Query 021963
Match_columns 305
No_of_seqs 209 out of 1504
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.5E-66 3.3E-71 467.1 27.3 263 39-302 1-264 (324)
2 COG3958 Transketolase, C-termi 100.0 2.7E-66 5.9E-71 462.5 26.0 249 38-302 5-256 (312)
3 CHL00144 odpB pyruvate dehydro 100.0 8.8E-65 1.9E-69 474.9 30.0 260 39-301 3-264 (327)
4 PTZ00182 3-methyl-2-oxobutanat 100.0 1.6E-63 3.5E-68 470.6 29.9 265 37-302 32-297 (355)
5 PRK09212 pyruvate dehydrogenas 100.0 3.1E-63 6.8E-68 464.9 30.5 260 39-301 3-264 (327)
6 PLN02683 pyruvate dehydrogenas 100.0 7.3E-63 1.6E-67 466.3 31.0 264 37-301 24-291 (356)
7 PRK11892 pyruvate dehydrogenas 100.0 4.2E-62 9.1E-67 473.6 30.1 263 38-302 140-404 (464)
8 PLN02225 1-deoxy-D-xylulose-5- 100.0 6.2E-59 1.4E-63 464.9 30.0 252 39-304 380-633 (701)
9 KOG0524 Pyruvate dehydrogenase 100.0 2.3E-57 5E-62 399.2 22.5 265 36-302 31-300 (359)
10 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.6E-56 3.4E-61 432.8 27.4 257 30-301 304-564 (627)
11 PLN02234 1-deoxy-D-xylulose-5- 100.0 7.9E-56 1.7E-60 441.9 28.0 269 21-304 336-610 (641)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 3.3E-55 7.2E-60 440.7 28.4 251 39-304 355-609 (677)
13 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.5E-54 3.2E-59 436.1 30.1 250 39-303 309-560 (617)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 3E-53 6.4E-58 424.3 27.1 248 39-304 277-528 (581)
15 PRK12571 1-deoxy-D-xylulose-5- 100.0 3.5E-52 7.6E-57 420.2 29.4 250 39-304 318-570 (641)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 8E-52 1.7E-56 415.0 27.9 244 40-304 279-526 (580)
17 KOG0525 Branched chain alpha-k 100.0 2.5E-51 5.4E-56 356.6 16.8 266 36-301 37-303 (362)
18 TIGR00232 tktlase_bact transke 100.0 3.9E-49 8.6E-54 399.0 26.1 250 37-304 346-609 (653)
19 PRK12753 transketolase; Review 100.0 2.8E-48 6.2E-53 392.8 25.1 254 37-305 352-620 (663)
20 PTZ00089 transketolase; Provis 100.0 3.3E-48 7.2E-53 392.7 23.8 253 37-304 352-617 (661)
21 PRK05899 transketolase; Review 100.0 2.1E-47 4.6E-52 386.1 25.4 249 38-304 317-580 (624)
22 KOG0523 Transketolase [Carbohy 100.0 7.6E-48 1.7E-52 370.5 20.2 250 35-302 314-570 (632)
23 PLN02790 transketolase 100.0 7E-47 1.5E-51 382.7 27.1 254 38-305 342-611 (654)
24 PRK12754 transketolase; Review 100.0 1.1E-46 2.5E-51 379.4 25.6 253 38-305 353-620 (663)
25 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 9.5E-43 2.1E-47 296.8 17.0 165 44-210 1-167 (167)
26 PRK09405 aceE pyruvate dehydro 100.0 1.1E-40 2.4E-45 340.3 25.8 249 37-299 492-798 (891)
27 TIGR03186 AKGDH_not_PDH alpha- 100.0 7.8E-41 1.7E-45 341.4 24.6 247 37-299 487-784 (889)
28 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.6E-39 1.7E-43 328.5 28.8 293 3-304 546-881 (929)
29 PRK09404 sucA 2-oxoglutarate d 100.0 6.3E-39 1.4E-43 330.3 26.9 288 4-301 546-870 (924)
30 PRK13012 2-oxoacid dehydrogena 100.0 6.1E-38 1.3E-42 321.4 24.8 250 37-299 500-814 (896)
31 cd07033 TPP_PYR_DXS_TK_like Py 100.0 3.2E-37 7E-42 260.5 17.9 155 44-210 1-156 (156)
32 PF02779 Transket_pyr: Transke 100.0 2.4E-37 5.2E-42 266.7 16.0 169 38-215 1-177 (178)
33 COG0021 TktA Transketolase [Ca 100.0 1.5E-34 3.1E-39 281.8 23.9 254 38-305 352-619 (663)
34 smart00861 Transket_pyr Transk 100.0 4.9E-31 1.1E-35 225.1 16.5 154 41-209 1-165 (168)
35 PRK07119 2-ketoisovalerate fer 99.9 3.2E-22 6.8E-27 189.5 25.3 232 57-300 21-308 (352)
36 PRK08659 2-oxoglutarate ferred 99.9 3.2E-21 7E-26 184.0 24.0 203 86-299 49-334 (376)
37 PRK09627 oorA 2-oxoglutarate-a 99.9 2.3E-20 4.9E-25 177.9 24.0 204 86-300 48-336 (375)
38 TIGR03336 IOR_alpha indolepyru 99.8 6E-20 1.3E-24 185.3 20.9 202 86-301 46-290 (595)
39 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 3.6E-19 7.7E-24 178.2 21.8 208 86-302 237-527 (562)
40 PRK05261 putative phosphoketol 99.8 1.4E-18 3E-23 176.6 25.3 250 38-301 389-689 (785)
41 PRK09622 porA pyruvate flavodo 99.8 3.3E-18 7.2E-23 165.0 25.2 230 56-301 26-330 (407)
42 PRK08366 vorA 2-ketoisovalerat 99.8 5.9E-18 1.3E-22 162.0 25.0 201 90-301 53-322 (390)
43 PRK08367 porA pyruvate ferredo 99.8 8.9E-17 1.9E-21 154.2 25.3 203 87-301 52-324 (394)
44 COG4231 Indolepyruvate ferredo 99.7 1.3E-15 2.9E-20 149.4 19.5 199 86-301 58-307 (640)
45 PF02780 Transketolase_C: Tran 99.7 1E-17 2.2E-22 135.9 3.8 72 230-301 1-72 (124)
46 KOG0450 2-oxoglutarate dehydro 99.6 2.1E-14 4.5E-19 141.0 18.0 280 3-291 611-945 (1017)
47 COG0674 PorA Pyruvate:ferredox 99.6 6.5E-13 1.4E-17 126.5 23.9 213 78-302 41-323 (365)
48 PRK12270 kgd alpha-ketoglutara 99.6 2.1E-13 4.5E-18 139.2 19.9 278 3-291 849-1160(1228)
49 TIGR02176 pyruv_ox_red pyruvat 99.5 2.6E-12 5.7E-17 137.7 25.5 203 87-300 53-327 (1165)
50 KOG0451 Predicted 2-oxoglutara 99.5 1.8E-13 3.8E-18 131.8 13.8 272 14-293 537-850 (913)
51 PRK13030 2-oxoacid ferredoxin 99.5 1.4E-12 2.9E-17 138.3 18.3 249 39-301 19-342 (1159)
52 PRK09193 indolepyruvate ferred 99.4 7.3E-12 1.6E-16 132.6 19.0 257 21-301 13-350 (1165)
53 TIGR00759 aceE pyruvate dehydr 99.4 1.2E-11 2.6E-16 126.7 18.1 229 37-282 486-766 (885)
54 cd06586 TPP_enzyme_PYR Pyrimid 99.4 1E-11 2.2E-16 103.6 13.5 117 81-209 31-153 (154)
55 PRK13029 2-oxoacid ferredoxin 99.4 1.6E-11 3.5E-16 129.8 16.4 199 86-301 85-353 (1186)
56 COG0567 SucA 2-oxoglutarate de 99.3 3.7E-11 8.1E-16 122.6 13.3 280 3-291 527-838 (906)
57 COG2609 AceE Pyruvate dehydrog 99.2 6.7E-10 1.5E-14 110.1 16.5 242 21-280 476-767 (887)
58 PF01855 POR_N: Pyruvate flavo 99.0 3E-09 6.5E-14 95.3 9.1 116 88-213 38-157 (230)
59 COG3957 Phosphoketolase [Carbo 98.6 2E-06 4.2E-11 86.2 17.0 250 42-299 403-697 (793)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.5 0.0045 9.7E-08 51.9 14.3 110 85-208 41-158 (160)
61 cd07035 TPP_PYR_POX_like Pyrim 97.5 0.0018 4E-08 53.9 11.3 112 86-209 35-154 (155)
62 TIGR03297 Ppyr-DeCO2ase phosph 97.2 0.0032 7E-08 60.2 10.8 122 82-212 23-154 (361)
63 PF03894 XFP: D-xylulose 5-pho 97.2 0.023 5.1E-07 48.5 14.4 153 44-199 2-178 (179)
64 PF02776 TPP_enzyme_N: Thiamin 97.0 0.015 3.2E-07 49.5 12.4 126 76-214 31-165 (172)
65 PRK06965 acetolactate synthase 96.9 0.038 8.2E-07 56.2 15.8 257 14-299 5-297 (587)
66 PRK08199 thiamine pyrophosphat 96.6 0.35 7.6E-06 48.9 20.4 200 86-298 47-279 (557)
67 PRK08322 acetolactate synthase 96.6 0.13 2.8E-06 51.7 17.0 117 86-214 39-163 (547)
68 TIGR02418 acolac_catab acetola 96.4 0.092 2E-06 52.8 14.9 170 86-267 37-226 (539)
69 cd07039 TPP_PYR_POX Pyrimidine 96.4 0.17 3.7E-06 42.9 14.3 114 86-211 39-159 (164)
70 PRK07525 sulfoacetaldehyde ace 96.4 0.15 3.2E-06 52.0 16.4 201 86-298 44-275 (588)
71 TIGR00118 acolac_lg acetolacta 96.4 0.15 3.2E-06 51.6 16.2 116 86-213 40-163 (558)
72 PRK07092 benzoylformate decarb 96.4 0.34 7.4E-06 48.6 18.6 200 87-298 50-281 (530)
73 PRK06466 acetolactate synthase 96.3 0.15 3.3E-06 51.7 15.9 115 86-212 43-165 (574)
74 PRK07710 acetolactate synthase 96.3 0.22 4.8E-06 50.4 16.8 116 85-212 53-176 (571)
75 PRK12474 hypothetical protein; 96.3 0.89 1.9E-05 45.5 20.8 201 86-298 44-275 (518)
76 TIGR03457 sulphoacet_xsc sulfo 96.2 0.29 6.3E-06 49.7 17.5 201 86-298 40-271 (579)
77 PRK07282 acetolactate synthase 96.2 0.22 4.8E-06 50.5 16.1 150 47-213 13-172 (566)
78 PRK06457 pyruvate dehydrogenas 96.2 0.33 7.1E-06 49.0 17.3 117 86-214 40-163 (549)
79 PRK05858 hypothetical protein; 96.1 0.3 6.5E-06 49.2 16.6 201 86-298 43-271 (542)
80 TIGR03845 sulfopyru_alph sulfo 96.1 0.1 2.2E-06 44.0 10.9 113 86-211 35-155 (157)
81 PRK07586 hypothetical protein; 96.0 0.41 8.8E-06 47.8 17.1 199 87-297 41-270 (514)
82 PRK06725 acetolactate synthase 96.0 0.32 7E-06 49.3 16.5 116 86-213 53-176 (570)
83 PRK08617 acetolactate synthase 96.0 0.4 8.6E-06 48.4 16.9 116 86-213 43-166 (552)
84 PRK07979 acetolactate synthase 96.0 1.1 2.3E-05 45.6 20.0 116 86-213 43-166 (574)
85 PRK07418 acetolactate synthase 95.9 0.51 1.1E-05 48.4 17.5 116 86-213 61-184 (616)
86 PRK08155 acetolactate synthase 95.9 0.47 1E-05 48.0 17.1 116 86-213 52-175 (564)
87 PRK08979 acetolactate synthase 95.6 0.55 1.2E-05 47.7 16.3 115 86-212 43-165 (572)
88 cd07037 TPP_PYR_MenD Pyrimidin 95.6 0.19 4.2E-06 42.5 11.0 110 86-207 36-159 (162)
89 PRK06456 acetolactate synthase 95.6 0.39 8.4E-06 48.7 14.9 115 87-213 45-167 (572)
90 PRK06048 acetolactate synthase 95.5 0.82 1.8E-05 46.3 17.0 115 86-212 46-168 (561)
91 PRK07524 hypothetical protein; 95.5 0.49 1.1E-05 47.5 15.4 116 86-213 40-166 (535)
92 TIGR01504 glyox_carbo_lig glyo 95.5 0.9 2E-05 46.3 17.4 201 87-299 43-279 (588)
93 PRK09124 pyruvate dehydrogenas 95.4 0.71 1.5E-05 46.8 16.3 115 87-213 43-164 (574)
94 PRK07789 acetolactate synthase 95.4 0.44 9.5E-06 48.8 14.8 117 86-214 70-194 (612)
95 PLN02470 acetolactate synthase 95.4 0.39 8.4E-06 48.9 14.3 159 35-212 8-174 (585)
96 PRK08978 acetolactate synthase 95.4 0.5 1.1E-05 47.6 14.9 116 86-213 39-162 (548)
97 PRK08327 acetolactate synthase 95.3 0.74 1.6E-05 46.7 15.8 151 47-213 10-183 (569)
98 PRK11269 glyoxylate carboligas 95.3 0.71 1.5E-05 47.1 15.7 116 86-213 43-167 (591)
99 PRK08266 hypothetical protein; 95.1 0.73 1.6E-05 46.3 15.2 116 86-213 44-170 (542)
100 PLN02573 pyruvate decarboxylas 95.1 0.68 1.5E-05 47.1 14.8 151 46-214 18-185 (578)
101 PRK08611 pyruvate oxidase; Pro 95.1 0.65 1.4E-05 47.2 14.7 117 86-214 44-167 (576)
102 cd02001 TPP_ComE_PpyrDC Thiami 95.1 0.79 1.7E-05 38.4 12.9 144 44-206 2-150 (157)
103 PRK09259 putative oxalyl-CoA d 95.0 0.5 1.1E-05 47.9 13.6 117 86-214 48-174 (569)
104 PRK07064 hypothetical protein; 95.0 0.7 1.5E-05 46.5 14.5 114 87-212 43-167 (544)
105 PRK09107 acetolactate synthase 94.9 0.46 1E-05 48.5 13.2 149 47-212 14-172 (595)
106 PRK06112 acetolactate synthase 94.8 3.7 8.1E-05 41.6 19.3 117 86-214 50-174 (578)
107 CHL00099 ilvB acetohydroxyacid 94.7 1.1 2.3E-05 45.7 15.3 114 87-212 53-174 (585)
108 PRK08527 acetolactate synthase 94.7 0.71 1.5E-05 46.7 13.7 116 86-213 42-165 (563)
109 COG0028 IlvB Thiamine pyrophos 94.6 0.59 1.3E-05 47.3 12.9 176 77-266 33-230 (550)
110 COG4032 Predicted thiamine-pyr 94.6 0.053 1.1E-06 44.7 4.3 109 93-210 49-163 (172)
111 PRK06154 hypothetical protein; 94.4 1.2 2.6E-05 45.2 14.6 154 38-214 18-179 (565)
112 cd02009 TPP_SHCHC_synthase Thi 94.3 0.7 1.5E-05 39.3 10.9 112 84-206 40-170 (175)
113 cd07038 TPP_PYR_PDC_IPDC_like 94.2 1.3 2.7E-05 37.4 12.1 111 86-209 36-161 (162)
114 TIGR03394 indol_phenyl_DC indo 94.1 1.1 2.4E-05 45.2 13.5 150 47-214 3-168 (535)
115 cd02014 TPP_POX Thiamine pyrop 93.8 2 4.4E-05 36.5 12.9 116 79-206 36-168 (178)
116 TIGR03254 oxalate_oxc oxalyl-C 93.7 0.88 1.9E-05 45.9 12.0 117 86-214 41-167 (554)
117 cd02010 TPP_ALS Thiamine pyrop 93.4 2.9 6.3E-05 35.6 13.2 111 85-206 38-165 (177)
118 TIGR03393 indolpyr_decarb indo 93.3 2.2 4.8E-05 42.9 14.2 117 87-215 41-170 (539)
119 PRK06276 acetolactate synthase 93.3 0.93 2E-05 46.1 11.6 116 86-213 39-162 (586)
120 PRK08273 thiamine pyrophosphat 93.3 1.5 3.2E-05 44.8 13.0 153 47-214 6-167 (597)
121 PRK06882 acetolactate synthase 93.2 1.2 2.7E-05 45.0 12.3 114 87-212 44-165 (574)
122 TIGR02720 pyruv_oxi_spxB pyruv 93.2 2.4 5.2E-05 43.1 14.3 116 86-213 39-161 (575)
123 TIGR02177 PorB_KorB 2-oxoacid: 93.0 2.8 6E-05 38.9 13.2 143 42-206 12-181 (287)
124 cd02004 TPP_BZL_OCoD_HPCL Thia 93.0 1.2 2.5E-05 37.7 10.1 112 85-206 38-167 (172)
125 PRK07449 2-succinyl-5-enolpyru 92.9 1.4 2.9E-05 44.7 12.0 153 44-212 9-175 (568)
126 PRK06546 pyruvate dehydrogenas 92.8 2.5 5.4E-05 43.0 13.8 116 86-213 42-164 (578)
127 PRK11866 2-oxoacid ferredoxin 92.5 3.6 7.7E-05 38.1 13.1 146 42-206 18-187 (279)
128 PRK11864 2-ketoisovalerate fer 92.2 2.7 5.9E-05 39.2 12.1 37 170-206 166-202 (300)
129 PF09363 XFP_C: XFP C-terminal 92.0 0.9 1.9E-05 39.8 8.0 64 238-301 34-110 (203)
130 cd03376 TPP_PFOR_porB_like Thi 91.9 6.5 0.00014 35.3 13.9 26 181-206 170-195 (235)
131 cd02013 TPP_Xsc_like Thiamine 91.5 2.2 4.8E-05 37.0 10.1 111 85-206 43-174 (196)
132 cd03375 TPP_OGFOR Thiamine pyr 91.3 8.9 0.00019 33.2 13.7 25 182-206 155-179 (193)
133 PRK11865 pyruvate ferredoxin o 91.2 8.7 0.00019 35.9 14.3 37 170-206 170-206 (299)
134 TIGR03846 sulfopy_beta sulfopy 90.8 9.3 0.0002 32.8 13.2 144 43-206 1-151 (181)
135 TIGR00173 menD 2-succinyl-5-en 90.7 2.9 6.3E-05 40.9 11.2 115 87-212 40-167 (432)
136 cd02003 TPP_IolD Thiamine pyro 90.7 8.9 0.00019 33.4 13.3 35 171-206 145-179 (205)
137 cd02018 TPP_PFOR Thiamine pyro 90.6 11 0.00023 33.9 13.9 36 171-206 160-198 (237)
138 cd02006 TPP_Gcl Thiamine pyrop 90.0 6.2 0.00013 34.3 11.7 145 46-206 13-189 (202)
139 PRK11869 2-oxoacid ferredoxin 89.9 4.5 9.7E-05 37.4 11.1 145 41-206 18-188 (280)
140 cd02015 TPP_AHAS Thiamine pyro 89.6 5.2 0.00011 34.2 10.7 111 85-206 40-169 (186)
141 PRK09628 oorB 2-oxoglutarate-a 89.4 17 0.00037 33.5 14.5 142 44-206 29-196 (277)
142 PRK11867 2-oxoglutarate ferred 88.7 15 0.00032 34.1 13.6 143 42-206 28-197 (286)
143 cd02002 TPP_BFDC Thiamine pyro 88.7 11 0.00024 31.7 12.0 35 171-206 140-174 (178)
144 PRK08155 acetolactate synthase 88.2 5.9 0.00013 40.1 11.6 111 85-206 409-538 (564)
145 PRK06457 pyruvate dehydrogenas 87.3 11 0.00023 38.1 12.8 111 85-206 386-514 (549)
146 cd03371 TPP_PpyrDC Thiamine py 86.5 20 0.00044 30.8 14.0 111 85-206 41-158 (188)
147 cd03033 ArsC_15kD Arsenate Red 86.4 2.1 4.6E-05 33.9 5.8 49 241-291 2-50 (113)
148 PRK06048 acetolactate synthase 86.2 10 0.00022 38.4 12.0 111 85-206 404-533 (561)
149 PRK08617 acetolactate synthase 86.0 9.3 0.0002 38.5 11.6 143 46-206 370-531 (552)
150 cd00568 TPP_enzymes Thiamine p 85.9 8.3 0.00018 31.8 9.5 35 171-206 130-164 (168)
151 cd03372 TPP_ComE Thiamine pyro 85.3 22 0.00048 30.2 12.9 109 85-206 35-150 (179)
152 KOG1185 Thiamine pyrophosphate 84.8 45 0.00097 33.3 14.9 118 81-211 48-173 (571)
153 cd01481 vWA_collagen_alpha3-VI 84.1 2.9 6.4E-05 35.2 6.0 55 241-298 110-164 (165)
154 PF02775 TPP_enzyme_C: Thiamin 84.1 15 0.00033 30.0 10.2 111 85-206 18-151 (153)
155 cd02008 TPP_IOR_alpha Thiamine 84.0 14 0.0003 31.3 10.2 100 98-206 56-172 (178)
156 COG3961 Pyruvate decarboxylase 83.2 6.3 0.00014 39.3 8.5 154 46-215 6-174 (557)
157 PLN02980 2-oxoglutarate decarb 82.8 15 0.00032 42.4 12.4 151 44-210 301-466 (1655)
158 TIGR03254 oxalate_oxc oxalyl-C 82.7 20 0.00043 36.2 12.3 147 46-206 371-533 (554)
159 PRK08978 acetolactate synthase 82.7 18 0.00039 36.4 11.9 111 85-206 391-520 (548)
160 TIGR00118 acolac_lg acetolacta 82.2 12 0.00025 37.9 10.4 146 45-206 367-531 (558)
161 PRK06882 acetolactate synthase 82.0 20 0.00043 36.3 12.0 145 46-206 377-541 (574)
162 PRK06466 acetolactate synthase 81.8 22 0.00048 36.1 12.3 111 85-206 413-543 (574)
163 COG1393 ArsC Arsenate reductas 81.6 5.5 0.00012 31.8 6.2 49 241-291 3-51 (117)
164 PRK06163 hypothetical protein; 81.5 36 0.00078 29.8 13.6 146 43-206 15-168 (202)
165 PF03960 ArsC: ArsC family; I 81.0 2.8 6.1E-05 32.7 4.4 41 250-291 6-46 (110)
166 cd03035 ArsC_Yffb Arsenate Red 81.0 4 8.7E-05 31.8 5.2 42 249-291 8-49 (105)
167 PRK09107 acetolactate synthase 80.9 27 0.00059 35.7 12.6 111 85-206 420-549 (595)
168 PRK08266 hypothetical protein; 80.9 58 0.0013 32.7 14.8 111 85-206 392-520 (542)
169 PRK06276 acetolactate synthase 80.8 34 0.00074 34.8 13.3 111 85-206 409-538 (586)
170 TIGR03336 IOR_alpha indolepyru 80.8 19 0.00041 36.8 11.4 114 85-207 395-526 (595)
171 cd00860 ThrRS_anticodon ThrRS 80.7 8.2 0.00018 28.3 6.7 58 240-299 3-61 (91)
172 TIGR03297 Ppyr-DeCO2ase phosph 80.0 58 0.0013 31.2 14.9 112 85-207 214-332 (361)
173 PRK05858 hypothetical protein; 80.0 18 0.00039 36.4 10.8 111 85-206 397-525 (542)
174 PRK05778 2-oxoglutarate ferred 79.9 15 0.00033 34.3 9.5 144 40-206 27-198 (301)
175 PRK07710 acetolactate synthase 79.6 22 0.00047 36.1 11.4 111 85-206 414-543 (571)
176 PRK08322 acetolactate synthase 79.5 28 0.0006 35.0 12.0 111 85-206 396-523 (547)
177 cd02005 TPP_PDC_IPDC Thiamine 78.9 30 0.00066 29.5 10.5 145 46-206 7-169 (183)
178 PRK09259 putative oxalyl-CoA d 78.9 28 0.0006 35.3 11.9 146 46-206 378-541 (569)
179 PRK08527 acetolactate synthase 78.8 24 0.00051 35.7 11.3 111 85-206 404-533 (563)
180 PRK06965 acetolactate synthase 78.7 30 0.00065 35.2 12.1 111 85-206 427-557 (587)
181 cd02012 TPP_TK Thiamine pyroph 78.5 26 0.00057 31.5 10.5 99 98-208 110-224 (255)
182 cd03028 GRX_PICOT_like Glutare 77.5 4.4 9.6E-05 30.4 4.3 38 237-274 6-47 (90)
183 TIGR00365 monothiol glutaredox 77.3 8.4 0.00018 29.4 5.9 37 237-273 10-50 (97)
184 TIGR02418 acolac_catab acetola 77.1 35 0.00076 34.3 11.9 146 45-206 363-525 (539)
185 cd02007 TPP_DXS Thiamine pyrop 76.8 46 0.00099 28.8 11.1 26 182-207 161-186 (195)
186 PRK08273 thiamine pyrophosphat 76.5 39 0.00085 34.5 12.2 35 171-206 507-541 (597)
187 PRK10853 putative reductase; P 76.5 5.6 0.00012 31.8 4.8 40 250-290 10-49 (118)
188 COG3962 Acetolactate synthase 75.8 23 0.0005 35.2 9.6 214 37-267 4-260 (617)
189 PRK08979 acetolactate synthase 75.6 39 0.00085 34.3 11.9 111 85-206 411-541 (572)
190 PRK08611 pyruvate oxidase; Pro 75.1 53 0.0012 33.3 12.7 111 85-206 398-525 (576)
191 PRK06154 hypothetical protein; 74.8 61 0.0013 32.9 13.0 111 85-206 421-550 (565)
192 TIGR00014 arsC arsenate reduct 74.7 7.7 0.00017 30.6 5.2 42 249-291 8-49 (114)
193 CHL00099 ilvB acetohydroxyacid 74.4 70 0.0015 32.6 13.4 111 85-206 420-550 (585)
194 cd03034 ArsC_ArsC Arsenate Red 74.3 8 0.00017 30.4 5.2 42 249-291 8-49 (112)
195 cd00859 HisRS_anticodon HisRS 74.1 12 0.00027 26.8 6.0 55 240-297 3-59 (91)
196 TIGR01616 nitro_assoc nitrogen 74.1 9.5 0.00021 30.9 5.7 41 249-290 10-50 (126)
197 PRK06725 acetolactate synthase 73.9 40 0.00086 34.3 11.4 111 85-206 412-540 (570)
198 PLN02470 acetolactate synthase 73.8 49 0.0011 33.7 12.1 111 85-206 416-552 (585)
199 cd00858 GlyRS_anticodon GlyRS 73.8 13 0.00029 29.4 6.4 57 239-299 27-87 (121)
200 cd03027 GRX_DEP Glutaredoxin ( 73.5 5.9 0.00013 28.2 3.9 63 240-304 2-65 (73)
201 COG0075 Serine-pyruvate aminot 73.5 16 0.00035 35.3 8.0 55 233-290 75-129 (383)
202 PRK07418 acetolactate synthase 73.4 50 0.0011 33.8 12.1 111 85-206 424-554 (616)
203 COG0028 IlvB Thiamine pyrophos 73.3 25 0.00054 35.7 9.7 146 45-206 363-526 (550)
204 PRK10026 arsenate reductase; P 73.3 12 0.00026 31.0 6.1 43 248-291 10-52 (141)
205 KOG1184 Thiamine pyrophosphate 73.1 17 0.00036 36.4 8.0 149 46-213 6-172 (561)
206 PRK09124 pyruvate dehydrogenas 72.4 59 0.0013 32.9 12.3 111 85-206 398-525 (574)
207 PRK06112 acetolactate synthase 71.6 57 0.0012 33.1 12.0 99 97-206 441-555 (578)
208 PF03129 HGTP_anticodon: Antic 71.4 12 0.00026 27.8 5.4 56 240-298 1-61 (94)
209 TIGR01504 glyox_carbo_lig glyo 71.3 18 0.0004 36.8 8.3 150 40-206 369-550 (588)
210 PRK06546 pyruvate dehydrogenas 70.8 41 0.0009 34.2 10.7 109 85-206 398-525 (578)
211 PRK07092 benzoylformate decarb 70.5 72 0.0016 31.9 12.3 111 85-206 398-525 (530)
212 PRK13344 spxA transcriptional 69.9 15 0.00032 29.9 5.9 42 248-290 8-49 (132)
213 COG0426 FpaA Uncharacterized f 69.8 10 0.00022 36.6 5.7 53 240-295 248-303 (388)
214 cd01080 NAD_bind_m-THF_DH_Cycl 69.0 15 0.00032 31.3 5.9 51 237-295 43-93 (168)
215 cd03036 ArsC_like Arsenate Red 68.8 11 0.00025 29.4 4.9 43 248-291 7-49 (111)
216 PRK07449 2-succinyl-5-enolpyru 68.5 34 0.00073 34.6 9.5 98 98-206 430-544 (568)
217 PRK07586 hypothetical protein; 67.7 1.2E+02 0.0025 30.2 13.1 35 171-206 476-510 (514)
218 cd02977 ArsC_family Arsenate R 66.9 17 0.00038 27.8 5.6 43 248-291 7-49 (105)
219 PF10740 DUF2529: Protein of u 66.4 29 0.00064 29.6 7.1 85 187-271 24-115 (172)
220 PRK11269 glyoxylate carboligas 66.0 72 0.0016 32.5 11.4 111 85-206 409-551 (591)
221 PRK08199 thiamine pyrophosphat 66.0 91 0.002 31.5 12.0 35 171-206 499-533 (557)
222 PRK12559 transcriptional regul 65.6 22 0.00048 28.8 6.1 41 249-290 9-49 (131)
223 cd03032 ArsC_Spx Arsenate Redu 65.1 20 0.00042 28.2 5.6 42 248-290 8-49 (115)
224 PRK07789 acetolactate synthase 64.8 60 0.0013 33.2 10.6 111 85-206 437-571 (612)
225 cd00738 HGTP_anticodon HGTP an 64.2 25 0.00055 25.7 5.9 58 240-299 3-64 (94)
226 COG0680 HyaD Ni,Fe-hydrogenase 63.7 23 0.00049 29.9 6.0 56 239-298 2-64 (160)
227 cd06062 H2MP_MemB-H2up Endopep 63.5 29 0.00062 28.5 6.6 55 241-299 1-62 (146)
228 PF01565 FAD_binding_4: FAD bi 63.1 44 0.00096 26.6 7.6 77 180-258 3-82 (139)
229 PRK07979 acetolactate synthase 63.1 1.2E+02 0.0027 30.6 12.4 111 85-206 411-543 (574)
230 cd00861 ProRS_anticodon_short 63.0 31 0.00067 25.4 6.2 58 240-299 3-64 (94)
231 PF03358 FMN_red: NADPH-depend 63.0 13 0.00029 30.2 4.5 56 247-302 14-83 (152)
232 PRK07524 hypothetical protein; 63.0 79 0.0017 31.7 10.9 111 85-206 396-524 (535)
233 TIGR03457 sulphoacet_xsc sulfo 63.0 87 0.0019 31.8 11.3 109 85-206 420-552 (579)
234 TIGR01617 arsC_related transcr 61.7 18 0.00039 28.5 4.9 43 248-291 7-49 (117)
235 COG0543 UbiB 2-polyprenylpheno 61.7 41 0.00089 30.3 7.8 72 229-301 97-173 (252)
236 COG4231 Indolepyruvate ferredo 61.2 32 0.0007 35.2 7.5 107 97-211 432-554 (640)
237 PRK12474 hypothetical protein; 60.9 1.5E+02 0.0032 29.7 12.3 145 46-206 346-514 (518)
238 cd03418 GRX_GRXb_1_3_like Glut 60.3 17 0.00036 25.6 4.1 58 241-303 2-64 (75)
239 PF00258 Flavodoxin_1: Flavodo 60.0 15 0.00033 29.5 4.3 46 246-296 7-52 (143)
240 PRK07064 hypothetical protein; 59.3 66 0.0014 32.2 9.6 111 85-206 396-523 (544)
241 PRK10264 hydrogenase 1 maturat 58.7 33 0.00071 29.9 6.4 57 239-299 4-67 (195)
242 PRK10329 glutaredoxin-like pro 58.5 53 0.0011 24.1 6.6 59 241-304 3-64 (81)
243 PRK06456 acetolactate synthase 58.1 90 0.002 31.6 10.4 111 85-206 411-540 (572)
244 cd06063 H2MP_Cyano-H2up This g 57.9 35 0.00075 28.0 6.1 55 241-299 1-61 (146)
245 PRK05899 transketolase; Review 57.8 1.4E+02 0.003 30.8 11.7 41 168-209 203-246 (624)
246 TIGR02189 GlrX-like_plant Glut 57.2 53 0.0011 25.1 6.7 63 238-303 7-74 (99)
247 TIGR02720 pyruv_oxi_spxB pyruv 57.1 2E+02 0.0044 29.1 12.7 35 171-206 491-527 (575)
248 PRK01655 spxA transcriptional 56.4 29 0.00062 28.1 5.3 42 248-290 8-49 (131)
249 PRK03767 NAD(P)H:quinone oxido 56.2 60 0.0013 28.0 7.7 54 246-301 12-81 (200)
250 PF00456 Transketolase_N: Tran 56.0 61 0.0013 30.7 8.1 46 168-214 196-246 (332)
251 KOG2862 Alanine-glyoxylate ami 56.0 51 0.0011 31.2 7.3 64 234-300 88-152 (385)
252 PRK07525 sulfoacetaldehyde ace 55.6 1.3E+02 0.0029 30.6 11.1 111 85-206 425-557 (588)
253 cd06070 H2MP_like-2 Putative [ 55.3 36 0.00079 27.7 5.8 51 243-299 2-56 (140)
254 PRK10466 hybD hydrogenase 2 ma 53.5 64 0.0014 27.1 7.1 56 240-299 2-64 (164)
