Query 021962
Match_columns 305
No_of_seqs 232 out of 1362
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0873 C-4 sterol methyl oxid 100.0 9.6E-60 2.1E-64 427.5 17.8 276 13-296 3-282 (283)
2 COG3000 ERG3 Sterol desaturase 100.0 1.1E-32 2.4E-37 255.4 18.4 149 122-277 91-240 (271)
3 KOG0874 Sphingolipid hydroxyla 100.0 9.7E-35 2.1E-39 253.6 -1.7 231 39-278 15-270 (287)
4 KOG0872 Sterol C5 desaturase [ 100.0 4.2E-29 9.2E-34 224.6 16.2 165 120-297 122-295 (312)
5 PLN02869 fatty aldehyde decarb 100.0 2.2E-29 4.7E-34 249.5 13.1 152 124-285 125-285 (620)
6 PF04116 FA_hydroxylase: Fatty 99.8 3.1E-19 6.8E-24 143.1 7.3 110 131-248 2-114 (114)
7 PLN02434 fatty acid hydroxylas 99.2 7.4E-11 1.6E-15 106.9 11.6 134 125-274 82-230 (237)
8 KOG0539 Sphingolipid fatty aci 98.3 1.5E-06 3.2E-11 76.7 6.9 136 125-275 82-234 (240)
9 PLN02601 beta-carotene hydroxy 98.0 6.3E-05 1.4E-09 68.9 10.5 124 128-261 138-271 (303)
10 PRK07424 bifunctional sterol d 97.5 0.00024 5.1E-09 69.9 7.5 133 134-273 16-175 (406)
11 PF10520 Kua-UEV1_localn: Kua- 94.1 0.11 2.5E-06 45.4 5.7 49 236-290 123-171 (178)
12 cd03514 CrtR_beta-carotene-hyd 85.1 11 0.00024 33.4 10.4 15 152-166 73-87 (207)
13 KOG3011 Ubiquitin-conjugating 58.4 26 0.00056 32.4 5.7 139 123-273 106-265 (293)
14 cd03510 Rhizobitoxine-FADS-lik 57.6 51 0.0011 28.4 7.4 15 152-166 71-85 (175)
15 PLN02434 fatty acid hydroxylas 53.0 19 0.00042 32.9 4.1 43 124-166 164-209 (237)
16 cd03506 Delta6-FADS-like The D 49.2 1.1E+02 0.0023 26.8 8.2 40 253-293 154-204 (204)
17 PF08636 Pkr1: ER protein Pkr1 32.0 1.1E+02 0.0023 23.1 4.5 20 19-38 3-23 (75)
18 COG4792 EscU Type III secretor 28.5 1.1E+02 0.0024 29.3 4.9 40 112-151 171-212 (349)
19 PF11712 Vma12: Endoplasmic re 26.6 3.7E+02 0.008 22.2 7.6 62 79-144 67-133 (142)
20 COG3239 DesA Fatty acid desatu 26.4 1.4E+02 0.003 28.7 5.5 33 237-269 265-297 (343)
21 PF00487 FA_desaturase: Fatty 25.6 89 0.0019 26.9 3.8 37 238-294 216-252 (257)
22 PF06740 DUF1213: Protein of u 24.1 43 0.00093 20.5 1.0 20 278-297 7-26 (29)
23 PF10520 Kua-UEV1_localn: Kua- 22.5 3.1E+02 0.0067 24.0 6.4 43 123-165 84-137 (178)
24 KOG3364 Membrane protein invol 21.4 52 0.0011 27.8 1.3 44 254-297 84-127 (149)
No 1
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=9.6e-60 Score=427.53 Aligned_cols=276 Identities=47% Similarity=0.850 Sum_probs=257.5
Q ss_pred HhcCCchHHHHHHHHhhhcCC-CchHHH-HH-HHHHHHHHHhhhhHHHHHHhhc-CCcccccccCCCCCCCHHHHHHHHH
Q 021962 13 ALGRNLTFAETLWYNYSANKS-DYFLYC-HN-ILFLFLVFSVAPLPFVVIESLR-SDSFDKYKIQPKVRLSFSEMVRCYK 88 (305)
Q Consensus 13 ~~~~~~~~~~~~W~~~~~~~~-~~~~~~-~~-~~~~~~~y~~~~~~f~~~d~~~-p~~~~k~Kiq~~~~~~~~~~~~~~~ 88 (305)
|..+..+|+|.+|..+.++++ +.++.. ++ +++..++||+.|++|+++|... |++++|||||+++++++++.++|++
T Consensus 3 ~~~p~~nflq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k 82 (283)
T KOG0873|consen 3 ALHPLQNFLQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLK 82 (283)
T ss_pred CcchhHHHHHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHH
Confidence 456677899999999999887 666664 33 5666699999999999999985 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhccccCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCC
Q 021962 89 DVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPI 168 (305)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~ 168 (305)
.++.|++++..|++++.++..++.|++.+.|+|++.+++.|+++++++.|+++||.||++|++++||.+||+||++++|.
