 ANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTIT 70
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + +E YE YG GV+++V+ LTD R+VA VR C G +
Sbjct: 71 RAIKRGAGSGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTE 130
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F++ ++ ++D++++++IAL+ GAEDV N+D V +
Sbjct: 131 GSVAYLFKQRGLITFP-PNSDEEKIMEIALEVGAEDVTT---NDDG--------SIDVTT 178
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
+++ I ++ A + +L T +
Sbjct: 179 LPEDFEKIRNAMKAADLNPS-HAEVTVLASTEVG 211
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 173 bits (440), Expect = 3e-53
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 26/227 (11%)
Query: 76 MGRRSSKIAGRKGAQDA---KKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
MGR R+ A++ K +K++ ++ K + A K GG P +N L + AK
Sbjct: 1 MGR---AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQ 57
Query: 133 DVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV-KD 191
++PKD ++ IKRAS K E YE GV I++E +TD TR++A ++ K
Sbjct: 58 NMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKT 116
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADK-----DQLLDIALDAGAEDVIEPPVNEDDT 246
G + GS+ F F R V + + + L +D G E++ E
Sbjct: 117 QGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEE-------- 168
Query: 247 DEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
ED + +++ + +P + + T IE
Sbjct: 169 VED----KIIIRGDYNSFKLLNEGFESLKLPIL-KASLQRIATTPIE 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 35/307 (11%), Positives = 84/307 (27%), Gaps = 101/307 (32%)
Query: 40 RNLFSSASSISSWIPLYEVKHC----NFQVRTIRTFAPVCMGRRSSKIAGR--KGAQDAK 93
+++ S E+ H + T+R F + + ++ + +
Sbjct: 43 KSILSKE----------EIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRIN 90
Query: 94 KAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA 153
L S + E P+ T + + ++ + + + + N+ R +
Sbjct: 91 YKFLMSPIKTEQRQ--------PSMMTRMY-IEQRDRLYNDNQVFAKYNVSR--LQPYLK 139
Query: 154 FIEKVYE--------VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ + E + G G K + A+ +V + + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSG--------K---TWVAL-DVCLSYKVQCKMDFKIFW- 186
Query: 206 FRRARVVNIKFTDADKDQL---------LDIALDAGAEDVIEPPVNEDDT-DEDR---AE 252
+N+K ++ + L +D + ++ + E R
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 253 RYYK------------------------VVSTSD-NYTDI----TTK---LREAGIPFET 280
+ Y+ +++T TD TT L +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 281 DNGSELL 287
D LL
Sbjct: 301 DEVKSLL 307
Score = 31.7 bits (71), Expect = 0.31
Identities = 44/364 (12%), Positives = 103/364 (28%), Gaps = 94/364 (25%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALS---------KHGLLSRNLFSSASSISS 51
+ + +S V +L ++ + W+ S S + L R L S +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENC 246
Query: 52 WIPLYEVKHCNFQVRTIRTFAPVC---MGRRSSKIAGRKGAQDAKKAK-------LYSRM 101
+ L V++ + F C + R ++ A L
Sbjct: 247 LLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 102 GKEVISA------------VKKGGPNPTSNTVLAAVLEKAKE-----LDVPKDIVERNIK 144
K ++ V NP +++A + V D + I+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 145 RA-----SEKGQEAF-----------I-EKVYEVYGYGGVSIVVEVLTDKITRSVAAVRE 187
+ + ++ F I + + + + V V+ +K+ + +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419
Query: 188 VVKDCGGKMADPG---SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 244
+ ++ P + K ++ D D ++D+I P +
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK---TFD--SDDLIPPYL--- 469
Query: 245 DTDE----------DRAERYYKVVSTSDNYTD---ITTKLREAGIPFETDNGSELLPITT 291
D+ E ++ + D + K+R + +L T
Sbjct: 470 --DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS--ILN--T 523
Query: 292 IEDI 295
++ +
Sbjct: 524 LQQL 527
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.080
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 34/140 (24%)
Query: 37 LLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTF--APVCMGRRSSKIAGRK--GAQDA 92
L ++ + A+ + VK I+ + A + R K + A
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVK----TKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 93 KKAKLYSRMGKEVISAVKKG-GPNPTSNTVLAAVLEKAKEL----DVPKDIVERNIKRAS 147
A+L + G G G ++ +EL +V IK ++
Sbjct: 152 GNAQLVAIFG---------GQG---NTDDYF-------EELRDLYQTYHVLVGDLIKFSA 192
Query: 148 EKGQE--AFIEKVYEVYGYG 165
E E +V+ G
Sbjct: 193 ETLSELIRTTLDAEKVFTQG 212
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 31.5 bits (72), Expect = 0.33
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
R +N+ D +L D GAE VI + + R E
Sbjct: 189 AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI------TEEELRRPEM 231
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.8 bits (70), Expect = 0.50
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
K +++ + D+++ + GA VI + + E +
Sbjct: 189 KLLNFNSISVIRDRPNLDEVVASLKELGATQVI------TEDQNNSREFGPTI 235
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family
transcriptional regulator streptomyces, structur
genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Length = 211
Score = 29.3 bits (66), Expect = 1.1
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 5/44 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKV 257
K LL A P+ E D + +
Sbjct: 67 RTKRDLLTAMAQAAMAPHAAEPLPEPGEDWHGWFLRNTRSFRRT 110
>2xpw_A Tetracycline repressor protein class D; transcription,
transcription regulator, helix-turn-helix, ME
coordination; HET: OTC MES; 1.44A {Escherichia coli}
PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A*
2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A*
2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A
...