255 PLN02790 transketolase 53.0 1.8E+02 0.0038 30.3 11.6 80 123-211 152-238 (654)
256 cd06068 H2MP_like-1 Putative [ 52.6 45 0.00097 27.3 6.0 54 243-299 2-61 (144)
257 PRK10638 glutaredoxin 3; Provi 52.3 25 0.00054 25.6 4.0 34 240-274 3-36 (83)
258 COG2089 SpsE Sialic acid synth 52.2 45 0.00099 31.5 6.4 65 237-302 146-217 (347)
259 cd00518 H2MP Hydrogenase speci 51.7 53 0.0011 26.6 6.2 53 243-299 2-60 (139)
260 KOG4044 Mitochondrial associat 50.0 1E+02 0.0022 26.4 7.6 104 191-298 42-164 (201)
261 PRK05444 1-deoxy-D-xylulose-5- 49.1 1.2E+02 0.0025 31.0 9.5 162 33-209 43-240 (580)
262 TIGR00072 hydrog_prot hydrogen 49.0 66 0.0014 26.2 6.4 53 243-299 2-61 (145)
263 cd01482 vWA_collagen_alphaI-XI 48.8 46 0.00099 27.5 5.5 55 241-298 107-163 (164)
264 PRK11544 hycI hydrogenase 3 ma 48.0 47 0.001 27.7 5.4 55 240-298 2-63 (156)
265 PLN02409 serine--glyoxylate am 47.8 66 0.0014 30.9 7.2 50 236-288 82-131 (401)
266 PRK08327 acetolactate synthase 47.8 85 0.0018 31.8 8.2 149 39-206 384-562 (569)
267 COG0695 GrxC Glutaredoxin and 47.7 55 0.0012 23.9 5.2 58 241-299 3-62 (80)
268 TIGR03393 indolpyr_decarb indo 47.2 2.1E+02 0.0045 28.8 10.9 27 180-206 496-522 (539)
269 TIGR00142 hycI hydrogenase mat 46.9 45 0.00099 27.3 5.1 54 241-298 1-62 (146)
270 cd05125 Mth938_2P1-like Mth938 46.7 16 0.00034 29.1 2.2 39 236-274 52-91 (114)
271 PF03853 YjeF_N: YjeF-related 46.7 70 0.0015 26.9 6.4 51 241-291 29-81 (169)
272 PF04430 DUF498: Protein of un 46.6 15 0.00033 28.7 2.1 38 237-274 52-90 (110)
273 PRK06756 flavodoxin; Provision 46.5 68 0.0015 26.0 6.1 29 246-274 12-40 (148)
274 cd01452 VWA_26S_proteasome_sub 46.1 93 0.002 26.9 7.1 58 241-299 111-175 (187)
275 PLN02573 pyruvate decarboxylas 45.8 1.9E+02 0.0041 29.4 10.5 99 98-206 433-547 (578)
276 COG1104 NifS Cysteine sulfinat 45.7 42 0.00092 32.5 5.3 54 243-296 94-147 (386)
277 PF12500 TRSP: TRSP domain C t 45.6 37 0.0008 28.6 4.4 33 237-269 56-88 (155)
278 CHL00201 syh histidine-tRNA sy 45.1 61 0.0013 31.7 6.5 58 239-299 326-385 (430)
279 PRK10824 glutaredoxin-4; Provi 44.8 34 0.00073 27.2 3.9 38 237-274 13-54 (115)
280 cd01475 vWA_Matrilin VWA_Matri 44.2 52 0.0011 28.8 5.4 55 241-298 112-168 (224)
281 TIGR00130 frhD coenzyme F420-r 43.6 51 0.0011 27.3 5.0 60 239-299 3-70 (153)
282 TIGR02181 GRX_bact Glutaredoxi 43.0 37 0.0008 24.2 3.6 53 248-304 7-63 (79)
283 PRK08114 cystathionine beta-ly 42.8 57 0.0012 31.6 5.9 22 278-299 164-187 (395)
284 TIGR02194 GlrX_NrdH Glutaredox 42.8 52 0.0011 23.1 4.3 26 249-274 8-33 (72)
285 PRK09739 hypothetical protein; 42.6 93 0.002 26.7 6.7 52 250-301 20-91 (199)
286 cd01472 vWA_collagen von Wille 42.3 61 0.0013 26.6 5.3 55 241-298 107-163 (164)
287 cd03416 CbiX_SirB_N Sirohydroc 42.2 1.4E+02 0.0031 22.3 7.0 56 241-296 2-64 (101)
288 PRK06703 flavodoxin; Provision 42.2 44 0.00094 27.3 4.3 29 247-275 13-41 (151)
289 PRK05569 flavodoxin; Provision 42.1 76 0.0017 25.3 5.8 30 246-275 12-41 (141)
290 COG1071 AcoA Pyruvate/2-oxoglu 41.8 1.7E+02 0.0037 28.1 8.6 35 172-207 219-257 (358)
291 COG2820 Udp Uridine phosphoryl 41.3 60 0.0013 29.4 5.2 75 180-275 19-93 (248)
292 cd01474 vWA_ATR ATR (Anthrax T 41.3 48 0.0011 27.9 4.6 42 253-297 123-164 (185)
293 TIGR03181 PDH_E1_alph_x pyruva 41.1 1.5E+02 0.0032 28.1 8.3 32 175-207 207-242 (341)
294 cd01453 vWA_transcription_fact 41.0 75 0.0016 27.0 5.8 42 253-298 125-167 (183)
295 TIGR02190 GlrX-dom Glutaredoxi 40.9 50 0.0011 23.8 4.0 38 236-274 5-42 (79)
296 cd05569 PTS_IIB_fructose PTS_I 40.4 1.4E+02 0.003 22.7 6.6 53 241-297 2-61 (96)
297 cd03409 Chelatase_Class_II Cla 40.0 1.3E+02 0.0029 22.2 6.5 56 241-296 2-65 (101)
298 PF00070 Pyr_redox: Pyridine n 39.9 42 0.00091 24.1 3.5 31 241-274 2-32 (80)
299 TIGR03569 NeuB_NnaB N-acetylne 39.7 1.3E+02 0.0027 28.6 7.5 64 238-302 133-205 (329)
300 COG0655 WrbA Multimeric flavod 39.1 1.1E+02 0.0024 26.5 6.6 55 246-300 13-86 (207)
301 PRK00170 azoreductase; Reviewe 38.8 1.5E+02 0.0032 25.2 7.4 52 250-301 19-98 (201)
302 PRK05568 flavodoxin; Provision 38.2 75 0.0016 25.4 5.1 30 247-276 13-42 (142)
303 TIGR02853 spore_dpaA dipicolin 38.2 84 0.0018 29.0 6.0 55 237-294 150-214 (287)
304 TIGR03249 KdgD 5-dehydro-4-deo 37.7 90 0.0019 28.8 6.1 35 264-299 130-164 (296)
305 cd03412 CbiK_N Anaerobic cobal 37.6 98 0.0021 24.8 5.6 55 241-296 3-76 (127)
306 PTZ00089 transketolase; Provis 37.4 4.6E+02 0.01 27.3 11.8 79 123-211 163-249 (661)
307 cd00248 Mth938-like Mth938-lik 36.8 24 0.00051 27.7 1.8 35 239-273 53-88 (109)
308 PRK07282 acetolactate synthase 36.5 2.5E+02 0.0054 28.4 9.6 110 85-206 408-536 (566)
309 PRK10537 voltage-gated potassi 36.4 1E+02 0.0022 29.9 6.4 32 238-272 240-271 (393)
310 PRK10569 NAD(P)H-dependent FMN 36.2 1.1E+02 0.0025 26.3 6.2 53 250-302 17-79 (191)
311 PLN02463 lycopene beta cyclase 36.2 59 0.0013 32.0 4.9 36 239-277 29-64 (447)
312 TIGR01753 flav_short flavodoxi 36.0 1.1E+02 0.0024 24.0 5.8 30 247-276 10-39 (140)
313 PRK07200 aspartate/ornithine c 35.8 1.2E+02 0.0026 29.6 6.8 44 237-280 186-234 (395)
314 PF12683 DUF3798: Protein of u 35.7 3.3E+02 0.0072 25.1 9.2 136 48-201 77-223 (275)
315 PRK11200 grxA glutaredoxin 1; 35.4 1.1E+02 0.0024 22.1 5.2 61 241-303 3-71 (85)
316 COG0062 Uncharacterized conser 35.2 1.3E+02 0.0029 26.4 6.4 47 241-287 53-99 (203)
317 COG4981 Enoyl reductase domain 35.1 71 0.0015 32.4 5.1 90 87-192 127-230 (717)
318 PF02441 Flavoprotein: Flavopr 35.1 47 0.001 26.5 3.3 35 240-274 2-37 (129)
319 PRK12770 putative glutamate sy 34.9 54 0.0012 30.8 4.3 34 237-273 17-50 (352)
320 TIGR01142 purT phosphoribosylg 34.8 1.1E+02 0.0024 28.9 6.4 55 240-297 1-69 (380)
321 cd05560 Xcc1710_like Xcc1710_l 34.6 29 0.00062 27.2 2.0 36 238-273 52-88 (109)
322 TIGR00442 hisS histidyl-tRNA s 34.5 1.1E+02 0.0024 29.3 6.4 57 239-298 323-381 (397)
323 TIGR00106 uncharacterized prot 34.4 1.1E+02 0.0025 23.4 5.2 49 240-288 4-56 (97)
324 PF03033 Glyco_transf_28: Glyc 34.3 72 0.0016 25.0 4.4 34 241-274 1-36 (139)
325 PRK05613 O-acetylhomoserine am 34.2 71 0.0015 31.4 5.1 21 278-298 172-192 (437)
326 PF03102 NeuB: NeuB family; I 34.1 1.5E+02 0.0033 26.7 6.8 61 241-301 115-182 (241)
327 PRK07308 flavodoxin; Validated 34.0 1.3E+02 0.0029 24.2 6.0 31 246-276 12-42 (146)
328 cd05126 Mth938 Mth938 domain. 33.9 21 0.00046 28.4 1.1 37 235-271 55-93 (117)
329 cd03029 GRX_hybridPRX5 Glutare 33.9 1.5E+02 0.0033 20.5 5.6 60 240-302 2-62 (72)
330 PHA03050 glutaredoxin; Provisi 33.5 1.7E+02 0.0036 22.8 6.2 36 238-274 12-50 (108)
331 TIGR01718 Uridine-psphlse urid 33.5 1.7E+02 0.0036 26.3 7.0 76 180-276 14-89 (245)
332 PRK00037 hisS histidyl-tRNA sy 33.2 1.2E+02 0.0026 29.2 6.4 57 239-298 319-377 (412)
333 PF14258 DUF4350: Domain of un 33.1 1.2E+02 0.0026 21.1 4.9 16 281-296 54-69 (70)
334 PRK12753 transketolase; Review 32.9 4.7E+02 0.01 27.3 11.0 79 123-211 161-246 (663)
335 cd03415 CbiX_CbiC Archaeal sir 32.8 2.1E+02 0.0045 23.0 6.8 56 241-296 3-64 (125)
336 TIGR01316 gltA glutamate synth 32.8 60 0.0013 31.8 4.3 34 237-273 132-165 (449)
337 TIGR03567 FMN_reduc_SsuE FMN r 32.7 1.9E+02 0.0042 24.1 6.9 54 249-302 15-78 (171)
338 PF00975 Thioesterase: Thioest 32.7 80 0.0017 27.0 4.7 29 240-268 67-95 (229)
339 PF07991 IlvN: Acetohydroxy ac 32.5 53 0.0012 27.9 3.3 34 237-273 3-36 (165)
340 cd01521 RHOD_PspE2 Member of t 32.5 62 0.0013 24.7 3.6 35 236-270 62-96 (110)
341 PRK09754 phenylpropionate diox 32.5 88 0.0019 29.9 5.4 34 237-273 143-176 (396)
342 COG1504 Uncharacterized conser 32.2 55 0.0012 26.0 3.1 38 235-274 58-97 (121)
343 cd05212 NAD_bind_m-THF_DH_Cycl 32.1 1E+02 0.0022 25.3 4.9 51 237-295 27-77 (140)
344 cd01465 vWA_subgroup VWA subgr 31.9 2.1E+02 0.0045 23.1 7.0 46 251-298 116-162 (170)
345 PLN02980 2-oxoglutarate decarb 31.6 2.6E+02 0.0057 32.5 9.6 29 178-206 856-884 (1655)
346 PTZ00062 glutaredoxin; Provisi 31.1 1.5E+02 0.0033 26.0 6.1 36 238-273 112-151 (204)
347 TIGR01292 TRX_reduct thioredox 31.1 66 0.0014 28.7 4.1 30 240-272 2-31 (300)
348 COG3380 Predicted NAD/FAD-depe 30.7 69 0.0015 29.8 4.0 30 240-272 3-32 (331)
349 PRK03092 ribose-phosphate pyro 30.6 4.4E+02 0.0095 24.5 9.5 65 237-301 35-118 (304)
350 cd00862 ProRS_anticodon_zinc P 30.6 1.8E+02 0.0038 25.3 6.5 57 240-297 12-75 (202)
351 PRK12770 putative glutamate sy 30.4 1.2E+02 0.0026 28.4 5.8 35 238-275 172-207 (352)
352 PRK08306 dipicolinate synthase 30.3 1.2E+02 0.0026 28.1 5.6 35 237-274 151-185 (296)
353 PRK04930 glutathione-regulated 30.1 2.1E+02 0.0045 24.6 6.7 49 253-301 22-73 (184)
354 PRK12810 gltD glutamate syntha 30.0 70 0.0015 31.5 4.3 34 237-273 142-175 (471)
355 cd01451 vWA_Magnesium_chelatas 30.0 1.6E+02 0.0034 24.6 5.9 45 254-299 122-167 (178)
356 PF11823 DUF3343: Protein of u 29.9 63 0.0014 23.1 3.0 47 243-290 5-62 (73)
357 TIGR02326 transamin_PhnW 2-ami 29.8 2.3E+02 0.0051 26.3 7.7 20 279-298 147-166 (363)
358 PLN02530 histidine-tRNA ligase 29.2 1.3E+02 0.0027 30.1 6.0 57 239-298 402-460 (487)
359 PF02254 TrkA_N: TrkA-N domain 29.2 83 0.0018 24.0 3.8 30 241-273 1-30 (116)
360 COG4635 HemG Flavodoxin [Energ 29.0 66 0.0014 27.4 3.3 33 247-279 12-44 (175)
361 PRK07199 phosphoribosylpyropho 28.9 4.1E+02 0.0088 24.7 9.0 64 237-300 48-128 (301)
362 cd03414 CbiX_SirB_C Sirohydroc 28.8 2.3E+02 0.0049 21.8 6.3 56 241-296 3-65 (117)
363 PRK12315 1-deoxy-D-xylulose-5- 28.8 5.6E+02 0.012 26.2 10.7 110 88-209 109-241 (581)
364 PRK13984 putative oxidoreducta 28.8 71 0.0015 32.6 4.2 35 236-273 281-315 (604)
365 PRK11104 hemG protoporphyrinog 28.8 2E+02 0.0043 24.3 6.4 29 247-276 12-40 (177)
366 PRK13403 ketol-acid reductoiso 28.7 1.9E+02 0.0041 27.6 6.6 33 237-272 15-47 (335)
367 PF00701 DHDPS: Dihydrodipicol 28.4 1.7E+02 0.0037 26.6 6.4 32 250-281 82-113 (289)
368 cd01480 vWA_collagen_alpha_1-V 28.4 1.2E+02 0.0026 25.5 5.0 54 241-297 113-170 (186)
369 cd06067 H2MP_MemB-H2evol Endop 28.4 2E+02 0.0044 23.1 6.1 53 243-299 2-61 (136)
370 KOG4166 Thiamine pyrophosphate 28.3 1.1E+02 0.0024 30.2 5.1 112 90-212 133-252 (675)
371 PF00676 E1_dh: Dehydrogenase 28.1 3.2E+02 0.007 25.3 8.1 99 99-206 107-220 (300)
372 PF00731 AIRC: AIR carboxylase 28.1 1.9E+02 0.0041 24.1 5.9 48 240-289 2-50 (150)
373 COG0124 HisS Histidyl-tRNA syn 28.0 2.3E+02 0.005 27.9 7.4 59 237-298 334-394 (429)
374 cd00951 KDGDH 5-dehydro-4-deox 28.0 1.5E+02 0.0032 27.2 5.9 61 238-299 94-159 (289)
375 PLN02948 phosphoribosylaminoim 27.7 1.9E+02 0.0041 29.6 7.0 59 237-299 21-92 (577)
376 PRK12754 transketolase; Review 27.6 7E+02 0.015 26.1 11.2 78 124-211 162-246 (663)
377 COG0026 PurK Phosphoribosylami 27.5 2E+02 0.0043 27.8 6.6 56 239-298 2-70 (375)
378 cd05013 SIS_RpiR RpiR-like pro 27.5 1E+02 0.0022 23.9 4.1 35 236-270 11-45 (139)
379 PRK08105 flavodoxin; Provision 27.4 69 0.0015 26.4 3.2 35 243-277 5-43 (149)
380 PRK09590 celB cellobiose phosp 27.2 1.8E+02 0.0039 22.6 5.3 48 239-288 51-101 (104)
381 PRK05335 tRNA (uracil-5-)-meth 27.1 88 0.0019 30.9 4.3 33 239-274 3-35 (436)
382 PRK12831 putative oxidoreducta 27.1 81 0.0018 31.1 4.2 33 237-272 139-171 (464)
383 cd01476 VWA_integrin_invertebr 27.1 97 0.0021 25.2 4.1 52 241-294 107-161 (163)
384 PRK05967 cystathionine beta-ly 26.8 1.4E+02 0.003 29.0 5.6 26 276-301 164-189 (395)
385 PRK14175 bifunctional 5,10-met 26.7 1.7E+02 0.0036 27.2 5.8 47 237-291 157-203 (286)
386 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.7 1.1E+02 0.0025 23.6 4.3 32 240-271 1-33 (126)
387 PRK09004 FMN-binding protein M 26.7 1.9E+02 0.004 23.7 5.7 49 243-300 5-57 (146)
388 PRK14694 putative mercuric red 26.7 1.3E+02 0.0029 29.5 5.6 37 238-277 178-214 (468)
389 PRK12831 putative oxidoreducta 26.7 1.8E+02 0.0039 28.7 6.5 41 236-279 279-319 (464)
390 cd00006 PTS_IIA_man PTS_IIA, P 26.6 2.3E+02 0.005 22.2 6.0 35 240-274 2-36 (122)
391 TIGR01678 FAD_lactone_ox sugar 26.4 2.3E+02 0.005 27.9 7.1 85 175-266 13-100 (438)
392 PRK02812 ribose-phosphate pyro 26.4 5.6E+02 0.012 24.2 11.9 115 169-301 12-150 (330)
393 TIGR03586 PseI pseudaminic aci 26.3 2.8E+02 0.006 26.2 7.4 41 241-281 136-178 (327)
394 PF00462 Glutaredoxin: Glutare 26.2 1.3E+02 0.0028 20.0 4.0 28 248-275 7-34 (60)
395 TIGR01755 flav_wrbA NAD(P)H:qu 26.1 2.6E+02 0.0057 24.0 6.8 30 246-275 11-41 (197)
396 COG1665 Predicted nucleotidylt 26.1 1.5E+02 0.0034 27.4 5.3 42 237-287 137-178 (315)
397 TIGR01465 cobM_cbiF precorrin- 26.1 74 0.0016 27.8 3.4 30 177-206 45-76 (229)
398 PF12328 Rpp20: Rpp20 subunit 26.0 1.2E+02 0.0027 25.0 4.4 31 238-268 61-92 (144)
399 PF01380 SIS: SIS domain SIS d 25.8 98 0.0021 23.9 3.8 34 237-270 4-37 (131)
400 PRK12779 putative bifunctional 25.7 82 0.0018 34.3 4.2 34 237-273 305-338 (944)
401 PRK03620 5-dehydro-4-deoxygluc 25.6 1.7E+02 0.0037 27.1 5.8 36 263-299 131-166 (303)
402 PRK01438 murD UDP-N-acetylmura 25.6 1.9E+02 0.0041 28.4 6.5 35 237-274 15-49 (480)
403 TIGR00824 EIIA-man PTS system, 25.5 2.8E+02 0.006 21.7 6.2 35 240-274 3-37 (116)
404 TIGR02113 coaC_strep phosphopa 25.4 1.3E+02 0.0028 25.7 4.6 34 240-273 2-36 (177)
405 cd04795 SIS SIS domain. SIS (S 25.4 1.1E+02 0.0024 21.7 3.7 31 241-271 1-32 (87)
406 PRK04148 hypothetical protein; 25.3 1.1E+02 0.0025 24.9 4.0 32 238-273 17-48 (134)
407 PRK07313 phosphopantothenoylcy 25.2 1.4E+02 0.003 25.6 4.8 36 239-274 2-38 (182)
408 cd03031 GRX_GRX_like Glutaredo 25.2 1.5E+02 0.0033 24.5 4.8 54 249-303 15-73 (147)
409 PRK05920 aromatic acid decarbo 25.1 1.4E+02 0.0031 26.2 4.9 35 238-272 3-38 (204)
410 PRK08305 spoVFB dipicolinate s 25.1 1.3E+02 0.0029 26.2 4.7 40 237-276 4-45 (196)
411 PRK08134 O-acetylhomoserine am 25.0 1.8E+02 0.0039 28.5 6.1 23 278-300 166-188 (433)
412 PRK10897 phosphohistidinoprote 25.0 1.1E+02 0.0024 23.0 3.7 29 236-264 58-86 (90)
413 PRK14727 putative mercuric red 24.7 1.6E+02 0.0035 29.0 5.8 41 238-281 188-229 (479)
414 TIGR00232 tktlase_bact transke 24.6 7.4E+02 0.016 25.8 10.8 78 124-211 158-242 (653)
415 PF01910 DUF77: Domain of unkn 24.6 1.5E+02 0.0032 22.5 4.3 49 241-289 3-55 (92)
416 PRK12325 prolyl-tRNA synthetas 24.5 2E+02 0.0044 28.2 6.4 59 239-299 346-408 (439)
417 PRK13685 hypothetical protein; 24.4 2E+02 0.0043 26.9 6.1 44 254-297 218-274 (326)
418 PF00266 Aminotran_5: Aminotra 24.4 2.1E+02 0.0046 26.8 6.4 21 278-298 156-176 (371)
419 cd06064 H2MP_F420-Reduc Endope 24.3 1.1E+02 0.0023 25.2 3.8 54 243-299 2-65 (150)
420 TIGR02053 MerA mercuric reduct 24.3 1.6E+02 0.0034 28.8 5.6 40 238-280 166-207 (463)
421 PTZ00145 phosphoribosylpyropho 24.2 7.1E+02 0.015 24.7 12.5 118 166-301 107-248 (439)
422 TIGR02032 GG-red-SF geranylger 24.2 1E+02 0.0022 27.4 3.9 32 240-274 2-33 (295)
423 PRK14652 UDP-N-acetylenolpyruv 24.1 3.5E+02 0.0077 25.1 7.6 79 180-266 38-120 (302)
424 KOG1549 Cysteine desulfurase N 24.0 1.5E+02 0.0032 29.2 5.1 56 242-297 133-188 (428)
425 PRK12444 threonyl-tRNA synthet 23.9 2E+02 0.0043 29.7 6.4 58 238-298 541-601 (639)
426 PRK05452 anaerobic nitric oxid 23.9 2.8E+02 0.0061 27.6 7.3 55 239-296 252-311 (479)
427 TIGR02690 resist_ArsH arsenica 23.8 3.4E+02 0.0073 24.1 7.1 49 251-300 44-101 (219)
428 KOG1185 Thiamine pyrophosphate 23.8 7.7E+02 0.017 25.0 10.0 27 180-206 528-555 (571)
429 PRK06416 dihydrolipoamide dehy 23.7 1.7E+02 0.0037 28.5 5.7 33 238-273 172-204 (462)
430 PRK12305 thrS threonyl-tRNA sy 23.6 2.1E+02 0.0045 29.0 6.5 57 239-298 477-535 (575)
431 PF01946 Thi4: Thi4 family; PD 23.6 1.3E+02 0.0028 27.1 4.2 32 239-273 18-49 (230)
432 PF00185 OTCace: Aspartate/orn 23.5 1.3E+02 0.0027 25.1 4.1 59 238-299 2-66 (158)
433 PF13738 Pyr_redox_3: Pyridine 23.4 1E+02 0.0022 25.8 3.6 32 237-271 166-197 (203)
434 PRK06222 ferredoxin-NADP(+) re 23.3 1.3E+02 0.0029 27.3 4.6 32 239-270 99-130 (281)
435 cd02000 TPP_E1_PDC_ADC_BCADC T 23.3 5.1E+02 0.011 23.7 8.5 32 175-207 189-224 (293)
436 PRK00923 sirohydrochlorin coba 23.3 3.6E+02 0.0078 21.1 6.6 57 240-296 3-66 (126)
437 PRK13906 murB UDP-N-acetylenol 23.0 3E+02 0.0066 25.6 6.9 28 180-207 39-66 (307)
438 TIGR01470 cysG_Nterm siroheme 22.9 2.6E+02 0.0057 24.3 6.2 53 237-298 8-60 (205)
439 TIGR00418 thrS threonyl-tRNA s 22.9 2.1E+02 0.0047 28.8 6.4 57 239-298 471-529 (563)
440 PF01494 FAD_binding_3: FAD bi 22.9 1.1E+02 0.0024 27.7 4.1 33 240-275 3-35 (356)
441 PRK10310 PTS system galactitol 22.9 1.4E+02 0.0031 22.5 3.9 18 254-271 21-38 (94)
442 COG2241 CobL Precorrin-6B meth 22.9 2.4E+02 0.0051 25.0 5.8 58 239-302 95-152 (210)
443 COG1010 CobJ Precorrin-3B meth 22.8 1.4E+02 0.003 27.1 4.3 31 264-296 127-161 (249)
444 PRK06019 phosphoribosylaminoim 22.8 2.7E+02 0.0059 26.4 6.8 56 239-298 3-71 (372)
445 cd06198 FNR_like_3 NAD(P) bind 22.8 4.1E+02 0.0089 22.6 7.4 52 238-289 95-150 (216)
446 PRK12769 putative oxidoreducta 22.8 1E+02 0.0022 31.9 4.0 34 237-273 326-359 (654)
447 PRK13905 murB UDP-N-acetylenol 22.7 4.1E+02 0.0088 24.5 7.7 78 180-265 33-114 (298)
448 PRK14483 DhaKLM operon coactiv 22.6 2.4E+02 0.0053 26.7 6.2 52 154-206 49-101 (329)
449 TIGR01317 GOGAT_sm_gam glutama 22.6 1.1E+02 0.0024 30.4 4.1 34 237-273 142-175 (485)
450 PRK15473 cbiF cobalt-precorrin 22.4 1.1E+02 0.0024 27.6 3.8 32 267-298 140-172 (257)
451 PTZ00052 thioredoxin reductase 22.4 1.8E+02 0.0039 28.9 5.7 50 238-290 182-235 (499)
452 PRK14194 bifunctional 5,10-met 22.3 1.6E+02 0.0036 27.5 5.0 51 237-295 158-208 (301)
453 cd06219 DHOD_e_trans_like1 FAD 22.3 1.8E+02 0.0038 25.9 5.1 34 238-271 97-130 (248)
454 PRK06718 precorrin-2 dehydroge 22.3 3.5E+02 0.0076 23.4 6.8 33 237-272 9-41 (202)
455 PRK12778 putative bifunctional 22.1 1E+02 0.0023 32.4 4.1 33 237-272 430-462 (752)
456 TIGR02006 IscS cysteine desulf 22.0 2.4E+02 0.0051 26.9 6.3 24 278-301 159-182 (402)
457 TIGR01316 gltA glutamate synth 22.0 2.9E+02 0.0063 27.0 7.0 36 237-275 271-306 (449)
458 COG0059 IlvC Ketol-acid reduct 21.9 2E+02 0.0043 27.2 5.3 34 237-274 17-50 (338)
459 PRK06827 phosphoribosylpyropho 21.9 6.4E+02 0.014 24.4 9.1 75 226-301 61-171 (382)
460 TIGR00137 gid_trmFO tRNA:m(5)U 21.9 1.3E+02 0.0028 29.7 4.3 33 239-274 1-33 (433)
461 COG0277 GlcD FAD/FMN-containin 21.8 3.8E+02 0.0083 25.8 7.8 83 172-258 27-113 (459)
462 PF01488 Shikimate_DH: Shikima 21.8 1.3E+02 0.0028 24.1 3.8 32 237-271 11-43 (135)
463 TIGR00521 coaBC_dfp phosphopan 21.7 1.5E+02 0.0033 28.7 4.8 38 237-274 2-40 (390)
464 PRK12759 bifunctional gluaredo 21.7 2.6E+02 0.0056 27.2 6.4 33 240-273 3-35 (410)
465 PRK10262 thioredoxin reductase 21.7 2.5E+02 0.0054 25.7 6.2 40 237-279 145-184 (321)
466 TIGR01421 gluta_reduc_1 glutat 21.7 2.4E+02 0.0051 27.6 6.2 41 238-281 166-208 (450)
467 PRK06719 precorrin-2 dehydroge 21.6 1.3E+02 0.0027 25.1 3.7 33 237-272 12-44 (157)
468 PRK14012 cysteine desulfurase; 21.5 2.4E+02 0.0053 26.8 6.2 25 276-300 159-183 (404)
469 cd01450 vWFA_subfamily_ECM Von 21.4 1.4E+02 0.003 23.6 3.9 48 240-290 106-155 (161)
470 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.3 1.5E+02 0.0033 23.5 4.2 45 227-271 51-96 (153)
471 PRK05294 carB carbamoyl phosph 21.2 1.3E+02 0.0028 33.2 4.7 52 239-290 8-81 (1066)
472 PRK06370 mercuric reductase; V 21.2 2E+02 0.0043 28.1 5.6 33 238-273 171-203 (463)
473 PF01266 DAO: FAD dependent ox 21.2 1.1E+02 0.0024 27.8 3.6 31 240-273 1-31 (358)
474 PF08859 DGC: DGC domain; Int 21.2 2.8E+02 0.0061 21.6 5.4 47 250-298 13-59 (110)
475 PRK11230 glycolate oxidase sub 21.1 1.2E+02 0.0027 30.3 4.2 35 172-207 51-85 (499)
476 cd01473 vWA_CTRP CTRP for CS 21.0 2.3E+02 0.0049 24.2 5.4 45 241-288 112-160 (192)
477 PRK12436 UDP-N-acetylenolpyruv 21.0 1.3E+02 0.0029 28.0 4.1 28 180-207 39-66 (305)
478 PRK05225 ketol-acid reductoiso 21.0 70 0.0015 31.9 2.3 57 236-296 34-104 (487)
479 cd02066 GRX_family Glutaredoxi 21.0 1.9E+02 0.0042 19.0 4.1 33 241-274 2-34 (72)
480 PLN02735 carbamoyl-phosphate s 21.0 1.8E+02 0.0039 32.3 5.6 52 239-290 24-97 (1102)
481 PRK00676 hemA glutamyl-tRNA re 20.9 2.2E+02 0.0047 27.2 5.5 42 237-281 173-214 (338)
482 PRK06702 O-acetylhomoserine am 20.9 2.1E+02 0.0046 28.1 5.7 24 276-300 158-185 (432)
483 PLN02757 sirohydrochlorine fer 20.8 2.6E+02 0.0056 23.3 5.5 59 238-296 13-78 (154)
484 TIGR01369 CPSaseII_lrg carbamo 20.8 2E+02 0.0044 31.7 6.0 52 239-290 7-80 (1050)
485 PF01053 Cys_Met_Meta_PP: Cys/ 20.8 1.8E+02 0.004 28.0 5.2 36 266-301 140-181 (386)
486 TIGR00179 murB UDP-N-acetyleno 20.7 1.4E+02 0.0031 27.4 4.2 28 180-207 15-42 (284)
487 KOG0029 Amine oxidase [Seconda 20.6 1.3E+02 0.0028 30.2 4.2 34 237-273 14-47 (501)
488 PF07411 DUF1508: Domain of un 20.5 1.7E+02 0.0037 19.3 3.5 23 250-272 27-49 (49)
489 COG1925 FruB Phosphotransferas 20.5 1.5E+02 0.0032 22.4 3.5 28 236-263 56-83 (88)
490 TIGR02361 dak_ATP dihydroxyace 20.4 2.5E+02 0.0054 28.8 6.2 52 154-206 48-101 (574)
491 PRK07251 pyridine nucleotide-d 20.4 2.3E+02 0.0049 27.4 5.8 33 238-273 157-189 (438)
492 PF13241 NAD_binding_7: Putati 20.3 1.4E+02 0.0031 22.6 3.6 35 237-274 6-40 (103)
493 PF01918 Alba: Alba; InterPro 20.3 1.7E+02 0.0036 20.5 3.7 26 239-264 31-56 (70)
494 PRK03170 dihydrodipicolinate s 20.1 2.6E+02 0.0056 25.5 5.8 62 238-300 96-164 (292)
495 cd00952 CHBPH_aldolase Trans-o 20.1 2.7E+02 0.0059 25.8 6.0 35 264-299 135-171 (309)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-66 Score=467.11 Aligned_cols=263 Identities=55% Similarity=0.895 Sum_probs=255.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEec
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~ 117 (305)
++++++|++++|.+.+++|++|+++++|++ +||+|+++++|.++||++|++|++|+|.+++|+|.|+|+.|+||+++++
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 368999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
|.+|+..|+|||.|++++.+||++|+.++ |+|++++.|....++.||||+..+++.++||++|++|+||.|++++++.|
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999999999999999999 99999998888889999999999999999999999999999999999999
Q ss_pred HhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccC
Q 021963 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (305)
Q Consensus 198 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P 277 (305)
++++.||++++||+|||....++|+++|.+|+||+++.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||+|
T Consensus 160 Ird~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P 239 (324)
T COG0022 160 IRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP 239 (324)
T ss_pred hcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCc
Confidence 99999999999999999767788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCcEEEEeCCccc
Q 021963 278 WDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
+|.++|.++++||+|+|+|||.+..
