BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021963
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 347 bits (891), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 199/261 (76%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A RCT GL D++GK RVFNTPLC
Sbjct: 16 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+ EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T+IPWD +T+ SV KTGRLL
Sbjct: 256 TIIPWDVDTICKSVIKTGRLL 276
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 347 bits (891), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 199/261 (76%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A RCT GL D++GK RVFNTPLC
Sbjct: 16 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+ EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T+IPWD +T+ SV KTGRLL
Sbjct: 256 TIIPWDVDTICKSVIKTGRLL 276
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 198/261 (75%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A RCT GL D++GK RVFNTPLC
Sbjct: 16 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG Y SQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+ EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T+IPWD +T+ SV KTGRLL
Sbjct: 256 TIIPWDVDTICKSVIKTGRLL 276
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/267 (49%), Positives = 168/267 (62%), Gaps = 7/267 (2%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR T GL ++G RV +TPL E I
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF L VR P G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE+DY LP+ +A + REG D+TL+ +G + + QA + K G+S E++DL+TL+PW
Sbjct: 183 EVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPW 242
Query: 279 DKETVEASVRKTGRLL-----PRSSGY 300
D E V SV KTGR++ PR + +
Sbjct: 243 DYEAVMNSVAKTGRVVLVSDAPRHASF 269
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 163/265 (61%), Gaps = 10/265 (3%)
Query: 41 NLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIV 99
N+ AIN ALH +E D R T GL +RFG RV +TPL E GI+
Sbjct: 52 NMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGIL 111
Query: 100 GFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159
GFA+G+A G + +AEIQF D+I+ D+++N AK RYRSG + L VR P G+
Sbjct: 112 GFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP-LVVRTPVGSGT 170
Query: 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEE 219
GG YHS SPEA F H PGL VV+P +P AKGLL + IR +PVVF EPK LYR EE
Sbjct: 171 RGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREE 230
Query: 220 VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279
VPE DY++ + +A V REG D+TLV +GA ++ +A AE+ S E++DL+TL P D
Sbjct: 231 VPEGDYVVEIGKARVAREGDDVTLVTYGA---VVHKALEAAERVKASVEVVDLQTLNPLD 287
Query: 280 KETVEASVRKTGRLL-----PRSSG 299
+TV SV KTGRL+ P++ G
Sbjct: 288 FDTVLKSVSKTGRLIIAHDSPKTGG 312
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 154/256 (60%), Gaps = 2/256 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL I L+ DP R T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 64 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR +
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE +Y +P+ +A++ REG DIT++ +GA + +A + EKEGIS E++DL+T+ P
Sbjct: 183 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 242
Query: 279 DKETVEASVRKTGRLL 294
D ET+ SV KTGR +
Sbjct: 243 DIETIIGSVEKTGRAI 258
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 154/256 (60%), Gaps = 2/256 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL I L+ DP R T GL FG+ RVF+TPL E GI
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR +
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE +Y +P+ +A++ REG DIT++ +GA + +A + EKEGIS E++DL+T+ P
Sbjct: 182 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 241
Query: 279 DKETVEASVRKTGRLL 294
D ET+ SV KTGR +
Sbjct: 242 DIETIIGSVEKTGRAI 257
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 21/271 (7%)
Query: 39 SLNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQG 97
++ + A+ A+ + LE D RCT GL ++GKSRVF+ P+ E G
Sbjct: 5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESG 64
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
IVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS +F LT+R P G
Sbjct: 65 IVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGG 123
