BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021963
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55FN7|ODBB_DICDI 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1
Length = 370
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/272 (65%), Positives = 221/272 (81%), Gaps = 6/272 (2%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ AIN + IA++ D +A VFGEDVGFGGVFRCT GL D++G SRVFNTPLC
Sbjct: 44 GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLC 103
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGI GFAIGLAA G IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+P
Sbjct: 104 EQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSP 163
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
YGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR
Sbjct: 164 YGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYR 223
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC-LDAEKEGISCELIDLK 273
+VEEVP DY +PL +A +++EG DIT++GWGAQ+ ++ QA + EK GISCELIDL+
Sbjct: 224 SAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLR 283
Query: 274 TLIPWDKETVEASVRKTGRLL-----PRSSGY 300
T+ PWD ETV SV+KTGR++ P++ G+
Sbjct: 284 TIQPWDVETVVESVKKTGRVVISHEAPKTGGW 315
>sp|P35738|ODBB_RAT 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3
Length = 390
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/261 (68%), Positives = 211/261 (80%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ +I AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 123
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP
Sbjct: 124 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAP 183
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 184 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 243
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 244 AAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLR 303
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T++PWD +TV SV KTGRLL
Sbjct: 304 TIVPWDVDTVCKSVIKTGRLL 324
>sp|Q6P3A8|ODBB_MOUSE 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus
musculus GN=Bckdhb PE=2 SV=2
Length = 390
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/261 (68%), Positives = 211/261 (80%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ +I AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 123
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP
Sbjct: 124 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAP 183
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 184 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 243
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 244 AAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLR 303
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T++PWD +TV SV KTGRLL
Sbjct: 304 TIVPWDVDTVCKSVIKTGRLL 324
>sp|P21839|ODBB_BOVIN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos
taurus GN=BCKDHB PE=1 SV=2
Length = 392
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 211/261 (80%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ A+ AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 66 GQTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 125
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 126 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 185
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVV+PRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 186 WGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 245
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 246 AAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLR 305
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T++PWD +TV SV KTGRLL
Sbjct: 306 TILPWDVDTVCKSVIKTGRLL 326
>sp|P21953|ODBB_HUMAN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo
sapiens GN=BCKDHB PE=1 SV=2
Length = 392
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 210/261 (80%), Gaps = 1/261 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 66 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 125
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 126 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 185
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 186 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 245
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKEGISCELIDLK 273
+ EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A + EK G+SCE+IDL+
Sbjct: 246 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 305
Query: 274 TLIPWDKETVEASVRKTGRLL 294
T+IPWD +T+ SV KTGRLL
Sbjct: 306 TIIPWDVDTICKSVIKTGRLL 326
>sp|Q5SLR3|ODBB_THET8 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1
SV=1
Length = 324
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 179/267 (67%), Gaps = 7/267 (2%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR V GEDVG GGVF T GL ++G RV +TPL E I
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF L VR P G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE+DY LP+ +A + REG D+TL+G+G + + QA + K G+S E++DL+TL+PW
Sbjct: 183 EVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPW 242
Query: 279 DKETVEASVRKTGRLL-----PRSSGY 300
D E V SV KTGR++ PR + +
Sbjct: 243 DYEAVMNSVAKTGRVVLVSDAPRHASF 269
>sp|Q72GU2|ODBB_THET2 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus
(strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3
SV=1
Length = 324
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/267 (52%), Positives = 178/267 (66%), Gaps = 7/267 (2%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR V GEDVG GGVF T GL ++G RV +TPL E I
