Query 021962
Match_columns 305
No_of_seqs 232 out of 1362
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mfn_A Uncharacterized protein 46.4 6.3 0.00022 32.0 1.0 30 274-303 35-64 (157)
2 2jyl_A Capsid protein P24 (Ca) 36.4 22 0.00077 27.2 2.8 47 239-287 2-49 (105)
3 3n0f_A Isoprene synthase; terp 31.8 20 0.0007 35.4 2.3 48 241-290 4-55 (555)
4 2lr2_A Immunoglobulin G-bindin 28.0 45 0.0016 24.2 3.0 63 239-304 2-66 (88)
5 2ki0_A DS119; beta-alpha-beta, 20.5 42 0.0014 19.9 1.3 15 279-293 15-29 (36)
6 2jwa_A Receptor tyrosine-prote 16.1 1.7E+02 0.0057 18.8 3.5 7 69-75 37-43 (44)
7 1ceu_A Protein (HIV-1 regulato 13.3 89 0.003 20.8 1.6 17 275-291 17-33 (51)
8 2kv9_B Integrin beta-3; platel 12.4 42 0.0014 24.2 -0.2 42 239-281 2-44 (75)
9 4ayb_Q DNA-directed RNA polyme 10.7 1.5E+02 0.005 22.0 2.3 30 261-290 48-77 (104)
10 2q5z_A MAZG, hypothetical prot 10.3 1E+02 0.0034 23.5 1.4 12 239-250 2-13 (114)
No 1
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=46.36 E-value=6.3 Score=31.95 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcccccc
Q 021962 274 YRYQKKLLRKMQEELRGSGEQNGGSYQNLK 303 (305)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (305)
..+-+.+.+.-|+=.++...+++|.|+|-|
T Consensus 35 ~~eArryLdnAkeIL~eka~Ke~~~Y~d~K 64 (157)
T 3mfn_A 35 VIEAKRYLNNAKDILRDKGGKEDGFYQDSK 64 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEECCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccchH
Confidence 566778888888889999999999999865
No 2
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=36.44 E-value=22 Score=27.23 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=19.2
Q ss_pred ChhHHhhhccCCCCCCcccCCCchhHHhhcCCCccchhHHHH-HHHHHHH
Q 021962 239 GADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKL-LRKMQEE 287 (305)
Q Consensus 239 ~~~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~~~~~~~~~-~~~~~~~ 287 (305)
+..+|.-||+.+ .-..-|++ ..+||.-=|...+|+++.+. ++-++.|
T Consensus 2 ~~~~~~~~~~~~-~~~~~~sp-~si~~IkQGpKEPf~dyVdR~~k~l~ae 49 (105)
T 2jyl_A 2 GSSHHHHHHSSG-LVPRGSHM-TSILDIRQGPKEPFRDYVDRFYKTLRAE 49 (105)
T ss_dssp ----------------------CCGGGCCCCSSSCHHHHHHHHHHHHHHH
T ss_pred CcccccccccCc-ceeeeecC-cchhhhhcCCCCcHHHHHHHHHHHHHHh
Confidence 356777788765 23456666 68999999999888776543 3344444
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=31.79 E-value=20 Score=35.44 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=20.9
Q ss_pred hHHhhhccCCCCCCcccCCCchhHHhhcCCCc----cchhHHHHHHHHHHHHhc
Q 021962 241 DYHDYHHYVGEQSHSNFASVFTYCDFLYGTDK----GYRYQKKLLRKMQEELRG 290 (305)
Q Consensus 241 ~~H~~HH~~~~~~~~NYg~~~~~wD~lfGT~~----~~~~~~~~~~~~~~~~~~ 290 (305)
.+|.-||........||.+ ++||--|=... ..+..++..+++|+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~p--s~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~ 55 (555)
T 3n0f_A 4 SHHHHHHGSEARRSADYEP--NSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRR 55 (555)
T ss_dssp -------------CCCCCC--CTTCHHHHTCC-----CHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCc--ccccccccccCCcchhhHHHHHHHHHHHHHHHH
Confidence 4566667654456889987 69966554432 123344555667776653
No 4
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=27.95 E-value=45 Score=24.15 Aligned_cols=63 Identities=16% Similarity=0.328 Sum_probs=36.1
Q ss_pred ChhHHhhhccCCCCCCcccC--CCchhHHhhcCCCccchhHHHHHHHHHHHHhcCCCCCCCccccccC
Q 021962 239 GADYHDYHHYVGEQSHSNFA--SVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGGSYQNLKS 304 (305)
Q Consensus 239 ~~~~H~~HH~~~~~~~~NYg--~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (305)
++.+|.-||+.+ -+-||. ..-.++..+.=..-..++.....+.+|++-- -.|+..|-+|.||.