T Consensus 240 lD~etIi~SvkKTgR~viV~Ea~~~ 264 (324)
T COG0022 240 LDKETIIASVKKTGRLVIVHEAPKT 264 (324)
T ss_pred cCHHHHHHHHHhhCcEEEEEecccc
Confidence 9999999999999999999998763
No 2
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-66 Score=462.52 Aligned_cols=249 Identities=26% Similarity=0.372 Sum_probs=231.0
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEec
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~ 117 (305)
...++|++|+++|.+++++|+++|++++|+..++ .+..|.++| ||||+|+||+||+|+|+|+|||++|++||++ +
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St---~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSST---KTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS-T 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEeccccccc---chhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceee-c
Confidence 4578999999999999999999999999998443 478999999 9999999999999999999999999999999 5
Q ss_pred ccchHH-hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 021963 118 FADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (305)
Q Consensus 118 ~~~F~~-ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~ 195 (305)
|+.|+. |+||||||++|+++ +|| ++|.+++|...+++|++| +.||+++||.+||++|++|+|+.+++.++.
T Consensus 80 fa~F~s~Ra~EQir~~iay~~------lnV-Kiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~ 152 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAYNN------LNV-KIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILD 152 (312)
T ss_pred hHHHHHHHHHHHHHHHhhhcc------CCe-EEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHH
Confidence 999996 99999999999988 788 999998888888776666 599999999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCccCCCCC-CCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 196 SCIRDPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 196 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++.++++|+|+ |+.|.+.|.+.++ +|.|++||++++|+|+|++||++|.|+..+++|++.|+++||+++|||++|
T Consensus 153 ~~~~~~GP~Y~----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~t 228 (312)
T COG3958 153 QIADYKGPVYM----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFT 228 (312)
T ss_pred HHHhcCCCEEE----EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCc
Confidence 99999999999 7777666655444 499999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 275 LIPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 275 i~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
|||+|++.|.+.++++++|||+|||+..
T Consensus 229 IKPiD~~~i~~~A~~t~~IvT~EeHsi~ 256 (312)
T COG3958 229 IKPIDEQAILKAARETGRIVTAEEHSII 256 (312)
T ss_pred cCCCCHHHHHHHHhhcCcEEEEecceee
Confidence 9999999999999999999999999863
No 3
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=8.8e-65 Score=474.94 Aligned_cols=260 Identities=40% Similarity=0.665 Sum_probs=240.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCC-CcccccchhhHhhhCCC-cEEecchhHHHHHHHHHHHHhCCCeEEEEe
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~-g~~~~~~~~~~~~~gp~-r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~ 116 (305)
++++|++++++|.+++++||+++++++|++. +++++.+++|+++| |+ ||||+||+||+||++|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~ 81 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG 81 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 4789999999999999999999999999974 44466689999999 78 999999999999999999999999999986
Q ss_pred cccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 021963 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (305)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~ 196 (305)
.+++|++||||||+|++|+++|++++++++ |++++++++..+.+|.+||+..+++||++|||+|++|+|+.|++.++++
T Consensus 82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~-~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTI-PIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCccC-CEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 577788999999999999999999999999 9999987666656788886655699999999999999999999999999
Q ss_pred hHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 197 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+++.++|+|||+|+.+++.. +.++++++.+++||++++++|+|++||++|.|++.|++|++.|+++||+++|||++|||
T Consensus 161 a~~~~~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ik 239 (327)
T CHL00144 161 AIRSNNPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLK 239 (327)
T ss_pred HHhCCCcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCC
Confidence 99999999999999998854 55666678899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
|||+++|.++++++++|||+|||+.
T Consensus 240 PlD~~~i~~~~~~t~~vv~vEE~~~ 264 (327)
T CHL00144 240 PLDLGTISKSVKKTHKVLIVEECMK 264 (327)
T ss_pred CCCHHHHHHHHHhhCcEEEEECCCC
Confidence 9999999999999999999999986
No 4
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-63 Score=470.62 Aligned_cols=265 Identities=60% Similarity=1.026 Sum_probs=248.2
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEE
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~ 115 (305)
..+++|+++++++|.+++++|++++++++|++ +|++++.+++|+++|||+||||+||+||+|+++|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 36788999999999999999999999999997 55556668999999999999999999999999999999999999999
Q ss_pred ecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 021963 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (305)
Q Consensus 116 ~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~ 195 (305)
++|++|++||+|||+|++|+++|++++++++ ++|+++++|..+.+|++|++.++++||++|||+|++|+|+.|++.+++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v-~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDC-PIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccC-CEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 6689999999999999999999999999999 999999988888899999877779999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 196 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
++++.++|+||++|++++|...+.++.+++.+++||++++++|+|++||++|+++..|++|++.|+++|++++|||++++
T Consensus 191 ~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l 270 (355)
T PTZ00182 191 AAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSL 270 (355)
T ss_pred HHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeC
Confidence 99999999999999999987655555556788999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 276 IPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
||||++.|.+.++++++|+|||||+..
T Consensus 271 ~Pld~e~i~~~~~~~~~IvvvEE~~~~ 297 (355)
T PTZ00182 271 RPWDRETIVKSVKKTGRCVIVHEAPPT 297 (355)
T ss_pred CCCCHHHHHHHHhcCCEEEEEEeCCCC
Confidence 999999999999999999999999873
No 5
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=3.1e-63 Score=464.95 Aligned_cols=260 Identities=43% Similarity=0.750 Sum_probs=240.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEec
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~ 117 (305)
++++|++++++|.+++++|++++++++|++ .++.|+.+++|+++|||+||||+||+||||+++|+|||++|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~- 81 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF- 81 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe-
Confidence 468999999999999999999999999998 455666679999999999999999999999999999999999999996
Q ss_pred cc-chHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 021963 118 FA-DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (305)
Q Consensus 118 ~~-~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~ 196 (305)
++ +|++||||||+|++|+++|++++++++ ++++++++|.++.+|+||++..+++||++|||+|++|+|+.|++.++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v-~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKC-PIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCc-cEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 55 788999999999999999999999999 9999999888888888887655699999999999999999999999999
Q ss_pred hHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 197 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+++.++|+||++++..+. ..++++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++||
T Consensus 161 a~~~~~Pv~i~~~~~~~~-~~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~ 239 (327)
T PRK09212 161 AIRDPNPVIFLENEILYG-HSHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLR 239 (327)
T ss_pred HHhCCCcEEEEEchhhcC-CCCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 999999999999886665 2345555567899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
|||+++|.++++++++|||||||+.
T Consensus 240 Pld~~~i~~~~~~~~~vv~vEe~~~ 264 (327)
T PRK09212 240 PLDTETIIESVKKTNRLVVVEEGWP 264 (327)
T ss_pred CCCHHHHHHHHHhCCeEEEEcCCCC
Confidence 9999999999999999999999985
No 6
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=7.3e-63 Score=466.32 Aligned_cols=264 Identities=38% Similarity=0.675 Sum_probs=239.1
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEE
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~ 115 (305)
..+++||++++++|.+++++|++++++++|++ +++.++.+++|.++|||+||||+||+|||||++|+|||++|+|||++
T Consensus 24 ~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~ 103 (356)
T PLN02683 24 AKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVE 103 (356)
T ss_pred ccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence 45689999999999999999999999999997 45566667889999999999999999999999999999999999999
Q ss_pred ecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 021963 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (305)
Q Consensus 116 ~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~ 195 (305)
+.+++|++||||||+|++|+++|+++++.++ |++++++.|...++|+||++.++++||++|||+|++|+|+.|++.+++
T Consensus 104 ~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~-pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 104 FMTFNFSMQAIDHIINSAAKTNYMSAGQISV-PIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred EehhhHHHHHHHHHHHHHHHhccccCCCccC-CEEEEEeCCCCCCCCCccccCHHHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 7567789999999999999999999999888 889888766655568888877789999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCccCC---CCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 196 SCIRDPNPVVFFEPKWLYRLSVEEV---PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 196 ~a~~~~~Pv~i~~~~~l~~~~~~~~---~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
++++.++|+|||+++.+++...+.. +++++.+++|+++++++|+|++||++|+++..|++|++.|+++||+++|||+
T Consensus 183 ~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 183 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999888876533221 1224678899999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 273 KTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 273 ~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
+||||||+++|.++++++++|||+|||+.
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~ 291 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWP 291 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCc
Confidence 99999999999999999999999999986
No 7
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=4.2e-62 Score=473.64 Aligned_cols=263 Identities=40% Similarity=0.710 Sum_probs=241.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEe
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~ 116 (305)
.++++|++++++|.+++++|++++++++|++ +++.++.+++|.++|||+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 4567999999999999999999999999997 555676788999999999999999999999999999999999999997
Q ss_pred cccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 021963 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (305)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~ 196 (305)
++.+|++||||||+|++|+..|++|+..++ |++++++.|.....|+||+++|+++||++|||+|++|+|+.|++.++++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~-pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGC-PIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCC-CEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 556788999999999999999999999999 9999988777666788999999999999999999999999999999999
Q ss_pred hHhCCCCEEEeccccccccCccCCCC-CCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 197 CIRDPNPVVFFEPKWLYRLSVEEVPE-DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 197 a~~~~~Pv~i~~~~~l~~~~~~~~~~-~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
+++.++|+||++++.++.... .+|. +++.+++||++++|+|+|++||++|.++..|++|++.|+++||+++|||++||
T Consensus 299 ai~~~~Pv~ile~~~ry~~~~-~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 299 AIRDPNPVIFLENEILYGQSF-DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred HhhCCCcEEEEechhhcCCCC-CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999999999998886665431 1222 45778999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 276 IPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
||||+++|.++++++++|||+|||+..
T Consensus 378 kPlD~~~i~~sv~kt~~vvtvEE~~~~ 404 (464)
T PRK11892 378 RPMDTETIVESVKKTNRLVTVEEGWPQ 404 (464)
T ss_pred CcCCHHHHHHHHHhcCeEEEEeCCCcC
Confidence 999999999999999999999999874
No 8
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.2e-59 Score=464.95 Aligned_cols=252 Identities=21% Similarity=0.300 Sum_probs=225.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecc
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~ 118 (305)
..+|+++|+++|.+++++|++||++++|+..++ .++.|+++| |+||||+||||||||++|+|||++|++||+++ |
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt---gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i-y 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA---SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII-P 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc---cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe-e
Confidence 468999999999999999999999999998543 379999999 99999999999999999999999999999995 9
Q ss_pred cchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
++|++||||||+||+|+++ +|| ++++.. +|.++.+|++| +.+|+++||++|||+|++|+|++|++.+++++
T Consensus 455 stFlqRAyDQI~~Dval~~------lpV-~~vid~-aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQR------KAV-RFVITS-AGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred hhHHHHHHHHHHHHHHhhc------CCc-eEEEEC-CccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999998 577 777654 56566777555 69999999999999999999999999999999
Q ss_pred Hh-CCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 198 IR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 198 ~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+. .++|+|||+||.........+ ++++.+++||++++++|+|++|||+|.|++.|++|++.|+++||+++|||++++|
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~~~~~-~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ik 605 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNMNYLV-PTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCK 605 (701)
T ss_pred HhcCCCCEEEEecccccCCCCcCC-CCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 85 579999999986432210011 2346788999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCccccC
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYWRFW 304 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~~~~ 304 (305)
|||++.|.++++++++|||||||+.++|
T Consensus 606 PLD~e~I~~~~~k~~~vVTvEE~~~GG~ 633 (701)
T PLN02225 606 PLDIKLVRDLCQNHKFLITVEEGCVGGF 633 (701)
T ss_pred CCCHHHHHHHHhhcCeEEEEcCCCCCch
Confidence 9999999999999999999999987664
No 9
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-57 Score=399.21 Aligned_cols=265 Identities=42% Similarity=0.719 Sum_probs=251.0
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEecccC-CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEE
Q 021963 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA 114 (305)
Q Consensus 36 ~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~ 114 (305)
.+..++.|+|++++|.|.+++|+++++++++++ ++|+|+.+++|.+|||+.|++|++|+|.+..|+|.|+|+.|+||++
T Consensus 31 ~~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ 110 (359)
T KOG0524|consen 31 AAKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPIC 110 (359)
T ss_pred cceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhh
Confidence 367789999999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred EecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHH
Q 021963 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (305)
Q Consensus 115 ~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l 194 (305)
+++...|++.|+|||.|+.++..||++|++++ |+|+++++|...+-+++|||...+|+.++||++|++|.+++|+++++
T Consensus 111 efMtfnFsmqAid~IiNsaakt~YmSgG~~~~-piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLl 189 (359)
T KOG0524|consen 111 EFMTFNFSMQAIDQIINSAAKTHYMSGGQQPV-PIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLL 189 (359)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhcccCCceec-cEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHH
Confidence 97666788999999999999999999999999 99999999998889999999999999999999999999999999999
Q ss_pred HHhHhCCCCEEEeccccccccCccCCCC----CCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEE
Q 021963 195 LSCIRDPNPVVFFEPKWLYRLSVEEVPE----DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (305)
Q Consensus 195 ~~a~~~~~Pv~i~~~~~l~~~~~~~~~~----~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI 270 (305)
+.|+++++||+++++.-||....+ +++ ++|..|+||+++.|+|+|+||+++..++..|+||++.|.++|++++||
T Consensus 190 KaAIRd~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVI 268 (359)
T KOG0524|consen 190 KAAIRDENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVI 268 (359)
T ss_pred HHhccCCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeE
Confidence 999999999999999988865432 332 458899999999999999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 271 DLKTLIPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 271 ~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
|+++|+|||.++|.++++||.++++||++++.
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~ 300 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQ 300 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccc
Confidence 99999999999999999999999999999874
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.6e-56 Score=432.81 Aligned_cols=257 Identities=18% Similarity=0.305 Sum_probs=229.8
Q ss_pred hcCCCCC--CCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHh
Q 021963 30 HDGGVGS--GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA 107 (305)
Q Consensus 30 ~~~~~~~--~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~ 107 (305)
.+|...+ ....||.++|+++|.+++++|+++|.+++.|..|+ .+..|+++| |+||||+|||||++|++|+|||.
T Consensus 304 ~tg~~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt---GL~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~ 379 (627)
T COG1154 304 ETGQSKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT---GLVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAA 379 (627)
T ss_pred ccCccCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC---ChHHHHHhC-chhheehhhhHHHHHHHHHHHHh
Confidence 4454443 45677999999999999999999999999998654 489999999 99999999999999999999999
Q ss_pred CCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHHHHccCCCcEEEeeCC
Q 021963 108 MGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRS 186 (305)
Q Consensus 108 ~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a~~~~iP~l~V~~P~d 186 (305)
.|+||++++ |++|+||||||+.||+|++| +|| ++.+.|+|.+|.||.||+ ..|+++||.+|||+|++|+|
T Consensus 380 ~G~kPvvaI-YSTFLQRAYDQliHDvaiqn------LPV--~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~d 450 (627)
T COG1154 380 EGMKPVVAI-YSTFLQRAYDQLIHDVAIQN------LPV--TFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRD 450 (627)
T ss_pred CCCCCEEEE-ecHHHHHHHHHHHHHHHhcc------CCe--EEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCC
Confidence 999999997 99999999999999999998 455 334678999999888885 89999999999999999999
Q ss_pred HHHHHHHHHHhHhCC-CCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCC
Q 021963 187 PRQAKGLLLSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGI 265 (305)
Q Consensus 187 ~~e~~~~l~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi 265 (305)
.+|++.++++++.++ +|+.||+||.-.-... ...+...+++||++++++|.|++|+++|.++..|++|++.|.+.||
T Consensus 451 e~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~--~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi 528 (627)
T COG1154 451 EEELRQMLYTALAQDDGPVAIRYPRGNGVGVI--LTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGI 528 (627)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCCCC--cccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCC
Confidence 999999999999986 8999999986322111 1111356889999999999999999999999999999999999999
Q ss_pred CeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 266 SCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 266 ~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
+++|||++++||+|++.|.++++.++.+||+|||..
T Consensus 529 ~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~ 564 (627)
T COG1154 529 SVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVV 564 (627)
T ss_pred CcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcc
Confidence 999999999999999999999999999999999985
No 11
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.9e-56 Score=441.92 Aligned_cols=269 Identities=19% Similarity=0.293 Sum_probs=228.5
Q ss_pred hhhHHHHHhhcCCCCC--CCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHH
Q 021963 21 CANKQLIQQHDGGVGS--GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~--~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~ 98 (305)
.|-..+++..+|+..+ ....+|+++|+++|.+++++|++|+++++|++.+. .++.|+++| |+||||+||+||+|
T Consensus 336 ~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt---~~~~f~~~f-PdR~fdvGIAEq~~ 411 (641)
T PLN02234 336 YHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT---MLNLFESRF-PTRCFDVGIAEQHA 411 (641)
T ss_pred cCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCc---chHHHHHHc-cccccCCCcCHHHH
Confidence 3433344445554322 23468999999999999999999999999997432 378999999 99999999999999
Q ss_pred HHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCC
Q 021963 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVP 177 (305)
Q Consensus 99 v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP 177 (305)
|++|+|||++|+|||+++ |++|++||||||++++|+++ +|+ .+++.. .|.++.+|++| +.+|++++|++|
T Consensus 412 Vg~AaGLA~~G~rPvv~~-fs~Fl~RA~DQI~~dva~~~------lpV-~~v~~~-aG~~g~dG~TH~~~~Dia~lr~iP 482 (641)
T PLN02234 412 VTFAAGLACEGLKPFCTI-YSSFMQRAYDQVVHDVDLQK------LPV-RFAIDR-AGLMGADGPTHCGAFDVTFMACLP 482 (641)
T ss_pred HHHHHHHHHCCCeEEEEe-hHHHHHHHHHHHHHHHhhcC------CCE-EEEEeC-CccCCCCCccccccHHHHHHhcCC
Confidence 999999999999999996 99999999999999999887 566 655544 45567677666 589999999999
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhC-CCCEEEeccccccccCccCCCC--CCCcccCCceEEeeeCCcEEEEEeChhHHHHH
Q 021963 178 GLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPE--DDYMLPLSEAEVIREGSDITLVGWGAQLSIME 254 (305)
Q Consensus 178 ~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~al 254 (305)
||+|++|+|+.|++.++++++.. ++|+|||+||..+... .++. ..+.+++||++++++|+|++||++|++++.|+
T Consensus 483 nl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~--~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al 560 (641)
T PLN02234 483 NMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGV--SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCL 560 (641)
T ss_pred CCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeeccccccc--ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHH
Confidence 99999999999999999998865 5999999998654211 1221 13467899999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCccccC
Q 021963 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYWRFW 304 (305)
Q Consensus 255 eAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~~~~ 304 (305)
+|++.|+++||+++|||++++||||++.|.+.+++++.|||+|||..+++
T Consensus 561 ~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~GG~ 610 (641)
T PLN02234 561 EAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGF 610 (641)
T ss_pred HHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCCCcH
Confidence 99999999999999999999999999999888888899999999988764
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.3e-55 Score=440.70 Aligned_cols=251 Identities=20% Similarity=0.332 Sum_probs=219.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecc
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~ 118 (305)
..+|.++|+++|.+++++|++||++++|++ ++++ +..|+++| |+||||+||+||+||++|+|||+.|+|||+++ |
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~--g~~g-l~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG--GGTG-LNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC--Cccc-hHHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-c
Confidence 457999999999999999999999999987 3343 67999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
++|++||||||++++|+++ +|+ .+++.+ +|.++.+|++| +.+|++++|++|||+|++|+|++|++.+++++
T Consensus 430 s~Fl~RA~DQI~~dval~~------lpV-v~v~~~-aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 501 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQK------LPV-RFAMDR-AGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATA 501 (677)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999887 455 444333 45566767666 58999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCccCCCCC--CCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 198 IRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 198 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~--~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++. ++|+|||+||.... ...++.+ ++.+++||++++++|+|++|||+|.|++.|++|++.|+++||+++|||+++
T Consensus 502 l~~~~gPv~IR~pr~~~~--~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~ 579 (677)
T PLN02582 502 AAIDDRPSCFRYPRGNGI--GVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARF 579 (677)
T ss_pred HhCCCCCEEEEEecCCCC--CcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 975 59999988875311 1112221 256889999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhccCcEEEEeCCccccC
Q 021963 275 LIPWDKETVEASVRKTGRLLPRSSGYWRFW 304 (305)
Q Consensus 275 i~P~d~~~i~~~~~~~~~vvvvEe~~~~~~ 304 (305)
+||||++.|.+.+++++.|||+|||+.++|
T Consensus 580 lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~ 609 (677)
T PLN02582 580 CKPLDRALIRSLAKSHEVLITVEEGSIGGF 609 (677)
T ss_pred CCCCCHHHHHHHhhhCCEEEEECCCCCCcH
Confidence 999999999888888889999999998877
No 13
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.5e-54 Score=436.06 Aligned_cols=250 Identities=19% Similarity=0.328 Sum_probs=220.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecc
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~ 118 (305)
..+|+++|+++|.+++++|++|+++++|+..++ .++.|+++| |+||||+||+||+||++|+|||++|++||+++ |
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~---~~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~-~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS---GLDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI-Y 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc---ChHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 468999999999999999999999999996333 379999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
++|++||||||++++|+++ +|+ .+++.+ +|.++.+|++| +.+|+++||++|||+|++|+|+.|++.+++++
T Consensus 384 a~Fl~ra~dQi~~~~a~~~------lpV-~i~~~~-~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a 455 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQK------LPV-LFAIDR-AGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTG 455 (617)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999876 454 444333 44457766666 58999999999999999999999999999999
Q ss_pred HhCC-CCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 198 IRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 198 ~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
++.+ +|+|||++|..+.. . ..++.++.+++||++++++|+|++||++|.|++.|++|++.|+++||+++|||++|||
T Consensus 456 ~~~~~~Pv~ir~~r~~~~~-~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lk 533 (617)
T TIGR00204 456 YHYDDGPIAVRYPRGNAVG-V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVK 533 (617)
T ss_pred HhCCCCCEEEEEccCCcCC-c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCC
Confidence 9965 99999888764321 1 1112346789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCcccc
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYWRF 303 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~~~ 303 (305)
|||+++|.++++++++|||||||+..+
T Consensus 534 PlD~e~i~~~~~k~~~vvtvEE~~~~G 560 (617)
T TIGR00204 534 PLDEELILEIAASHEKLVTVEENAIMG 560 (617)
T ss_pred cCCHHHHHHHHhhcCeEEEEECCCCcc
Confidence 999999999999999999999998643
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3e-53 Score=424.31 Aligned_cols=248 Identities=18% Similarity=0.221 Sum_probs=215.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecc
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~ 118 (305)
..+++++++++|.+++++|++++++++|++. .++ ++.|.++| |+||||+||+||+|+++|+|||+.|++||+. +|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~--~~~-~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG--VFG-LKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-VN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCcccc--ccC-cHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-ee
Confidence 5689999999999999999999999999863 343 68999999 9999999999999999999999999999998 59
Q ss_pred cchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
++|++||||||++++|+++ +|+ .+++. ++|.++ +|++| +.+|+++||++|||+|++|+|+.|++.+++++
T Consensus 352 s~Fl~ra~dQi~~d~a~~~------lpv-~~~~~-~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINN------NPA-VMIVF-GGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEE-CCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999999887 455 55544 344444 66555 58999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhc-CCCeEEEEeccc
Q 021963 198 IRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTL 275 (305)
Q Consensus 198 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~~vI~~~~i 275 (305)
++. ++|+|||+||..++. .+..+..+..+|++++++|+|++|||+|++++.|++|++.|+++ ||+++|||++|+
T Consensus 423 ~~~~~gP~~ir~~r~~~~~----~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~i 498 (581)
T PRK12315 423 LTQHEHPVAIRVPEHGVES----GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFI 498 (581)
T ss_pred HhCCCCcEEEEEcCCccCC----CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcC
Confidence 986 799999888765432 11112235567999999999999999999999999999999999 999999999999
Q ss_pred cCCCHHHHHHHHhccCcEEEEeCCcc-ccC
Q 021963 276 IPWDKETVEASVRKTGRLLPRSSGYW-RFW 304 (305)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~-~~~ 304 (305)
||||++.+.+++++++.+||+|||+. ++|
T Consensus 499 kPlD~~~i~~~~~~~~~vvtvEe~~~~GG~ 528 (581)
T PRK12315 499 TGLDEELLEKLKEDHELVVTLEDGILDGGF 528 (581)
T ss_pred CCCCHHHHHHHHhhCCEEEEEcCCCcCCCH
Confidence 99999999888888889999999987 435
No 15
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.5e-52 Score=420.16 Aligned_cols=250 Identities=23% Similarity=0.345 Sum_probs=216.3
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecc
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~ 118 (305)
..+|+++|+++|.+++++|++++++++|+..++ .++.|+++| |+||||+||+||+|+++|+|||+.|++||+++ |
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~-f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GLDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAV-Y 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---ChHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEe-h
Confidence 357999999999999999999999999997432 368999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHHHHccCCCcEEEeeCCHHHHHHHHHHh
Q 021963 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (305)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a 197 (305)
++|++||+|||++++|+++ +|+ .+++. +.|.++.+|++|+ .+|+++||++||++|++|+|+.|++.+++++
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~------lpv-~~v~~-~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQN------LPV-RFVLD-RAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC------CCe-EEEEE-CCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999887 566 55543 3454677777665 8999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 198 IRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 198 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
++. ++|+|||++|..+. ...++.+++.+++||+.++++|+|++|||+|++++.|++|++.|+++||+++|||+++|+
T Consensus 465 ~~~~~~P~~ir~~r~~~~--~~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lk 542 (641)
T PRK12571 465 AAHDDGPIAVRFPRGEGV--GVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVK 542 (641)
T ss_pred HhCCCCcEEEEEecCcCC--ccccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCC
Confidence 995 89999988875321 112333446688999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCcc-ccC
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYW-RFW 304 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~-~~~ 304 (305)
|||++.|.+.+ ++++++|+||++. ++|
T Consensus 543 PlD~~~i~sv~-k~~~vvvveE~~~~gG~ 570 (641)
T PRK12571 543 PLDEALTDLLV-RHHIVVIVEEQGAMGGF 570 (641)
T ss_pred CcCHHHHHHHh-hhCCEEEEECCCCCCCH
Confidence 99999986655 5557888888754 666
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=8e-52 Score=414.99 Aligned_cols=244 Identities=21% Similarity=0.345 Sum_probs=216.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEeccc
Q 021963 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (305)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~ 119 (305)
.+||++++++|.+++++|++++++++|+..++ .+..|+++| |+||||+||+||+|+++|+|||+.|++||+++ |+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GLVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CHHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEe-eH
Confidence 67999999999999999999999999986433 356799999 99999999999999999999999999999995 99
Q ss_pred chHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhH
Q 021963 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (305)
Q Consensus 120 ~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~ 198 (305)
+|++||+|||++++|+++ +|+ .+++.+.++ .+.+|++| +.+|+++||++||++|++|+|+.|++.++++++
T Consensus 354 ~F~~ra~dQi~~~~a~~~------~pv-~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQN------LPV-TFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred HHHHHHHHHHHHHhhhcC------CCE-EEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 999999999999999877 566 565555554 55666666 589999999999999999999999999999999
Q ss_pred hC-CCCEEEeccccccccCccCCC-CCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 199 RD-PNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 199 ~~-~~Pv~i~~~~~l~~~~~~~~~-~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+. ++|+|||++|.... .++ ++.+.+++||++++++|+|++|||+|++++.|++|++.|+ +++|||++|++
T Consensus 426 ~~~~~P~~ir~~r~~~~----~~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~ 497 (580)
T PRK05444 426 AYDDGPIAIRYPRGNGV----GVELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVK 497 (580)
T ss_pred hCCCCcEEEEecCCCCC----CCCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCC
Confidence 76 89999987765432 222 2246789999999999999999999999999999999995 89999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEeCCcc-ccC
Q 021963 277 PWDKETVEASVRKTGRLLPRSSGYW-RFW 304 (305)
Q Consensus 277 P~d~~~i~~~~~~~~~vvvvEe~~~-~~~ 304 (305)
|||++.|.+++++++++||||||+. ++|
T Consensus 498 p~D~~~i~~~~~~~~~vv~vEe~~~~gG~ 526 (580)
T PRK05444 498 PLDEELLLELAAKHDLVVTVEEGAIMGGF 526 (580)
T ss_pred ccCHHHHHHHHhcCCeEEEEECCCCCCCH
Confidence 9999999999999999999999998 577
No 17
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-51 Score=356.57 Aligned_cols=266 Identities=79% Similarity=1.305 Sum_probs=255.2
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEE
Q 021963 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (305)
Q Consensus 36 ~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~ 115 (305)
+.++++..++++++|.-.++.||+-++.++|++.||+|+.+-+++++||.+|+||++++||.++|+.+|+|..|.+.+.+
T Consensus 37 e~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiae 116 (362)
T KOG0525|consen 37 EKKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAE 116 (362)
T ss_pred ccccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEE
Confidence 44778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 021963 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (305)
Q Consensus 116 ~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~ 195 (305)
++|++++..|||||.|.+++.+|++|.+++++.+.++.+.|.+|+++-+|||+..+++.+.|+++|+.|.+|.|+++++.