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF L VR P G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE+DY L + +A + REG D+TL+G+G + + QA + K G+S E++DL+TL+PW
Sbjct: 183 EVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPW 242
Query: 279 DKETVEASVRKTGRLL-----PRSSGY 300
D E V SV KTGR++ PR + +
Sbjct: 243 DYEAVMNSVAKTGRVVLVSDAPRHASF 269
>sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis
(strain 168) GN=bfmBAB PE=1 SV=1
Length = 327
Score = 261 bits (668), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 174/256 (67%), Gaps = 2/256 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
++ AIN A+ +E D R +V GEDVG GGVF+ T GL ++FG+ RV +TPL E I
Sbjct: 4 MSYIDAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G IG A G R IAE+QFAD+I PA +QI++EAAK RYRS N ++C + VRAPYG
Sbjct: 64 AGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCP-IVVRAPYGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HG YHSQS EA F + PGLK+V+P +P AKGLL + +RD +PV+FFE K YRL
Sbjct: 123 VHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKG 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVP DDY+LP+ +A+V REG DIT++ +G + QA EK+GIS ++DL+T+ P
Sbjct: 183 EVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGISAHVVDLRTVYPL 242
Query: 279 DKETVEASVRKTGRLL 294
DKE + + KTG++L
Sbjct: 243 DKEAIIEAASKTGKVL 258
>sp|P35488|ODPB_ACHLA Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma
laidlawii GN=pdhB PE=1 SV=1
Length = 327
Score = 251 bits (642), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 173/256 (67%), Gaps = 2/256 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ L AINQA+ A+E D VFGED GF GGVFR T GL ++G++RVF+TP+ E I
Sbjct: 4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+A G + IAEIQF +IFP + +V AA+ R RS QF + +R P+G
Sbjct: 64 VGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVP-MVLRLPHGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
+HS++ E F +PGLKVV P +P AKGLLL+ I DP+PVVF EPK +YR +
Sbjct: 123 IRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQ 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVP + Y +P+ +A+V+++G+D+T+V WG+ + +E+A E EGIS E+IDL+T+ P
Sbjct: 183 EVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKAVKLVEAEGISVEIIDLRTISPI 242
Query: 279 DKETVEASVRKTGRLL 294
D+ET+ SV+KTG+ +
Sbjct: 243 DEETILNSVKKTGKFM 258
>sp|P21874|ODPB_GEOSE Pyruvate dehydrogenase E1 component subunit beta OS=Geobacillus
stearothermophilus GN=pdhB PE=1 SV=2
Length = 325
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 165/257 (64%), Gaps = 2/257 (0%)
Query: 39 SLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQG 97
+ + AI AL I L+ DP +FGEDVG GGVFR T GL FG+ RVF+TPL E G
Sbjct: 3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
I G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 63 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGG 121
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV 217
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR
Sbjct: 122 GVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFR 181
Query: 218 EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277
+EVPE +Y +P+ +A++ REG DIT++ +GA + +A + EKEGIS E++DL+T+ P
Sbjct: 182 QEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQP 241
Query: 278 WDKETVEASVRKTGRLL 294
D ET+ SV KTGR +
Sbjct: 242 LDIETIIGSVEKTGRAI 258
>sp|Q9I1M1|ODBB_PSEAE 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bkdA2 PE=3 SV=1
Length = 350
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 174/271 (64%), Gaps = 21/271 (7%)
Query: 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQG 97
S+ + A+ A+ I LE D VFG+DVG FGGVFRCT GL ++G SRVF+ P+ E G
Sbjct: 16 SMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESG 75
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
I+G A+G+ A G R + EIQFADY++PA DQ+++EAA+ RYRS F +TVR P G
Sbjct: 76 IIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIV-PMTVRMPCGG 134
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY---- 213
+GG HSQSPEA F V GL+ V+P +P AKGLL++CI + +PV+F EPK LY
Sbjct: 135 GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPF 194
Query: 214 ------------RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261
+ +VP+ Y +PL +A ++R G+ +T++ +G + + + A A+
Sbjct: 195 DGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAA---AD 251
Query: 262 KEGISCELIDLKTLIPWDKETVEASVRKTGR 292
+ G+ E+IDL++L P D ET+ ASV+KTGR
Sbjct: 252 ETGLDAEIIDLRSLWPLDLETIVASVKKTGR 282
>sp|P09061|ODBB_PSEPU 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida
GN=bkdA2 PE=1 SV=1
Length = 339
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 170/271 (62%), Gaps = 21/271 (7%)
Query: 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQG 97
++ + A+ A+ + LE D V+G+DVG FGGVFRCT GL ++GKSRVF+ P+ E G
Sbjct: 5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESG 64
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
IVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS +F LT+R P G
Sbjct: 65 IVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGG 123
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY---- 213
+GG HSQSPEA F V GL+ V+P +P AKGLL++ I +PV+F EPK LY
Sbjct: 124 GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPF 183
Query: 214 ------------RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261
+ VP+ Y +PL +A + R G+D++++ +G + + + A AE
Sbjct: 184 DGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVA---AE 240
Query: 262 KEGISCELIDLKTLIPWDKETVEASVRKTGR 292
+ G+ E+IDL++L P D +T+ SV+KTGR
Sbjct: 241 ESGVDAEVIDLRSLWPLDLDTIVESVKKTGR 271