Length = 207
Score = 28.9 bits (65), Expect = 1.7
Identities = 5/44 (11%), Positives = 11/44 (25%), Gaps = 5/44 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKV 257
+K LLD + + + A + +
Sbjct: 45 KNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNAMSFRRA 88
>3bqy_A Putative TETR family transcriptional regulator; structural
genomics, strept coelicolor, PSI-2, protein structure
initiative; 1.95A {Streptomyces coelicolor A3}
Length = 209
Score = 28.6 bits (64), Expect = 2.0
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKVV 258
A K LL + + V + D D A +
Sbjct: 44 AAKQDLLTAMAEHMVDGVADAAGATGDGDWSERTARLARALRAAL 88
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix,
structural genomics, PSI, protein structur initiative;
2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Length = 213
Score = 28.2 bits (63), Expect = 2.8
Identities = 4/43 (9%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVV 258
+ ++++ ++ DE A Y
Sbjct: 51 KGRAAVVELVRHRVVREIDGSAFERLPWDEAFSEWARSYRAAF 93
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 28.7 bits (63), Expect = 3.0
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 147 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM--- 203
SE+ + + + ++ + + + D M D +
Sbjct: 230 SERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMH---LDTWLTMLDKDKFLYSP 286
Query: 204 --------FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + + L + + + P+ + + ER
Sbjct: 287 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 346
Query: 256 ------------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV L AGI +G++L
Sbjct: 347 HFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQL 389
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293,
TET streptomyces coelicolor A3(2), PSI-2; 1.70A
{Streptomyces coelicolor}
Length = 241
Score = 28.2 bits (63), Expect = 3.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDD 245
+K +LL D ++ E D
Sbjct: 71 RNKTELLRAVADRILLSAMDGYRPEGD 97
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 27.9 bits (62), Expect = 4.1
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 174 LTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL---- 229
LT + ++ R ++ + K S + +F RAR +I + + ++
Sbjct: 35 LTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDIN--AS-VEMFVE-TERWRE 90
Query: 230 DAGAEDVIE---PPVNEDDTDEDRAERYYKVV 258
+ GA +IE +D + + + Y
Sbjct: 91 EYGANTIIEDYENNKEAEDKERIKLAKMYPQY 122
>2opt_A Actii protein; helical protein, TETR family, APO-protein,
transcriptional R transcription; 2.05A {Streptomyces
coelicolor} PDB: 3b6a_A* 3b6c_A*
Length = 234
Score = 27.5 bits (61), Expect = 4.7
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVV 258
++D+LLD+ D +V P E ++
Sbjct: 48 GNRDELLDLVFDIVLTEVEVPEPEPGRWAEQVKEMCRSLRRMF 90
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: a.4.1.9 a.121.1.1
Length = 220
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNED--DTDEDRAERYYKV 257
+K LL +A E EP + + E YY +
Sbjct: 48 KNKQALLQSMAEAIEEHFQEPALCGEWYSDLLAFMENYYDL 88
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 6.1
Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 127 EKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVR 186
E+ K L D + +++ + + +E+ + ++++ ++ R
Sbjct: 93 EQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQ------------SEQVEKNKINNR 139
Query: 187 E 187
Sbjct: 140 I 140
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure
initiativ midwest center for structural genomics, MCSG;
2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 243
Score = 27.1 bits (60), Expect = 6.1
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
A+ +L LDA +V ++ ++
Sbjct: 61 ANTAELHAAVLDALLGEVDLTGAGAEEDWREQLRAV 96
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.5 bits (60), Expect = 6.3
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 10/153 (6%)
Query: 130 KELDVPKDIVERNIKRASEKGQEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVR 186
K +VP DI I + S + F + YG V L D R
Sbjct: 516 KNTEVPVDI----IIQPSAASKHKMFPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSR 571
Query: 187 EVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDT 246
+ G K P + K + +G E ++
Sbjct: 572 KRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLD 631
Query: 247 DEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 279
