RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021961
(305 letters)
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 146 bits (370), Expect = 3e-43
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D +
Sbjct: 6 ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 65
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R +A +YE YG GG +I++E L+D R+VA VR CGG +
Sbjct: 66 RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 125
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + ++ I F D+D +++ AL+AGA V D V +
Sbjct: 126 GSV--AYLFSKKGVISFEKGDEDTIMEAALEAGA-----EDVVTYDDG------AIDVYT 172
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
+ + L AG+ ++ ++P T +
Sbjct: 173 AWEEMGKVRDALEAAGLKADSA-EVSMIPSTKAD 205
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
[TaxId: 63363]}
Length = 243
Score = 129 bits (324), Expect = 1e-36
Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 14/214 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ ++P + +E
Sbjct: 4 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 63
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + + E+V YE Y GGV+++V TD R+ + VR V GG +
Sbjct: 64 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 123
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ D E + + +
Sbjct: 124 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEV------------GAEDVQPGEEVHIIYT 171
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIE 293
+ ++ L + G+P E PI+T++
Sbjct: 172 VPEELYEVKENLEKLGVPIEKA-QITWKPISTVQ 204
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 100 bits (251), Expect = 4e-26
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 12/200 (6%)
Query: 96 KLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI 155
K++ ++ K + A K GG P +N L + AK ++PKD ++ IKRAS K
Sbjct: 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLS 59
Query: 156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNI 214
E YE GV I++E +TD TR++A ++ G + GS+ F F R V
Sbjct: 60 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119
Query: 215 KFTDADKDQLLDIALDAGAEDV-IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLRE 273
+ + +L L+ D +E +D R + + +
Sbjct: 120 LKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNS--------FKLLNEGFES 171
Query: 274 AGIPFETDNGSELLPITTIE 293
+P + + T IE
Sbjct: 172 LKLPILKA-SLQRIATTPIE 190
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 30.9 bits (69), Expect = 0.18
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 147 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM--- 203
SE+ + + + ++ + + + D M D +
Sbjct: 229 SERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMH---LDTWLTMLDKDKFLYSP 285
Query: 204 --------FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + + L + + + P+ + + ER
Sbjct: 286 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 345
Query: 256 ------------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV L AGI +G++L
Sbjct: 346 HFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQL 388
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 87
Score = 26.0 bits (57), Expect = 1.8
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
+V V E + + + V ++ D Q L L GA + PP
Sbjct: 24 TVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83
Query: 241 V 241
V
Sbjct: 84 V 84
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 27.8 bits (61), Expect = 2.1
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIV---VEVLTDKITRSVAAVREVVKD 191
P ++E + E + +E++ +VY GV + +E++ ++ + V V D
Sbjct: 1331 PHQLLE---AKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYV-----EVTD 1382
Query: 192 CGGKMADPGSVM--FKFRRAR 210
G G V+ +
Sbjct: 1383 PGDSRLLEGQVLEKWDVEALN 1403
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 255
Score = 27.1 bits (60), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 105 VISAVKKGGPNPTSNTVLAAVLEKAKELDVPK 136
V VK G T +V+A ++E+A E V K
Sbjct: 64 VFDLVKANGKEGTVGSVIADLVERALEDGVIK 95
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 248
Score = 27.1 bits (60), Expect = 2.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 105 VISAVKKGGPNPTSNTVLAAVLEKAKELDVPK 136
+ VK+ G + T TV+ +V+ +A E +
Sbjct: 64 LYDIVKENGKDGTIGTVIESVVRRAIEAGIIS 95
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 26.7 bits (58), Expect = 2.9
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 100 RMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
RMG+++I A L A LE+ + D E
Sbjct: 15 RMGRQLIQAALA-----LEGVQLGAALEREGSSLLGSDAGE 50
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 27.0 bits (59), Expect = 3.3
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA-GAEDVIEPPVNEDDTDEDRAER 253
++ ++ L++ ++ G + + + +R +
Sbjct: 291 EVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQW 350
Query: 254 YY---------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV D T T LR+AG+ T + SEL
Sbjct: 351 DDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASEL 392
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.5 bits (57), Expect = 3.8
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 218 DADKDQLLDIALDAGAEDVIEPPVNEDDTDE--DRAERYYKVVSTSDNYTD 266
D+D ++ A DAG ++ N ++ + A +Y ST+ +
Sbjct: 14 AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPH 64
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 26.8 bits (58), Expect = 3.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 116 PTSNTVLAAVLEKAKELDVPKDIV 139
++ + +A ++ A+EL + V
Sbjct: 306 GSAGSTVAVAVKAAQELQEGQRCV 329
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 25.7 bits (56), Expect = 4.6
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 207 RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R R + + + + + G + V+ PV+ D+
Sbjct: 80 RHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDN 118
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 333
Score = 26.2 bits (56), Expect = 5.9
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 267 ITTKLREAGIPFETDNGSELLPITTIEDIHQ 297
+ L +A IP++ G + I+DI
Sbjct: 49 MEEMLLKANIPYQIVGGLKFYDRKEIKDILA 79
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.8 bits (55), Expect = 6.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 125 VLEKAKELDVPKDIVER 141
V + EL +P D++ R
Sbjct: 177 VRKIGLELGLPYDMLYR 193
>d2guja1 b.106.1.3 (A:5-143) Phage-like element PBSX protein XkdM
{Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 25.0 bits (55), Expect = 6.7
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 55 LYEVKHCNFQVRTIRTFAPVCMGRR-SSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKG 112
+ +K V ++ + R K G G A K+ S+ ++ VKKG
Sbjct: 19 MAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKG 77
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga
maritima [TaxId: 2336]}
Length = 120
Score = 25.0 bits (54), Expect = 8.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
M K R I T D+ + +AGA+D + P N +
Sbjct: 64 MIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEI 106
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 25.1 bits (54), Expect = 8.3
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 98 YSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
++G ++ AV + L+A L+ L + D
Sbjct: 8 KGKVGATMVRAVAA-----ADDLTLSAELDAGDPLSLLTD 42
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 25.7 bits (55), Expect = 8.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 PTSNTVLAAVLEKAKELDVPKDIV 139
+S ++ A L+ A+EL K +
Sbjct: 262 MSSGGIVWAALQVARELGPGKRVA 285
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.5 bits (55), Expect = 9.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 PTSNTVLAAVLEKAKELDVPKDIV 139
+S +AA L+ A++L +V
Sbjct: 256 ISSGANVAAALKVAQKLGPDARVV 279
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 24.7 bits (53), Expect = 9.6
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 117 TSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTD 176
T+NT L + K ++ P I + K + G +I
Sbjct: 9 TANT-LVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEA----KNMIGKTPATIKAIRPMR 63
Query: 177 KITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
+ V V+ A G +FK R V I TD ++ +LD L+AGA V
Sbjct: 64 DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKV 123
Query: 237 --IEPPV 241
IE P+
Sbjct: 124 FLIEEPM 130
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 24.5 bits (53), Expect = 9.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 214 IKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
I T + ++ + + GA P + D+
Sbjct: 77 IIMTAYGELDMIQESKELGALTHFAKPFDIDE 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,932
Number of extensions: 50156
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 32
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)