>sp|P0A0A2|ODPB_STAAW Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain MW2) GN=pdhB PE=3 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|P0A0A3|ODPB_STAAU Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus GN=pdhB PE=1 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|Q6GAC0|ODPB_STAAS Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain MSSA476) GN=pdhB PE=3 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|Q6GHZ1|ODPB_STAAR Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain MRSA252) GN=pdhB PE=3 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|P99063|ODPB_STAAN Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain N315) GN=pdhB PE=1 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|P0A0A1|ODPB_STAAM Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1
Length = 325
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R+P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|Q5HGZ0|ODPB_STAAC Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
aureus (strain COL) GN=pdhB PE=3 SV=1
Length = 325
Score = 227 bits (579), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 158/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + E+QF ++F FD I + A+ R+RSG +T+R P+G
Sbjct: 64 GGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRGPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S IR +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DI+++ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DVDTIVASVEKTGR 256
>sp|Q8CPN2|ODPB_STAES Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1
Length = 325
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D VFGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + EIQF +++ FD++ + A+ R+RSG +T+R P+G
Sbjct: 64 GGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S I+ +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DITL+ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DIDTLVASVEKTGR 256
>sp|Q5HQ75|ODPB_STAEQ Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3
SV=1
Length = 325
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AIN AL L+ D VFGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GLA G R + EIQF +++ FD++ + A+ R+RSG +T+R P+G
Sbjct: 64 GGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ + E PGLKVVIP P AKGLL+S I+ +PVV+ E LYR E
Sbjct: 123 VHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFRE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + + +A V +EG+DITL+ +GA + +A + EK+G S E+IDL+T+ P
Sbjct: 183 EVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPI 242
Query: 279 DKETVEASVRKTGR 292
D +T+ ASV KTGR
Sbjct: 243 DIDTLVASVEKTGR 256
>sp|P21882|ODPB_BACSU Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus
subtilis (strain 168) GN=pdhB PE=3 SV=2
Length = 325
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 163/256 (63%), Gaps = 2/256 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL L+ D VFGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 4 MTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+GL G R + EIQF +++ D + + A+ RYRSG ++ +T+R+P+G
Sbjct: 64 GGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSP-VTIRSPFGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H H+ S E PG+KVVIP +P AKGLL+S IRD +PVVF E LYR +
Sbjct: 123 VHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQ 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
EVPE++Y + L +A+V REG+D++++ +GA + +A + EK+GIS E++DL+T+ P
Sbjct: 183 EVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPL 242
Query: 279 DKETVEASVRKTGRLL 294
D +T+ ASV KTGR +
Sbjct: 243 DIDTIIASVEKTGRAI 258
>sp|P47515|ODPB_MYCGE Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=pdhB PE=3 SV=1
Length = 326
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 156/260 (60%), Gaps = 2/260 (0%)
Query: 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLC 94
S +N A+N A+ +ALE D ++G+D GF GGVFR T GL ++G RV++ P+
Sbjct: 2 SKIQVNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIA 61
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
E + G +G A G + I EIQF+ + FPA QI AA+ R RS + L VR P
Sbjct: 62 ENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVY-TAPLVVRMP 120
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
G +HS++ EA + + GLK V+P +P KGL L+ I P+PV+FFEPK LYR
Sbjct: 121 MGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYR 180
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274
+E+P D Y +P+ EA +I EGS++T+V +G + + E + ELIDL+T
Sbjct: 181 AFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLRT 240
Query: 275 LIPWDKETVEASVRKTGRLL 294
+ PWDK+TV SV+KTGRLL
Sbjct: 241 ISPWDKQTVFNSVKKTGRLL 260
>sp|P75391|ODPB_MYCPN Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=pdhB PE=3 SV=1
Length = 327
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 156/255 (61%), Gaps = 2/255 (0%)
Query: 41 NLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQGIV 99
N A+ A+ +ALE DP ++G+D GF GGVFR T GL ++G+ RV++ P+ E +
Sbjct: 8 NNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMA 67
Query: 100 GFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159
G +G A G + I EIQF+ + FPA QI AA+ R RS + C + VR P G
Sbjct: 68 GIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCP-IIVRMPMGGGI 126
Query: 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEE 219
+HS++ EA + + GLK V+P +P KGL L+ + P+PVVFFEPK LYR +E
Sbjct: 127 KALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQE 186
Query: 220 VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279
+P D Y +P+ +A +I +G+++T+V +G + + E + ELIDL+T+ PWD