T Consensus 83 ~vl~n~~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf 162 (283)
T KOG0873|consen 83 VVLLNHFLVVLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPF 162 (283)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhcc
Q 021962 169 GFAAPYAHWAEILILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHY 248 (305)
Q Consensus 169 ~~~a~~~hp~E~ll~~~p~~l~~~l~~~h~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~ 248 (305)
+.+|.|+||+|.++.+++.+.++++++.|+.+.++|++++++.++..||| ||+||.+.+++|+.+++++||+||.
T Consensus 163 ~~sa~YaHp~E~~~lg~~~~~~p~~~~~H~~t~wiw~~l~i~~t~~~HsG-----Y~fPwsl~~~~pfy~ga~~HD~HH~ 237 (283)
T KOG0873|consen 163 GLSAEYAHPLEHLFLGLGTVMGPALLCGHVITLWIWIALRILETVESHSG-----YDFPWSLSKLIPFYGGAEHHDYHHL 237 (283)
T ss_pred hHhhhhcCHHHHHHcCChhhhhhHHhhhHHHHHHHHHHHHHHHHhhccCC-----CCCCccccccCcccCCCcccchhhh
Confidence 99999999999999998877888888889999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCcccCCCchhHHhhcCCCccchhHHHHHHHHHHHHhcCCCCCC
Q 021962 249 VGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNG 296 (305)
Q Consensus 249 ~~~~~~~NYg~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (305)
. +.+||.+.|+.|||++||++.+++.|+..|+++++.++++.+..
T Consensus 238 ~---f~~n~~~~f~~~D~i~GTd~~~~~~k~~~~~~~~~~~~~~~~~~ 282 (283)
T KOG0873|consen 238 V---FIGNFASVFGYLDRIHGTDSTYRALKELKEAIKKKSEKPIKEDE 282 (283)
T ss_pred h---ccccccchhHHHHHHhccCccHhhhhhHHHHHHHhccCchhhcC
Confidence 5 58999999999999999999999999999999999999876643
No 2
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=100.00 E-value=1.1e-32 Score=255.43 Aligned_cols=149 Identities=25% Similarity=0.301 Sum_probs=132.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCCcccccccChHHHHHHHHHHHHHhhhcchhHHHH
Q 021962 122 SGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHMITF 201 (305)
Q Consensus 122 ~~~~~~~~~~~~~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~p~~l~~~l~~~h~~~~ 201 (305)
.....++++++++++.|+++||.||+.|+.++||++|++||+..+|+++++.++||+|.++......+++.++|.++.++
T Consensus 91 ~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~~~~~~ 170 (271)
T COG3000 91 GPLPFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGLSPVAV 170 (271)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999877778888889999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCcccccCCCccccc-ccccChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccchhH
Q 021962 202 WLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYI-PFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQ 277 (305)
Q Consensus 202 ~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~-~~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~~~~ 277 (305)
.++.++..+.++++||| ++.| .+.+++ .++++|++|++||++++ .++|||..+++|||+|||+..+++.
T Consensus 171 ~~~~~~~~~~~~~~H~~-----~~~~-~~~~~~~~v~~~p~~H~lHH~~~~-~~~Nyg~~~~~WDrlFGT~~~~~~~ 240 (271)
T COG3000 171 ALLFIFLLFWAVLIHSN-----LDLP-LPLGWLRYVFNTPRHHRLHHSKDP-YDKNYGVTLTFWDRLFGTYHPPDER 240 (271)
T ss_pred HHHHHHHHHHHHHHhcC-----cccc-CCcccceeeecCchHHHHhccCCC-CCCcchhhhHHHHHHcccCCCCccc
Confidence 99999999999999999 7766 333333 35789999999999864 5799999999999999999876443
No 3
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.98 E-value=9.7e-35 Score=253.62 Aligned_cols=231 Identities=29% Similarity=0.435 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhcCCcccccccCCCCCCCHHH---HHHHHHHHHHHHHHHHh-hhHHHHH--------
Q 021962 39 CHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSE---MVRCYKDVMRMFFLVVG-PLQLVSF-------- 106 (305)
Q Consensus 39 ~~~~~~~~~~y~~~~~~f~~~d~~~p~~~~k~Kiq~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~~~~-------- 106 (305)
+++++...++||+.++.|..++.+ +.++||||+|+.....++ ...+++.|+..+++..+ .+++.-+
T Consensus 15 ~l~lvaPvvvYWv~Sg~f~~yi~l--~~~ekYRiHp~ee~a~rN~vskmaVvk~VllQq~~q~iVgiil~~feg~~~~~~ 92 (287)
T KOG0874|consen 15 VLGLVAPVVVYWVYSGIFHVYITL--HSLEKYRIHPKEEEAERNLVSKMAVVKGVLLQQIIQAIVGIILFHFEGSDATAD 92 (287)
T ss_pred HhhhhhHHHHHhhhcCCceEEEEe--chhhhhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHHHhheEEeeCCCCChH
Confidence 345566778999999988877776 678999999987532111 22445556655555321 2211110
Q ss_pred hhhhhhccccCCC--CC--------cHHHHHHHHHHHHHHHHhhhhhhhhhcC-cchhhhhhhhccCCCCCCCccccccc
Q 021962 107 PSVQMVGIRTGLP--LP--------SGWEILAQLVVYFMVEDYTNYWIHRFLH-CKWGYEKIHRVHHEYTAPIGFAAPYA 175 (305)
Q Consensus 107 ~~~~~~~~~~~~~--~p--------~~~~~~~~~~~~~l~~D~~~Y~~HRllH-~~~ly~~~H~~HH~~~~p~~~~a~~~ 175 (305)
...++...+.++| +| +..-.+.|+..++++.|.|+|++||.|| ++.+|+.+|+.||+-..|++..|.|+
T Consensus 93 ea~qm~k~~a~~~r~ip~~a~~~~y~~~v~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyN 172 (287)
