Query 021962
Match_columns 305
No_of_seqs 232 out of 1362
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 11:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vcha1 c.87.1.10 (A:6-476) Hy 17.8 15 0.0011 31.2 0.5 40 263-303 417-456 (471)
2 d2pq6a1 c.87.1.10 (A:8-480) (I 14.8 16 0.0011 31.0 -0.1 29 275-303 436-464 (473)
3 d2c1xa1 c.87.1.10 (A:7-456) UD 13.0 18 0.0013 30.6 -0.3 29 274-302 409-437 (450)
4 d1t27a_ d.129.3.4 (A:) Phoshat 10.8 69 0.005 26.5 2.8 35 260-296 228-265 (269)
5 d1puza_ a.218.1.1 (A:) Hypothe 10.7 81 0.0059 20.9 2.7 26 261-286 55-81 (82)
6 d1gh9a_ g.41.6.1 (A:) Hypothet 8.6 37 0.0027 21.9 0.1 23 266-288 36-58 (71)
7 g1o7d.1 a.8.3.1 (B:385-422,C:4 7.0 1.1E+02 0.0079 20.5 2.1 25 265-289 55-81 (95)
8 d1vr4a1 d.230.5.1 (A:1-103) Hy 6.8 1.3E+02 0.0096 20.6 2.5 19 274-292 55-73 (103)
9 d1gcca_ d.10.1.2 (A:) GCC-box 6.6 81 0.0059 20.0 1.1 13 4-16 33-45 (63)
10 d1uxda_ a.35.1.5 (A:) Fructose 6.5 93 0.0068 19.3 1.4 29 276-304 30-58 (59)
No 1
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.79 E-value=15 Score=31.16 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=28.6
Q ss_pred hHHhhcCCCccchhHHHHHHHHHHHHhcCCCCCCCcccccc
Q 021962 263 YCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGGSYQNLK 303 (305)
Q Consensus 263 ~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (305)
-..++.+-. ..+++++.-++++|++++--++||-|++|+.
T Consensus 417 ai~~vl~~~-~~~~~r~ra~~l~e~~~~a~~~gG~s~~~~~ 456 (471)
T d2vcha1 417 VVKGLMEGE-EGKGVRNKMKELKEAACRVLKDDGTSTKALS 456 (471)
T ss_dssp HHHHHHTST-HHHHHHHHHHHHHHHHHHHTSTTSHHHHHHH
T ss_pred HHHHHhCCc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344444322 2345777788999999999999998999873
No 2
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=14.84 E-value=16 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcccccc
Q 021962 275 RYQKKLLRKMQEELRGSGEQNGGSYQNLK 303 (305)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (305)
+++++.-+++++++++.-++||.+++.++
T Consensus 436 ~~~r~~a~~l~~~~~~a~~~gg~s~~~~~ 464 (473)
T d2pq6a1 436 KKMKQKAMELKKKAEENTRPGGCSYMNLN 464 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45677778899999988888887777653
No 3
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=13.03 E-value=18 Score=30.64 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCccccc
Q 021962 274 YRYQKKLLRKMQEELRGSGEQNGGSYQNL 302 (305)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (305)
|++.++..+++++.++++-++||+++.|+
T Consensus 409 y~~~~~r~~~l~~~~~~a~~~~gss~~~~ 437 (450)
T d2c1xa1 409 GKKLRENLRALRETADRAVGPKGSSTENF 437 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 55556677788888998888899888775
No 4
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.76 E-value=69 Score=26.51 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=20.5
Q ss_pred CchhHHhhcCCCccchhHHHHHHHHHHHH---hcCCCCCC
Q 021962 260 VFTYCDFLYGTDKGYRYQKKLLRKMQEEL---RGSGEQNG 296 (305)
Q Consensus 260 ~~~~wD~lfGT~~~~~~~~~~~~~~~~~~---~~~~~~~~ 296 (305)
.|.|.|.++|=... +-++.+++.++|+ ++.++..|
T Consensus 228 ~fcW~DeW~gmTme--dIR~~E~e~q~~L~~~~~~~~~rg 265 (269)
T d1t27a_ 228 LFCWLDKWVDLTMD--DIRRMEEETKRQLDEMRQKDPVKG 265 (269)