Sbjct: 187 IPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLRTISPWD 246
Query: 280 KETVEASVRKTGRLL 294
KETV SV+KTGRLL
Sbjct: 247 KETVFNSVKKTGRLL 261
>sp|Q6ABX8|ODPB_LEIXX Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=pdhB PE=3 SV=1
Length = 337
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 152/260 (58%), Gaps = 7/260 (2%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQ 96
+SL + A+N L AL DP+ + GEDVG GGVFR T GL FG SRV +TPL E
Sbjct: 15 QSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEA 74
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156
GIVG AIGLA G R + EIQF ++FP FDQI + AK R + + +R P+G
Sbjct: 75 GIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSM-PVVIRIPHG 133
Query: 157 AVGHGG--HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
GH G +H ++PEA+F H GL++V P +P A ++ I +PV+FFEP Y
Sbjct: 134 --GHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY- 190
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274
EV + LPL + ++R G+D T+V W + + +A A +EG S E++DL++
Sbjct: 191 WPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRAAEIAAEEGRSLEVVDLRS 250
Query: 275 LIPWDKETVEASVRKTGRLL 294
L P D V SV+KTGRL+
Sbjct: 251 LAPIDYAPVLRSVQKTGRLV 270
>sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2
SV=1
Length = 374
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 165/302 (54%), Gaps = 14/302 (4%)
Query: 12 LSRRNLSTACANKQLIQQHDGGVGSG---------KSLNLYSAINQALHIALETDPRAYV 62
++RR L + CA QL+Q + K + + A+N AL + DP ++
Sbjct: 4 IARRRLGSGCALGQLMQALRPAAAAAAARTYSAAAKEMTVREALNSALDEEMSADPSVFL 63
Query: 63 FGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121
GE+VG + G ++ + GL D++G RV +TP+ E G G +G A G R + E ++
Sbjct: 64 MGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNF 123
Query: 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKV 181
A D I+N AAK Y S Q N + R P GA G HSQ A++ HVPGLKV
Sbjct: 124 SMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKV 182
Query: 182 VIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREG 238
+ P S A+GLL + IRDP+PVVF E + LY S EV + + LP+ +A++ +EG
Sbjct: 183 LTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEQEG 242
Query: 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298
D+T+ + + QA KEGIS E+I+L+++ P D+ T+ ASVRKT RL+
Sbjct: 243 KDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTLEE 302
Query: 299 GY 300
G+
Sbjct: 303 GF 304
>sp|Q0J0H4|ODPB2_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os09g0509200 PE=2
SV=1
Length = 376
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 152/261 (58%), Gaps = 5/261 (1%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQ 96
K + + A+N AL + DP ++ GE+VG + G ++ + GL D++G RV +TP+ E
Sbjct: 41 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEA 100
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156
G G A+G A G R + E ++ A D I+N AAK Y S Q + + R P G
Sbjct: 101 GFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVP-IVFRGPNG 159
Query: 157 AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLS 216
A G HSQ A++ HVPGLKV++P S A+GLL + IRDP+PVVF E + LY S
Sbjct: 160 AAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGES 219
Query: 217 V---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273
EV + + LP+ +A++ REG D+T+ + + QA KEGIS E+I+L+
Sbjct: 220 FPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLR 279
Query: 274 TLIPWDKETVEASVRKTGRLL 294
++ P D+ T+ ASVRKT RL+
Sbjct: 280 SIRPLDRATINASVRKTNRLV 300
>sp|O06160|BKDB_MYCTU 3-methyl-2-oxobutanoate dehydrogenase subunit beta OS=Mycobacterium
tuberculosis GN=bkdB PE=1 SV=1
Length = 348
Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 17/274 (6%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQ 96
+SL + AIN+AL+ A+ D R VFGEDV GGVFR T GLAD FG R F+TPL E
Sbjct: 24 QSLTMVQAINRALYDAMAADERVLVFGEDVAVEGGVFRVTEGLADTFGADRCFDTPLAES 83
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-Y 155
I+G A+GLA G + EIQF + +PAFDQ+V+ AK+R R+ + + +TVR P +
Sbjct: 84 AIIGIAVGLALRGFVPVPEIQFDGFSYPAFDQVVSHLAKYRTRTRGEVDM-PVTVRIPSF 142
Query: 156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR- 214
G +G H HS S E+++ H GLKVV+P +P A LL I P+PV++ EPK Y
Sbjct: 143 GGIGAAEH-HSDSTESYWVHTAGLKVVVPSTPGDAYWLLRHAIACPDPVMYLEPKRRYHG 201
Query: 215 --LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE-GISCELID 271
+ PE P+ A V R G+D+T+V +G +S + AE++ S E+ID
Sbjct: 202 RGMVDTSRPEP----PIGHAMVRRSGTDVTVVTYGNLVSTALSSADTAEQQHDWSLEVID 257
Query: 272 LKTLIPWDKETVEASVRKTGRLL-----PRSSGY 300
L++L P D +T+ AS+++TGR + PRS GY
Sbjct: 258 LRSLAPLDFDTIAASIQRTGRCVVMHEGPRSLGY 291
>sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium
meliloti (strain 1021) GN=pdhB PE=3 SV=2
Length = 460
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 148/263 (56%), Gaps = 2/263 (0%)
Query: 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQG 97
++ + A+ A+ + + +V GE+V + G ++ T GL FG RV +TP+ E G
Sbjct: 137 TMTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHG 196
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
G +G A G R I E ++ A DQI+N AAK Y SG Q + R P GA
Sbjct: 197 FAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAP-IVFRGPSGA 255
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV 217
HSQ A++ H+PGLKVV+P + AKGLL + IRDPNPV+F E + LY S
Sbjct: 256 AARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSF 315
Query: 218 EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277
E DD++LP+ +A + R G D TLV +G ++ +A + E +GI E+IDL+T+ P
Sbjct: 316 EVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRP 375