T Consensus 117 iqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 117 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred EeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHH-hcCCCeEEEEecc
Q 021963 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE-KEGISCELIDLKT 274 (305)
Q Consensus 196 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~-~~Gi~~~vI~~~~ 274 (305)
.++++++|+++++||.|||...+++|.++|.+|++.++++|+|+|+|+|+||..++.++|++..-+ +.|++++|||+.+
T Consensus 197 scirdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkt 276 (362)
T KOG0525|consen 197 SCIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKT 276 (362)
T ss_pred eeccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeec
Confidence 999999999999999999999999999999999999999999999999999999999999987443 4599999999999
Q ss_pred ccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 275 LIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 275 i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
|-|+|++.+.++++|++++++-.|.-.
T Consensus 277 i~pwd~d~v~~sv~ktgrllisheapv 303 (362)
T KOG0525|consen 277 IIPWDKDTVEESVQKTGRLLISHEAPV 303 (362)
T ss_pred ccCccHHHHHHHHHhhceEEEeccCCc
Confidence 999999999999999999998877643
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.9e-49 Score=399.02 Aligned_cols=250 Identities=16% Similarity=0.162 Sum_probs=216.1
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchh-----hHhhhCCCcEEecchhHHHHHHHHHHHHh-CCC
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTG-----LADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGN 110 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~-----~~~~~gp~r~~~~gIaE~~~v~~AaGlA~-~G~ 110 (305)
+.+.++|++++++|.++++++++++++++|+..++ .+.. |+++| |+||||+||+||+|+++|+|||+ .|+
T Consensus 346 ~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~---~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~ 421 (653)
T TIGR00232 346 LQALATRKYSQNVLNAIANVLPELLGGSADLAPSN---LTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGF 421 (653)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccC---CcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCC
Confidence 35678999999999999999999999999997432 1333 88999 99999999999999999999999 789
Q ss_pred eEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHH
Q 021963 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQ 189 (305)
Q Consensus 111 ~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e 189 (305)
+||++ +|++|++|+++|||+. |+++ +|| .+|+++++..++.+|++| +++|+++||++|||+|+.|+|+.|
T Consensus 422 ~p~~~-tf~~F~~r~~~~ir~~-a~~~------lpV-~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E 492 (653)
T TIGR00232 422 KPYGG-TFLMFVDYARPAIRLA-ALMK------LPV-IYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNE 492 (653)
T ss_pred eEEEE-EhHHHHHHHHHHHHHH-HhcC------CCE-EEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 99999 5999999999999976 8887 677 888887777778777666 599999999999999999999999
Q ss_pred HHHHHHHhH-hCCCCEEEeccccccccCccCCCCCC-CcccCCceEEe--eeCCcEEEEEeChhHHHHHHHHHHHHhcCC
Q 021963 190 AKGLLLSCI-RDPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVI--REGSDITLVGWGAQLSIMEQACLDAEKEGI 265 (305)
Q Consensus 190 ~~~~l~~a~-~~~~Pv~i~~~~~l~~~~~~~~~~~~-~~~~~gk~~~~--~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi 265 (305)
++.++++++ +.++|+|||.+| ...+.+++.+ ..+..|+ +++ ++|.|++||++|+++..|++|++.|+++||
T Consensus 493 ~~~~~~~a~~~~~gP~~irl~r----~~~~~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi 567 (653)
T TIGR00232 493 TAAAWKYALESQDGPTALILSR----QNLPQLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENI 567 (653)
T ss_pred HHHHHHHHHhcCCCcEEEEEcC----CccCCCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCC
Confidence 999999999 568999996554 4444443332 4567786 666 678999999999999999999999999999
Q ss_pred CeEEEEeccccCCCHHH---HHHHHhccCcEEEEeCCccccC
Q 021963 266 SCELIDLKTLIPWDKET---VEASVRKTGRLLPRSSGYWRFW 304 (305)
Q Consensus 266 ~~~vI~~~~i~P~d~~~---i~~~~~~~~~vvvvEe~~~~~~ 304 (305)
+++|||++|++|||++. +.+.++++..+||+|+|+..+|
T Consensus 568 ~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~~g~ 609 (653)
T TIGR00232 568 KVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAADEW 609 (653)
T ss_pred cEEEEecccCcccccCCHHHHHHHhcccCceEEEecccHhHH
Confidence 99999999999997755 7777778889999999998887
No 19
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.8e-48 Score=392.79 Aligned_cols=254 Identities=15% Similarity=0.152 Sum_probs=214.1
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcc--cccchhhHhhhCCCcEEecchhHHHHHHHHHHHHh-CCCeEE
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNRAI 113 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~--~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~-~G~~p~ 113 (305)
..++.+|++++++|.++++++|+++++++|+..++. ++....|+++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus 352 ~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 352 PAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred ccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 356889999999999999999999999999974321 11237899999 99999999999999999999999 799999
Q ss_pred EEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHH
Q 021963 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (305)
Q Consensus 114 ~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~ 192 (305)
++ +|++|++|++||||+. |+++ +|| .+|+++++...|.||+|| .+||+++||.+|||+|+.|+|+.|+..
T Consensus 431 ~~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~ 501 (663)
T PRK12753 431 TA-TFLMFVEYARNAARMA-ALMK------ARQ-IMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAV 501 (663)
T ss_pred EE-ehHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHH
Confidence 99 5999999999999975 9888 677 888888877778877766 599999999999999999999999999
Q ss_pred HHHHhHh-CCCCEEEeccccccccCccCCCCCC---CcccCCceEEeeeCC---cEEEEEeChhHHHHHHHHHHHHhcCC
Q 021963 193 LLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAEKEGI 265 (305)
Q Consensus 193 ~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~~g~---dv~Iia~G~~~~~aleAa~~L~~~Gi 265 (305)
+++.+++ .++|+|| |+.|...+.++... ..+..|+ ++++++. |++||++|++++.|++|++.|+++||
T Consensus 502 ~~~~al~~~~gP~~i----rl~R~~~~~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi 576 (663)
T PRK12753 502 AWKLAIERHNGPTAL----ILSRQNLAQQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGR 576 (663)
T ss_pred HHHHHHhcCCCCEEE----EecCCCCCCCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCC
Confidence 9999998 5899999 55555555554332 3466676 7788754 99999999999999999999999999
Q ss_pred CeEEEEeccccCCCHHHH--HHHHhc--cCcEEEEeCCccccCC
Q 021963 266 SCELIDLKTLIPWDKETV--EASVRK--TGRLLPRSSGYWRFWC 305 (305)
Q Consensus 266 ~~~vI~~~~i~P~d~~~i--~~~~~~--~~~vvvvEe~~~~~~~ 305 (305)
+++|||++|+||||++.+ ++.+.. ..+.|+||+|....|+
T Consensus 577 ~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~ 620 (663)
T PRK12753 577 NVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWY 620 (663)
T ss_pred CcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHH
Confidence 999999999999999986 222111 2245999999777663
No 20
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=3.3e-48 Score=392.75 Aligned_cols=253 Identities=15% Similarity=0.160 Sum_probs=214.9
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCccc--ccchhhHhhhCC-CcEEecchhHHHHHHHHHHHHh-CCCeE
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVF--RCTTGLADRFGK-SRVFNTPLCEQGIVGFAIGLAA-MGNRA 112 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~--~~~~~~~~~~gp-~r~~~~gIaE~~~v~~AaGlA~-~G~~p 112 (305)
.++.++|++++++|.++++.+++++++++|+..++.+ +....|+++| | +||||+||+||||+++|+|||+ .|++|
T Consensus 352 ~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P 430 (661)
T PTZ00089 352 DKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFIP 430 (661)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCeE
Confidence 4567899999999999999999999999999743311 0114798999 8 8999999999999999999999 89999
Q ss_pred EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHH
Q 021963 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAK 191 (305)
Q Consensus 113 ~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~ 191 (305)
|++ +|++|++|++||||+. |+++ +|| .+++++++..++.||+|| .++|+++||++|||+|++|+|++|+.
T Consensus 431 ~~~-tf~~Fl~Ra~dqir~~-al~~------lpV-~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~ 501 (661)
T PTZ00089 431 FGA-TFLNFYGYALGAVRLA-ALSH------HPV-IYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETS 501 (661)
T ss_pred EEE-ehHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHH
Confidence 999 5999999999999865 9888 677 888888776678777666 59999999999999999999999999
Q ss_pred HHHHHhHh-CCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeC---CcEEEEEeChhHHHHHHHHHHHHhcCCCe
Q 021963 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREG---SDITLVGWGAQLSIMEQACLDAEKEGISC 267 (305)
Q Consensus 192 ~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g---~dv~Iia~G~~~~~aleAa~~L~~~Gi~~ 267 (305)
.+++++++ .++|+|||++| +..+.++..+..+..+++++++++ .|++||++|+++..|++|++.|++ |+++
T Consensus 502 ~~l~~al~~~~gP~~irl~R----~~~~~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~ 576 (661)
T PTZ00089 502 GAYALALANAKTPTILCLSR----QNTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNV 576 (661)
T ss_pred HHHHHHHHcCCCCEEEEecC----CCCCCcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCe
Confidence 99999994 57999996554 455555444444556777888874 799999999999999999999999 9999
Q ss_pred EEEEeccccCCCHHHHHHH---Hh-ccCcEEEEeCCccccC
Q 021963 268 ELIDLKTLIPWDKETVEAS---VR-KTGRLLPRSSGYWRFW 304 (305)
Q Consensus 268 ~vI~~~~i~P~d~~~i~~~---~~-~~~~vvvvEe~~~~~~ 304 (305)
+|||++|+||||++.+... +. +...++++|++...+|
T Consensus 577 ~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~ 617 (661)
T PTZ00089 577 RVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGW 617 (661)
T ss_pred EEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHH
Confidence 9999999999999986533 33 4456999999999888
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=2.1e-47 Score=386.13 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=208.6
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhH------hhhCCCcEEecchhHHHHHHHHHHHHhCC-C
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA------DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-N 110 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~------~~~gp~r~~~~gIaE~~~v~~AaGlA~~G-~ 110 (305)
.++++|++++++|.+++++|++++++++|++.+. .+..|. ++| |+||||+||+||+|+++|+|||+.| +
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~---~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~ 392 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSN---NTKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGF 392 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCcccc---CcccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999997432 133343 577 8999999999999999999999999 9
Q ss_pred eEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHH
Q 021963 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQ 189 (305)
Q Consensus 111 ~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e 189 (305)
+||++ +|++|+.|++|||++. ++++ +|+ .++..+.+...+.+|++| +.+|+++||++|||+|++|+|++|
T Consensus 393 ~pv~~-t~~~F~~r~~~qir~~-~~~~------~pv-~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e 463 (624)
T PRK05899 393 IPFGG-TFLVFSDYARNAIRLA-ALMK------LPV-IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANE 463 (624)
T ss_pred eEEEE-EcHHHHHHHHHHHHHH-HhcC------CCE-EEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHH
Confidence 99999 5999999999999985 7765 455 555554444456556555 699999999999999999999999
Q ss_pred HHHHHHHhHhC-CCCEEEeccccccccCccCCCCC--CCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCC
Q 021963 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGIS 266 (305)
Q Consensus 190 ~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~--~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~ 266 (305)
++.+++++++. ++|+|||++| ...+.++++ .+.++.|+ +++++|.|++||++|+++++|++|++.|+++||+
T Consensus 464 ~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~ 538 (624)
T PRK05899 464 TAAAWKYALERKDGPSALVLTR----QNLPVLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIK 538 (624)
T ss_pred HHHHHHHHHHcCCCCEEEEEeC----CCCCCcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCc
Confidence 99999999998 8999997664 333433322 25688886 7889999999999999999999999999999999
Q ss_pred eEEEEeccccCCCHHH---HHHHH-hccCcEEEEeCCccccC
Q 021963 267 CELIDLKTLIPWDKET---VEASV-RKTGRLLPRSSGYWRFW 304 (305)
Q Consensus 267 ~~vI~~~~i~P~d~~~---i~~~~-~~~~~vvvvEe~~~~~~ 304 (305)
++|||++||||||++. +...+ +....+|++|++...+|
T Consensus 539 ~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~ 580 (624)
T PRK05899 539 VRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGW 580 (624)
T ss_pred EEEEECCCcchhccCcHHHHhccccccccceEEEccCCccch
Confidence 9999999999999983 44545 44567899999888887
No 22
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-48 Score=370.53 Aligned_cols=250 Identities=22% Similarity=0.270 Sum_probs=219.6
Q ss_pred CCCCc-ccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCC-eE
Q 021963 35 GSGKS-LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RA 112 (305)
Q Consensus 35 ~~~~~-~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~-~p 112 (305)
..+.+ +++|++++++|.++++.+|+++.+++|+..++ .++-|.++| |+|||++||+||||+++|+|+|..|. +|
T Consensus 314 k~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st---~td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~P 389 (632)
T KOG0523|consen 314 KVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNST---LTDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIP 389 (632)
T ss_pred ccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCc---hhhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccc
Confidence 34444 89999999999999999999999999998654 357788899 99999999999999999999999998 99
Q ss_pred EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHHHHccCCCcEEEeeCCHHHHH
Q 021963 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAK 191 (305)
Q Consensus 113 ~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~ 191 (305)
|+. +|+.|++||+||+|+++-.+ .++ ..+.+|+++..|+||++|+ .||+++||++||++|+.|+|..|+.
T Consensus 390 f~~-tf~~F~trA~dqvr~~a~s~-------~~v-~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~ 460 (632)
T KOG0523|consen 390 FCG-TFAAFFTRAFDQVRMGALSQ-------ANV-IYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETE 460 (632)
T ss_pred hhH-HHHHHHHHhhhheeehhhcc-------CCc-EEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHH
Confidence 999 59999999999999876433 356 7778899999999999996 9999999999999999999999999
Q ss_pred HHHHHhHhCCC-CEEEeccccccccCccCCCCCCCcccCCceE-EeeeCC-cEEEEEeChhHHHHHHHHHHHHhcCCCeE
Q 021963 192 GLLLSCIRDPN-PVVFFEPKWLYRLSVEEVPEDDYMLPLSEAE-VIREGS-DITLVGWGAQLSIMEQACLDAEKEGISCE 268 (305)
Q Consensus 192 ~~l~~a~~~~~-Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~-~~~~g~-dv~Iia~G~~~~~aleAa~~L~~~Gi~~~ 268 (305)
.++..|++.++ |.++ ++.|+..+.++. +..+.+||.. +++++. ||++|++|+++++|++|++.|+++||+++
T Consensus 461 ~av~~Aa~~~~~p~i~----~~~r~~~~~~~~-~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vr 535 (632)
T KOG0523|consen 461 NAVATAANTKGTPSIR----TLSRQNLPIYNN-TEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVR 535 (632)
T ss_pred HHHHHHHhcCCCeeEE----EecCccccccCC-CchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceEE
Confidence 99999999755 8888 555666555533 3457788888 556666 99999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHhccC-cEEEEeCCccc
Q 021963 269 LIDLKTLIPWDKETVEASVRKTG-RLLPRSSGYWR 302 (305)
Q Consensus 269 vI~~~~i~P~d~~~i~~~~~~~~-~vvvvEe~~~~ 302 (305)
|+|++++||||..+|+++.+.++ ++.|+|+|+..
T Consensus 536 Vvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~ 570 (632)
T KOG0523|consen 536 VVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPA 570 (632)
T ss_pred EecccceeecchHHhhhhhcccceeEEEccCCCCC
Confidence 99999999999999999988885 88888888764
No 23
>PLN02790 transketolase
Probab=100.00 E-value=7e-47 Score=382.69 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=216.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCccc--ccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC--CCeEE
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVF--RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM--GNRAI 113 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~--~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~--G~~p~ 113 (305)
.+.++|+++++.|..+++.+++++++++|+..++.+ ..+..|+++|.|+||||+||+||+|+++|+|||+. |++||
T Consensus 342 ~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~ 421 (654)
T PLN02790 342 PADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPY 421 (654)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEE
Confidence 457899999999999999999999999999743211 12578988833899999999999999999999995 69999
Q ss_pred EEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHH
Q 021963 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (305)
Q Consensus 114 ~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~ 192 (305)
++ +|..|+.|+++|||+. |+++ +|| .+|+++++..++.||+|| .++|+++||+||||+|++|+|++|+..
T Consensus 422 ~~-tf~~F~~~~~~~ir~~-al~~------lpV-~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~ 492 (654)
T PLN02790 422 CA-TFFVFTDYMRAAMRLS-ALSE------AGV-IYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAG 492 (654)
T ss_pred EE-ecHHHHHHHHHHHHHH-HhcC------CCe-EEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHH
Confidence 99 5999999999999865 9888 677 888888766678777666 599999999999999999999999999
Q ss_pred HHHHhHh-CCCCEEEeccccccccCccCCCCC-CCcccCCceEEeeeC-----CcEEEEEeChhHHHHHHHHHHHHhcCC
Q 021963 193 LLLSCIR-DPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREG-----SDITLVGWGAQLSIMEQACLDAEKEGI 265 (305)
Q Consensus 193 ~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~~~~~~g-----~dv~Iia~G~~~~~aleAa~~L~~~Gi 265 (305)
+++++++ .++|+|||++| ...+.++.. ...++.|+ ++++++ .|++||++|++++.|++|++.|+++||
T Consensus 493 ~l~~al~~~~gP~~irl~R----~~~~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi 567 (654)
T PLN02790 493 AYKVAVTNRKRPTVLALSR----QKVPNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGK 567 (654)
T ss_pred HHHHHHHcCCCCEEEEecC----CCCCCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCC
Confidence 9999998 57999996554 445544432 24578887 556663 799999999999999999999999999
Q ss_pred CeEEEEeccccCCCHHHHH---HHH-hccCcEEEEeCCccccCC
Q 021963 266 SCELIDLKTLIPWDKETVE---ASV-RKTGRLLPRSSGYWRFWC 305 (305)
Q Consensus 266 ~~~vI~~~~i~P~d~~~i~---~~~-~~~~~vvvvEe~~~~~~~ 305 (305)
+++|||++|+||||++.+. +.+ ++++.+|++|+|...+|.
T Consensus 568 ~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~ 611 (654)
T PLN02790 568 KVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWE 611 (654)
T ss_pred ceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHH
Confidence 9999999999999998754 566 666789999999998883
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1.1e-46 Score=379.42 Aligned_cols=253 Identities=13% Similarity=0.156 Sum_probs=214.6
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcc--cccchhhHhhhCCCcEEecchhHHHHHHHHHHHHh-CCCeEEE
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNRAIA 114 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~--~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~-~G~~p~~ 114 (305)
.++++|++++++|.++++.+++++++++|+..++. ++....|.++| |+|||++||+||+|+++|+|||+ .|++||+
T Consensus 353 ~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~ 431 (663)
T PRK12754 353 AKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYT 431 (663)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEE
Confidence 45789999999999999999999999999974321 12256888899 99999999999999999999999 6899999
Q ss_pred EecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHH
Q 021963 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (305)
Q Consensus 115 ~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~ 193 (305)
+ +|++|+.|++||||++ |+++ +|| .+|++|++...+.+|++| .+||+++||++|||+|+.|+|+.|+..+
T Consensus 432 ~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~ 502 (663)
T PRK12754 432 S-TFLMFVEYARNAVRMA-ALMK------QRQ-VMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVA 502 (663)
T ss_pred E-eeHHHHHHHHHHHHHH-HHcC------CCe-EEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHH
Confidence 9 5999999999999986 8888 678 888898888888877766 5999999999999999999999999999
Q ss_pred HHHhHhC-CCCEEEeccccccccCccCCCCC---CCcccCCceEEeeeCC---cEEEEEeChhHHHHHHHHHHHHhcCCC
Q 021963 194 LLSCIRD-PNPVVFFEPKWLYRLSVEEVPED---DYMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAEKEGIS 266 (305)
Q Consensus 194 l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~---~~~~~~gk~~~~~~g~---dv~Iia~G~~~~~aleAa~~L~~~Gi~ 266 (305)
++++++. ++|+|| |+.|+..+.++.. ...+..|+ ++++++. |++||++|+++++|++|++.|+++||+
T Consensus 503 ~~~a~~~~~gP~yi----rl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~ 577 (663)
T PRK12754 503 WKYGVERQDGPTAL----ILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVK 577 (663)
T ss_pred HHHHHhCCCCCEEE----EeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCC
Confidence 9999987 799999 5666666655421 13466676 7778764 999999999999999999999999999
Q ss_pred eEEEEeccccCCCHHH--HHHHHhcc--CcEEEEeCCccccCC
Q 021963 267 CELIDLKTLIPWDKET--VEASVRKT--GRLLPRSSGYWRFWC 305 (305)
Q Consensus 267 ~~vI~~~~i~P~d~~~--i~~~~~~~--~~vvvvEe~~~~~~~ 305 (305)
++|||++|++|||++. .++.+-.. ...|++|.+...+|+
T Consensus 578 ~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~ 620 (663)
T PRK12754 578 ARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWY 620 (663)
T ss_pred cEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchh
Confidence 9999999999999972 33332222 245999999999995
No 25
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=9.5e-43 Score=296.76 Aligned_cols=165 Identities=58% Similarity=0.938 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecccCC-CcccccchhhHhhhCCC-cEEecchhHHHHHHHHHHHHhCCCeEEEEecccch
Q 021963 44 SAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121 (305)
Q Consensus 44 ~a~~~~L~~l~~~~~~iv~~~~D~~~-g~~~~~~~~~~~~~gp~-r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F 121 (305)
++++++|.+++++|++++++++|++. +|++..+++|+++| |+ ||||+||+||+||++|+|||+.|++||++++|++|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 47899999999999999999999973 45555679999999 88 99999999999999999999999999999679999
Q ss_pred HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCC
Q 021963 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP 201 (305)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~ 201 (305)
++|++|||++++|+++|+++++.+. |+++++++|.++.+|++|+++|+++||++|||+|++|+|+.|++.+++++++.+
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~ 158 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDD 158 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999998888 888888777677788889999999999999999999999999999999999999
Q ss_pred CCEEEeccc
Q 021963 202 NPVVFFEPK 210 (305)
Q Consensus 202 ~Pv~i~~~~ 210 (305)
+|+++++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999886
No 26
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=1.1e-40 Score=340.31 Aligned_cols=249 Identities=10% Similarity=0.050 Sum_probs=200.4
Q ss_pred CCcccHHHHHHHHHHHHHhc---CCCEEEEecccCCCccc----------------------ccchhhHhhhCCCcEEec
Q 021963 37 GKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVF----------------------RCTTGLADRFGKSRVFNT 91 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~---~~~iv~~~~D~~~g~~~----------------------~~~~~~~~~~gp~r~~~~ 91 (305)
++++++|.||+++|.+|++. +++||.+++|++.+... ..+..|+++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 47789999999999999996 99999999999842110 0125778899 9999999
Q ss_pred chhHHHHHH--HHHHHHhC----CCeEEEEecccch-HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCC-
Q 021963 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH- 163 (305)
Q Consensus 92 gIaE~~~v~--~AaGlA~~----G~~p~~~~~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~- 163 (305)
||+||+|++ +|+|+|++ |++||++ +|++| ++|++|||++++++++ .++ .++.++.+-..++.|.
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~-tya~F~~~Ra~Dqir~a~~~~~------~~v-~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYI-YYSMFGFQRIGDLAWAAGDQRA------RGF-LLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhhhhhHHHHHHHHHHhcC------CCe-EEEEECccccCCCCccc
Confidence 999999999 99999998 8899999 59999 5999999999999876 455 5554443334455455
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCC--CEEEeccccccccCc--cCCCCCCCcccCCce-EE
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPN--PVVFFEPKWLYRLSV--EEVPEDDYMLPLSEA-EV 234 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~--Pv~i~~~~~l~~~~~--~~~~~~~~~~~~gk~-~~ 234 (305)
||..+|+.++|++|||+|+.|+|+.|+..+++++++ ..+ |.|++ ++..+. +..| +++.+.+||. ++
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlr----l~ne~~~~~~~p-e~~~~~igKg~y~ 717 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYIT----VMNENYHQPAMP-EGAEEGILKGMYK 717 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE----eCCCCCCCCCCC-cccccccceEEEE
Confidence 446999999999999999999999999999999877 455 77784 321111 1222 3467888996 88
Q ss_pred eeeCC------cEEEEEeChhHHHHHHHHHHHHh-cCCCeEEEEeccccCCCHHHHHHHH---------hccCcEEEEeC
Q 021963 235 IREGS------DITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETVEASV---------RKTGRLLPRSS 298 (305)
Q Consensus 235 ~~~g~------dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI~~~~i~P~d~~~i~~~~---------~~~~~vvvvEe 298 (305)
+++|. |++|+++|.++++|++|++.|++ +||+++|+|++|+||||.+.+.... ++++.|+++|+
T Consensus 718 Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee 797 (891)
T PRK09405 718 LETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLK 797 (891)
T ss_pred eccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhc
Confidence 99876 89999999999999999999998 7999999999999999999986655 34445555555
Q ss_pred C
Q 021963 299 G 299 (305)
Q Consensus 299 ~ 299 (305)
+
T Consensus 798 ~ 798 (891)
T PRK09405 798 G 798 (891)
T ss_pred c
Confidence 5
No 27
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=7.8e-41 Score=341.39 Aligned_cols=247 Identities=15% Similarity=0.125 Sum_probs=205.0
Q ss_pred CCcccHHHHHHHHHHHHHhc---CCCEEEEecccCCCc----------ccc------------cchhhHhhhCCCcEEec
Q 021963 37 GKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGG----------VFR------------CTTGLADRFGKSRVFNT 91 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~---~~~iv~~~~D~~~g~----------~~~------------~~~~~~~~~gp~r~~~~ 91 (305)
++++|++.||+..|..|++. .++||.+.+|.+.+. .|. .+..+++.+ |+||+|+
T Consensus 487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~ 565 (889)
T TIGR03186 487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE 565 (889)
T ss_pred CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence 47799999999997666664 688999999987432 000 134566888 9999999
Q ss_pred chhHHHHHH--HHHHHHhC----CCeEEEEecccchH-HhHHHHHHHHHhhcccccCCCcccceeEEEcCCc-CCCCCCC
Q 021963 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG-AVGHGGH 163 (305)
Q Consensus 92 gIaE~~~v~--~AaGlA~~----G~~p~~~~~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g-~~~~~g~ 163 (305)
||+||||++ +|+|+|++ |++||+. +|++|. +|++|||+++ |+++ .++ .+|..+.+. ..+++|.