T KOG0874|consen 93 EAQQMWKLRADLPRIIPDAAIYYGYSFLVLARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYN 172 (287)
T ss_pred HHHHHHHhhccccccCCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhc
Confidence 0111122222222 22 3345788999999999999999999999 68999999999999999999999999
Q ss_pred ChHHHHHHH-HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhccCCCCCC
Q 021962 176 HWAEILILG-IPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHYVGEQSH 254 (305)
Q Consensus 176 hp~E~ll~~-~p~~l~~~l~~~h~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~ 254 (305)
||+|+++.. +...+..++.|+++-+.++++++.++.++.+||| |-+|.+|..++ |-+++++||+||+..+ .+
T Consensus 173 hP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCG-----y~lP~dpfqm~-F~NNa~YHDiHHQ~yG-~k 245 (287)
T KOG0874|consen 173 HPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCG-----YWLPGDPFQMF-FPNNAAYHDIHHQLYG-TK 245 (287)
T ss_pred CcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccc-----cccCCCceeEe-ccCCchhhhhhhhhhc-cc
Confidence 999999984 4444555667888888888899999999999999 88998887765 6788999999999753 68
Q ss_pred cccC-CCchhHHhhcCCCccchhHH
Q 021962 255 SNFA-SVFTYCDFLYGTDKGYRYQK 278 (305)
Q Consensus 255 ~NYg-~~~~~wD~lfGT~~~~~~~~ 278 (305)
.||+ ++|++||+++||+.+|...|
T Consensus 246 ~NFsQPFFtfWD~ilgTYmp~~~E~ 270 (287)
T KOG0874|consen 246 YNFSQPFFTFWDRILGTYMPYSLEK 270 (287)
T ss_pred cccCCcHHHHHHHHHhhcCCchhcc
Confidence 8998 78999999999999876443
No 4
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.96 E-value=4.2e-29 Score=224.56 Aligned_cols=165 Identities=23% Similarity=0.372 Sum_probs=142.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCCcccccccChHHHHHHHHHHHHHhhhcchhHH
Q 021962 120 LPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHMI 199 (305)
Q Consensus 120 ~p~~~~~~~~~~~~~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~p~~l~~~l~~~h~~ 199 (305)
.-+|-..+..++++++..|+..||.||.+|++.+||+.|+.||.+..++++++.++||++.+++++|..+.++++|.|..
T Consensus 122 ~~gw~~~~~~i~~flfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip~~I~~Fi~Plh~~ 201 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFLFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIPYHIYPFIFPLHKV 201 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhchhHheeeeecchHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccchh---
Q 021962 200 TFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRY--- 276 (305)
Q Consensus 200 ~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~~~--- 276 (305)
+++....+..++++.+|.| .... ..+.++|+.+|..||.+ ++.|||.++++|||+|||.+.++.
T Consensus 202 t~L~l~~f~~iwt~~IHd~-----~~~~-----l~~~ingaahHtvHH~~---f~~NYG~~tilwDrmfgSfr~p~~~~~ 268 (312)
T KOG0872|consen 202 TYLSLFTFVNIWTISIHDG-----IYGS-----LNPPINGAAHHTVHHTY---FDYNYGQYTILWDRMFGSFRAPDHEDF 268 (312)
T ss_pred HHHHHHHHHHhHheeeecc-----cccc-----ccCccccccccceeeee---EecCCCcEEEeHHhccCcccCcccccc
Confidence 9999999999999999999 3221 12358999999999995 789999999999999999997655
Q ss_pred ------HHHHHHHHHHHHhcCCCCCCC
Q 021962 277 ------QKKLLRKMQEELRGSGEQNGG 297 (305)
Q Consensus 277 ------~~~~~~~~~~~~~~~~~~~~~ 297 (305)
.|+..++..+|-|+...+..|
T Consensus 269 d~~l~~nkdsf~~~~~e~k~f~k~v~G 295 (312)
T KOG0872|consen 269 DIYLRTNKDSFKKEEKEFKGFTKEVEG 295 (312)
T ss_pred chhhccChhHHHHHHHHhhccccccCC
Confidence 366666666666654443333
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=99.96 E-value=2.2e-29 Score=249.55 Aligned_cols=152 Identities=22% Similarity=0.368 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCCcccccccChH-HHHHH----HHHHHHHhhhcchhH
Q 021962 124 WEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWA-EILIL----GIPSFLGPAMAPGHM 198 (305)
Q Consensus 124 ~~~~~~~~~~~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~~~~a~~~hp~-E~ll~----~~p~~l~~~l~~~h~ 198 (305)
..++..+++.+++.|+++||.||++|++++||++|++||++.+|.++++. .||+ |.+.. .+|+.+..+..+.|+
T Consensus 125 ~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~ll~~IPLllli~~g~~hi 203 (620)
T PLN02869 125 DGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFLLFAIPLLTTIFTGTASI 203 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 45688888888999999999999999999999999999999999999886 7986 44443 234333323334688
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccc----cccChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccc
Q 021962 199 ITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIP----FYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGY 274 (305)
Q Consensus 199 ~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~----~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~ 274 (305)
.++++++++..+.++++|||+|. +|+.+.+.++ +++||++|++||+ ++++|||.+|++|||+|||+..