Query: 278 WDKETVEASVRKTGRLLPRSSGY 300
D TV SV+KTGRL+ GY
Sbjct: 376 MDLPTVIESVKKTGRLVTVEEGY 398
>sp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2
Length = 363
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 154/268 (57%), Gaps = 5/268 (1%)
Query: 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCE 95
K + + A+N A+ + DP+ +V GE+VG + G ++ T GL +++G RV++TP+ E
Sbjct: 33 AKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITE 92
Query: 96 QGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155
G G +G A G + + E ++ A D I+N AAK Y S Q N + R P
Sbjct: 93 AGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPN 151
Query: 156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215
GA G HSQ A++ VPGLKV+ P S A+GLL + IRDP+PVVF E + LY
Sbjct: 152 GAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGE 211
Query: 216 SV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272
S EE + + LP+ +A++ REG D+T+V + + +A +EGIS E+I+L
Sbjct: 212 SFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINL 271
Query: 273 KTLIPWDKETVEASVRKTGRLLPRSSGY 300
+++ P D+ T+ ASVRKT RL+ G+
Sbjct: 272 RSIRPLDRATINASVRKTSRLVTVEEGF 299
>sp|Q92IS2|ODPB_RICCN Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=pdhB PE=3
SV=1
Length = 326
Score = 194 bits (493), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 151/263 (57%), Gaps = 3/263 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+ A+ + D + +V GE+V + G ++ T GL ++FG RV +TP+ E G
Sbjct: 3 ITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ AFD IVN AAK Y SG Q C + R P GA
Sbjct: 63 AGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAA 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ+ A + H+PGLKVV P S KGL+L+ IRD NPVVF E + LY S
Sbjct: 122 SRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSF- 180
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
+VP+ +P +A+++REGS +T+V + Q+ + A + + I CE+IDL+T+ P
Sbjct: 181 DVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPL 240
Query: 279 DKETVEASVRKTGRLLPRSSGYW 301
D ET+ SV+KT RL+ G++
Sbjct: 241 DTETIIESVKKTNRLVVVEEGWF 263
>sp|O34591|ACOB_BACSU Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
OS=Bacillus subtilis (strain 168) GN=acoB PE=3 SV=3
Length = 342
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 157/271 (57%), Gaps = 15/271 (5%)
Query: 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-------------FGGVFRCTTGLADRF 83
+ +++ AIN+A+ +A+ D + GEDV +GGV T GL F
Sbjct: 2 ARVISMSDAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEF 61
Query: 84 GKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQ 143
G++RV +TP+ E G +G A+ A+ G R IAE+ F D+I FDQ++N+ AKFRY G +
Sbjct: 62 GRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGK 121
Query: 144 FNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNP 203
+TVR YGA HSQS F +PGLK V+P +P AKGLLL+ I D +P
Sbjct: 122 AQV-PITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDP 180
Query: 204 VVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE 263
V FFE K Y + EVPED Y +PL +A++ REG+D+TL G Q++ +A +
Sbjct: 181 VFFFEDKTSYNMK-GEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSER 239
Query: 264 GISCELIDLKTLIPWDKETVEASVRKTGRLL 294
GI E++D ++L P D++ + S+ KT RL+
Sbjct: 240 GIEAEVLDPRSLSPLDEDAIFTSLEKTNRLI 270
>sp|Q4UKQ7|ODPB_RICFE Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhB PE=3
SV=1
Length = 326
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 151/263 (57%), Gaps = 3/263 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+ A+ + D + +V GE+V + G ++ T GL ++FG RV +TP+ E G
Sbjct: 3 ITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ AFD IVN AAK Y SG Q C + R P GA
Sbjct: 63 AGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKC-PIVFRGPNGAA 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ+ A + HVPGLKVV P S KGL+L+ IRD NPV+F E + LY S
Sbjct: 122 SRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF- 180
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
+VPE +P +A+++REGS +T+V + Q+ + A + + I CE+IDL+T+ P
Sbjct: 181 DVPETIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPL 240
Query: 279 DKETVEASVRKTGRLLPRSSGYW 301
D +T+ SV+KT RL+ G++
Sbjct: 241 DTDTIIESVKKTNRLVIVEEGWF 263
>sp|Q9ZDR3|ODPB_RICPR Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia
prowazekii (strain Madrid E) GN=pdhB PE=3 SV=1
Length = 326
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 152/263 (57%), Gaps = 3/263 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+ A+ + D + +V GE+V + G ++ T GL ++FG RV +TP+ E G
Sbjct: 3 ITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ AFD IVN AAK Y SG Q C + R P GA
Sbjct: 63 AGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAA 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ+ A + H+PGLKVV P S KGL+L+ IRD NPV+F E + LY S
Sbjct: 122 SRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF- 180
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
+VP+ +P S+A++++EGS++T+V + Q+ + + + I CELIDL+T+ P
Sbjct: 181 DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPL 240
Query: 279 DKETVEASVRKTGRLLPRSSGYW 301
D +++ SV+KT RL+ G++
Sbjct: 241 DTDSIIESVKKTNRLVIVEEGWF 263
>sp|P51266|ODPB_PORPU Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra
purpurea GN=pdhB PE=3 SV=1
Length = 331
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 146/254 (57%), Gaps = 3/254 (1%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
++ A+ A +E D V GEDVG +GG ++ T L ++G RV +TP+ E G
Sbjct: 6 MFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R I E ++ AF+QI N A RY SG F L +R P G