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~-tya~F~~~Ra~Dqir~a-~~~~------a~v-~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVHDLPMLPFYI-YYSMFGFQRIGDLIWAA-ADQR------ARG-FLIGATSGKTTLGGEGL 636 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhHhhhHHHHHHHH-hhcC------CCc-EEEEECCCccCCCCCcc
Confidence 999999999 99999998 8899999 599996 9999999988 7776 566 788777766 3566555
Q ss_pred CC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh------CCCCEEEeccccccccCc--cCCCCCC-CcccCCc--
Q 021963 164 YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSV--EEVPEDD-YMLPLSE-- 231 (305)
Q Consensus 164 ~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~------~~~Pv~i~~~~~l~~~~~--~~~~~~~-~~~~~gk-- 231 (305)
+| +.+|++++|++|||+|+.|+|+.|+..+++++++ .++|+|| |++|.+. |.++.++ ..+..|+
T Consensus 637 tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~~gi~k 712 (889)
T TIGR03186 637 QHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVRRGILK 712 (889)
T ss_pred cccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchhcchhh
Confidence 55 6999999999999999999999999999999887 5799999 5555544 4454443 2355554
Q ss_pred e-EEee----eCCcEEEEEeChhHHHHHHHHHHHHhc-CCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 232 A-EVIR----EGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 232 ~-~~~~----~g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
. ++++ +|+|++|+++|.++++|++|++.|+++ ||+++|+|++|+||||++.+. ++++++++++|+|
T Consensus 713 g~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh 784 (889)
T TIGR03186 713 GMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERP 784 (889)
T ss_pred eeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccc
Confidence 5 6677 578999999999999999999999997 999999999999999999986 7889999999998
No 28
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=7.6e-39 Score=328.48 Aligned_cols=293 Identities=22% Similarity=0.328 Sum_probs=245.3
Q ss_pred chHHHHHhhcC--CCCcccchhhHHHHHhh-cCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCC----------
Q 021963 3 SGLRRFVGSLS--RRNLSTACANKQLIQQH-DGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF---------- 69 (305)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~---------- 69 (305)
..|+.++..+. ++.|+.|+.++++++.+ .........++|.+|...++.+++++|++|+++++|++.
T Consensus 546 ~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl 625 (929)
T TIGR00239 546 KRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVL 625 (929)
T ss_pred HHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccc
Confidence 35788888876 89999999999999888 333333455899999999999999999999999999974
Q ss_pred -----CcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeE--EEEecccchHH---hHHHHHHHH-Hhhccc
Q 021963 70 -----GGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA--IAEIQFADYIF---PAFDQIVNE-AAKFRY 138 (305)
Q Consensus 70 -----g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p--~~~~~~~~F~~---ra~dqi~~~-~a~~~~ 138 (305)
|+.|+.+++|.++||+.|++|++|+|.+++|++.|+|+.|.+| +++++|++|+. .++|||.+. .+++++
T Consensus 626 ~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~ 705 (929)
T TIGR00239 626 HDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQ 705 (929)
T ss_pred cccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999999999999999877 59999999985 679999988 588886
Q ss_pred ccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHH--ccCCCcEEEeeCCHHHHHHHHH-HhHhC-CCCEEEeccccccc
Q 021963 139 RSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSPRQAKGLLL-SCIRD-PNPVVFFEPKWLYR 214 (305)
Q Consensus 139 ~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~--~~iP~l~V~~P~d~~e~~~~l~-~a~~~-~~Pv~i~~~~~l~~ 214 (305)
++ +||++.+.|..+.++.|||+...+++ .+.|||+|+.|++|.|++++++ ++++. ++|+++++||.|+|
T Consensus 706 ~s-------glv~~~p~G~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r 778 (929)
T TIGR00239 706 MS-------GLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLR 778 (929)
T ss_pred cc-------CeEEEecCcCCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhc
Confidence 64 68889998877778889999999998 7899999999999999999999 69986 99999999999998
Q ss_pred cCc-----cCCCCCCCcccCCceE-----EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHH
Q 021963 215 LSV-----EEVPEDDYMLPLSEAE-----VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVE 284 (305)
Q Consensus 215 ~~~-----~~~~~~~~~~~~gk~~-----~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~ 284 (305)
.+. .+++++.|..+++... +.+++.+.+|+++| +++.++++ ++++++|++++|||+++|+|||.++|.
T Consensus 779 ~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~ 856 (929)
T TIGR00239 779 HPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVK 856 (929)
T ss_pred CccccCccccCCCCCcccccccccccccccCccCCcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHH
Confidence 643 3566666666665422 22334455666666 77777777 667778999999999999999999999
Q ss_pred HHHhccC---cEEEEeCCcc--ccC
Q 021963 285 ASVRKTG---RLLPRSSGYW--RFW 304 (305)
Q Consensus 285 ~~~~~~~---~vvvvEe~~~--~~~ 304 (305)
++++|++ ++|++.|-.. +-|
T Consensus 857 ~sl~k~~~~~~~vw~qEep~n~Gaw 881 (929)
T TIGR00239 857 EVLQQYPNLKEIVWCQEEPLNMGAW 881 (929)
T ss_pred HHHHhcCCCCeEEEEeccCCCCCCH
Confidence 9999996 7888877644 445
No 29
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=6.3e-39 Score=330.34 Aligned_cols=288 Identities=21% Similarity=0.290 Sum_probs=247.5
Q ss_pred hHHHHHhhcC--CCCcccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccC-------------
Q 021963 4 GLRRFVGSLS--RRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG------------- 68 (305)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~------------- 68 (305)
.|+.++.++. |++|+.|+.++++++.+......+..++|..|...++.+++++|++|++.++|++
T Consensus 546 ~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~d 625 (924)
T PRK09404 546 RLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHD 625 (924)
T ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccc
Confidence 4777777665 8999999999999999988885566789999999999999999999999999997
Q ss_pred --CCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCe--EEEEecccchHH---hHHHHHHHHH-hhccccc
Q 021963 69 --FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR--AIAEIQFADYIF---PAFDQIVNEA-AKFRYRS 140 (305)
Q Consensus 69 --~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~--p~~~~~~~~F~~---ra~dqi~~~~-a~~~~~~ 140 (305)
.|+.|+.+++|.++||++|++|++|+|.+++|++.|+|+.|.+ |+++++|++|+. .++||+.+.. +++++++
T Consensus 626 q~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s 705 (924)
T PRK09404 626 QKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS 705 (924)
T ss_pred cCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc
Confidence 4567888999999999999999999999999999999999996 599999999986 6799999886 8887654
Q ss_pred CCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccC--CCcEEEeeCCHHHHHHHHHHhH-hC-CCCEEEeccccccccC
Q 021963 141 GNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHV--PGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLS 216 (305)
Q Consensus 141 ~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~i--P~l~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~l~~~~ 216 (305)
+||++.+.|..+.++.|||+...+++... |||+|+.|++|.|++++++.++ +. ++|++|++||.|+|.+
T Consensus 706 -------glv~~~p~G~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~ 778 (924)
T PRK09404 706 -------GLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHP 778 (924)
T ss_pred -------CeEEEecCcCCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCC
Confidence 68889998877778888899999999666 6999999999999999999865 65 6999999999999864
Q ss_pred c-----cCCCCCCCcccCCceEEeeeCCcE--EEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc
Q 021963 217 V-----EEVPEDDYMLPLSEAEVIREGSDI--TLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK 289 (305)
Q Consensus 217 ~-----~~~~~~~~~~~~gk~~~~~~g~dv--~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~ 289 (305)
. .+++.+.+..++++.. .++++|+ +|||||.+++.++++++.+. ..+++|||+++|+|||.++|.++++|
T Consensus 779 ~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k 855 (924)
T PRK09404 779 LAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAK 855 (924)
T ss_pred CCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHh
Confidence 2 2333334545566655 5677889 79999999999999998553 34999999999999999999999999
Q ss_pred cC---cEEEEeCCcc
Q 021963 290 TG---RLLPRSSGYW 301 (305)
Q Consensus 290 ~~---~vvvvEe~~~ 301 (305)
++ ++|+|+|...
T Consensus 856 ~~~~~~~v~vqEe~~ 870 (924)
T PRK09404 856 YPNAKEVVWCQEEPK 870 (924)
T ss_pred cCCCCeEEEEeeCCC
Confidence 84 8888888543
No 30
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=6.1e-38 Score=321.37 Aligned_cols=250 Identities=14% Similarity=0.132 Sum_probs=199.4
Q ss_pred CCcccHHHHHHHHHHHHHhc---CCCEEEEecccCCCcc----cc------------------cchhhHhhhCCCcEEec
Q 021963 37 GKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGV----FR------------------CTTGLADRFGKSRVFNT 91 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~---~~~iv~~~~D~~~g~~----~~------------------~~~~~~~~~gp~r~~~~ 91 (305)
++++++|.||+++|.+|++. +++||.+++|++.+.. |. .+..|+++| |+|||++
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~ 578 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEE 578 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEec
Confidence 47799999999999999988 9999999999873210 00 124566889 9999999
Q ss_pred chhHHHHHH--HHHHHHhC----CCeEEEEecccch-HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCC
Q 021963 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (305)
Q Consensus 92 gIaE~~~v~--~AaGlA~~----G~~p~~~~~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~ 164 (305)
||+||+|++ +|+|+|++ |++||++ +|+.| .+|++||++++++++. .++ .++.++.+-..+++|.+
T Consensus 579 GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~~------~~v-lig~T~gg~tlg~dG~T 650 (896)
T PRK13012 579 GITEAGAISSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQRA------RGF-LLGATAGRTTLGGEGLQ 650 (896)
T ss_pred chhhhhhhHHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhccc------CCe-EEEEeCcccccCCCCCC
Confidence 999999999 99999877 6799999 59999 5999999999988665 344 55544444355666666
Q ss_pred C-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----C--CCCEEEeccccccccCc--cCCCCC-CCcccCCceEE
Q 021963 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D--PNPVVFFEPKWLYRLSV--EEVPED-DYMLPLSEAEV 234 (305)
Q Consensus 165 h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~--~~Pv~i~~~~~l~~~~~--~~~~~~-~~~~~~gk~~~ 234 (305)
| ..+|++++|++||++|+.|+|+.|+..+++.+++ . +.|+|| |++|.+. |.++++ +..+..|++.+
T Consensus 651 HQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI----rL~r~~~~~p~~~~~~~~~i~kG~y~l 726 (896)
T PRK13012 651 HQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL----TVMNENYAQPALPEGAEEGILKGMYRL 726 (896)
T ss_pred CcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE----EecCCCCCCCCCCccchhccccCcEEE
Confidence 6 5999999999999999999999999999999884 2 689999 6665554 344433 34566777444
Q ss_pred e--eeCCcEEEEEeChhHHHHHHHHHHHHhc-CCCeEEEEeccccCCCHHHH-------------------HHHHhc-cC
Q 021963 235 I--REGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETV-------------------EASVRK-TG 291 (305)
Q Consensus 235 ~--~~g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~~vI~~~~i~P~d~~~i-------------------~~~~~~-~~ 291 (305)
. ++|.+++|+++|+++++|++|++.|+++ ||+++|+|++|++|||++.+ .+.+.+ ..
T Consensus 727 ~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~ 806 (896)
T PRK13012 727 AAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRG 806 (896)
T ss_pred eccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCC
Confidence 2 3467999999999999999999999999 99999999999999999966 333444 35
Q ss_pred cEEEEeCC
Q 021963 292 RLLPRSSG 299 (305)
Q Consensus 292 ~vvvvEe~ 299 (305)
.+|+++++
T Consensus 807 p~Va~~D~ 814 (896)
T PRK13012 807 PVVAATDY 814 (896)
T ss_pred CeEEecch
Confidence 77888886
No 31
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=3.2e-37 Score=260.49 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHH
Q 021963 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123 (305)
Q Consensus 44 ~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ 123 (305)
++++++|.+++++|++++++++|++.++ .+++|.++| |+||+|+||+|++|+++|+|+|+.|++|++++ |+.|++
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~---~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~-~~~f~~ 75 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGST---GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFLQ 75 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCC---CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEE-CHHHHH
Confidence 3689999999999999999999998433 579999999 99999999999999999999999999999996 787899
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPN 202 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~ 202 (305)
|++|||++++|+++ +|+ .+++.+.+...+.+|++| +++|+++++++||++|+.|+|++|++.+++++++.++
T Consensus 76 ra~dqi~~~~a~~~------~pv-~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~ 148 (156)
T cd07033 76 RAYDQIRHDVALQN------LPV-KFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDG 148 (156)
T ss_pred HHHHHHHHHHhccC------CCe-EEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCC
Confidence 99999999999887 455 555444334444566655 7999999999999999999999999999999999999
Q ss_pred CEEEeccc
Q 021963 203 PVVFFEPK 210 (305)
Q Consensus 203 Pv~i~~~~ 210 (305)
|+|||.+|
T Consensus 149 P~~irl~~ 156 (156)
T cd07033 149 PVYIRLPR 156 (156)
T ss_pred CEEEEeeC
Confidence 99997653
No 32
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.4e-37 Score=266.69 Aligned_cols=169 Identities=43% Similarity=0.643 Sum_probs=137.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCC--CeEEEE
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAE 115 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G--~~p~~~ 115 (305)
++++||+|++++|.+++++|++++++++|++. +++.....+...+||+||+|+||+|++|+++|+|+|+.| ++|++.
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~-~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~ 79 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGG-GTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVES 79 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHH-HHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCc-chhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEe
Confidence 46899999999999999999999999999983 333334455566667899999999999999999999999 556665
Q ss_pred ecccchHH----hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHH
Q 021963 116 IQFADYIF----PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAK 191 (305)
Q Consensus 116 ~~~~~F~~----ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~ 191 (305)
+|++|+. |+++|+++++++++ +++ +++...+.+....+++||+++|+++++++||++|++|+|+.|++
T Consensus 80 -~f~~F~~~~q~r~~~~~~~~~~~~~------~~v-~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~ 151 (178)
T PF02779_consen 80 -TFADFLTPAQIRAFDQIRNDMAYGQ------LPV-PVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAK 151 (178)
T ss_dssp -EEGGGGGGGHHHHHHHHHHHHHHHT------S-E-EEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHH
T ss_pred -eccccccccchhhhhhhhhhhhccc------cee-cceeecCcccccccccccccccccccccccccccccCCCHHHHH
Confidence 7999999 99999999999887 577 74433333344456677789999999999999999999999999
Q ss_pred HHHHHhHh--CCCCEEEecccccccc
Q 021963 192 GLLLSCIR--DPNPVVFFEPKWLYRL 215 (305)
Q Consensus 192 ~~l~~a~~--~~~Pv~i~~~~~l~~~ 215 (305)
.+++++++ .++|+|||++|.+++.
T Consensus 152 ~~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 152 GLLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 99999999 7899999999877653
No 33
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=281.80 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=217.7
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcc--cccchhhH-hhhCCCcEEecchhHHHHHHHHHHHHhCC-CeEE
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLA-DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAI 113 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~--~~~~~~~~-~~~gp~r~~~~gIaE~~~v~~AaGlA~~G-~~p~ 113 (305)
..+.+|++.+++|..+++..|+++..++|++.+.. ++....|. +.| ++|++.+||.|.+|.+++.|||+.| ++||
T Consensus 352 ~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~py 430 (663)
T COG0021 352 KSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPY 430 (663)
T ss_pred cccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceee
Confidence 34789999999999999999999999999984321 22234454 567 7999999999999999999999985 5999
Q ss_pred EEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHHHHccCCCcEEEeeCCHHHHHH
Q 021963 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKG 192 (305)
Q Consensus 114 ~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~ 192 (305)
.. ||..|+.++..++|. .|+++ +++ ..|++|++...|+||+||+ +|+++.+|++||+.|+.|+|+.|...
T Consensus 431 gg-TFlvFsdY~r~AiRl-aALm~------l~~-~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~ 501 (663)
T COG0021 431 GG-TFLVFSDYARPAVRL-AALMG------LPV-IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAA 501 (663)
T ss_pred cc-eehhhHhhhhHHHHH-HHhcC------CCe-EEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHH
Confidence 99 599999999999995 56666 677 8899999999999999997 89999999999999999999999999
Q ss_pred HHHHhHhC-CCCEEEeccccccccCccCCCCCCCcccCCceEEeee----CCcEEEEEeChhHHHHHHHHHHHHhcCCCe
Q 021963 193 LLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIRE----GSDITLVGWGAQLSIMEQACLDAEKEGISC 267 (305)
Q Consensus 193 ~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~----g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~ 267 (305)
+++.|++. ++|+++ .|.|+..|.++..+.......++++++ +.|++||++|+.+..|++|++.|+++|+++
T Consensus 502 aw~~Al~~~~gPt~L----iltRQnlp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~v 577 (663)
T COG0021 502 AWKYALERKDGPTAL----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKV 577 (663)
T ss_pred HHHHHHhcCCCCeEE----EEecCCCCccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCce
Confidence 99999995 999999 788898888876544444556777776 579999999999999999999999889999
Q ss_pred EEEEeccccCCCHHH--HHHHHhcc--CcEEEEeCCccccCC
Q 021963 268 ELIDLKTLIPWDKET--VEASVRKT--GRLLPRSSGYWRFWC 305 (305)
Q Consensus 268 ~vI~~~~i~P~d~~~--i~~~~~~~--~~vvvvEe~~~~~~~ 305 (305)
+||+++|...|+++. -++++-.. .+.|.||-+...+|+
T Consensus 578 rVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ 619 (663)
T COG0021 578 RVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWY 619 (663)
T ss_pred EEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchh
Confidence 999999999999864 33444433 347899999999996
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=4.9e-31 Score=225.11 Aligned_cols=154 Identities=40% Similarity=0.528 Sum_probs=129.5
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEecccCCCcccccchhhHhhhCCC-------cEEecchhHHHHHHHHHHHHhCCCeE
Q 021963 41 NLYSAINQALHIALETDP-RAYVFGEDVGFGGVFRCTTGLADRFGKS-------RVFNTPLCEQGIVGFAIGLAAMGNRA 112 (305)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~-~iv~~~~D~~~g~~~~~~~~~~~~~gp~-------r~~~~gIaE~~~v~~AaGlA~~G~~p 112 (305)
+++++++++|.+++++|+ +++++++|++.++. +. ..+.| |+ ||+|+||+|++|+++|+|+|+.|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~---~~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTG---LD-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcC---CC-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 479999999999999955 99999999974321 12 13455 45 59999999999999999999999999
Q ss_pred EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCC-cCCCCCC-CCCCchHHHHHccCCCcEEEeeCCHHHH
Q 021963 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVGHGG-HYHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (305)
Q Consensus 113 ~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~-g~~~~~g-~~hs~~d~a~~~~iP~l~V~~P~d~~e~ 190 (305)
++++ |+.|+.|++||++++++++ ++ ++|+++++ +..+.+| +||+++|+++++++||++|+.|+|++|+
T Consensus 76 i~~~-~~~f~~~a~~~~~~~~~~~--------~~-~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 76 VVAI-FFTFFDRAKDQIRSDGAMG--------RV-PVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEEe-eHHHHHHHHHHHHHhCccc--------CC-CEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 9995 9999999999999988753 34 77888854 5556645 5778999999999999999999999999
Q ss_pred HHHHHHhHhC-CCCEEEecc
Q 021963 191 KGLLLSCIRD-PNPVVFFEP 209 (305)
Q Consensus 191 ~~~l~~a~~~-~~Pv~i~~~ 209 (305)
+.+++++++. ++|+|||.+
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~ 165 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLE 165 (168)
T ss_pred HHHHHHHHhCCCCCEEEEec
Confidence 9999999976 689999654
No 35
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.91 E-value=3.2e-22 Score=189.50 Aligned_cols=232 Identities=19% Similarity=0.159 Sum_probs=168.9
Q ss_pred CCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhc
Q 021963 57 DPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKF 136 (305)
Q Consensus 57 ~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~ 136 (305)
+.+++..=+=.+.+.....+..+.+++ ...|++ ..+|.+++++|.|+|.+|.|.++. |.++.+..+++.+-. ++..
T Consensus 21 g~~~~a~YPiTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~~-a~~~ 96 (352)
T PRK07119 21 GCRCYFGYPITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTS-SSSPGISLKQEGISY-LAGA 96 (352)
T ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEee-cCcchHHHHHHHHHH-HHHc
Confidence 455554433333322211223334456 367888 799999999999999999999999 588888888898763 3333
Q ss_pred ccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHcc-----CCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEe
Q 021963 137 RYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCH-----VPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (305)
Q Consensus 137 ~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~-----iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 207 (305)
. +|+ .+++..|++++.+. ++..|+|.-+.+. --++.|+.|+|++|++++..+|++ ++.||+++
T Consensus 97 e------~P~-v~v~v~R~~p~~g~-t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~ 168 (352)
T PRK07119 97 E------LPC-VIVNIMRGGPGLGN-IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVL 168 (352)
T ss_pred c------CCE-EEEEeccCCCCCCC-CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3 566 66666777665543 4446888866542 225889999999999999999997 58999999
Q ss_pred ccccccccCcc-CCC--------CCCCccc-CC------------------------------------ceEEe-eeCCc
Q 021963 208 EPKWLYRLSVE-EVP--------EDDYMLP-LS------------------------------------EAEVI-REGSD 240 (305)
Q Consensus 208 ~~~~l~~~~~~-~~~--------~~~~~~~-~g------------------------------------k~~~~-~~g~d 240 (305)
.+.++.+...+ .++ .+++.++ .+ ..+.. .++.|
T Consensus 169 ~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad 248 (352)
T PRK07119 169 GDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAE 248 (352)
T ss_pred cchhhhCceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCC
Confidence 98887654211 011 0111000 00 00111 14679
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
++||++|+++..+++|++.|+++|+++++|+++++||||.+.|.++++++++|+|+|+|.
T Consensus 249 ~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n~ 308 (352)
T PRK07119 249 LVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMSM 308 (352)
T ss_pred EEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999999999999999999999984
No 36
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.89 E-value=3.2e-21 Score=184.02 Aligned_cols=203 Identities=16% Similarity=0.200 Sum_probs=157.7
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h 165 (305)
..|+++- +|.+++++|.|+|.+|.|.++. |.++.+....|++-..++ .. +|+ -++...|+|++++.++.+
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta-TSg~Gl~lm~E~~~~a~~-~e------~P~-Viv~~~R~gp~tg~p~~~ 118 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTA-TSGPGFSLMQENIGYAAM-TE------TPC-VIVNVQRGGPSTGQPTKP 118 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEee-cCCCcHHHHHHHHHHHHH-cC------CCE-EEEEeecCCCCCCCCCCc
Confidence 5688875 9999999999999999999999 588877788888864333 22 455 555567888877777777
Q ss_pred CchHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-------CCC-------C
Q 021963 166 SQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP-------E 222 (305)
Q Consensus 166 s~~d~a~~~-----~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~-------~~~-------~ 222 (305)
+|.|+-..+ ..| ..|++|+|++|++++...|++ ++.||+++.+.++++...+ .++ .
T Consensus 119 ~q~D~~~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~ 197 (376)
T PRK08659 119 AQGDMMQARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPK 197 (376)
T ss_pred CcHHHHHHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCC
Confidence 888886655 343 469999999999999999997 5899999988776643211 000 0
Q ss_pred ------CCCc-----cc----CC--c------------------------------------------eEEee-eCCcEE
Q 021963 223 ------DDYM-----LP----LS--E------------------------------------------AEVIR-EGSDIT 242 (305)
Q Consensus 223 ------~~~~-----~~----~g--k------------------------------------------~~~~~-~g~dv~ 242 (305)
.+|. ++ .| . .+... ++.|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~ 277 (376)
T PRK08659 198 VPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVV 277 (376)
T ss_pred CCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEE
Confidence 0010 00 01 0 01111 468999
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
||++|+++..+++|++.|+++|++++++++++++|||.+.|.+.+++.++|+|||+|
T Consensus 278 iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~ 334 (376)
T PRK08659 278 VVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN 334 (376)
T ss_pred EEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999998
No 37
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.87 E-value=2.3e-20 Score=177.85 Aligned_cols=204 Identities=16% Similarity=0.095 Sum_probs=157.9
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h 165 (305)
..|+++ .+|.+++++|.|+|++|.|.++. |.++.+....|++-... ... +|+ -++...|+|++++.++..
T Consensus 48 ~~~vq~-E~E~aA~~~a~GAs~aG~Ra~ta-TSg~G~~lm~E~~~~a~-~~e------~P~-V~~~~~R~GpstG~p~~~ 117 (375)
T PRK09627 48 GTFIQM-EDEISGISVALGASMSGVKSMTA-SSGPGISLKAEQIGLGF-IAE------IPL-VIVNVMRGGPSTGLPTRV 117 (375)
T ss_pred CEEEEc-CCHHHHHHHHHHHHhhCCCEEee-cCCchHHHHhhHHHHHH-hcc------CCE-EEEEeccCCCcCCCCCcc
Confidence 456665 79999999999999999999999 58887777888877432 222 454 444567889888777777
Q ss_pred CchHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-------CCC--------
Q 021963 166 SQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP-------- 221 (305)
Q Consensus 166 s~~d~a~~~-----~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~-------~~~-------- 221 (305)
.|.|+...+ -.|.+ |++|+|++|++++..+|++ ++.||+++.+.++++...+ .++
T Consensus 118 ~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~ 196 (375)
T PRK09627 118 AQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKE 196 (375)
T ss_pred chHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhcccccccccc
Confidence 899987766 45666 9999999999999999997 5899999988877643211 110
Q ss_pred -C---CCC-cccC-------------------------------------------------------CceEEee-eCCc
Q 021963 222 -E---DDY-MLPL-------------------------------------------------------SEAEVIR-EGSD 240 (305)
Q Consensus 222 -~---~~~-~~~~-------------------------------------------------------gk~~~~~-~g~d 240 (305)
. ++| .++. ...+... ++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd 276 (375)
T PRK09627 197 FDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAE 276 (375)
T ss_pred ccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCC
Confidence 0 000 0000 0011111 3478
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
++||++|++...+++|++.|+++|++++++.+++++|||.+.|++.+++.++|+|||+|+
T Consensus 277 ~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~ 336 (375)
T PRK09627 277 ILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM 336 (375)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh
Confidence 999999999999999999999999999999999999999999999999999999999996
No 38
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.85 E-value=6e-20 Score=185.27 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=153.1
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h 165 (305)
+-++.+..+|.+++++|.|+|++|.|.++. |.++.+..+.|++.. +++.. .+. ++|++....+ +...++.
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~-ts~~Gl~~~~e~l~~-~~~~g------~~~-~iV~~~~~~~-gp~~~~~ 115 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCT-MKHVGLNVAADPLMT-LAYTG------VKG-GLVVVVADDP-SMHSSQN 115 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEE-ccCCchhhhHHHhhh-hhhhc------CcC-ceEEEEccCC-CCccchh
Confidence 356788899999999999999999999999 589988899999985 55443 244 5665543332 2224444
Q ss_pred CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc----CCCC----CCCcccC----
Q 021963 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE----EVPE----DDYMLPL---- 229 (305)
Q Consensus 166 s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~----~~~~----~~~~~~~---- 229 (305)
.|+|.-+.+. .++.|+.|+|++|++++..+|++ ++.||+++.+.++.+...+ +.+. .++..+.
T Consensus 116 ~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~ 194 (595)
T TIGR03336 116 EQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYV 194 (595)
T ss_pred hHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcC
Confidence 6888766665 47889999999999999999998 5999999988887654211 1000 0000000
Q ss_pred ------------------------Cc--eE-EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHH
Q 021963 230 ------------------------SE--AE-VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKET 282 (305)
Q Consensus 230 ------------------------gk--~~-~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~ 282 (305)
.. +. +..++.|++||++|+++..+++|+++| |++++|++++++||||++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~ 271 (595)
T TIGR03336 195 MVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGL 271 (595)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHH
Confidence 00 11 122467999999999999999988765 9999999999999999999
Q ss_pred HHHHHhccCcEEEEeCCcc
Q 021963 283 VEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 283 i~~~~~~~~~vvvvEe~~~ 301 (305)
|.+.++++++|+|||||..
T Consensus 272 i~~~~~~~~~vivvEe~~~ 290 (595)
T TIGR03336 272 VEEFLSGVEEVLVVEELEP 290 (595)
T ss_pred HHHHHhcCCeEEEEeCCcc
Confidence 9999999999999999974
No 39
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.83 E-value=3.6e-19 Score=178.22 Aligned_cols=208 Identities=20% Similarity=0.229 Sum_probs=159.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h 165 (305)
+-.+....+|.+++++|.|+|++|.|.++. |.++.+..+.|.+- .++... +|+ -++...|+|++++.++++
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~-~a~~~~------~P~-Vi~~~~R~gpstg~~t~~ 307 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTA-TSGPGFALMTEALG-LAGMTE------TPL-VIVDVQRGGPSTGLPTKT 307 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeec-CCCCChhHhHHHHh-HHHhcc------CCE-EEEEcccCCCCCCCCCCc
Confidence 356667799999999999999999999999 58887778889884 333332 455 555567888887777777
Q ss_pred CchHHHHHccCC----CcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-------CCC--------C
Q 021963 166 SQSPEAFFCHVP----GLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP--------E 222 (305)
Q Consensus 166 s~~d~a~~~~iP----~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~-------~~~--------~ 222 (305)
.|.|+-+.+.-- ++.|++|+|++|++++..+|++ ++.||+++.+..+.+...+ .++ .