T Consensus 204 ~t~~~yli~~~f~~~~gHSN~El----~P~~~~~~~ppLkyll~TPsfHdlHHs---~fd~NYGlfF~~WDrLFGT~d~- 275 (620)
T PLN02869 204 AAFFGYISYIDFMNNMGHCNFEL----IPKWLFSIFPPLKYLMYTPSYHSLHHT---QFRTNYSLFMPIYDYIYGTMDK- 275 (620)
T ss_pred HHHHHHHHHHHHHhcccccCccc----cccchhccCCcchheecCchHHhHHhc---cCCcCcccchHHHHhccCCCCC-
Confidence 88889999999999999999664 3433222111 3689999999999 4789999999999999999964
Q ss_pred hhHHHHHHHHH
Q 021962 275 RYQKKLLRKMQ 285 (305)
Q Consensus 275 ~~~~~~~~~~~ 285 (305)
++++.+|+..
T Consensus 276 -~s~~l~e~~~ 285 (620)
T PLN02869 276 -SSDTLYEKSL 285 (620)
T ss_pred -CchhHHHHhh
Confidence 3444444444
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.78 E-value=3.1e-19 Score=143.09 Aligned_cols=110 Identities=35% Similarity=0.569 Sum_probs=90.3
Q ss_pred HHHHHHHHhhhhhhhhhcC-cchhhhhhhhccCCCCCCCcccccccChHHHHHHHH-HHHHHhhhcchhHHHHHHHHHHH
Q 021962 131 VVYFMVEDYTNYWIHRFLH-CKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGI-PSFLGPAMAPGHMITFWLWIALR 208 (305)
Q Consensus 131 ~~~~l~~D~~~Y~~HRllH-~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~-p~~l~~~l~~~h~~~~~~~~~~~ 208 (305)
++++++.|+++||+||++| .+++| ++|+.||+.++|+++++.+.+|+|.++..+ +..++.++.+.+..++.++.++.
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALF 80 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 5678999999999999999 56555 999999999999999999999999999864 44455567788999999999999
Q ss_pred HHHHHHhhhCCCCcccccCC-CcccccccccChhHHhhhcc
Q 021962 209 QIEAIDTHSGFSFCRYDFPW-GFTKYIPFYGGADYHDYHHY 248 (305)
Q Consensus 209 ~~~~~~~Hsg~~~~~~~~p~-~~~~~~~~~~~~~~H~~HH~ 248 (305)
.+.+...||| +..+. .+.++ +..++++|+.||+
T Consensus 81 ~~~~~~~H~~-----~~~~~~~~~~~--~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 81 YLWYIFIHSG-----YHHRFPPRLRY--LFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHhhcC-----ccCCCCCcchh--HhcCHHHHHhhCc
Confidence 9999999999 41121 12222 4678999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.24 E-value=7.4e-11 Score=106.94 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-cCcc-------hhhhhhhhccCCCCCCCcccccccChHHHHHHHHHHHHH-hhhcc
Q 021962 125 EILAQLVVYFMVEDYTNYWIHRF-LHCK-------WGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLG-PAMAP 195 (305)
Q Consensus 125 ~~~~~~~~~~l~~D~~~Y~~HRl-lH~~-------~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~p~~l~-~~l~~ 195 (305)
..+..++++++++-+.+|.+||. +|.+ .+....|..||.. |......-+-|.-.++.++++... .++++
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~ 159 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIALFAT 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHHHHcc
Confidence 45667889999999999999998 8841 2334678899964 444333446676655554443322 22333
Q ss_pred hhH-HH-----HHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhccCCCCCCcccCCCchhHHhhcC
Q 021962 196 GHM-IT-----FWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYG 269 (305)
Q Consensus 196 ~h~-~~-----~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfG 269 (305)
... .+ .+.++.+ -+.....|.+ -|.. ++.+ .--++|..||.++ .+.|||....+|||+||
T Consensus 160 ~~~a~~~~~G~l~gYl~Y-d~~Hy~lH~~-------~p~~--~~~r--~lkr~H~~HHfk~--~~~~fGVTs~~wD~vFG 225 (237)
T PLN02434 160 PATAPALFGGGLLGYVMY-DCTHYFLHHG-------QPST--DVLR--NLKKYHLNHHFRD--QDKGFGITSSLWDRVFG 225 (237)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHhc-------Ccch--HHHH--HHHHHHHHHcCCC--CCCCCCcCchHHHHhcC
Confidence 211 11 1111111 2223344554 1211 1111 1268999999975 48999999999999999
Q ss_pred CCccc
Q 021962 270 TDKGY 274 (305)
Q Consensus 270 T~~~~ 274 (305)
|..+.