Sbjct: 66 MAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQ 124
Query: 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G HSQ EA+F +PGLK+V +P AKGLL S IRD NPVVFFE LY L EE+
Sbjct: 125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEI 183
Query: 221 PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280
PED+Y++PL +AEV+R+G DIT++ + + +A +G E++DL +L P D
Sbjct: 184 PEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDI 243
Query: 281 ETVEASVRKTGRLL 294
+++ SV+KT R+L
Sbjct: 244 DSISVSVKKTHRVL 257
>sp|Q1ACL0|ODPB_CHAVU Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris
GN=pdhB PE=3 SV=1
Length = 326
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 149/254 (58%), Gaps = 3/254 (1%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
LY A+N+ +H +E DP+ +V GED+G +GG ++ T GL +++G R+ +TP+ E G
Sbjct: 6 LYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R I E ++ AF+QI N A Y SG F L VR P G
Sbjct: 66 IAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTT-PLVVRGPGGVGRQ 124
Query: 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G HSQ E++F VPGL++V +P AKGL+ S IR NP++FFE LY + E +
Sbjct: 125 LGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK-ENI 183
Query: 221 PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280
P+ +Y++PL +AE++R G+ IT++ + + QA ++G E+ID+ +L P D
Sbjct: 184 PQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDM 243
Query: 281 ETVEASVRKTGRLL 294
T+ S+RKT ++L
Sbjct: 244 GTISTSLRKTHKVL 257
>sp|Q9C6Z3|ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic
OS=Arabidopsis thaliana GN=PDH-E1 BETA PE=2 SV=1
Length = 406
Score = 191 bits (484), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 157/290 (54%), Gaps = 3/290 (1%)
Query: 6 RRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGE 65
+ F L R+ N ++ D +G L L+ A+ + L ++ DP V GE
Sbjct: 52 KSFGSGLRVRHSQKLIPNAVATKEADTSASTGHELLLFEALQEGLEEEMDRDPHVCVMGE 111
Query: 66 DVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFP 124
DVG +GG ++ T GLAD+FG RV +TP+CE G IG A G R + E ++
Sbjct: 112 DVGHYGGSYKVTKGLADKFGDLRVLDTPICENAFTGMGIGAAMTGLRPVIEGMNMGFLLL 171
Query: 125 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIP 184
AF+QI N Y SG QF + +R P G G HSQ E++F +PG+++V
Sbjct: 172 AFNQISNNCGMLHYTSGGQFTI-PVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVAC 230
Query: 185 RSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 244
+P AKGL+ + IR NPV+ FE LY L E++P++DY+ L EAE++R G IT++
Sbjct: 231 STPYNAKGLMKAAIRSENPVILFEHVLLYNLK-EKIPDEDYVCNLEEAEMVRPGEHITIL 289
Query: 245 GWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLL 294
+ + QA +G E+ID+++L P+D T+ SV+KT R+L
Sbjct: 290 TYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVL 339
>sp|Q68XA8|ODPB_RICTY Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=pdhB PE=3
SV=1
Length = 326
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 150/263 (57%), Gaps = 3/263 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+ A+ + D + +V GE+V + G ++ T GL ++FG RV +TP+ E G
Sbjct: 3 ITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ AFD IVN AAK Y SG Q C + R P GA
Sbjct: 63 AGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAA 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ+ A + H+PGLKVV P S KGL+L+ IRD NPV+F E + LY S
Sbjct: 122 SRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF- 180
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
+VP+ +P S+A++++EGS++T+V + Q+ + + + I CELIDL+T+ P
Sbjct: 181 DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPL 240
Query: 279 DKETVEASVRKTGRLLPRSSGYW 301
D + SV+KT RL+ G++
Sbjct: 241 DTNMIIESVKKTNRLVIVEEGWF 263
>sp|Q6B8T1|ODPB_GRATL Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria
tenuistipitata var. liui GN=pdhB PE=3 SV=1
Length = 323
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 148/254 (58%), Gaps = 3/254 (1%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
++ A+ +A ++ D ++ GEDVG +GG ++ T L ++G RV +TP+ E +G
Sbjct: 6 MFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R I E ++ AF+QI N A RY SG F + +R P G
Sbjct: 66 MAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIP-IVIRGPGGVGRQ 124
Query: 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G HSQ EA+F +PGLK+V +P AKGLL S IRD NPV+FFE LY L +E+
Sbjct: 125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLK-DEL 183
Query: 221 PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280
P D+Y LPL +AE++R+G D+T++ + + QA +D +G + E+IDL +L P D
Sbjct: 184 PNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDI 243
Query: 281 ETVEASVRKTGRLL 294
++ S+ KT +L+
Sbjct: 244 TSIAQSLMKTHKLI 257
>sp|Q1XDM1|ODPB_PORYE Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra
yezoensis GN=pdhB PE=3 SV=1
Length = 331
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 145/254 (57%), Gaps = 3/254 (1%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
++ A+ A + DP V GEDVG +GG ++ T L ++G RV +TP+ E G
Sbjct: 6 MFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R I E ++ AF+QI N A RY SG F L +R P G
Sbjct: 66 MAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQ 124
Query: 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G HSQ EA+F +PGLK+V +P AKGLL S IRD NPVVFFE LY L EE+
Sbjct: 125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEI 183
Query: 221 PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280
P+++Y LPL++ E +R+G DIT++ + + QA KEG E+IDL +L P D
Sbjct: 184 PQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDI 243
Query: 281 ETVEASVRKTGRLL 294
+++ SV+KT ++L
Sbjct: 244 DSISISVKKTHKVL 257