+ K ++ ++ K + +
Sbjct: 632 YLKIDKTLSKRTIST---VNVQLKCSVVILNLQ 661
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 27.1 bits (60), Expect = 6.8
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 5/45 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKVV 258
K +LL A DA + A +
Sbjct: 58 TGKAELLGAATDAVVTAAVTAGPTGAADSPQDAVRAVALGLWDAT 102
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas
aeruginosa} SCOP: c.23.1.3
Length = 196
Score = 27.0 bits (59), Expect = 7.0
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 214 IKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
+ + + +L ++ VI P++
Sbjct: 83 VALVEYESPAVLSQIIELECHGVITQPLDAHR 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.8 bits (59), Expect = 7.2
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 131 ELDVPKD-IVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV 189
L ++ ++ R+ R ++ ++ E + G+ T + + ++V
Sbjct: 107 ILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQ--PTNLNDIV 164
Query: 190 KD 191
K+
Sbjct: 165 KN 166
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 27.2 bits (61), Expect = 7.2
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 91 DAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
DA KA++ M +E+ A+K + ++++ E+ VP ++++ I
Sbjct: 267 DALKAEVRKNMERELKQAIK----ARIKEQAIEGLVKEN-EIQVPSALIDQEINV 316
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 26.2 bits (58), Expect = 7.2
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 122 LAAVLEKAKELDVPKDIVERNIKR--ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKI 178
+ VL A + VE N A I+ ++ Y G + + +
Sbjct: 58 VKNVLSSANLVID----VESNYTAQAAQMIKLYTGIDIKNKILKYNGRHMTEDEILKSA 112
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Length = 206
Score = 26.8 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 99 SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
S M K++ + G N + VL V E+A +L + +V AS G+ A ++
Sbjct: 19 SHMEKKICYFEEPGKEN--TERVLELVGERADQLGIRNFVV------ASVSGETA--LRL 68
Query: 159 YEVYGYGGVSI 169
E+ VS+
Sbjct: 69 SEMVEGNIVSV 79
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3
receptor suppressor domain, calcium channe trefoil fold,
membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Length = 246
Score = 27.1 bits (59), Expect = 7.9
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 22 SSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSS 81
++ S N F +S GL+ + P + + C F++ + ++ +++
Sbjct: 33 YAEGSTNGF-ISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWKAA 91
Query: 82 KIAGRKGAQDAKKAKLYSRMGKE 104
K KL+ E
Sbjct: 92 KPGANSTTDAVLLNKLHHAADLE 114
>1xy7_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G48480, reductively methylated protein, CATH
3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP:
d.32.1.9 PDB: 2q48_A
Length = 166
Score = 26.6 bits (58), Expect = 8.2
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 212 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V D + + A+DAGA V E KV
Sbjct: 103 VTFLLGTKDAEAAVAKAVDAGAVKVEVT------EAEVELGFKGKVT 143
>2vpr_A Tetracycline resistance repressor protein; transcription,
metal-binding, antibiotic resistance, transcr regulator;
HET: TDC; 2.49A {Pasteurella multocida}
Length = 207
Score = 26.7 bits (59), Expect = 8.9
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKVV 258
+K LLD + + + + + A+ + + +
Sbjct: 46 KNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQAL 90
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription,
simocyclinone regulator, TETR-family; 1.95A
{Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Length = 267
Score = 26.8 bits (59), Expect = 9.1
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVV 258
K+ L+++ +D + P D A +
Sbjct: 69 PTKEDLVELMVDEVIGETRLPDRPGPDWRAALTLAANEKRALW 111
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 26.7 bits (60), Expect = 9.2
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 100 RMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
++G ++ AV + L+A L+ L + D
Sbjct: 11 KVGTTMVRAVAA-----ADDLTLSAELDAGDPLSLLTD 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,619,101
Number of extensions: 290779
Number of successful extensions: 1011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 62
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)