T Consensus 226 T~~~~ 230 (237)
T PLN02434 226 TLPPS 230 (237)
T ss_pred CCCCc
Confidence 99653
No 8
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=98.31 E-value=1.5e-06 Score=76.72 Aligned_cols=136 Identities=21% Similarity=0.256 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-cCcc---hhhh------hhhhccCCCCCCCcccccccChHHHHHHHHHHHHHh-hh
Q 021962 125 EILAQLVVYFMVEDYTNYWIHRF-LHCK---WGYE------KIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGP-AM 193 (305)
Q Consensus 125 ~~~~~~~~~~l~~D~~~Y~~HRl-lH~~---~ly~------~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~p~~l~~-~l 193 (305)
....-++++.+.+.+.+|..||+ +|-+ .=|| -+|..||.. |..-...-+.|+-..+...|..... ++
T Consensus 82 ~~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~--P~D~~RLVfPP~~~~il~~pfy~~~~~v 159 (240)
T KOG0539|consen 82 VFSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKL--PMDGYRLVFPPTPFAILAAPFYLILSLV 159 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccC--CCCCceEecCCchHHHHHHHHHHHHHHh
Confidence 34556788999999999999998 7743 2222 358899974 3333344477777766655544332 22
Q ss_pred cchhH------HHHHHHHHHHHHHHHHhhhCCCCcccccCCCcccccccccChhHHhhhccCCCCCCcccCCCchhHHhh
Q 021962 194 APGHM------ITFWLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFL 267 (305)
Q Consensus 194 ~~~h~------~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~l 267 (305)
++-.. ...+.|+.+-...-...|.+ .|-.+ . +..--++|--||.++ .+..||-...+||++
T Consensus 160 l~~~~~~a~faG~l~GYV~YDmtHYyLHhg~-------p~~~~--~--~~~lK~yHl~HHfk~--q~~GfGItS~lWD~V 226 (240)
T KOG0539|consen 160 LPHPVAPAGFAGGLLGYVCYDMTHYYLHHGS-------PPKRP--Y--LKHLKKYHLNHHFKH--QDLGFGITSSLWDYV 226 (240)
T ss_pred cCcchhhhhhccchhhhhhhhhhhhhhhcCC-------CCCch--H--HHHHHHHHhhhhhhc--cccCccccHHHHHHH
Confidence 22111 11122333332222233333 11111 1 122368999999874 588999999999999
Q ss_pred cCCCccch
Q 021962 268 YGTDKGYR 275 (305)
Q Consensus 268 fGT~~~~~ 275 (305)
|||....+
T Consensus 227 FgTl~~~~ 234 (240)
T KOG0539|consen 227 FGTLGPLK 234 (240)
T ss_pred hccCCCCc
Confidence 99998653
No 9
>PLN02601 beta-carotene hydroxylase
Probab=97.98 E-value=6.3e-05 Score=68.85 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhhhhh-cCcchhhhhhhhccCCCCCCCcccccccChHHHHHHHHHHHHHhhhcch-----hH-HH
Q 021962 128 AQLVVYFMVEDYTNYWIHRF-LHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPG-----HM-IT 200 (305)
Q Consensus 128 ~~~~~~~l~~D~~~Y~~HRl-lH~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~p~~l~~~l~~~-----h~-~~ 200 (305)
.-++..++..|++-.|.||. +|- +.|.+|+-||+.+. .++- .+-+=+++.++|..+. +.+|. .+ ..