>sp|Q85FX1|ODPB_CYAME Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon
merolae GN=pdhB PE=3 SV=1
Length = 326
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 3/254 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
L +Y A+ +A+ + D R +V GEDVG +GG ++ T L ++G RV +TP+ E
Sbjct: 5 LFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSF 64
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIG A G + + E ++ AF+QI N A Y SG ++ L +R P G
Sbjct: 65 TGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIP-LVIRGPGGIG 123
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ EA+F VPGLK+V +P AKGLL + IRD NPV+F E LY L +
Sbjct: 124 KQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLK-Q 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
E+P+ +Y+LPL +A+V+REGSD+T++ + L + QA +G++ E+IDL +L P
Sbjct: 183 EIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPI 242
Query: 279 DKETVEASVRKTGR 292
D ET+ SV KT +
Sbjct: 243 DLETLVTSVSKTHK 256
>sp|Q1RJX3|ODPB_RICBR Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia
bellii (strain RML369-C) GN=pdhB PE=3 SV=1
Length = 325
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 151/263 (57%), Gaps = 3/263 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+ A+ + D + +V GE+V + G ++ T GL ++FG RV +TP+ E G
Sbjct: 3 ITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGF 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G A+G A G R I E ++ A D IVN AAK Y SG Q C + R P GA
Sbjct: 63 AGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRC-PIVFRGPNGAA 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
HSQ+ A + ++PGLKVV P S KGL+++ IRD NPV+F E + LY S
Sbjct: 122 SRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSF- 180
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278
++ E+ +P +A+V++EG +T+V + Q+ + A + + I+CE+IDL+T+ P
Sbjct: 181 DISENVEPIPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPL 240
Query: 279 DKETVEASVRKTGRLLPRSSGYW 301
D +T+ SV+KTGRL+ G++
Sbjct: 241 DIDTIIESVKKTGRLVVIEEGWF 263
>sp|O64688|ODPB3_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic
OS=Arabidopsis thaliana GN=E1-BETA-2 PE=1 SV=1
Length = 406
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 146/259 (56%), Gaps = 3/259 (1%)
Query: 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCE 95
G L L+ A+ + L ++ DP V GEDVG +GG ++ T GLAD+FG RV +TP+CE
Sbjct: 83 GHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKFGDLRVLDTPICE 142
Query: 96 QGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155
G IG A G R + E ++ AF+QI N Y SG QF + +R P
Sbjct: 143 NAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTI-PVVIRGPG 201
Query: 156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215
G G HSQ E++F +PG+++V +P AKGL+ + IR NPV+ FE LY L
Sbjct: 202 GVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL 261
Query: 216 SVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275
E +P+++Y+ L EAE++R G IT++ + + QA +G E+ID+++L
Sbjct: 262 K-ESIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 320
Query: 276 IPWDKETVEASVRKTGRLL 294
P+D T+ SV+KT R+L
Sbjct: 321 KPFDLYTIGNSVKKTHRVL 339
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
OS=Pisum sativum PE=2 SV=1
Length = 359
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 150/267 (56%), Gaps = 5/267 (1%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQ 96
K + + A+N AL + + D + ++ GE+VG + G ++ T GL +++G RV +TP+ E
Sbjct: 24 KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEA 83
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156
G G +G A G + + E ++ A D I+N AAK Y S Q + + R G
Sbjct: 84 GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVP-IVFRGLNG 142
Query: 157 AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLS 216
G HS +++ PGLKV++P S A+GLL + IRDP+PVVF E + LY S
Sbjct: 143 DAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGES 202
Query: 217 V---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273
EV + + LP+ +A++ REG D+T+ + + +A EKEGIS E+I+L+
Sbjct: 203 FPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLR 262
Query: 274 TLIPWDKETVEASVRKTGRLLPRSSGY 300
++ P D+ T+ ASVRKT RL+ G+
Sbjct: 263 SIRPLDRPTINASVRKTNRLVTVEEGF 289
>sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1
Length = 356
Score = 181 bits (458), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 154/269 (57%), Gaps = 9/269 (3%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQ 96
K + + AIN AL L D + ++ GE+V + G ++ T GL D++G R+ +TP+ E
Sbjct: 27 KEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEA 86
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQ-FNCGGLTVRAPY 155
G G +G A G R I E ++ A D I+N +AK Y SG + FN + R P
Sbjct: 87 GFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNP--IVWRGPN 144
Query: 156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR- 214
G G HSQ A++ VPGLKVV P S +GLL S IRD NPVV+ E + LY
Sbjct: 145 GPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNY 204
Query: 215 ---LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271
LS +E + +Y++P+ +A+V REG D+T+VG+ +S +A KEGIS E+I+
Sbjct: 205 KFDLSDQE-QDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVIN 263
Query: 272 LKTLIPWDKETVEASVRKTGRLLPRSSGY 300
L+T+ P D ET+ S++KT +L+ G+
Sbjct: 264 LRTIRPIDAETIVNSLKKTNKLVTVEEGW 292
>sp|P27746|ACOB_CUPNH Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier 337) GN=acoB PE=1 SV=3
Length = 338
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 14/269 (5%)
Query: 37 GKSLNLYSAINQALHIALETDPRAYVFGEDV-----------GFGGVFRCTTGLADRFGK 85
+ L++ AIN+A+ + DP + GED+ +GGV T GL + G