T ss_dssp HHHTHHHHTTCCHH--HHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred HheeHHHHcCCCHH--HHHHHHHHHHHHHHHHHhcccccC
Confidence 38999999996642 2334444444444 44555544
No 5
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=10.71 E-value=81 Score=20.91 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=19.5
Q ss_pred chhHHhhcCCCccch-hHHHHHHHHHH
Q 021962 261 FTYCDFLYGTDKGYR-YQKKLLRKMQE 286 (305)
Q Consensus 261 ~~~wD~lfGT~~~~~-~~~~~~~~~~~ 286 (305)
-.+|||+.|....+. ...+..+++++
T Consensus 55 ~dL~~wl~g~~~~p~~~~~~ii~~Irk 81 (82)
T d1puza_ 55 QELLALINGHSETDKGHLIPMLEKIRR 81 (82)
T ss_dssp HHHHHHHHTCSCCSCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHc
Confidence 479999999998764 45667777764
No 6
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.62 E-value=37 Score=21.88 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=17.8
Q ss_pred hhcCCCccchhHHHHHHHHHHHH
Q 021962 266 FLYGTDKGYRYQKKLLRKMQEEL 288 (305)
Q Consensus 266 ~lfGT~~~~~~~~~~~~~~~~~~ 288 (305)
|+||-...+++-.+..++|+||-
T Consensus 36 RIfk~a~~~eeAse~Vq~mQeEi 58 (71)
T d1gh9a_ 36 RIFGRADDFEEASELVRKLQEEK 58 (71)
T ss_dssp SCBSCCSSHHHHHHHHHHHSSCC
T ss_pred hHHhhhccHHHHHHHHHHHHHHH
Confidence 68888888877777778877764
No 7
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.02 E-value=1.1e+02 Score=20.48 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=14.3
Q ss_pred HhhcCCCcc--chhHHHHHHHHHHHHh
Q 021962 265 DFLYGTDKG--YRYQKKLLRKMQEELR 289 (305)
Q Consensus 265 D~lfGT~~~--~~~~~~~~~~~~~~~~ 289 (305)
|-+.||..+ +++.....+++.++++
T Consensus 55 D~i~GTs~~~V~~D~~~~~~~~~~~~~ 81 (95)
T g1o7d.1 55 DAVSGTSRQHVANDYARQLSEGWRPCE 81 (95)
T ss_dssp TTTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcCchHHHHHHHHHHHHHHHHHH
Confidence 667788875 3444444455555544
No 8
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=6.76 E-value=1.3e+02 Score=20.59 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHhcCC
Q 021962 274 YRYQKKLLRKMQEELRGSG 292 (305)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~ 292 (305)
.+..++..+++++||++.+
T Consensus 55 ~~aR~eA~~rl~~~A~~lG 73 (103)
T d1vr4a1 55 KEARDIAMDEMKELAKQKG 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3456788899999998754
No 9
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.60 E-value=81 Score=19.98 Aligned_cols=13 Identities=54% Similarity=0.664 Sum_probs=9.8
Q ss_pred ccCHHHHHHHhcC
Q 021962 4 YATIEDAAAALGR 16 (305)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (305)
|.|+|||+-|.+.
T Consensus 33 f~t~eeAArAYD~ 45 (63)
T d1gcca_ 33 FETAEDAALAYDR 45 (63)
T ss_dssp ESSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 6788888877653
No 10
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.46 E-value=93 Score=19.31 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccccccC
Q 021962 276 YQKKLLRKMQEELRGSGEQNGGSYQNLKS 304 (305)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (305)
-.++..+++.+-|++.|=+-...+++||+
T Consensus 30 vs~~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 58 (59)
T d1uxda_ 30 VSDKTVEKVMAVVREHNYHPNAVAAGLRL 58 (59)
T ss_dssp CTTTTHHHHHHHHHHHTCCCCSCCSCSSC
T ss_pred CCHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 34566788899999988888888888876
Done!