T Consensus 308 eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 387 (562)
T TIGR03710 308 EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLE 387 (562)
T ss_pred cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhccccccccccc
Confidence 899987766432 4689999999999999999997 5899999987776542110 000 0
Q ss_pred --CCC---c--------c-cCC---------------------------------------------ceEEee-eCCcEE
Q 021963 223 --DDY---M--------L-PLS---------------------------------------------EAEVIR-EGSDIT 242 (305)
Q Consensus 223 --~~~---~--------~-~~g---------------------------------------------k~~~~~-~g~dv~ 242 (305)
.+| . . ..| ..+... ++.|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~ 467 (562)
T TIGR03710 388 PEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVL 467 (562)
T ss_pred CCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEE
Confidence 000 0 0 011 001111 356899
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 243 Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
||++|++...+++|++.|+++|++++++.+++++|||.+.|.+.+++.++|+|+|+|+.+
T Consensus 468 iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~G 527 (562)
T TIGR03710 468 VIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATG 527 (562)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhh
Confidence 999999999999999999999999999999999999999999999999999999999653
No 40
>PRK05261 putative phosphoketolase; Provisional
Probab=99.83 E-value=1.4e-18 Score=176.65 Aligned_cols=250 Identities=14% Similarity=0.116 Sum_probs=179.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCC-EEEEecccCCCcccccchhhH----------------hhhCCCcEEecchhHHHHHH
Q 021963 38 KSLNLYSAINQALHIALETDPR-AYVFGEDVGFGGVFRCTTGLA----------------DRFGKSRVFNTPLCEQGIVG 100 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~-iv~~~~D~~~g~~~~~~~~~~----------------~~~gp~r~~~~gIaE~~~v~ 100 (305)
...++|. +++.|.++++.||+ +++.++|...+. +.-..|. ... .+|+++ +++|.+|.|
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SN--rl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g 463 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASN--RLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEG 463 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhh--ccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHH
Confidence 4567888 99999999999999 889999986322 1111121 122 379999 999999999
Q ss_pred HHHHHHhCCCeEEEEecccchH---HhHHHHH----HHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC----chH
Q 021963 101 FAIGLAAMGNRAIAEIQFADYI---FPAFDQI----VNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS----QSP 169 (305)
Q Consensus 101 ~AaGlA~~G~~p~~~~~~~~F~---~ra~dqi----~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs----~~d 169 (305)
++.|+++.|.+++++ +|-.|+ ..++.|+ |.. ....|+.. ...+ .+|+++..-..+++|.+|+ ++-
T Consensus 464 ~~~Gy~LtG~~~~~~-sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~-~~sL-n~l~Ts~~~~qghNG~THQ~Pg~ie~ 539 (785)
T PRK05261 464 WLEGYLLTGRHGFFS-SYEAFIHIVDSMFNQHAKWLKVA-REIPWRKP-IPSL-NYLLTSHVWRQDHNGFSHQDPGFIDH 539 (785)
T ss_pred HHHHHHhcCCCccee-cHHHHHHHHHHHHHHHHHHHHHH-hhcccCCC-Ccce-eEEeecceeecCCCCCCCCCchHHHH
Confidence 999999999999999 699998 6777887 533 22223211 1122 4555655556788888885 355
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEEeccccccccCccCCCCCC---CcccCCceEEee-e-----CC
Q 021963 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIR-E-----GS 239 (305)
Q Consensus 170 ~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~-~-----g~ 239 (305)
++-++. |++.|+.|+|+.|+..+++.|++. ++|.+| .++|++.+.....+ ..+..|.+.+.. + +.
T Consensus 540 l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I----vlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~p 614 (785)
T PRK05261 540 VANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI----VAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEP 614 (785)
T ss_pred HHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE----EEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCC
Confidence 566777 999999999999999999999985 789999 56666666543322 234456444331 1 35
Q ss_pred cEEEEEeChhHHH-HHHHHHHHHhc--CCCeEEEEeccc--------cC--CCHHHHHHHHhccCcEEEEeCCcc
Q 021963 240 DITLVGWGAQLSI-MEQACLDAEKE--GISCELIDLKTL--------IP--WDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 240 dv~Iia~G~~~~~-aleAa~~L~~~--Gi~~~vI~~~~i--------~P--~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
|++|+|+|+.+.. |++|++.|+++ |++++||++.-+ .| ++.+.+.++.-..+.||+.=-+|+
T Consensus 615 DvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~hgyp 689 (785)
T PRK05261 615 DVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGYP 689 (785)
T ss_pred CEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeCCCH
Confidence 9999999999988 99999999999 999999999431 11 334556566655555665544443
No 41
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.82 E-value=3.3e-18 Score=165.02 Aligned_cols=230 Identities=14% Similarity=0.097 Sum_probs=165.3
Q ss_pred cCCCEEEEecccCCCcccccchhhHhhhCCC-----cEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHH
Q 021963 56 TDPRAYVFGEDVGFGGVFRCTTGLADRFGKS-----RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIV 130 (305)
Q Consensus 56 ~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~-----r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~ 130 (305)
.+.+++..=+=++.+. ..+.+.+.. |+ .|+++ .+|.+++++|.|+|.+|.|.++. |.++.+..+.|.|-
T Consensus 26 Ag~~~~a~YPITPsTe---I~e~la~~~-~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~Ta-TS~~Gl~lm~E~l~ 99 (407)
T PRK09622 26 AQIDVVAAYPITPSTP---IVQNYGSFK-ANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVATA-TSSQGLALMVEVLY 99 (407)
T ss_pred hCCCEEEEECCCCccH---HHHHHHHHh-hCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEEee-cCcchHHHHhhHHH
Confidence 3555555434333222 234444433 32 46664 69999999999999999999999 58888888889887
Q ss_pred HHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC------CCCE
Q 021963 131 NEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD------PNPV 204 (305)
Q Consensus 131 ~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~------~~Pv 204 (305)
. ++... +|+ -++...|+++++ ..++..+.|+-..| -.++.+++|+|++|++++...|++. +.||
T Consensus 100 ~-aa~~~------~P~-V~~~~~R~~~~~-~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pv 169 (407)
T PRK09622 100 Q-ASGMR------LPI-VLNLVNRALAAP-LNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPV 169 (407)
T ss_pred H-HHHhh------CCE-EEEEeccccCCC-cCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCE
Confidence 4 44433 455 455556777653 44444578876665 4579999999999999999999983 7999
Q ss_pred EEeccccc-ccc--Ccc--C---C----CC-CCCc----------cc---------------------------------
Q 021963 205 VFFEPKWL-YRL--SVE--E---V----PE-DDYM----------LP--------------------------------- 228 (305)
Q Consensus 205 ~i~~~~~l-~~~--~~~--~---~----~~-~~~~----------~~--------------------------------- 228 (305)
+++.+..+ ++. ... + + ++ .++. ..
T Consensus 170 iv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (407)
T PRK09622 170 IVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDF 249 (407)
T ss_pred EEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHH
Confidence 99988774 331 100 0 0 00 0000 00
Q ss_pred ---CC----ceEEe-eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 229 ---LS----EAEVI-REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 229 ---~g----k~~~~-~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
.| ..+.. .++.|++||++|+++..+++|++.|+++|+++++|++++++|||.+.|.+.++++++|+|+|++.
T Consensus 250 ~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~ 329 (407)
T PRK09622 250 AKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSS 329 (407)
T ss_pred HHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCC
Confidence 00 01111 13678999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 021963 301 W 301 (305)
Q Consensus 301 ~ 301 (305)
.
T Consensus 330 ~ 330 (407)
T PRK09622 330 P 330 (407)
T ss_pred C
Confidence 5
No 42
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.82 E-value=5.9e-18 Score=162.03 Aligned_cols=201 Identities=15% Similarity=0.140 Sum_probs=153.2
Q ss_pred ecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchH
Q 021963 90 NTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSP 169 (305)
Q Consensus 90 ~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d 169 (305)
-...+|.+++++|.|+|++|.|.++. |.++.+..+.|.+.. ++... +|+ -++...|+++ +..+++..|.|
T Consensus 53 ~~~E~E~aA~~~aiGAs~aGaRa~Ta-TSg~Gl~lm~E~l~~-aa~~~------lPi-Vi~~~~R~~p-~~~~~~~~q~D 122 (390)
T PRK08366 53 VPVESEHSAMAACIGASAAGARAFTA-TSAQGLALMHEMLHW-AAGAR------LPI-VMVDVNRAMA-PPWSVWDDQTD 122 (390)
T ss_pred EEeCCHHHHHHHHHHHHhhCCCeEee-eCcccHHHHhhHHHH-HHhcC------CCE-EEEEeccCCC-CCCCCcchhhH
Confidence 34579999999999999999999999 588888889998874 44443 455 4455567777 44555556889
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccc-cccccCcc-C----------CC-----------C
Q 021963 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPK-WLYRLSVE-E----------VP-----------E 222 (305)
Q Consensus 170 ~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~-~l~~~~~~-~----------~~-----------~ 222 (305)
+-..+.- ++.+++|+|++|++++...|++ ++.||+++.+. ++.+...+ . ++ +
T Consensus 123 ~~~~~d~-g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~ 201 (390)
T PRK08366 123 SLAQRDT-GWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFD 201 (390)
T ss_pred HHHHhhc-CEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCC
Confidence 8766655 7789999999999999999997 58999998765 23321100 0 00 0
Q ss_pred CC----------C------c------------------c--cCCce-----EEee-eCCcEEEEEeChhHHHHHHHHHHH
Q 021963 223 DD----------Y------M------------------L--PLSEA-----EVIR-EGSDITLVGWGAQLSIMEQACLDA 260 (305)
Q Consensus 223 ~~----------~------~------------------~--~~gk~-----~~~~-~g~dv~Iia~G~~~~~aleAa~~L 260 (305)
++ . . + .+|+. +... ++.|++||++|++...+++|++.|
T Consensus 202 ~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~l 281 (390)
T PRK08366 202 NPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLL 281 (390)
T ss_pred CCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHH
Confidence 00 0 0 0 01111 1111 357899999999999999999999
Q ss_pred HhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 261 EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 261 ~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
+++|++++++.+++++|||.+.|++.+++.++|+|||.|.+
T Consensus 282 r~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~ 322 (390)
T PRK08366 282 RKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFS 322 (390)
T ss_pred HhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999976
No 43
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=8.9e-17 Score=154.19 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=151.0
Q ss_pred cEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs 166 (305)
.|+. ..+|.+++++|.|+|.+|.|.++. |.++.+..+.|.+-. ++... +|+ .+++..|+.+. ..+.+..
T Consensus 52 ~~v~-~EsE~aA~~~~~GAs~aGaRa~Ta-TS~~Gl~lm~E~l~~-aag~~------lP~-V~vv~~R~~~~-p~~i~~d 120 (394)
T PRK08367 52 EFIK-VESEHSAISACVGASAAGVRTFTA-TASQGLALMHEVLFI-AAGMR------LPI-VMAIGNRALSA-PINIWND 120 (394)
T ss_pred EEEE-eCCHHHHHHHHHHHHhhCCCeEee-eccchHHHHhhHHHH-HHHcc------CCE-EEEECCCCCCC-CCCcCcc
Confidence 3444 489999999999999999999999 588888899998874 44443 455 45544554443 3344446
Q ss_pred chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC------CCCEEEeccc-cccccCcc------C-----CCC------
Q 021963 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD------PNPVVFFEPK-WLYRLSVE------E-----VPE------ 222 (305)
Q Consensus 167 ~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~------~~Pv~i~~~~-~l~~~~~~------~-----~~~------ 222 (305)
|.|.-..|.. ++.++.|+|.+|++++...|++. ..||+++.+. ++++...+ + ++.
T Consensus 121 ~~D~~~~rd~-g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~ 199 (394)
T PRK08367 121 WQDTISQRDT-GWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHA 199 (394)
T ss_pred hHHHHhcccc-CeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCccccccc
Confidence 8886555655 56788999999999999999973 3799999877 34432110 0 000
Q ss_pred -----CC----------Ccc--------------------------cCC-ceEEee----eCCcEEEEEeChhHHHHHHH
Q 021963 223 -----DD----------YML--------------------------PLS-EAEVIR----EGSDITLVGWGAQLSIMEQA 256 (305)
Q Consensus 223 -----~~----------~~~--------------------------~~g-k~~~~~----~g~dv~Iia~G~~~~~aleA 256 (305)
.+ ..+ .+| ++..+. ++.|++||++|+....+++|
T Consensus 200 ~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~kea 279 (394)
T PRK08367 200 YLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEF 279 (394)
T ss_pred ccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHH
Confidence 00 000 022 122221 46799999999999999999
Q ss_pred HHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 257 CLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 257 a~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
++.|+++|++++++.+++++|||.+.|.+.+++.++|+|+|.|..
T Consensus 280 v~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s 324 (394)
T PRK08367 280 VDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNIS 324 (394)
T ss_pred HHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999974
No 44
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.69 E-value=1.3e-15 Score=149.38 Aligned_cols=199 Identities=19% Similarity=0.204 Sum_probs=156.2
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h 165 (305)
+-|++++.+|.-+..+|+|++..|.|.++.+ ....+++|.|.+++ +++.. ..- .+|++ +++|+..|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~m-KhVGlNvAsDpl~s-~ay~G------v~G-Glviv-----~aDDpg~~ 123 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTM-KHVGLNVASDPLMS-LAYAG------VTG-GLVIV-----VADDPGMH 123 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEe-cccccccchhhhhh-hhhcC------ccc-cEEEE-----EccCCCcc
Confidence 7899999999999999999999999999995 89899999999985 55543 232 55554 46676666
Q ss_pred -Cc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc---------cCCCCC--CCcc
Q 021963 166 -SQ--SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV---------EEVPED--DYML 227 (305)
Q Consensus 166 -s~--~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~---------~~~~~~--~~~~ 227 (305)
|| +|-.++.....+.|+.|+|++|++++++.+++ +..||++|...|+.+... +....+ .+.-
T Consensus 124 SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k 203 (640)
T COG4231 124 SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIK 203 (640)
T ss_pred cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccC
Confidence 34 67788888889999999999999999999998 489999998887765421 111011 1110
Q ss_pred cCCce-------------------------------EEeeeC--CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 228 PLSEA-------------------------------EVIREG--SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 228 ~~gk~-------------------------------~~~~~g--~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
..|++ ..+..+ .++-||+.|..+..+.||.+.| |++..++.+.+
T Consensus 204 ~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~ 280 (640)
T COG4231 204 DPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGT 280 (640)
T ss_pred CccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecC
Confidence 11111 111123 6888999999999999987766 99999999999
Q ss_pred ccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 275 LIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 275 i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
.+|||.+.|.+.++..++|+||||+.+
T Consensus 281 ~~Plp~~~i~~F~~g~~~vlVVEE~~P 307 (640)
T COG4231 281 PYPLPEQLIENFLKGLERVLVVEEGEP 307 (640)
T ss_pred CcCCCHHHHHHHHhcCcEEEEEecCCc
Confidence 999999999999999999999999875
No 45
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.69 E-value=1e-17 Score=135.94 Aligned_cols=72 Identities=39% Similarity=0.665 Sum_probs=70.0
Q ss_pred CceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 230 gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
||++++++|+|++|||+|++++.|++|++.|+++|++++|||+++++|||++.|.++++++++++|+|||+.
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYK 72 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCES
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999975
No 46
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.1e-14 Score=141.03 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=212.5
Q ss_pred chHHHHHhhcC--CCCcccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccc------
Q 021963 3 SGLRRFVGSLS--RRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR------ 74 (305)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~------ 74 (305)
++|+.||..+| |++|..|..+++++.++..-++. +.+.|.-+-..+...|.++.-.|-+-++|+..|+ |.
T Consensus 611 e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGT-FShRH~VL 688 (1017)
T KOG0450|consen 611 EILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGT-FSHRHHVL 688 (1017)
T ss_pred HHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHhcCceEEeecccccccc-cccchhhh
Confidence 47899999888 89999999999999999888887 7788888888888899999999999999998764 21
Q ss_pred -----------cchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCC--CeEEEEecccchH---HhHHHHHHHHHhhccc
Q 021963 75 -----------CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRY 138 (305)
Q Consensus 75 -----------~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G--~~p~~~~~~~~F~---~ra~dqi~~~~a~~~~ 138 (305)
.++.+.....|=-+-|..++|-+.+|+-.|.|+.- ..++++.+|++|. |..+||++ ..+-.+|
T Consensus 689 HDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW 767 (1017)
T KOG0450|consen 689 HDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKW 767 (1017)
T ss_pred cccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhh
Confidence 12233322223347789999999999999999984 6788888999996 67899987 3444444
Q ss_pred ccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHcc-------CC-------------CcEEEeeCCHHHHHHHHHHhH
Q 021963 139 RSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCH-------VP-------------GLKVVIPRSPRQAKGLLLSCI 198 (305)
Q Consensus 139 ~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~-------iP-------------~l~V~~P~d~~e~~~~l~~a~ 198 (305)
- ... ++|...+.|.-|.|+.|.|-..+.++.. +| |++|+.+++|..++.+++..+
T Consensus 768 ~----rqs-GlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi 842 (1017)
T KOG0450|consen 768 V----RQS-GLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQI 842 (1017)
T ss_pred h----hhc-CeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHh
Confidence 2 223 7888889888776666555555555432 23 899999999999999999988
Q ss_pred h--CCCCEEEeccccccccCccCCC----CCCCcc-----cCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCe
Q 021963 199 R--DPNPVVFFEPKWLYRLSVEEVP----EDDYML-----PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISC 267 (305)
Q Consensus 199 ~--~~~Pv~i~~~~~l~~~~~~~~~----~~~~~~-----~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~ 267 (305)
. .++|.+|+.||.|.|.+...-+ .+...| +-|++..-.++-+-+|+|+|......-++.+.... --++
T Consensus 843 ~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~-~~~v 921 (1017)
T KOG0450|consen 843 HRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGL-EGDV 921 (1017)
T ss_pred hhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCc-ccce
Confidence 7 5899999999999887532110 011111 12444333456678999999988877776665431 2379
Q ss_pred EEEEeccccCCCHHHHHHHHhccC
Q 021963 268 ELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 268 ~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
.+..+..|.|||.+.|++.+++++
T Consensus 922 Ai~RvEQl~PFp~dli~~e~~~Yp 945 (1017)
T KOG0450|consen 922 AITRVEQLSPFPFDLIQQELNKYP 945 (1017)
T ss_pred eEEEeeccCCCcHHHHHHHHHhCC
Confidence 999999999999999999999986
No 47
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.58 E-value=6.5e-13 Score=126.47 Aligned_cols=213 Identities=19% Similarity=0.180 Sum_probs=151.8
Q ss_pred hhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC
Q 021963 78 GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (305)
Q Consensus 78 ~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~ 157 (305)
.+..+. .-.|+++ .+|.+.++++.|++.+|.|.++.+ .++.+....+.+- .++.+. +|+ -++...|+|+
T Consensus 41 ~~~~~~-~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaT-Sg~Gl~Lm~E~l~-~a~~~~------~P~-Vi~~~~R~~p 109 (365)
T COG0674 41 SWKAKV-GGVFVQM-ESEIGAISAVIGASYAGARAFTAT-SGQGLLLMAEALG-LAAGTE------TPL-VIVVAQRPLP 109 (365)
T ss_pred HHHhhc-CcEEEEe-ccHHHHHHHHHHHHhhCcceEeec-CCccHHHHHHHHH-HHHhcc------CCe-EEEEeccCcC
Confidence 333344 3567666 799999999999999999999994 7776667777665 344333 455 4555678888
Q ss_pred CCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc------------CC-
Q 021963 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE------------EV- 220 (305)
Q Consensus 158 ~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~------------~~- 220 (305)
++..+++..|.|+-..|.. +..++.-+|.+|++.+...|++ .+.|++++.+.-+...... .+
T Consensus 110 s~g~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~ 188 (365)
T COG0674 110 STGLPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIP 188 (365)
T ss_pred CCcccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCcccccccccc
Confidence 8877787789999888877 7777777799999998888887 5899999865443211100 00
Q ss_pred ---------------CC----CCCc----------cc----------------CCc----eEEee-eCCcEEEEEeChhH
Q 021963 221 ---------------PE----DDYM----------LP----------------LSE----AEVIR-EGSDITLVGWGAQL 250 (305)
Q Consensus 221 ---------------~~----~~~~----------~~----------------~gk----~~~~~-~g~dv~Iia~G~~~ 250 (305)
+. .+.. .+ .|. ..+.. ++.+++||++|+..
T Consensus 189 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~ 268 (365)
T COG0674 189 DYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSK 268 (365)
T ss_pred ccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccch
Confidence 00 0000 00 000 11111 46789999999888
Q ss_pred HHHHHHHHHH-HhcCCCeEEEEeccccCCCHHHHHHHHhccC--cEEEEeCCccc
Q 021963 251 SIMEQACLDA-EKEGISCELIDLKTLIPWDKETVEASVRKTG--RLLPRSSGYWR 302 (305)
Q Consensus 251 ~~aleAa~~L-~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~--~vvvvEe~~~~ 302 (305)
..+.+++..+ +++|++++++.+++++|||.+.|++.+++.+ .|+.+|.+..+
T Consensus 269 ~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~ 323 (365)
T COG0674 269 GSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGG 323 (365)
T ss_pred HhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCcc
Confidence 8888887654 5889999999999999999999999998877 77777777554
No 48
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.56 E-value=2.1e-13 Score=139.16 Aligned_cols=278 Identities=18% Similarity=0.237 Sum_probs=207.1
Q ss_pred chHHHHHhhcC--CCCcccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCc---------
Q 021963 3 SGLRRFVGSLS--RRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG--------- 71 (305)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~--------- 71 (305)
.+|++|+...- |+.|+.||-+++.++-+..-..+ ..+.|.-+--.++-.|+.+...|-+.++|...|+
T Consensus 849 ~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~-g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~ 927 (1228)
T PRK12270 849 EVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMARE-GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLI 927 (1228)
T ss_pred HHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEe
Confidence 57899998876 99999999999999877665554 5688887777788899999999999999987653
Q ss_pred ------ccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCC--CeEEEEecccchH---HhHHHHHHHHHhhccccc
Q 021963 72 ------VFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRS 140 (305)
Q Consensus 72 ------~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G--~~p~~~~~~~~F~---~ra~dqi~~~~a~~~~~~ 140 (305)
-|.-+..|...-|+=-++|..++|.+.+|+-.|.+... -.++++.+|++|. |..+|+++ +.+.++|-
T Consensus 928 D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefI-ss~e~KWg- 1005 (1228)
T PRK12270 928 DRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFI-SSGEAKWG- 1005 (1228)
T ss_pred cCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHH-hhhHhhhc-
Confidence 11123334333333357899999999999999999985 5678888999997 67889887 34455552
Q ss_pred CCCcccceeEEEcCCcCCCCCCCCCCchHHHHH--ccCCCcEEEeeCCHHHHHHHHHHhHh--CCCCEEEeccccccccC
Q 021963 141 GNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRLS 216 (305)
Q Consensus 141 ~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~--~~iP~l~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~l~~~~ 216 (305)
+.. .+|...+.|+-|.|+-|.|---+.|+ .+-.||+|..|++|..++.++++-.. .++|.+++.||.|.|.+
T Consensus 1006 ---Q~S-~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~K 1081 (1228)
T PRK12270 1006 ---QRS-GVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLK 1081 (1228)
T ss_pred ---ccc-ceEEEccCCcCCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcch
Confidence 233 67778888887766655564455554 55679999999999999999997765 48999999999998875
Q ss_pred ccCCCCCCCcccCCceEEee------eC--CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh
Q 021963 217 VEEVPEDDYMLPLSEAEVIR------EG--SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (305)
Q Consensus 217 ~~~~~~~~~~~~~gk~~~~~------~g--~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~ 288 (305)
...-+.+ .|.-|+.+-+- ++ -+-+|+|+|-.....++..+. ...-++.+|.+-.|.|||.+.|++.+.
T Consensus 1082 aA~S~ve--dFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~ 1157 (1228)
T PRK12270 1082 AAVSDVE--DFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALA 1157 (1228)
T ss_pred hhcCCHH--HhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHH
Confidence 3211111 23334443221 11 356799999999888766443 334579999999999999999999998
Q ss_pred ccC
Q 021963 289 KTG 291 (305)
Q Consensus 289 ~~~ 291 (305)
++.
T Consensus 1158 ~yp 1160 (1228)
T PRK12270 1158 RYP 1160 (1228)
T ss_pred hCC
Confidence 874
No 49
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.53 E-value=2.6e-12 Score=137.73 Aligned_cols=203 Identities=14% Similarity=0.143 Sum_probs=146.1
Q ss_pred cEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs 166 (305)
.|+++ .+|.++++++.|.+.+|.+.++.+ .++-+....+.+-. ++-.. +|+ -+++..|+++..+...+-.
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~T-Ss~GL~LM~e~l~~-~ag~~------~P~-Vi~va~R~~~~~~~~i~~d 122 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFT-ASQGLLLMIPNMYK-IAGEL------LPC-VFHVSARAIAAHALSIFGD 122 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEec-ChhHHHHHHHHHHH-HHhcc------CCE-EEEEecCCCCCCCCccCCC
Confidence 46665 799999999999999999999984 67666566676642 33222 455 4445567776544444445
Q ss_pred chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc-ccccCcc-C----------CCC--------
Q 021963 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW-LYRLSVE-E----------VPE-------- 222 (305)
Q Consensus 167 ~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~-l~~~~~~-~----------~~~-------- 222 (305)
+.|+...|.. |..+++|+|.+|+.++...|++ .+.|++++.+.- .++...+ + ++.
T Consensus 123 h~Dv~~~R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~ 201 (1165)
T TIGR02176 123 HQDVMAARQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRK 201 (1165)
T ss_pred chHHHHhhcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccc
Confidence 7787666666 6789999999999998888876 689999987742 2221000 0 000
Q ss_pred ----------------CCCcc--------------------------cCCc----eEEe-eeCCcEEEEEeChhHHHHHH
Q 021963 223 ----------------DDYML--------------------------PLSE----AEVI-REGSDITLVGWGAQLSIMEQ 255 (305)
Q Consensus 223 ----------------~~~~~--------------------------~~gk----~~~~-~~g~dv~Iia~G~~~~~ale 255 (305)
++..+ -.|+ .+.. .++.+.+||++|+....+.+
T Consensus 202 ~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~e 281 (1165)
T TIGR02176 202 RSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEE 281 (1165)
T ss_pred cccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHH
Confidence 00000 0111 1111 14578999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeccccCCCHHHHHHHH-hccCcEEEEeCCc
Q 021963 256 ACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLPRSSGY 300 (305)
Q Consensus 256 Aa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~-~~~~~vvvvEe~~ 300 (305)
|++.|+++|+++++|.+++++|||.+.|++.+ ++.++|+|+|.+.
T Consensus 282 av~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~ 327 (1165)
T TIGR02176 282 TVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTK 327 (1165)
T ss_pred HHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCC
Confidence 99999999999999999999999999998977 5779999999985
No 50
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.8e-13 Score=131.84 Aligned_cols=272 Identities=22% Similarity=0.308 Sum_probs=193.8
Q ss_pred CCCcccchhhH-HHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccc---------cchh-----
Q 021963 14 RRNLSTACANK-QLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR---------CTTG----- 78 (305)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~---------~~~~----- 78 (305)
++.|+.|+|+- .-++.+-.|...+.++.|..|-+.++..++.+..+|-+-++|++.|+ |. .+++
T Consensus 537 Pedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGT-FshRHAM~VdQ~Td~~~IPL 615 (913)
T KOG0451|consen 537 PEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGT-FSHRHAMLVDQQTDEMFIPL 615 (913)
T ss_pred chhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCccc-ccccceeeeeccccceeeec
Confidence 99999999974 45555555566689999999999999999999999999999999764 11 0111
Q ss_pred --hHhhh-CCCcEEecchhHHHHHHHHHHHHhCC--CeEEEEecccchHHhH---HHHHHHHHhhcccccCCCcccceeE
Q 021963 79 --LADRF-GKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPA---FDQIVNEAAKFRYRSGNQFNCGGLT 150 (305)
Q Consensus 79 --~~~~~-gp~r~~~~gIaE~~~v~~AaGlA~~G--~~p~~~~~~~~F~~ra---~dqi~~~~a~~~~~~~~~~~v~~lv 150 (305)
+-... |.=-+-|..++|.+.+|+-.|||... ..++++.+|++|.+-| +|-+.. -+-.+|+. .. .++
T Consensus 616 N~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl~----ss-glv 689 (913)
T KOG0451|consen 616 NSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWLE----SS-GLV 689 (913)
T ss_pred cccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchhhhh----hC-CeE
Confidence 10000 01124567899999999999999985 4689998999997443 333331 23334543 33 677
Q ss_pred EEcCCcCCCCCCCCCCchHHHHHccC-----------CCcEEEeeCCHHHHHHHHHHhH--hCCCCEEEeccccccccCc
Q 021963 151 VRAPYGAVGHGGHYHSQSPEAFFCHV-----------PGLKVVIPRSPRQAKGLLLSCI--RDPNPVVFFEPKWLYRLSV 217 (305)
Q Consensus 151 ~~~~~g~~~~~g~~hs~~d~a~~~~i-----------P~l~V~~P~d~~e~~~~l~~a~--~~~~Pv~i~~~~~l~~~~~ 217 (305)
+..+.|..|.++.|.|-.-..++... -||.|+.|.+|.+++.+++..+ ++++|.++..||.|.|.+.
T Consensus 690 mLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPa 769 (913)
T KOG0451|consen 690 MLLPHGYDGAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPA 769 (913)
T ss_pred EEccCCcCCCCCccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcc
Confidence 78888876655544443344554332 3999999999999999999776 4699999999999887643
Q ss_pred c-----CC-CCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 218 E-----EV-PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 218 ~-----~~-~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
. +. |...|.-.+|....-.+.-+-+|+++|-......++.+.+..+. .+.++.+.++.|||.+.|+..++|++
T Consensus 770 A~ST~~ef~PGTtf~nVigd~~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~ 848 (913)
T KOG0451|consen 770 ATSTHEEFQPGTTFHNVIGDTIAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYG 848 (913)
T ss_pred hhhhHhhcCCCccccccccccccChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcC
Confidence 1 11 11223333554322223346789999999998888888775443 38999999999999999999999886
Q ss_pred cE
Q 021963 292 RL 293 (305)
Q Consensus 292 ~v 293 (305)
.+
T Consensus 849 ~v 850 (913)
T KOG0451|consen 849 NV 850 (913)
T ss_pred Ch
Confidence 43
No 51
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.48 E-value=1.4e-12 Score=138.34 Aligned_cols=249 Identities=13% Similarity=0.015 Sum_probs=168.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccC--C-Ccc-cccchhhHhhhCC-----CcEEecchhHHHHHHHHHHHH---
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVG--F-GGV-FRCTTGLADRFGK-----SRVFNTPLCEQGIVGFAIGLA--- 106 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~--~-g~~-~~~~~~~~~~~gp-----~r~~~~gIaE~~~v~~AaGlA--- 106 (305)
-++-.+|+...+.+-.+.|..-=+-++.+. | |+- ....+.|++ +.. +-++++|++|.-+..++.|.+
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~-~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWK-AKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHH-hhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 355678888887776666644211111111 1 111 112233432 211 379999999999999999999
Q ss_pred ------hCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-Cc--hHHHHHccCC
Q 021963 107 ------AMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQ--SPEAFFCHVP 177 (305)
Q Consensus 107 ------~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~--~d~a~~~~iP 177 (305)
..|.+.+++ +..+.+.||.|.+++ +++..- .+.|.++++ +++|+..| || .|-.++....