Sbjct: 2 ARKLSIKLAINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHG- 60
Query: 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFN 145
R+ +TPL E VG AIG AA G R IAE+ F D++ FDQI N+AAKFRY G +
Sbjct: 61 DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAE 120
Query: 146 CGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 205
+ +RA GA HSQ F H+PGLKVV P +P KGLL+ IRD +PV+
Sbjct: 121 TP-VVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVI 179
Query: 206 FFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGI 265
F E K LY L EVPE Y +P EA ++R+G D+++V +G + +A KEGI
Sbjct: 180 FCEHKNLYGLE-GEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGI 238
Query: 266 SCELIDLKTLIPWDKETVEASVRKTGRLL 294
E++DL+TL P D +TV SV TGRL+
Sbjct: 239 EAEIVDLRTLSPLDMDTVLESVENTGRLV 267
>sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
OS=Homo sapiens GN=PDHB PE=1 SV=3
Length = 359
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 19/303 (6%)
Query: 5 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFG 64
LR G L RR TA A Q+ + AINQ + LE D + ++ G
Sbjct: 12 LREVSGLLKRRFHWTAPAALQV--------------TVRDAINQGMDEELERDEKVFLLG 57
Query: 65 EDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123
E+V + G ++ + GL ++G R+ +TP+ E G G A+G A G R I E ++
Sbjct: 58 EEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSM 117
Query: 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
A DQ++N AAK Y SG + R P GA HSQ A++ H PGLKVV
Sbjct: 118 QAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVS 176
Query: 184 PRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIREGSD 240
P + AKGL+ S IRD NPVV E + +Y + E PE D+++P+ +A++ R+G+
Sbjct: 177 PWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTH 236
Query: 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300
IT+V + +A KEG+ CE+I+++T+ P D ET+EASV KT L+ G+
Sbjct: 237 ITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGW 296
Query: 301 WRF 303
+F
Sbjct: 297 PQF 299
>sp|O66113|ODPB_ZYMMO Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=pdhB PE=3 SV=2
Length = 462
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 142/261 (54%), Gaps = 2/261 (0%)
Query: 41 NLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIV 99
L A+ A+ + D R +V GE+V + G ++ T GL FG RV +TP+ E G
Sbjct: 140 TLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFS 199
Query: 100 GFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159
G +G A G R + E ++ A D I+N AAK Y SG Q C + R P GA
Sbjct: 200 GIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCP-IVFRGPNGAAP 258
Query: 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEE 219
G H+Q+ ++ VPGL V+ P AKGLL + IR +PVVF E + LY + +
Sbjct: 259 RVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDV 318
Query: 220 VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279
DD++LP+ +A +IREG D+T+V + +S A KEGI E+IDL+TL P D
Sbjct: 319 PKMDDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLD 378
Query: 280 KETVEASVRKTGRLLPRSSGY 300
KET+ S+ KT R++ G+
Sbjct: 379 KETILQSLAKTNRIVTVEDGW 399
>sp|Q32RM2|ODPB_ZYGCR Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema
circumcarinatum GN=pdhB PE=3 SV=2
Length = 325
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 146/254 (57%), Gaps = 3/254 (1%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
L+ A+ Q L ++ DPR V GEDVG +GG ++ T G A+R+G R+ +TP+ E G
Sbjct: 6 LFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R + E ++ AF+QI N A Y SG F + +R P G
Sbjct: 66 MAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTI-PIVIRGPGGVGRQ 124
Query: 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV 220
G HSQ E++F VPGL++V +P AKGL+ S IR NP++ FE LY L E++
Sbjct: 125 LGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLK-EDL 183
Query: 221 PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280
E++Y++ L +AEV+R G+DIT++ + + QA +G E+ID+ +L P+D
Sbjct: 184 AEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDL 243
Query: 281 ETVEASVRKTGRLL 294
T+ ASV KT ++L
Sbjct: 244 GTIGASVCKTHKVL 257
>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
OS=Bos taurus GN=PDHB PE=1 SV=2
Length = 359
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 158/303 (52%), Gaps = 19/303 (6%)
Query: 5 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFG 64
L + G L RR TA A Q+ + AINQ + LE D + ++ G
Sbjct: 12 LEQVSGLLRRRFHRTAPAALQV--------------TVREAINQGMDEELERDEKVFLLG 57
Query: 65 EDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123
E+V + G ++ + GL ++G R+ +TP+ E G G A+G A G R I E ++
Sbjct: 58 EEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSM 117
Query: 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
A DQ++N AAK Y SG + R P GA HSQ A++ H PGLKVV
Sbjct: 118 QAIDQVINSAAKTYYMSGG-LQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVS 176
Query: 184 PRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSD 240
P S AKGL+ S IRD NPVV E + +Y + E E D+++P+ +A++ R+G+
Sbjct: 177 PWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTH 236
Query: 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300
+T+V + +A KEGI CE+I+L+T+ P D ET+E SV KT L+ G+
Sbjct: 237 VTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGW 296
Query: 301 WRF 303
+F
Sbjct: 297 PQF 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,408,311
Number of Sequences: 539616
Number of extensions: 5107426
Number of successful extensions: 11307
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 10783
Number of HSP's gapped (non-prelim): 479
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)