T Consensus 138 al~lgtfvgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~-g~FE---~NDlFaVifAvpAIaL-~~~G~~~~g~~p~~~ 210 (303)
T PLN02601 138 ALSVGAAVGMEFWARWAHRALWHD--SLWNMHESHHKPRE-GAFE---LNDVFAIVNAVPAIGL-LYYGFFNKGLVPGLC 210 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhcCCCCC-CCcc---cccchhhhhHHHHHHH-HHHhhccccccHHHH
Confidence 34466778889999999998 887 46899999998764 2222 2222233334332211 11221 10 00
Q ss_pred H--HHHHHHHHHHHHHhhhCCCCcccccCCCcccccccc-cChhHHhhhccCCCCCCcccCCCc
Q 021962 201 F--WLWIALRQIEAIDTHSGFSFCRYDFPWGFTKYIPFY-GGADYHDYHHYVGEQSHSNFASVF 261 (305)
Q Consensus 201 ~--~~~~~~~~~~~~~~Hsg~~~~~~~~p~~~~~~~~~~-~~~~~H~~HH~~~~~~~~NYg~~~ 261 (305)
+ -+=++...+.-.+.|.|+-. -++|+.+..-.+.+ .-.+.|++||+ ++....+||..+
T Consensus 211 fgiGlGITlYGiaYffVHDgLVH--qRfp~~~~a~~~Y~rrl~~AHklHHa-~Ke~Gv~FGfll 271 (303)
T PLN02601 211 FGAGLGITVFGMAYMFVHDGLVH--KRFPVGPIANVPYLRKVAAAHQLHHT-DKFKGVPYGLFL 271 (303)
T ss_pred HHHHHhHHHHHHHHHHHhhhhhc--cccccCCCCCCHHHHHHHHHHHhhcc-CCcCCccceEEe
Confidence 0 01111122222355666332 23665533211221 23789999998 323456888754
No 10
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.52 E-value=0.00024 Score=69.86 Aligned_cols=133 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHhhhhhhhhhcCcchhhhhhhhccCCCCCCCcc---------cccccChHHHHHHHHHHHHHhhhc-----c----
Q 021962 134 FMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGF---------AAPYAHWAEILILGIPSFLGPAMA-----P---- 195 (305)
Q Consensus 134 ~l~~D~~~Y~~HRllH~~~ly~~~H~~HH~~~~p~~~---------~a~~~hp~E~ll~~~p~~l~~~l~-----~---- 195 (305)
.++.|+.+=.+|-+.|.-..+.|+|..||++-.++-- +..|.+|.|+++..+...++.+++ +
T Consensus 16 ~~~~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (406)
T PRK07424 16 ILWVEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWL 95 (406)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccch
Confidence 3444444444566666433455799999998765432 356789999776532111111111 0
Q ss_pred --hhHHHHHHHH---HHHHHHHHHhhhCCCCcccccC--C--CcccccccccChhHHhhhccCCCCCCcccCCCchhHHh
Q 021962 196 --GHMITFWLWI---ALRQIEAIDTHSGFSFCRYDFP--W--GFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDF 266 (305)
Q Consensus 196 --~h~~~~~~~~---~~~~~~~~~~Hsg~~~~~~~~p--~--~~~~~~~~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~ 266 (305)
.+..-.+.|+ +++...-...-+|-+. -+.| + .|.. ++.++.+|-.||..+ .+.-|+..+++-|+
T Consensus 96 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~d~--~h~~~~~~~~~~~---~~v~~~~h~rh~~~~--~~~~~~~~~~~~d~ 168 (406)
T PRK07424 96 AWLGVLYTLTFLFGAIARGLGLPNADELTDL--THLPGPFETLPSQ---WFVNRPYHWRHHFDN--QNAYYCGTFTLVDK 168 (406)
T ss_pred hhhhhHHHHHHHHHHHHHhcccccccccccc--cCCCCcccCCCcc---CeecCceeEEEEecc--ccceeeeeEEEeeh
Confidence 1111112222 1222111111122111 1123 2 1222 366789999999754 24677888999999
Q ss_pred hcCCCcc
Q 021962 267 LYGTDKG 273 (305)
Q Consensus 267 lfGT~~~ 273 (305)
..||...
T Consensus 169 ~~~ta~s 175 (406)
T PRK07424 169 LMGTALS 175 (406)
T ss_pred hcCcccC
Confidence 9999753
No 11
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=94.13 E-value=0.11 Score=45.39 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=37.0
Q ss_pred cccChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccchhHHHHHHHHHHHHhc
Q 021962 236 FYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRG 290 (305)
Q Consensus 236 ~~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~ 290 (305)
++.++++|..||... .+.||+...++|+.+.-...-++.- |++-.+.++
T Consensus 123 illsr~~H~~HH~aP--h~~~YCI~tGw~N~~Ld~~~f~~~l----E~~i~~~tG 171 (178)
T PF10520_consen 123 ILLSRKHHRIHHVAP--HDTNYCITTGWLNPPLDKIRFWRRL----ERVITFLTG 171 (178)
T ss_pred cccCchhhhccccCc--ccCCeEeecccchHHHHHhhHHHHH----HHHHHHHhC
Confidence 467899999999853 6899999999999998877655433 444444443
No 12
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=85.11 E-value=11 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.0
Q ss_pred hhhhhhhhccCCCCC
Q 021962 152 WGYEKIHRVHHEYTA 166 (305)
Q Consensus 152 ~ly~~~H~~HH~~~~ 166 (305)
..+++-|..||+.++
T Consensus 73 ~~w~~~H~~HH~~~~ 87 (207)
T cd03514 73 PVFRRVHMQHHAHTN 87 (207)
T ss_pred HHHHHHHHHHhcCcC
Confidence 356788999999876
No 13
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=58.35 E-value=26 Score=32.37 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCc------chh---hhhhhhccCCCCCCCcccccccChHHHHHHH-HH---HHH
Q 021962 123 GWEILAQLVVYFMVEDYTNYWIHRFLHC------KWG---YEKIHRVHHEYTAPIGFAAPYAHWAEILILG-IP---SFL 189 (305)
Q Consensus 123 ~~~~~~~~~~~~l~~D~~~Y~~HRllH~------~~l---y~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~-~p---~~l 189 (305)
|...++...++.+..|+..=.+|+..-+ |.+ +-+ =+-||.. |++-.+...+|.+... .. .+.