T Consensus 98 ~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~-~n~~G~-----~~~GG~v~v-----~gDDpg~~SSq~eqdSr~~~~~a 165 (1159)
T PRK13030 98 ADPERTVDGVFAMWY-GKGPGVDRAGDALKH-GNAYGS-----SPHGGVLVV-----AGDDHGCVSSSMPHQSDFALIAW 165 (1159)
T ss_pred ccCCccccceEEEEe-cCcCCcccchhHHHH-HHhhcC-----CCCCcEEEE-----EecCCCCccCcCHHHHHHHHHHc
Confidence 778888999 599999999999995 333321 112244444 45665555 34 5556666667
Q ss_pred CcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc-----c-----CCCCCCCcc----------------
Q 021963 178 GLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E-----EVPEDDYML---------------- 227 (305)
Q Consensus 178 ~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~-----~-----~~~~~~~~~---------------- 227 (305)
+|.|+.|+|++|++.+.+++++ +..||.++...++.+... + ..+ .++..
T Consensus 166 ~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~-~~f~~~~~~~~~r~~~~p~~~ 244 (1159)
T PRK13030 166 HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAP-EDFTPPAGGLHNRWPDLPSLA 244 (1159)
T ss_pred CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCc-cccCCCcccccccCCCCcHHH
Confidence 8889999999999999999998 489999986666543210 0 011 11111
Q ss_pred -------------------cCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCC-----CeEEEEeccccCCCHHHH
Q 021963 228 -------------------PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGI-----SCELIDLKTLIPWDKETV 283 (305)
Q Consensus 228 -------------------~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi-----~~~vI~~~~i~P~d~~~i 283 (305)
++.+..+-.++.++.||++|.....++||.+.|...+. .++|+.+...+|||.+.|
T Consensus 245 ~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i 324 (1159)
T PRK13030 245 IEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRL 324 (1159)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHH
Confidence 11111111124679999999999999999998854332 368888889999999999
Q ss_pred HHHHhccCcEEEEeCCcc
Q 021963 284 EASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 284 ~~~~~~~~~vvvvEe~~~ 301 (305)
.+.++..++|+||||+.+
T Consensus 325 ~~F~~g~d~VlVVEE~~p 342 (1159)
T PRK13030 325 REFADGLEEILVIEEKRP 342 (1159)
T ss_pred HHHHhcCCEEEEEeCCch
Confidence 999999999999999976
No 52
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.42 E-value=7.3e-12 Score=132.57 Aligned_cols=257 Identities=17% Similarity=0.101 Sum_probs=172.0
Q ss_pred hhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCC--E---EEEecccC--CCcccccchhhHhhhC-----CCcE
Q 021963 21 CANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPR--A---YVFGEDVG--FGGVFRCTTGLADRFG-----KSRV 88 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~--i---v~~~~D~~--~g~~~~~~~~~~~~~g-----p~r~ 88 (305)
.+++..+...+|+. -++-.+|+...+.+-.+.|.. + -++++==+ .++ ..+.|++ +. .+-+
T Consensus 13 ~~l~d~y~~~~g~~----~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~---id~~l~~-~~~~l~~~~i~ 84 (1165)
T PRK09193 13 VTLDDKYTLERGRV----FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGG---LDQELWR-AKKHLAAHDIV 84 (1165)
T ss_pred CCcccccccccCCe----eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHH---HHHHHHH-hhhhhcccceE
Confidence 34444454444432 344567777777765555532 2 22322211 111 1233332 20 1378
Q ss_pred EecchhHHHHHHHH---------HHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 89 FNTPLCEQGIVGFA---------IGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 89 ~~~gIaE~~~v~~A---------aGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|++|++|.-+.+++ .|.+..|.+.+++ +..+.+.||-|.+++ +++..- .+.|.++++ ++
T Consensus 85 fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~-~n~~G~-----~~~GGvv~v-----~g 152 (1165)
T PRK09193 85 FQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWY-GKGPGVDRSGDVFRH-ANAAGT-----SPHGGVLAL-----AG 152 (1165)
T ss_pred EeeccCHHHHHHHHhhhcccccccceeeccceEEEe-cCcCCccccHhHHHH-HHhhcC-----CCCCcEEEE-----Ee
Confidence 99999999999999 7779999999999 599999999999995 333221 112245544 45
Q ss_pred CCCCCC-Cc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc-----c-----CCCC
Q 021963 160 HGGHYH-SQ--SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E-----EVPE 222 (305)
Q Consensus 160 ~~g~~h-s~--~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~-----~-----~~~~ 222 (305)
+|+..| || .|-.++....+|.|+.|+|++|++.+.+++++ +..||.++...++.+... + ..+
T Consensus 153 DDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~- 231 (1165)
T PRK09193 153 DDHAAKSSTLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLP- 231 (1165)
T ss_pred cCCCCccccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCc-
Confidence 565555 33 45555556667889999999999999999997 489999986666543210 0 011
Q ss_pred CCCcccCC----ce----------------------------E-Eeee--CCcEEEEEeChhHHHHHHHHHHHHhcCCC-
Q 021963 223 DDYMLPLS----EA----------------------------E-VIRE--GSDITLVGWGAQLSIMEQACLDAEKEGIS- 266 (305)
Q Consensus 223 ~~~~~~~g----k~----------------------------~-~~~~--g~dv~Iia~G~~~~~aleAa~~L~~~Gi~- 266 (305)
+++..+.+ ++ + +... +.++-||++|.....++||.+.| |++
T Consensus 232 ~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~ 308 (1165)
T PRK09193 232 EDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDE 308 (1165)
T ss_pred ccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 11212222 11 0 1112 36799999999999999998876 665
Q ss_pred -------eEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 267 -------CELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 267 -------~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
++|+.+...+|||.+.|++.+++.++|+||||..+
T Consensus 309 ~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p 350 (1165)
T PRK09193 309 ETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ 350 (1165)
T ss_pred hhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch
Confidence 89999999999999999999999999999999765
No 53
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.40 E-value=1.2e-11 Score=126.70 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=158.0
Q ss_pred CCcccHHHHHHHHHHHHHhcC---CCEEEEecccCCCcccccchhhH-------------------------hhhCCCcE
Q 021963 37 GKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGGVFRCTTGLA-------------------------DRFGKSRV 88 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~---~~iv~~~~D~~~g~~~~~~~~~~-------------------------~~~gp~r~ 88 (305)
.+.+|+..||+..|..|++.. ++||-+.+|.+.+ |+ ++.+- +.- ..|+
T Consensus 486 ~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeart--fg-m~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~-~Gq~ 561 (885)
T TIGR00759 486 EREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEART--FG-MEGLFRQIGIYSPHGQTYTPVDADSLLAYKESK-DGQI 561 (885)
T ss_pred CCCccHHHHHHHHHHHHhcCcccccceeecCCCcccc--CC-hHHhhcccCccCCCCccCCccchhhhhhcccCC-CCcc
Confidence 366899999999999999863 7799999998632 11 22221 122 4689
Q ss_pred EecchhHHHHHHH--HHHHHhC--C--CeEEEEecccch-HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC---
Q 021963 89 FNTPLCEQGIVGF--AIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--- 158 (305)
Q Consensus 89 ~~~gIaE~~~v~~--AaGlA~~--G--~~p~~~~~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--- 158 (305)
++.||+|.++++. |+|.|.+ | +.||... |++| .+|.-|.+- .+|.+.- - .+++-+++|.+
T Consensus 562 le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~-YsmFgfqR~gD~~w-aa~d~~a-------r-gfl~g~taGrtTL~ 631 (885)
T TIGR00759 562 LQEGINEAGAMASWIAAATSYATHGEPMIPFYIY-YSMFGFQRIGDLCW-AAADQRA-------R-GFLLGATAGRTTLN 631 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEe-eccccccchHHHHH-HHhhhcC-------C-ceEeccCCCcccCC
Confidence 9999999999864 5666554 6 5799874 9999 899999876 5666642 1 33334445542
Q ss_pred CCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEEeccc--cccccCccCCCCC-CCcccCCc
Q 021963 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFEPK--WLYRLSVEEVPED-DYMLPLSE 231 (305)
Q Consensus 159 ~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~~~--~l~~~~~~~~~~~-~~~~~~gk 231 (305)
++++.|++.--..+...+||+.-|.|+...|+..++++.++. +..+|.+.+. +-+.+ |..|+. ...+.-|-
T Consensus 632 gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~q--p~~p~~~~egIlkG~ 709 (885)
T TIGR00759 632 GEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQ--PPMPEGAEEGILKGL 709 (885)
T ss_pred CccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCC--CCCCcchHHhHHhCc
Confidence 333333333334456789999999999999999999999973 5667774433 11211 122211 01122333
Q ss_pred eEEeee------CCcEEEEEeChhHHHHHHHHHHHHhc-CCCeEEEEeccccCCCHHH
Q 021963 232 AEVIRE------GSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKET 282 (305)
Q Consensus 232 ~~~~~~------g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~~vI~~~~i~P~d~~~ 282 (305)
+ .+++ +.++.|+++|+.+.++++|++.|+++ |+.++|.++.|..-|..+.
T Consensus 710 Y-~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~ 766 (885)
T TIGR00759 710 Y-RFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDG 766 (885)
T ss_pred e-ecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhH
Confidence 3 2332 24799999999999999999999986 9999999999987776663
No 54
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.38 E-value=1e-11 Score=103.61 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=87.3
Q ss_pred hhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEc-CCcCCC
Q 021963 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG 159 (305)
Q Consensus 81 ~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~-~~g~~~ 159 (305)
.+. +++.+..++.|++++++|.|+|+.|.+|++.+++++|+.++++++. .++..+ . |++++. ..+...
T Consensus 31 ~~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~------~---Pvl~i~~~~~~~~ 99 (154)
T cd06586 31 REG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEH------L---PVVFLIGARGISA 99 (154)
T ss_pred hcc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcC------C---CEEEEeCCCChhh
Confidence 345 7899999999999999999999997788888777999999999999 555443 3 444443 222222
Q ss_pred -CCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhH----hCCCCEEEecc
Q 021963 160 -HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEP 209 (305)
Q Consensus 160 -~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~ 209 (305)
..+++|.++++++++.+|++.+..|++.++.. .+..++ ..++|++|+.|
T Consensus 100 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 100 QAKQTFQSMFDLGMYRSIPEANISSPSPAELPA-GIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred hccCcccccCHHHHHHHhhheEEEeCCHHHHHH-HHHHHHHHHhcCCCCEEEEcc
Confidence 34556678999999999999888887765554 334444 34789999665
No 55
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.36 E-value=1.6e-11 Score=129.82 Aligned_cols=199 Identities=16% Similarity=0.114 Sum_probs=145.9
Q ss_pred CcEEecchhHHHH---------HHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHh-hcccccCCCcccceeEEEcCC
Q 021963 86 SRVFNTPLCEQGI---------VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAA-KFRYRSGNQFNCGGLTVRAPY 155 (305)
Q Consensus 86 ~r~~~~gIaE~~~---------v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a-~~~~~~~~~~~v~~lv~~~~~ 155 (305)
+-+|++|++|.-+ +.++.|.+..|.+.+++ +..+.+.|+-|.+++... +.. .. |.++++
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~gt~------~~-GGvv~v--- 153 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLAGTS------PL-GGVLVL--- 153 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhccccC------CC-CcEEEE---
Confidence 3789999999999 77888888899999999 599999999999996432 221 12 244444
Q ss_pred cCCCCCCCCC-Cc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc-----c-----
Q 021963 156 GAVGHGGHYH-SQ--SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E----- 218 (305)
Q Consensus 156 g~~~~~g~~h-s~--~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~-----~----- 218 (305)
.++|+..| || .|-.++...-+|.|+.|+|++|++.+..++++ +..||.++...++.+... +
T Consensus 154 --~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~ 231 (1186)
T PRK13029 154 --AGDDHGAKSSSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDI 231 (1186)
T ss_pred --EecCCCCccccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCccccc
Confidence 35565555 33 44455555567889999999999999999997 489999987666543311 0
Q ss_pred CCCCCCCcccCC--------------------------------ceE-Ee--eeCCcEEEEEeChhHHHHHHHHHHHHhc
Q 021963 219 EVPEDDYMLPLS--------------------------------EAE-VI--REGSDITLVGWGAQLSIMEQACLDAEKE 263 (305)
Q Consensus 219 ~~~~~~~~~~~g--------------------------------k~~-~~--~~g~dv~Iia~G~~~~~aleAa~~L~~~ 263 (305)
..+ .++..+.| ..+ +. .++.++-||++|.....++||.+.|
T Consensus 232 ~~p-~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l--- 307 (1186)
T PRK13029 232 VLP-DDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL--- 307 (1186)
T ss_pred CCc-ccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---
Confidence 011 11111111 001 11 1246799999999999999998876
Q ss_pred CCC--------eEEEEeccccCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 264 GIS--------CELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 264 Gi~--------~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
|++ ++|+.+.+.||||.+.|.+.++..+.|+||||..+
T Consensus 308 gl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p 353 (1186)
T PRK13029 308 GLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA 353 (1186)
T ss_pred CCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch
Confidence 665 89999999999999999999999999999999864
No 56
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.28 E-value=3.7e-11 Score=122.61 Aligned_cols=280 Identities=21% Similarity=0.309 Sum_probs=198.6
Q ss_pred chHHHHHhhcC--CCCcccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCc---------
Q 021963 3 SGLRRFVGSLS--RRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG--------- 71 (305)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~--------- 71 (305)
.+||.++.++. |+.|.-++-.++++..+..-...+..+.|..|-..+...+......+.+-++|.+.|+
T Consensus 527 ~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlh 606 (906)
T COG0567 527 KTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLH 606 (906)
T ss_pred HHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeee
Confidence 57899999888 8899999999997766665565667889999998999999999999999999998663
Q ss_pred ------ccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCe--EEEEecccchH---HhHHHHHHHHHhhccccc
Q 021963 72 ------VFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR--AIAEIQFADYI---FPAFDQIVNEAAKFRYRS 140 (305)
Q Consensus 72 ------~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~--p~~~~~~~~F~---~ra~dqi~~~~a~~~~~~ 140 (305)
.|..+..+...-|.=..+|.+.+|.+++++-.|.+..-.+ .+++.+|++|. +..+||... .+-++|-
T Consensus 607 dq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfis-Sge~KW~- 684 (906)
T COG0567 607 DQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFIS-SGEQKWG- 684 (906)
T ss_pred cccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccc-cHHHHHH-
Confidence 1111222222222335789999999999999999998543 56666899997 677899873 3333332
Q ss_pred CCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccC--CCcEEEeeCCHHHHHHHHHHhHh--CCCCEEEeccccccccC
Q 021963 141 GNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHV--PGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRLS 216 (305)
Q Consensus 141 ~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~i--P~l~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~l~~~~ 216 (305)
... .++...+.|+-|.++.|.|--...++... -||+|..|+++.+.+.+++.-+. .+.|.++..||.+.|.+
T Consensus 685 ---r~s-gLv~lLPHgyEGQGPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~ 760 (906)
T COG0567 685 ---RMS-GLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHK 760 (906)
T ss_pred ---Hhc-CceEEccCCCCCCCCcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhcc
Confidence 123 67777788876655555555555565443 49999999999999999997775 48999999999998854
Q ss_pred ccCCCCCC---Ccc--cCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcC-CCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 217 VEEVPEDD---YML--PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 217 ~~~~~~~~---~~~--~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~G-i~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
...-+.++ ..| .++....+...-+.+++|+|-+.....+.. ++.| .++.++.+..|.|||.+.+.+.++++
T Consensus 761 ~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y 837 (906)
T COG0567 761 LAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKY 837 (906)
T ss_pred ccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhc
Confidence 21110000 011 111110011113567889998887766655 3334 48999999999999999999999877
Q ss_pred C
Q 021963 291 G 291 (305)
Q Consensus 291 ~ 291 (305)
.
T Consensus 838 ~ 838 (906)
T COG0567 838 P 838 (906)
T ss_pred c
Confidence 3
No 57
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.19 E-value=6.7e-10 Score=110.11 Aligned_cols=242 Identities=15% Similarity=0.084 Sum_probs=158.4
Q ss_pred hhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcC---CCEEEEecccCCCcccccchhhH-----------------
Q 021963 21 CANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGGVFRCTTGLA----------------- 80 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~---~~iv~~~~D~~~g~~~~~~~~~~----------------- 80 (305)
|++++......++.. .+|+..||...|.+++++. ++||-+.+|.+.+ |+ ++.+-
T Consensus 476 P~l~~~~a~~~~~g~---~iSTtmAfvr~l~~llkdk~ig~riVpiipDearT--fg-meg~f~q~GIy~~~GQ~y~p~d 549 (887)
T COG2609 476 PSLSDFQALLKGQGE---EISTTMAFVRILNELLKDKEIGKRIVPIIPDEART--FG-MEGLFRQIGIYNPNGQQYTPQD 549 (887)
T ss_pred CcHHHHHHHHhccCc---cchhHHHHHHHHHHHHhccccCCccccccCchhhh--cc-chhhhhhcccccCCCccCCccc
Confidence 555555555555544 5889999999999999953 6799999998622 11 22211
Q ss_pred --------hhhCCCcEEecchhHHHHHHH--HHHHHhC--C--CeEEEEecccch-HHhHHHHHHHHHhhcccccCCCcc
Q 021963 81 --------DRFGKSRVFNTPLCEQGIVGF--AIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFN 145 (305)
Q Consensus 81 --------~~~gp~r~~~~gIaE~~~v~~--AaGlA~~--G--~~p~~~~~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~ 145 (305)
+.- ..++++-||+|.++++. |+|.+.+ | +.||.-. |++| ++|.-|.+- .+|.+..+
T Consensus 550 ~~~~~~ykea~-~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgfqRigD~~w-aA~dq~AR------ 620 (887)
T COG2609 550 RDQVMYYKEAE-SGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGFQRIGDLLW-AAGDQDAR------ 620 (887)
T ss_pred hhhhhhhhhCC-CcchHHhhhccccHHHHHHHHhcccccCCccceeeeee-echhhhhhHHHHHH-HHHhhhhc------
Confidence 111 35789999999999864 6666654 5 5799874 9999 799999654 67776521
Q ss_pred cceeEEEcCCcCC-CCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-------CCCEEEeccccccccC
Q 021963 146 CGGLTVRAPYGAV-GHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-------PNPVVFFEPKWLYRLS 216 (305)
Q Consensus 146 v~~lv~~~~~g~~-~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-------~~Pv~i~~~~~l~~~~ 216 (305)
+.|+.-++++.. .+.|.+| +.--.-+-..+||+.-+.|+-..|+.-++++.++. +.-.||+...+-+.+
T Consensus 621 -gFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q- 698 (887)
T COG2609 621 -GFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ- 698 (887)
T ss_pred -ceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC-
Confidence 245444444432 2233444 22222233579999999999999999999999982 233556322222211
Q ss_pred ccCCCCCC-CcccCCceEEeee----CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeEEEEeccccCCCH
Q 021963 217 VEEVPEDD-YMLPLSEAEVIRE----GSDITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDK 280 (305)
Q Consensus 217 ~~~~~~~~-~~~~~gk~~~~~~----g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI~~~~i~P~d~ 280 (305)
|..|.+. ..+..|-+...+. +.++.|+++|....+|++|++.|++ .|+.++|..+.|..-|..
T Consensus 699 -Pamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~r 767 (887)
T COG2609 699 -PAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELAR 767 (887)
T ss_pred -CCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhc
Confidence 2222211 1232332222211 4689999999999999999999987 699999999998665543
No 58
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.95 E-value=3e-09 Score=95.30 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=83.7
Q ss_pred EEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCc
Q 021963 88 VFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ 167 (305)
Q Consensus 88 ~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~ 167 (305)
.+....+|.++++++.|+|++|.|.++. |.++.+..+.|.|-. ++..+ +|+ -+++..|+|+..+..++..|
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~-ts~~Gl~lm~e~l~~-a~~~~------~P~-V~~~~~R~g~~~g~~~~~~q 108 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTA-TSGPGLNLMAEPLYW-AAGTE------LPI-VIVVVQRAGPSPGLSTQPEQ 108 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEE-EECCHHHHHCCCHHH-HHHTT--------E-EEEEEEB---SSSB--SB-S
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEe-ecCCcccccHhHHHH-HHHcC------CCE-EEEEEECCCCCCCCcCcCCh
Confidence 5677799999999999999999999999 488877788888763 44444 566 56666788876656666679
Q ss_pred hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccc
Q 021963 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (305)
Q Consensus 168 ~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 213 (305)
+|..+.+.. ++.|+.|+|++|++++...|++ ++.||+++.+..+.
T Consensus 109 ~D~~~~~d~-~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 109 DDLMAARDS-GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp HHHHHTTTS-S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hHHHHHHhc-CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 998888855 6779999999999999999987 59999999887765
No 59
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=2e-06 Score=86.16 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHhcCCC-EEEEecccCC----CcccccchhhH--h-------hhCCCcEEecchhHHHHHHHHHHHHh
Q 021963 42 LYSAINQALHIALETDPR-AYVFGEDVGF----GGVFRCTTGLA--D-------RFGKSRVFNTPLCEQGIVGFAIGLAA 107 (305)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~-iv~~~~D~~~----g~~~~~~~~~~--~-------~~gp~r~~~~gIaE~~~v~~AaGlA~ 107 (305)
-..++++.+.++++.|++ +.+.++|-.. ++++++++... . .-...|+++ ..+|..+.|.+.|+++
T Consensus 403 ~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~L 481 (793)
T COG3957 403 STTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLL 481 (793)
T ss_pred hHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHh
Confidence 357899999999999988 9999999642 23333333322 1 111358888 6999999999999999
Q ss_pred CCCeEEEEecccchH---HhHHHHHHHH--Hhh-cccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHHHH-ccCC-C
Q 021963 108 MGNRAIAEIQFADYI---FPAFDQIVNE--AAK-FRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFF-CHVP-G 178 (305)
Q Consensus 108 ~G~~p~~~~~~~~F~---~ra~dqi~~~--~a~-~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a~~-~~iP-~ 178 (305)
.|.+-+++ +|-.|+ .-++.|.... ++. ..|+.. ++..+++.+...---++.|-+|+ -..+..+ ...+ .
T Consensus 482 tGr~glf~-sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~--~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~ 558 (793)
T COG3957 482 TGRHGLFA-SYEAFAHIVDSMFNQHAKWLKVTREVEWRRP--IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDI 558 (793)
T ss_pred cCCcccee-eHHHHHHHHHHHHhhhHHHHHHHHhcccCCC--CCcccceeehhhhhcccCCCccCCchHHHHHHhhccCc
Confidence 99999999 699997 2233332211 121 122211 11112332211112356777775 3444333 2233 6
Q ss_pred cEEEeeCCHHHHHHHHHHhHhCCCCE-EEeccccccccCccCCCCC---CCcccCCc--eEEee--e-CCcEEEEEeChh
Q 021963 179 LKVVIPRSPRQAKGLLLSCIRDPNPV-VFFEPKWLYRLSVEEVPED---DYMLPLSE--AEVIR--E-GSDITLVGWGAQ 249 (305)
Q Consensus 179 l~V~~P~d~~e~~~~l~~a~~~~~Pv-~i~~~~~l~~~~~~~~~~~---~~~~~~gk--~~~~~--~-g~dv~Iia~G~~ 249 (305)
+.|+.|.|+.-+..++.++++.++-+ +|-.+| ++.+...+- .....-|- ++... + ..|+++.+.|.+
T Consensus 559 vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K----~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~ 634 (793)
T COG3957 559 VRVYFPPDANTLLAVYDHCLRSRNKINVIVASK----QPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDV 634 (793)
T ss_pred eeEecCCCCcchhhhhhHHhhccCceEEEEecC----CCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCc
Confidence 78999999999999999999864332 232233 222221110 01122221 11111 1 247999999986
Q ss_pred -HHHHHHHHHHHHhcC--CCeEEEE---eccccCC-------CHHHHHHHHhccCcEEEEeCC
Q 021963 250 -LSIMEQACLDAEKEG--ISCELID---LKTLIPW-------DKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 250 -~~~aleAa~~L~~~G--i~~~vI~---~~~i~P~-------d~~~i~~~~~~~~~vvvvEe~ 299 (305)
+.++++|++.|++++ ++++||+ +..+.|- +.+...+..-+.++++..=-+
T Consensus 635 ~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~fHG 697 (793)
T COG3957 635 PTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFLFHG 697 (793)
T ss_pred chHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceeeeecC
Confidence 699999999999998 7766555 4555543 344555555555666654444
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.52 E-value=0.0045 Score=51.88 Aligned_cols=110 Identities=21% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCC
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~ 164 (305)
.-+++.+- .|++.+.+|.|.++.|.++.+. +.++.+..+.+.+.+... .+ + |+++....-+....+..
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~-~~gpG~~n~~~~l~~a~~-~~--------~-P~v~i~g~~~~~~~~~~ 108 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG-AE--------L-PLVIVVAQRPGPSTGLP 108 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEe-eCcchHHHHHHHHHHHHh-CC--------C-CEEEEEeeCCCCCCCCC
Confidence 35788886 9999999999999998885554 578877778888774332 11 3 55554322111111110
Q ss_pred C-CchH---HHHHccCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEEec
Q 021963 165 H-SQSP---EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFE 208 (305)
Q Consensus 165 h-s~~d---~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~ 208 (305)
| .++| ..+++. -..++.+.+++|+..+++.|++. ++||+++.
T Consensus 109 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 109 KPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CcCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 2 2332 233333 56788899999999999988873 68999964
No 61
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.47 E-value=0.0018 Score=53.90 Aligned_cols=112 Identities=24% Similarity=0.252 Sum_probs=72.4
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCC-eEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEc-CCcCCCCC-C
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVGHG-G 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~-~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~-~~g~~~~~-g 162 (305)
-|++.+ ..|.+++.+|.|.++.+- .+++.++.++-+..+.+.+.+ +...+ . |+++.. ..+....+ .
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~-A~~~~------~---Pll~i~~~~~~~~~~~~ 103 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN-AYLDS------I---PLLVITGQRPTAGEGRG 103 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH-HHhhC------C---CEEEEeCCCccccccCC
Confidence 466666 699999999999999954 555555667777777777764 32222 3 445442 21211212 2
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEP 209 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~ 209 (305)
.++......+++.+-.. .+...+++++...+..|++. ++||||..|
T Consensus 104 ~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 104 AFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred cccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 22234455677777544 67778999999988888872 689999544
No 62
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.20 E-value=0.0032 Score=60.21 Aligned_cols=122 Identities=17% Similarity=0.087 Sum_probs=75.6
Q ss_pred hhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHh-hcccccCCCcccceeEEEcCCcCCC
Q 021963 82 RFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAA-KFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 82 ~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a-~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
+..+.|++-+ -.|...|++|+|+.++ |.+|++.++.+.+ ..+.+.+. +++ ..-| .+|+ .+++..||-+..
T Consensus 23 ~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~~y----~iP~-l~~i~~RG~~g~ 94 (361)
T TIGR03297 23 NNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTEVY----DIPL-LLIVGWRGEPGV 94 (361)
T ss_pred cCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhcccccc----CcCe-eEEEecCCCCCC
Confidence 4423466665 5899999999999999 9999999755554 34555543 221 1112 2677 666666766544
Q ss_pred CCCCCCC-chH--HHHHccCCCcEEEe-eCCHHHHHHHHHHhH----hCCCCEEEeccccc
Q 021963 160 HGGHYHS-QSP--EAFFCHVPGLKVVI-PRSPRQAKGLLLSCI----RDPNPVVFFEPKWL 212 (305)
Q Consensus 160 ~~g~~hs-~~d--~a~~~~iP~l~V~~-P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l 212 (305)
.+-++|. +.. ..++..+ ++.... |.+.+|....+..++ +.+.|+.++.+++.
T Consensus 95 ~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~ 154 (361)
T TIGR03297 95 HDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGT 154 (361)
T ss_pred CCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 5667773 332 3455543 333333 456666655555555 46899999877764
No 63
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.16 E-value=0.023 Score=48.46 Aligned_cols=153 Identities=15% Similarity=0.233 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecccCCCc----ccccchh-hH-hhh--------CCCcEEecchhHHHHHHHHHHHHhC
Q 021963 44 SAINQALHIALETDP-RAYVFGEDVGFGG----VFRCTTG-LA-DRF--------GKSRVFNTPLCEQGIVGFAIGLAAM 108 (305)
Q Consensus 44 ~a~~~~L~~l~~~~~-~iv~~~~D~~~g~----~~~~~~~-~~-~~~--------gp~r~~~~gIaE~~~v~~AaGlA~~ 108 (305)
.++++.|.++++.|+ ++-+.++|-..+. ++..++. +. +-. .+++-+..-.+|....|...|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467888999998875 6899999965321 2222222 10 000 0223334459999999999999999
Q ss_pred CCeEEEEecccchHH---hHHHHHHHHH---hhcccccCCCcccceeEEEcCCcCCCCCCCCCC-chHHH-HHccC-CCc
Q 021963 109 GNRAIAEIQFADYIF---PAFDQIVNEA---AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEA-FFCHV-PGL 179 (305)
Q Consensus 109 G~~p~~~~~~~~F~~---ra~dqi~~~~---a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs-~~d~a-~~~~i-P~l 179 (305)
|..-++. +|-.|+. -++.|-...+ ....|+. ..+..+++.+...---.+.|-+|+ -.-+. ++... .-+
T Consensus 82 Grhglf~-sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~--~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~ 158 (179)
T PF03894_consen 82 GRHGLFA-SYEAFAHIVDSMLNQHAKWLRHARELPWRA--PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVV 158 (179)
T ss_dssp T-EEEEE-EEGGGGGGGHHHHHHHHHHHHHHHH-TTS-----B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-E
T ss_pred CCccccc-ccchhHHHHHHHHHHHHHHHHHHHhCcCCC--CCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccc
Confidence 9999998 5999863 2333332211 1122221 122213343321222346777775 33343 33333 367
Q ss_pred EEEeeCCHHHHHHHHHHhHh
Q 021963 180 KVVIPRSPRQAKGLLLSCIR 199 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~ 199 (305)
.|+.|.|+.-+..++..+++
T Consensus 159 RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 159 RVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEE-SSHHHHHHHHHHHHH
T ss_pred eeecCCcHhHHHHHHHHHhc
Confidence 89999999999999998875
No 64
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=97.03 E-value=0.015 Score=49.54 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=75.3
Q ss_pred chhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEE-c
Q 021963 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-A 153 (305)
Q Consensus 76 ~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~-~ 153 (305)
.+.+.+.- --|++.+ -.|++++.+|.|.|..+-+| ++..+.++-+..+..-+.+ ++.. .+ |++++ +
T Consensus 31 ~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~~~-------~~-Pvl~i~g 98 (172)
T PF02776_consen 31 LDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AYAD-------RI-PVLVITG 98 (172)
T ss_dssp HHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HHHT-------T--EEEEEEE
T ss_pred HHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--cccc-------ee-eEEEEec
Confidence 34444442 2477776 79999999999999875554 4444455544444444442 2221 22 44443 2
Q ss_pred -CCcCCCCCCCCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccc
Q 021963 154 -PYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 154 -~~g~~~~~g~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~ 214 (305)
+.......+..| ..+..++++.+-.. .+.+.+++++...++.|++ .++|++|..|..+..