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV 217
+GG HSQSPEA F V GL+ V+P +P AKGLL++ I +PV+F EPK LY
Sbjct: 124 GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPF 183
Query: 218 E----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261
+ VP+ Y +PL +A + R G+D++++ +G + + + A AE
Sbjct: 184 DGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVA---AE 240
Query: 262 KEGISCELIDLKTLIPWDKETVEASVRKTGR 292
+ G+ E+IDL++L P D +T+ SV+KTGR
Sbjct: 241 ESGVDAEVIDLRSLWPLDLDTIVESVKKTGR 271
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 146/237 (61%), Gaps = 20/237 (8%)
Query: 74 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEA 133
RCT GL ++GKSRVF+ P+ E GIVG A+G A G R + EIQFADY +PA DQIV+E
Sbjct: 40 RCTEGLQTKYGKSRVFDAPISESGIVGTAVGXGAYGLRPVVEIQFADYFYPASDQIVSEX 99
Query: 134 AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193
A+ RYRS +F LT+R P G +GG HSQSPEA F V GL+ V P +P AKGL
Sbjct: 100 ARLRYRSAGEF-IAPLTLRXPCGGGIYGGQTHSQSPEAXFTQVCGLRTVXPSNPYDAKGL 158
Query: 194 LLSCIRDPNPVVFFEPKWLYRLSVE----------------EVPEDDYMLPLSEAEVIRE 237
L++ I +PV+F EPK LY + VP+ Y +PL +A + R
Sbjct: 159 LIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRP 218
Query: 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLL 294
G+D++++ +G + + + A AE+ G+ E+IDL++L P D +T+ SV+KTGR +
Sbjct: 219 GNDVSVLTYGTTVYVAQVA---AEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCV 272
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 142/268 (52%), Gaps = 5/268 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AINQ + LE D + + + + GL ++G R+ +TP+ E G
Sbjct: 15 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGF 74
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ A DQ++N AAK Y SG + R P GA
Sbjct: 75 AGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGAS 133
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + +Y + E
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 219 EVPE---DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275
PE D+++P+ +A++ R+G+ IT+V + +A KEG+ CE+I+++T+
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 276 IPWDKETVEASVRKTGRLLPRSSGYWRF 303
P D ET+EASV KT L+ G+ +F
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQF 281
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 142/268 (52%), Gaps = 5/268 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AINQ + LE D + + + + GL ++G R+ +TP+ E G
Sbjct: 3 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ A DQ++N AAK Y SG + R P GA
Sbjct: 63 AGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGAS 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + +Y + E
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181
Query: 219 EVPE---DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275
PE D+++P+ +A++ R+G+ IT+V + +A KEG+ CE+I+++T+
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 241
Query: 276 IPWDKETVEASVRKTGRLLPRSSGYWRF 303
P D ET+EASV KT L+ G+ +F
Sbjct: 242 RPMDMETIEASVMKTNHLVTVEGGWPQF 269
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 139/268 (51%), Gaps = 5/268 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYXXXXXXXXXX-XXRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AINQ LE D + + + + GL ++G R+ +TP+ E G
Sbjct: 15 VTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXGF 74
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ A DQ++N AAK Y SG + R P GA
Sbjct: 75 AGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGG-LQPVPIVFRGPNGAS 133
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + Y + E
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193
Query: 219 EVPE---DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275
PE D+++P+ +A++ R+G+ IT+V + +A KEG+ CE+I+ +T+
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTI 253
Query: 276 IPWDKETVEASVRKTGRLLPRSSGYWRF 303
P D ET+EASV KT L+ G+ +F
Sbjct: 254 RPXDXETIEASVXKTNHLVTVEGGWPQF 281
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 44 SAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLAD--RFGKSRVFNTPLCEQGIVGF 101
+A +A+ +TDPR + R +GL + R R + + E+ V
Sbjct: 326 AAFGEAVTEWAKTDPRTFVVTPAM------REGSGLVEFSRVHPHRYLDVGIAEEVAVTT 379
Query: 102 AIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161
A G+A G R + I ++ ++ A+DQ++++ A N RA G VG