T Consensus 106 ~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~d----P~tITr~~f~~~~~ll~~a~~f~v~ 180 (293)
T KOG3011|consen 106 WLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHKD----PWTITRRQFANNLHLLARAYTFIVL 180 (293)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccCC----cceeeHHHHhhhhHHHHHhheeEec
Confidence 5566778889999999999999998553 222 233 4578853 3333344444443211 00 001
Q ss_pred Hh-hhc---chh--HHHHHHHHHHHHHHHHHhhhCCCCcccccC-CC-cccccccccChhHHhhhccCCCCCCcccCCCc
Q 021962 190 GP-AMA---PGH--MITFWLWIALRQIEAIDTHSGFSFCRYDFP-WG-FTKYIPFYGGADYHDYHHYVGEQSHSNFASVF 261 (305)
Q Consensus 190 ~~-~l~---~~h--~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~p-~~-~~~~~~~~~~~~~H~~HH~~~~~~~~NYg~~~ 261 (305)
++ ++. +.| +..+.+++++..-..-+.|+= +.+| |- .+.-.-.+....+|..||... .+.||....
T Consensus 181 ~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy-----~gLP~wVv~LQd~hlilpRkhH~iHH~aP--h~~yyCI~t 253 (293)
T KOG3011|consen 181 PLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTY-----SGLPPWVVLLQDMHLILPRKHHRIHHVAP--HNTYYCIVS 253 (293)
T ss_pred CHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchHHHHHhhcceecccccccccccCc--cccceEEee
Confidence 11 111 122 222333444444455567754 3455 21 111111355678999999863 689999999
Q ss_pred hhHHhhcCCCcc
Q 021962 262 TYCDFLYGTDKG 273 (305)
Q Consensus 262 ~~wD~lfGT~~~ 273 (305)
++|.+.----.-
T Consensus 254 Gw~N~~Le~~~f 265 (293)
T KOG3011|consen 254 GWWNWVLDESNF 265 (293)
T ss_pred chhhchHHHHHH
Confidence 999987654433
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=57.62 E-value=51 Score=28.43 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.9
Q ss_pred hhhhhhhhccCCCCC
Q 021962 152 WGYEKIHRVHHEYTA 166 (305)
Q Consensus 152 ~ly~~~H~~HH~~~~ 166 (305)
..|++.|..||+..+
T Consensus 71 ~~~r~~H~~HH~~~~ 85 (175)
T cd03510 71 AAYRRSHLKHHRHLG 85 (175)
T ss_pred HHHHHHHHHHhCccC
Confidence 467888999999764
No 15
>PLN02434 fatty acid hydroxylase
Probab=52.97 E-value=19 Score=32.94 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcch---hhhhhhhccCCCCC
Q 021962 124 WEILAQLVVYFMVEDYTNYWIHRFLHCKW---GYEKIHRVHHEYTA 166 (305)
Q Consensus 124 ~~~~~~~~~~~l~~D~~~Y~~HRllH~~~---ly~~~H~~HH~~~~ 166 (305)
..+....+++.+++|...|..|..--.+. -.|+.|..||--..
T Consensus 164 ~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~~ 209 (237)
T PLN02434 164 PALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRDQ 209 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCC
Confidence 44567788889999999999997532222 36888999996443
No 16
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=49.17 E-value=1.1e+02 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=27.3
Q ss_pred CCcccCCCchhHHhhcCCC-----------ccchhHHHHHHHHHHHHhcCCC
Q 021962 253 SHSNFASVFTYCDFLYGTD-----------KGYRYQKKLLRKMQEELRGSGE 293 (305)
Q Consensus 253 ~~~NYg~~~~~wD~lfGT~-----------~~~~~~~~~~~~~~~~~~~~~~ 293 (305)
...|+. .-.++|+++|-. .+.....+....+|+.++|+++
T Consensus 154 tt~~~~-~~~~~~~l~ggln~qieHHLfP~ip~~~l~~~~~~v~~~~~~~gv 204 (204)
T cd03506 154 TTRNIT-GSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKVAPLVRELCKKHGL 204 (204)
T ss_pred CcccCC-CCCHHHHHhcchhhHHHHhcCCCchhhhHHHHHHHHHHHHHHhCc
Confidence 355663 346888888753 2345567888889999998764
No 17
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=32.02 E-value=1.1e+02 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhh-cCCCchHH
Q 021962 19 TFAETLWYNYSA-NKSDYFLY 38 (305)
Q Consensus 19 ~~~~~~W~~~~~-~~~~~~~~ 38 (305)
+|++++|+.+.. +-+|..+.