T Consensus 2 gs~~~~~~~~s~--vdNkfnk~qqnAfyEIl~lPNLneeQrnafiqSLkDDp~-veeq~ngfiqslkd 66 (88)
T 2lr2_A 2 GSSHHHHHHSSG--VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDSY-IDTNNDGAYEGDEL 66 (88)
T ss_dssp -----------C--CCCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTSC-CCTTCSSSCCGGGS
T ss_pred Ccccccccccch--hcchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhccCcc-hhhhcccchhcccc
Confidence 356677777764 234443 3456788888888777777788888887642 25677888888874
No 5
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.46 E-value=42 Score=19.91 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCC
Q 021962 279 KLLRKMQEELRGSGE 293 (305)
Q Consensus 279 ~~~~~~~~~~~~~~~ 293 (305)
+..+++|+||.|.+.
T Consensus 15 eelkklkeeakkani 29 (36)
T 2ki0_A 15 EELKKLKEEAKKANI 29 (36)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccE
Confidence 346889999988664
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.13 E-value=1.7e+02 Score=18.76 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=3.8
Q ss_pred ccccCCC
Q 021962 69 KYKIQPK 75 (305)
Q Consensus 69 k~Kiq~~ 75 (305)
|+|+|.+
T Consensus 37 RR~~~~k 43 (44)
T 2jwa_A 37 RRQQKIR 43 (44)
T ss_dssp HHCSCCC
T ss_pred hhhhhcc
Confidence 5566644
No 7
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=13.28 E-value=89 Score=20.75 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHhcC
Q 021962 275 RYQKKLLRKMQEELRGS 291 (305)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (305)
+.-.+..+++|+||.+|
T Consensus 17 eW~le~LeElk~EAvrH 33 (51)
T 1ceu_A 17 DWTLELLEELKNEAVRH 33 (51)
T ss_dssp HHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567889999999987
No 8
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=12.43 E-value=42 Score=24.19 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=10.6
Q ss_pred ChhHHhhhccCCCCCCcccC-CCchhHHhhcCCCccchhHHHHH
Q 021962 239 GADYHDYHHYVGEQSHSNFA-SVFTYCDFLYGTDKGYRYQKKLL 281 (305)
Q Consensus 239 ~~~~H~~HH~~~~~~~~NYg-~~~~~wD~lfGT~~~~~~~~~~~ 281 (305)
++.+|.-||+.+--.++.=+ ..+.+|=.+ -|..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~LliwKll-~~i~DrREyaKFE 44 (75)
T 2kv9_B 2 GSSHHHHHHSSGLVPRGSHMSPECLIWKLL-ITIHDRKEFAKFE 44 (75)
T ss_dssp --------------------CHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred CcccccccccCCcccCchhHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 35677778876533344333 334556444 4555555554443
No 9
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=10.68 E-value=1.5e+02 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=23.7
Q ss_pred chhHHhhcCCCccchhHHHHHHHHHHHHhc
Q 021962 261 FTYCDFLYGTDKGYRYQKKLLRKMQEELRG 290 (305)
Q Consensus 261 ~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~ 290 (305)
+-+||+|..-...-++-|+.+++.-++-++
T Consensus 48 TEIWd~Ll~gkISIeEAKK~Fedn~~~yek 77 (104)
T 4ayb_Q 48 TEIWDNLLNGKISVDEAKRLFEDNYKDYEK 77 (104)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcccHHHHHHHHHHHHHHHHh
Confidence 579999998888878888888877665544
No 10
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=10.29 E-value=1e+02 Score=23.46 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=0.0
Q ss_pred ChhHHhhhccCC
Q 021962 239 GADYHDYHHYVG 250 (305)
Q Consensus 239 ~~~~H~~HH~~~ 250 (305)
++.+|.-||+.+
T Consensus 2 ~~~~~~~~~~~~ 13 (114)
T 2q5z_A 2 GSSHHHHHHSSG 13 (114)
T ss_dssp ------------
T ss_pred Cccccccccccc
Confidence 356777788754
Done!