Sbjct: 380 AAGMALQGMRPVVAI-YSTFLQRAYDQVLHDVAI------EHLNVTFCIDRA--GIVGAD 430
Query: 162 GHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G H+ + +F +PG+++ +P+ + +G+L P P R + +V
Sbjct: 431 GATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGPFAIRYP----RGNTAQV 486
Query: 221 PEDDY-MLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279
P + L E E ++ G D+ ++ G L +A D G+ ++ + + P D
Sbjct: 487 PAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVGV----VNARFVKPLD 542
Query: 280 KETV 283
+E +
Sbjct: 543 EEML 546
>pdb|3JU3|A Chain A, Crystal Structure Of Alpha Chain Of Probable 2-Oxoacid
Ferredoxin Oxidoreductase From Thermoplasma Acidophilum
Length = 118
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298
+DIT V WG+Q + D ++EGIS L+ LK P+ E V+ + ++ S
Sbjct: 14 ADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKXFSPFPTEFVKNVLSSANLVIDVES 73
Query: 299 GY 300
Y
Sbjct: 74 NY 75
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 84 GKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA--EIQFADYIFPAFDQIVNEAAKFRYRSG 141
GK V+N+ L E VGF G + A+ E QF D++ A I++E + S
Sbjct: 582 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGA-QSIIDE-----FISS 635
Query: 142 NQFNCGGLT---VRAPYGAVGHGGHYHSQSPEAFFC--HVPGLKVVIPRSPRQAKGLLLS 196
+ G L+ + P+G G G + S E F + + +P +P LL
Sbjct: 636 GEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 695
Query: 197 CIRD--PNPVVFFEPKWLYR 214
+D P++ F PK + R
Sbjct: 696 HGKDGIQRPLIVFTPKSMLR 715
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 84 GKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA--EIQFADYIFPAFDQIVNEAAKFRYRSG 141
GK V+N+ L E VGF G + A+ E QF D++ A I++E + S
Sbjct: 827 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGA-QSIIDE-----FISS 880
Query: 142 NQFNCGGLT---VRAPYGAVGHGGHYHSQSPEAFFC--HVPGLKVVIPRSPRQAKGLLLS 196
+ G L+ + P+G G G + S E F + + +P +P LL
Sbjct: 881 GEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 940
Query: 197 CIRD--PNPVVFFEPKWLYR 214
+D P++ F PK + R
Sbjct: 941 HGKDGIQRPLIVFTPKSMLR 960
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 81/218 (37%), Gaps = 14/218 (6%)
Query: 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNC 146
R + EQ +V A+G A FA + AFDQI + S + N
Sbjct: 354 RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-----RMAAISESNINL 408
Query: 147 GGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206
G G G + A F VP V P S A + + + F
Sbjct: 409 CGSHCGVSIGE--DGPSQMALEDLAMFRSVPTSTVFYP-SDGVATEKAVELAANTKGICF 465
Query: 207 FEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSD--ITLVGWGAQLSIMEQACLDAEKEG 264
+ ED + +A+V+ + D +T++G G L A +KE
Sbjct: 466 IRTSRPENAIIYNNNED---FQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEK 522
Query: 265 ISCELIDLKTLIPWDKETVEASVRKT-GRLLPRSSGYW 301
I+ ++D T+ P D++ + S R T GR+L Y+
Sbjct: 523 INIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYY 560
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 81/218 (37%), Gaps = 14/218 (6%)
Query: 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNC 146
R + EQ +V A+G A FA + AFDQI + S + N
Sbjct: 356 RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-----RMAAISESNINL 410
Query: 147 GGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206
G G G + A F VP V P S A + + + F
Sbjct: 411 CGSHCGVSIGE--DGPSQMALEDLAMFRSVPTSTVFYP-SDGVATEKAVELAANTKGICF 467
Query: 207 FEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSD--ITLVGWGAQLSIMEQACLDAEKEG 264
+ ED + +A+V+ + D +T++G G L A +KE
Sbjct: 468 IRTSRPENAIIYNNNED---FQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEK 524
Query: 265 ISCELIDLKTLIPWDKETVEASVRKT-GRLLPRSSGYW 301
I+ ++D T+ P D++ + S R T GR+L Y+
Sbjct: 525 INIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYY 562
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 174 CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSE 231
CH+ G++V++ PR A RD + ++ P W Y + VEE+ DY P +E
Sbjct: 191 CHILGIRVILDFIPRTAA-------RDSD-LIREHPDWFYWIKVEELA--DYTPPRAE 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,895,940
Number of Sequences: 62578
Number of extensions: 354560
Number of successful extensions: 776
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 24
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)