T Consensus 3 sf~~~l~esIftPG~tp~li~ 23 (75)
T PF08636_consen 3 SFFEELWESIFTPGTTPTLII 23 (75)
T ss_pred hHHHHHHHHccCCCCChHHHH
Confidence 599999999764 45554443
No 18
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=28.49 E-value=1.1e+02 Score=29.28 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred hccccCCCCCc--HHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Q 021962 112 VGIRTGLPLPS--GWEILAQLVVYFMVEDYTNYWIHRFLHCK 151 (305)
Q Consensus 112 ~~~~~~~~~p~--~~~~~~~~~~~~l~~D~~~Y~~HRllH~~ 151 (305)
+|+++..+.-+ ...++..+++++++..+.-|+.-|..+.+
T Consensus 171 CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K 212 (349)
T COG4792 171 CGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILK 212 (349)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443222 23456667888888888899998887643
No 19
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=26.65 E-value=3.7e+02 Score=22.21 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=28.5
Q ss_pred CHHHHHHHHHH---HHHHHHHHHhhhHHHHHhhhhhhccccCCCCCcHHHHHHH--HHHHHHHHHhhhhhh
Q 021962 79 SFSEMVRCYKD---VMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQ--LVVYFMVEDYTNYWI 144 (305)
Q Consensus 79 ~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~D~~~Y~~ 144 (305)
+.++..+.++. ++.|.+++++...+..+...+... ........+++. ..+..++.|++.|+.
T Consensus 67 t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~----~~~~~~~Rvllgl~~al~vlvAEv~l~~~ 133 (142)
T PF11712_consen 67 TPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSF----GGWSFPYRVLLGLFGALLVLVAEVVLYIR 133 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555553 334655554443333332222111 012223333333 344556679988875
No 20
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=26.44 E-value=1.4e+02 Score=28.74 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=20.7
Q ss_pred ccChhHHhhhccCCCCCCcccCCCchhHHhhcC
Q 021962 237 YGGADYHDYHHYVGEQSHSNFASVFTYCDFLYG 269 (305)
Q Consensus 237 ~~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfG 269 (305)
..+-.+|..||....-+-.||......--...+
T Consensus 265 ~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~ 297 (343)
T COG3239 265 TGNINYHVEHHLFPDVPWYRLPRAHRLIKEALG 297 (343)
T ss_pred cCCccccHhhhCCCCCchhhHHHHHHHHHHHcC
Confidence 345789999998754445566544444444555
No 21
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=25.62 E-value=89 Score=26.87 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=26.0
Q ss_pred cChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccchhHHHHHHHHHHHHhcCCCC
Q 021962 238 GGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQ 294 (305)
Q Consensus 238 ~~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~ 294 (305)
.+-.+|..||... ..+..+..+..+.+++++++.+..
T Consensus 216 ~~~~~H~~HHl~P--------------------~vp~~~l~~~~~~~~~~~~~~~~~ 252 (257)
T PF00487_consen 216 GGLNYHIEHHLFP--------------------GVPWYNLPEAHPILKEVCPEYGVP 252 (257)
T ss_pred cCCCChHHhCCCC--------------------CcCHHHHHHHHHHHHHHHHHcCCc
Confidence 4567999999732 122455678888999999888764
No 22
>PF06740 DUF1213: Protein of unknown function (DUF1213); InterPro: IPR009603 This family represents a short conserved repeat within Drosophila melanogaster proteins of unknown function. Approximately 50 copies of this repeat are present in each protein.
Probab=24.10 E-value=43 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 021962 278 KKLLRKMQEELRGSGEQNGG 297 (305)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~ 297 (305)
..+.+.+|+|++|+++.-+-
T Consensus 7 eSvaeSvKde~eks~e~Srr 26 (29)
T PF06740_consen 7 ESVAESVKDEAEKSKEESRR 26 (29)
T ss_pred hhhhhhhccccccCcCCCCC
Confidence 46778999999999887654
No 23
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=22.51 E-value=3.1e+02 Score=24.01 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCcchh---h--------hhhhhccCCCC
Q 021962 123 GWEILAQLVVYFMVEDYTNYWIHRFLHCKWG---Y--------EKIHRVHHEYT 165 (305)
Q Consensus 123 ~~~~~~~~~~~~l~~D~~~Y~~HRllH~~~l---y--------~~~H~~HH~~~ 165 (305)
+-.++..+.++..+.+-..-|.|...-.|++ + ++-|+.||...
T Consensus 84 ~~~f~~~~~~~v~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP 137 (178)
T PF10520_consen 84 WHCFLFSFAFFVAFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP 137 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc
Confidence 3345556666666666666666653223321 1 56689999863
No 24
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.42 E-value=52 Score=27.83 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred CcccCCCchhHHhhcCCCccchhHHHHHHHHHHHHhcCCCCCCC
Q 021962 254 HSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGG 297 (305)
Q Consensus 254 ~~NYg~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (305)
-+||.......|.++-|...-++-++..+.++++++|.+.+|=+
T Consensus 84 lkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegliGm~ 127 (149)
T KOG3364|consen 84 LKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGLIGMV 127 (149)
T ss_pred HhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcceeeee
Confidence 46898778999999999988888888889999999999888743
Done!