T Consensus 99 ~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~ 165 (172)
T PF02776_consen 99 QRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQE 165 (172)
T ss_dssp ESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHT
T ss_pred ccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhh
Confidence 222222234455 45556788877543 7777777777777777765 489999987776543
No 65
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.87 E-value=0.038 Score=56.23 Aligned_cols=257 Identities=13% Similarity=0.019 Sum_probs=133.1
Q ss_pred CCCcccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch
Q 021963 14 RRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL 93 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI 93 (305)
+-+|++..|++.+. .+.+..+++.+.|.++. -+.++.+-++... ...+.+.+.- .=|++.+ -
T Consensus 5 ~~~~~~~~~~~~~~----------~~~~~a~~l~~~L~~~G--V~~vFgvpG~~~~----~l~dal~~~~-~i~~i~~-r 66 (587)
T PRK06965 5 SAEFSTAESLSPPA----------ADSIGAEILMKALAAEG--VEFIWGYPGGAVL----YIYDELYKQD-KIQHVLV-R 66 (587)
T ss_pred ccccccccccCCCc----------hhccHHHHHHHHHHHcC--CCEEEecCCcchH----HHHHHHhhcC-CCeEEEe-C
Confidence 34566665554333 34444555555555432 2445554444211 1234443321 2478777 6
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CCCCCCchHH
Q 021963 94 CEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGHYHSQSPE 170 (305)
Q Consensus 94 aE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g~~hs~~d~ 170 (305)
.|++++.+|-|.|.. |...++..++++-+.-+..-+.+ + +.+ .+ ||+++........ .+.++..+..
T Consensus 67 hE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~~~-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~ 136 (587)
T PRK06965 67 HEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIAT-A-YMD-------SI-PMVVISGQVPTAAIGQDAFQECDTV 136 (587)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-hhc-------CC-CEEEEecCCCccccCCCCcccccHH
Confidence 999999999999987 65555555788876556555542 2 221 34 6665543222221 1223334445
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccccCccC-CCC----CCCcc--cCCce------
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE-VPE----DDYML--PLSEA------ 232 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~~~~~~-~~~----~~~~~--~~gk~------ 232 (305)
++++.+-.. .....+++++..+++.|++ . ++||||-.|..+.....+. .+. ..+.. .....
T Consensus 137 ~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (587)
T PRK06965 137 GITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEMRSYNPVTKGHSGQIRKAV 215 (587)
T ss_pred HHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhccccCccccccCCCCCCCCCHHHHHHHH
Confidence 677777543 4556677777777777776 2 5999998877653222110 000 00000 00000
Q ss_pred EEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeEE-EEecc----ccCCC--------HHHHHHHHhccCcEEEEe
Q 021963 233 EVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCEL-IDLKT----LIPWD--------KETVEASVRKTGRLLPRS 297 (305)
Q Consensus 233 ~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~v-I~~~~----i~P~d--------~~~i~~~~~~~~~vvvvE 297 (305)
+.+++ ..-++|++.|.....+.+++.+|.+ .|+.+-. ..=+. -.|+- .....+.+++.+.||++-
T Consensus 216 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG 295 (587)
T PRK06965 216 SLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIG 295 (587)
T ss_pred HHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 12223 3457777777765566666666654 3665320 00111 11211 122345667778888877
Q ss_pred CC
Q 021963 298 SG 299 (305)
Q Consensus 298 e~ 299 (305)
..
T Consensus 296 ~~ 297 (587)
T PRK06965 296 AR 297 (587)
T ss_pred CC
Confidence 43
No 66
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.60 E-value=0.35 Score=48.87 Aligned_cols=200 Identities=15% Similarity=0.122 Sum_probs=110.0
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--CCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++..++++.+.-++--|.+ |+.+ .+ |++++...... ...+
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~--A~~~-------~~-Pvl~i~g~~~~~~~~~~ 115 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHT--AFQD-------ST-PMILFVGQVARDFRERE 115 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCC
Confidence 367766 6999999999999998 44444444678877666555542 2222 23 66655322221 1223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccccCccCCCC-CCC---cccCCce-
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRLSVEEVPE-DDY---MLPLSEA- 232 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~~~~~~~~~-~~~---~~~~gk~- 232 (305)
..|..+..++++.+-.. .....+++++..+++.|++. ++||||-.|..+.....+ .+. ..+ .......
T Consensus 116 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~~~~-~~~~~~~~~~~~~~~~~~ 193 (557)
T PRK08199 116 AFQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAE-VPDAPPYRRVAAAPGAAD 193 (557)
T ss_pred cccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhCccc-ccccCCcCCCCCCCCHHH
Confidence 34445556778876544 34447888888888888862 699999888766443221 100 000 0000000
Q ss_pred -----EEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeEE-EE----eccccCCC--------HHHHHHHHhccCc
Q 021963 233 -----EVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCEL-ID----LKTLIPWD--------KETVEASVRKTGR 292 (305)
Q Consensus 233 -----~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~v-I~----~~~i~P~d--------~~~i~~~~~~~~~ 292 (305)
+.+.+ ..-++|++.|.....+.+++.+|.+ .|+.+-. .. ++.-.|+. .....+.++..+.
T Consensus 194 i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDl 273 (557)
T PRK08199 194 LARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADL 273 (557)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCE
Confidence 11223 3456666666654556666665544 3665432 11 11222321 2234566777788
Q ss_pred EEEEeC
Q 021963 293 LLPRSS 298 (305)
Q Consensus 293 vvvvEe 298 (305)
||++--
T Consensus 274 vl~lG~ 279 (557)
T PRK08199 274 VLAVGT 279 (557)
T ss_pred EEEeCC
Confidence 888763
No 67
>PRK08322 acetolactate synthase; Reviewed
Probab=96.57 E-value=0.13 Score=51.74 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=75.9
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ ..|++++.+|.|.|.. |...++..+.++-+.-++.-+.+ + +.+ .+ ||+++...-... ..+
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~-A-~~~-------~~-Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY-A-QLG-------GM-PMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH-H-hhc-------CC-CEEEEeccccccccCCC
Confidence 467666 7999999999999998 55445554677766555555542 2 221 23 666553222211 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYR 214 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~ 214 (305)
.++..+..++++.+-. ..+...+++++..+++.|++. ++||||-.|..+..
T Consensus 108 ~~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~ 163 (547)
T PRK08322 108 SFQIVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAA 163 (547)
T ss_pred ccccccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhh
Confidence 2333455678887755 366778889888888888872 68999988877644
No 68
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=96.43 E-value=0.092 Score=52.80 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=98.4
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|+++..+|-|.|.. |...++..++++.+.-++.-+.+ |+.+ .+ |++++....... ..+
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 105 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT--ANSE-------GD-PVVAIGGQVKRADLLKL 105 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH--Hhhc-------CC-CEEEEeCCCcccccccC
Confidence 367777 5999999999999986 65555555788876556555543 2222 23 666553221211 234
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccccCccC--CCCC-CCcccC-Cc--
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRLSVEE--VPED-DYMLPL-SE-- 231 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~~~~~~--~~~~-~~~~~~-gk-- 231 (305)
.+|..+..++++.+-.. .....+++++...++.|++. ++||||-.|..+.....+. .+.. ...... ..
T Consensus 106 ~~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (539)
T TIGR02418 106 THQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYAPKLGAAPDDA 184 (539)
T ss_pred cccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCcccccccCcccCCCCCCCCHHH
Confidence 46666777888887653 45557888888878777762 6899998887754332211 1100 000000 00
Q ss_pred ----eEEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCe
Q 021963 232 ----AEVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISC 267 (305)
Q Consensus 232 ----~~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~ 267 (305)
++.+++ ..-++|++.|.....+.+...+|.+ .|+.+
T Consensus 185 i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 185 IDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 012233 3457777777755556666666654 36653
No 69
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.42 E-value=0.17 Score=42.85 Aligned_cols=114 Identities=15% Similarity=0.039 Sum_probs=73.4
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|+++..+|-|.|.. |...++..+.++-+..++--+.+.. .+ .+ |++++....... +.+
T Consensus 39 i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~--~~-------~~-Pvl~I~g~~~~~~~~~~ 107 (164)
T cd07039 39 IEFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAK--RD-------RA-PVLAIAGQVPTDELGTD 107 (164)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHH--hc-------CC-CEEEEecCCcccccCCC
Confidence 356555 7999999999999998 5444444467776655555555322 11 23 666553322222 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 211 (305)
.+|..+...+++.+-.. ...+.+++++...++.|++ .++||||-.|..
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 108 YFQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CCcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 34445667788887654 6667788888888888876 379999965543
No 70
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.42 E-value=0.15 Score=51.96 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=109.9
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++-+.-++.-+.+ |+.+ .+ ||+++....... ..+
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A~~~-------~~-Pvl~I~g~~~~~~~~~~ 112 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVAT--AYWA-------HT-PVVLVTPQAGTKTIGQG 112 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--Hhhc-------CC-CEEEEeCCCCcccCCCC
Confidence 467777 6999999999999987 66656555778866555554442 2222 23 666554222211 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCccC-CCCC-CCcccCCce----
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVEE-VPED-DYMLPLSEA---- 232 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~~-~~~~-~~~~~~gk~---- 232 (305)
.++..+...+++.+-.. .....+++++...++.|++ .++||||-.|..+.....+. .+.. ...-+....
T Consensus 113 ~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~ 191 (588)
T PRK07525 113 GFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYFYGVIDVEIPQPVRLERGAGGEQSLA 191 (588)
T ss_pred CCcccchhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHhhhhcccccCccccCCCCCCCHHHHH
Confidence 33334556777776443 5566788888777777775 47999998887654332211 1100 000000100
Q ss_pred ---EEeeeC-CcEEEEEeChhHHHHHHHHHHHHh-cCCCeEEE-----EeccccCCC--------HHHHHHHHhccCcEE
Q 021963 233 ---EVIREG-SDITLVGWGAQLSIMEQACLDAEK-EGISCELI-----DLKTLIPWD--------KETVEASVRKTGRLL 294 (305)
Q Consensus 233 ---~~~~~g-~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI-----~~~~i~P~d--------~~~i~~~~~~~~~vv 294 (305)
+.+++. .-++|++.|.....+.+++.+|.+ .|+.+--= .++.-.|+- .....+.+++.+.||
T Consensus 192 ~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl 271 (588)
T PRK07525 192 EAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVL 271 (588)
T ss_pred HHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEE
Confidence 122333 357777777654555555555543 35543210 012222321 133446677888888
Q ss_pred EEeC
Q 021963 295 PRSS 298 (305)
Q Consensus 295 vvEe 298 (305)
++--
T Consensus 272 ~lG~ 275 (588)
T PRK07525 272 ALGT 275 (588)
T ss_pred EECC
Confidence 8773
No 71
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=96.40 E-value=0.15 Score=51.60 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=74.7
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++-+.-++.-+.+. +.+ .+ ||+++....... ..+
T Consensus 40 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~A--~~~-------~~-Pvl~i~g~~~~~~~~~~ 108 (558)
T TIGR00118 40 IEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIATA--YMD-------SI-PMVVFTGQVPTSLIGSD 108 (558)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH--Hhc-------CC-CEEEEecCCCccccCCC
Confidence 378777 6999999999999986 655555557888766665555532 221 23 556543222221 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
.++..+..++++.+-.. .....+++++..+++.|++. ++||||-.|..+.
T Consensus 109 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~ 163 (558)
T TIGR00118 109 AFQEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVT 163 (558)
T ss_pred CCcccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhh
Confidence 33334556777876553 44456788888888888873 6999998886653
No 72
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.37 E-value=0.34 Score=48.63 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=105.9
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g~ 163 (305)
||+.+ -.|++++.+|.|.|.. |...++..+.++.+.-++.-+.+ |+.+ .+ ||+++........ .+.
T Consensus 50 ~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~--A~~~-------~~-Pvl~i~g~~~~~~~~~~~ 118 (530)
T PRK07092 50 RYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT--AFKN-------HT-PLVITAGQQARSILPFEP 118 (530)
T ss_pred CEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH--Hhhc-------CC-CEEEEecCCcccccCccc
Confidence 77765 7999999999999997 54444443456655555544442 2221 23 6665532222221 222
Q ss_pred C-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccccCccCCCCC--CCcccCC-----
Q 021963 164 Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRLSVEEVPED--DYMLPLS----- 230 (305)
Q Consensus 164 ~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~~~~~~~~~~--~~~~~~g----- 230 (305)
+ |..+...+++.+-.... ...+++++...++.|++. ++||||-.|..+.....+..+.. .......
T Consensus 119 ~~~~~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (530)
T PRK07092 119 FLAAVQAAELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQPAEPLPARTVSSAVRPDPAALA 197 (530)
T ss_pred hhcccCHHHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHhhCcccccccCCCCCCCCCCHHHHH
Confidence 2 32344678888766533 447788888888887762 58999987766533322111000 0000000
Q ss_pred -ceEEeeeCC-cEEEEEeChhHHHHHHHHHHHHh-cCCCeEE--EEecccc----C-------CCHHHHHHHHhccCcEE
Q 021963 231 -EAEVIREGS-DITLVGWGAQLSIMEQACLDAEK-EGISCEL--IDLKTLI----P-------WDKETVEASVRKTGRLL 294 (305)
Q Consensus 231 -k~~~~~~g~-dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~v--I~~~~i~----P-------~d~~~i~~~~~~~~~vv 294 (305)
-.+.+++.+ -++|++.|.....+.++.++|.+ .|+.+-. ..-+.+- | .......+.+++.+.||
T Consensus 198 ~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl 277 (530)
T PRK07092 198 RLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVL 277 (530)
T ss_pred HHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEE
Confidence 011233434 45555565554555566666654 3665532 1112221 2 11233446677778888
Q ss_pred EEeC
Q 021963 295 PRSS 298 (305)
Q Consensus 295 vvEe 298 (305)
.+--
T Consensus 278 ~lG~ 281 (530)
T PRK07092 278 VIGA 281 (530)
T ss_pred EECC
Confidence 7763
No 73
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.33 E-value=0.15 Score=51.72 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=74.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|-|.|.. |...++..++++-+.-++.-+.+ |+.+ .+ |++++....... ..+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIAT--AYMD-------SI-PMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHhc-------CC-CEEEEecCCCccccCCC
Confidence 467666 7999999999999987 54455555788876555555543 2222 23 666553222222 123
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWL 212 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 212 (305)
.++.++...+++.+-.. .....+++++..+++.|++. ++||||-.|..+
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 33445556788877653 55566788888888877763 699999888765
No 74
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.27 E-value=0.22 Score=50.44 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CC
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG 161 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~ 161 (305)
+-+++.+ ..|++++.+|.|.|.. |...++.+++++-+.-++--+.+ + +.. .+ ||+++....... ..
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~-A-~~~-------~~-Pvl~ItG~~~~~~~~~ 121 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLAD-A-MID-------SL-PLVVFTGQVATSVIGS 121 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-hhc-------CC-CEEEEeccCCccccCC
Confidence 3578866 8999999999999987 55455555678876555555542 2 221 23 666553222111 12
Q ss_pred CCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccc
Q 021963 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWL 212 (305)
Q Consensus 162 g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 212 (305)
+..+..+..++++.+-.. .+...+++++..+++.|++. ++||||-.|..+
T Consensus 122 ~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 122 DAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 233345556788877554 44567788888888887762 599999888664
No 75
>PRK12474 hypothetical protein; Provisional
Probab=96.25 E-value=0.89 Score=45.54 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=109.6
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC-C-C
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-G-G 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~-~-g 162 (305)
=|++.+ -.|++++.+|-|.|.. |...++.+++++-..-++--+.+ |+.. .+ |++++.......+ + +
T Consensus 44 i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~--A~~d-------~~-Pvl~i~G~~~~~~~~~~ 112 (518)
T PRK12474 44 MRPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHN--ARRA-------AS-PIVNIVGDHAVEHLQYD 112 (518)
T ss_pred ceEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHH--Hhhc-------CC-CEEEEeccCchhhcCCC
Confidence 378777 6999999999999987 65555555688876555444432 2221 23 6665432222221 1 1
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccccCccC-C-CCCCCccc-CCc---
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLSVEE-V-PEDDYMLP-LSE--- 231 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~~~~~~-~-~~~~~~~~-~gk--- 231 (305)
.++..+..++++.+-.. .....+++++..+++.|++ .++||||-.|..+.....+. . +......+ ...
T Consensus 113 ~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i 191 (518)
T PRK12474 113 APLTSDIDGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYAAQPLRGIGPAPVAAETV 191 (518)
T ss_pred CccccCHHHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCCcCCCCCCCCCCCCHHHH
Confidence 22223445777866442 5567889999999998886 25999998887764322110 0 00000000 000
Q ss_pred ---eEEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeEE--EE-----eccc-----cCCCHHHHHHHHhccCcEE
Q 021963 232 ---AEVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCEL--ID-----LKTL-----IPWDKETVEASVRKTGRLL 294 (305)
Q Consensus 232 ---~~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~v--I~-----~~~i-----~P~d~~~i~~~~~~~~~vv 294 (305)
.+.+++ ..-++|++.|.....+.+++.+|.+ .|+.+-. .. -..+ .|+......+.++..+.||
T Consensus 192 ~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl 271 (518)
T PRK12474 192 ERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLV 271 (518)
T ss_pred HHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEE
Confidence 012233 3456666666554555565555543 4776532 10 1112 2333444556677788888
Q ss_pred EEeC
Q 021963 295 PRSS 298 (305)
Q Consensus 295 vvEe 298 (305)
++--
T Consensus 272 ~lG~ 275 (518)
T PRK12474 272 LVGA 275 (518)
T ss_pred EECC
Confidence 7653
No 76
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=96.25 E-value=0.29 Score=49.69 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=107.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|++++.+|-|.|.. |...++.++.++-+..+.--+.+. +.. .+ |++++....... +.+
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A--~~~-------~~-Pvl~I~g~~~~~~~~~~ 108 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAA--YWA-------HT-PVVIVTPEAGTKTIGLG 108 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHH--hhc-------CC-CEEEEeCCCccccCCCC
Confidence 367777 6999999999999986 655555556788765555545422 211 23 666553221211 123
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCccC-CCCC-CCcccCCc-----
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVEE-VPED-DYMLPLSE----- 231 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~~~~~-~~~~-~~~~~~gk----- 231 (305)
.++..+...+++.+-.. .....+++++...++.|++ .++||||-.|..+.....+. .+.. .+......
T Consensus 109 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (579)
T TIGR03457 109 GFQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYGEIDVEIPRPVRLDRGAGGATSLA 187 (579)
T ss_pred CCcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhhhhcccccCcccccCCCCCCHHHHH
Confidence 33334556777776442 4455678888777777765 37999998887654332211 1100 11000001
Q ss_pred --eEEeeeCC-cEEEEEeChhHHHHHHHHHHHHh-cCCCeEEE-Eeccc----cCC--------CHHHHHHHHhccCcEE
Q 021963 232 --AEVIREGS-DITLVGWGAQLSIMEQACLDAEK-EGISCELI-DLKTL----IPW--------DKETVEASVRKTGRLL 294 (305)
Q Consensus 232 --~~~~~~g~-dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI-~~~~i----~P~--------d~~~i~~~~~~~~~vv 294 (305)
++.+++.+ -++|++.|.....+.+++.+|.+ .|+.+-.- .-+.+ .|+ ......+.++..+.||
T Consensus 188 ~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil 267 (579)
T TIGR03457 188 QAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVL 267 (579)
T ss_pred HHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEE
Confidence 01223333 46677777654455555555543 36654321 11111 121 1123345677778888
Q ss_pred EEeC
Q 021963 295 PRSS 298 (305)
Q Consensus 295 vvEe 298 (305)
++-.
T Consensus 268 ~lG~ 271 (579)
T TIGR03457 268 ALGT 271 (579)
T ss_pred EECC
Confidence 8763
No 77
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.18 E-value=0.22 Score=50.46 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=87.4
Q ss_pred HHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHH
Q 021963 47 NQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIF 123 (305)
Q Consensus 47 ~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ 123 (305)
++.|.+.+++. +.|+.+-++... ..++.+.+.- .=|++.+ -.|++++.+|.|.|.. |...++.+++++-+.
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~~~----~l~dal~~~~-~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 86 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGAVL----PLYDAIYNFE-GIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGAT 86 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchH----HHHHHHhhcC-CceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 34444444443 556655444221 1234443221 1378777 6999999999999987 755555557888765
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD- 200 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~- 200 (305)
-++.-+.+ |+.+ .+ |++++....... +.+.+|..+..++++.+-.. -....+++++..+++.|++.
T Consensus 87 n~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A 155 (566)
T PRK07282 87 NAITGIAD--AMSD-------SV-PLLVFTGQVARAGIGKDAFQEADIVGITMPITKY-NYQIRETADIPRIITEAVHIA 155 (566)
T ss_pred HHHHHHHH--Hhhc-------CC-CEEEEecccccccCCCCCccccChhchhcCCCce-eEEcCCHHHHHHHHHHHHHHH
Confidence 66555542 2222 23 666553221111 12233334555677776543 33456788888888888873
Q ss_pred ----CCCEEEecccccc
Q 021963 201 ----PNPVVFFEPKWLY 213 (305)
Q Consensus 201 ----~~Pv~i~~~~~l~ 213 (305)
++||||-.|..+.
T Consensus 156 ~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 156 TTGRPGPVVIDLPKDVS 172 (566)
T ss_pred hcCCCCeEEEeCChhhh
Confidence 5999998877653
No 78
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=96.17 E-value=0.33 Score=48.99 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=72.7
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|+++..+|.|.|.. |...++..+.++-+.-++.-+.+ + +.+ .+ ||+++...-... ..+
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~-A-~~~-------~~-Pvl~i~G~~~~~~~~~~ 108 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD-A-KMD-------HA-PVIALTGQVESDMIGHD 108 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH-H-Hhc-------CC-CEEEEecCCCccccCCC
Confidence 466665 7999999999999998 44444444677776555554542 2 221 23 666553221211 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~ 214 (305)
.++..+...+++.+-.. .....+++++..+++.|++ .++||+|-.|..+..
T Consensus 109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDILR 163 (549)
T ss_pred cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhh
Confidence 23334556777776543 5566777787777777766 379999988877643
No 79
>PRK05858 hypothetical protein; Provisional
Probab=96.11 E-value=0.3 Score=49.19 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=108.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=||+.+ -.|++++.+|.|.|...-+| ++..++++-+.-+.--|.+ + +.+ .+ ||+++....+.. +.+
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~-A-~~~-------~~-Pvl~i~g~~~~~~~~~~ 111 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA-A-QFN-------QS-PLVVLGGRAPALRWGMG 111 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH-H-Hhc-------CC-CEEEEeCCCCcccCCCC
Confidence 578777 69999999999999984444 4444667765555544442 2 111 23 666554322222 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccccCccC--CCCCCC--c-cc-CCc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLSVEE--VPEDDY--M-LP-LSE 231 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~~~~~~--~~~~~~--~-~~-~gk 231 (305)
.+|..+..++++.+-. -.....+++++...++.|++ .++||+|-.|..+.....+. .+.... . -+ ...
T Consensus 112 ~~q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (542)
T PRK05858 112 SLQEIDHVPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMADDDGRPGALTELPAGPTPDP 190 (542)
T ss_pred CCcccchhhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhhhccccccccccccccCCCCCCCCH
Confidence 3444555677887765 35666778888888888886 26899998887653322111 000000 0 00 000
Q ss_pred e------EEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeE--EEE---eccccCCCH-HHHHHHHhccCcEEEEe
Q 021963 232 A------EVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCE--LID---LKTLIPWDK-ETVEASVRKTGRLLPRS 297 (305)
Q Consensus 232 ~------~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~--vI~---~~~i~P~d~-~~i~~~~~~~~~vvvvE 297 (305)
. +.+.+ ..-++|++.|.....+.+++.+|.+ .|+.+- ... ++.=.|+.. ....+.+++.+.||.+-
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG 270 (542)
T PRK05858 191 DALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVVG 270 (542)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEEC
Confidence 0 11223 3456666666655566666666654 366442 111 111122221 12335677778888876
Q ss_pred C
Q 021963 298 S 298 (305)
Q Consensus 298 e 298 (305)
-
T Consensus 271 ~ 271 (542)
T PRK05858 271 V 271 (542)
T ss_pred C
Confidence 3
No 80
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.05 E-value=0.1 Score=44.03 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEc--CCcCCCCCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA--PYGAVGHGGH 163 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~--~~g~~~~~g~ 163 (305)
-||+- .-.|...+++|+|.++.|.+|.++++.+. +..+..-+.. +.+. + .+ |++++. ++-..-.+..
T Consensus 35 i~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG-~gn~~~~l~~-a~~~-~------~~-Pvl~i~g~rg~~~~~~~~ 103 (157)
T TIGR03845 35 FRHIP-LTREEEGVGICAGAYLAGKKPAILMQSSG-LGNSINALAS-LNKT-Y------GI-PLPILASWRGVYKEKIPA 103 (157)
T ss_pred CcEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCc-HHHHHHHHHH-HHHc-C------CC-CEEEEEeccCCCCCCCcc
Confidence 35542 35888889999999999998888863333 4345444442 2101 1 22 444432 2221111111
Q ss_pred CCCch--HHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc
Q 021963 164 YHSQS--PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (305)
Q Consensus 164 ~hs~~--d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 211 (305)
+-.+. ....+..+ ++......+++|+ ..++.|++ .++|++|+.++.
T Consensus 104 q~~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 104 QIPMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred ccchhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 11111 11222222 2335666778888 87777776 479999977654
No 81
>PRK07586 hypothetical protein; Validated
Probab=96.04 E-value=0.41 Score=47.83 Aligned_cols=199 Identities=16% Similarity=0.047 Sum_probs=108.3
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g~ 163 (305)
|++.+ -.|++++.||.|.|.. |...++..++++-+..+.--+.+ |+.+ .+ |++++........ .+.
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN--ARRA-------RT-PIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH--HHhc-------CC-CEEEEecCCchhccCCCc
Confidence 67777 6999999999999987 55444544678876555444442 2222 23 6665532222221 122
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccccCccC--CCCC-CCcccCCc----
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE--VPED-DYMLPLSE---- 231 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~~~~~~--~~~~-~~~~~~gk---- 231 (305)
++..+...+++.+-. -.....+++++...++.|++ . ++||||-.|..+.....+. .+.. ........
T Consensus 110 ~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 233344567776633 25567778888887777776 2 6999998887654322110 0000 00000000
Q ss_pred --eEEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeEEEEe-------ccccC-----CCHHHHHHHHhccCcEEE
Q 021963 232 --AEVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCELIDL-------KTLIP-----WDKETVEASVRKTGRLLP 295 (305)
Q Consensus 232 --~~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI~~-------~~i~P-----~d~~~i~~~~~~~~~vvv 295 (305)
.+.+++ .+-++|++.|.....+.+++.+|.+ .|+.+-.-.. +.+-| .-.....+.++..+.||.
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~ 268 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL 268 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence 011222 4567788888766666666666654 3776532111 11222 222334456777788887
Q ss_pred Ee
Q 021963 296 RS 297 (305)
Q Consensus 296 vE 297 (305)
+-
T Consensus 269 vG 270 (514)
T PRK07586 269 VG 270 (514)
T ss_pred EC
Confidence 75
No 82
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.02 E-value=0.32 Score=49.35 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=74.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g 162 (305)
=+|+.+ -.|++++.+|-|.|.. |...++.+++++-+.-++.-+.+ |+.+ .+ ||+++........ .+
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLAD--AYMD-------SI-PLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--Hhhc-------Cc-CEEEEecCCCcccccCC
Confidence 477776 6999999999999986 65555555688876555554442 2211 23 6665532222221 22
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
.+|..+...+++.+-.. .....+++++..+++.|++. ++||||-.|..+.
T Consensus 122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 23334445777777543 44567889999999888873 6999998876653
No 83
>PRK08617 acetolactate synthase; Reviewed
Probab=95.99 E-value=0.4 Score=48.37 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=75.3
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|++++.+|.|.|.. |...++..++++-+.-++.-+.+ + +.+ .+ |++++....... ..+
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~-A-~~~-------~~-PvlvisG~~~~~~~~~~ 111 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVT-A-TAE-------GD-PVVAIGGQVKRADRLKR 111 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHH-H-hhc-------CC-CEEEEecCCcccccCCC
Confidence 467777 6999999999999998 54445454678866555555542 2 221 23 666553211111 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
.+|..+..++++.+-. ......+++++..++..|++. ++||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 166 (552)
T PRK08617 112 THQSMDNVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVV 166 (552)
T ss_pred Cccccchhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhhh
Confidence 4555666778888754 355667888888888888872 6899998887653
No 84
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.99 E-value=1.1 Score=45.61 Aligned_cols=116 Identities=19% Similarity=0.101 Sum_probs=76.2
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++.+.-+.--+.+ |+.+ .+ ||+++....... ..+
T Consensus 43 i~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK07979 43 IDHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--AYMD-------SI-PLVVLSGQVATSLIGYD 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--Hhhc-------CC-CEEEEECCCChhccCCC
Confidence 367776 6999999999999986 76666666788876555554442 2221 23 666553222222 123
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 213 (305)
.+|..+..++++.+-.. .....+++++..+++.|++ .++||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 112 AFQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred CCceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 34445556778876543 5556789999999998887 26999998877653
No 85
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.93 E-value=0.51 Score=48.39 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=72.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g 162 (305)
=||+.+ -.|++++.+|.|.|.. |...++..+.++.+.-++.-+. ++ +.+ .+ |++++........ .+
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~-~A-~~d-------~~-Pvl~i~G~~~~~~~~~~ 129 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIA-TA-QMD-------SV-PMVVITGQVPRPAIGTD 129 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH-Hhc-------CC-CEEEEecCCCccccCCC
Confidence 378888 7999999999999987 6544554467876655544444 22 222 23 6665532222221 22
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~ 213 (305)
..|..+...+++.+-.. .....+++++..+++.|++ . ++||||-.|..+.
T Consensus 130 ~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 184 (616)
T PRK07418 130 AFQETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVG 184 (616)
T ss_pred CcccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhh
Confidence 23334445677765422 3446788888888888887 2 5999998887654
No 86
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=95.92 E-value=0.47 Score=48.01 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=72.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ ..|++++.+|.|.|...-+| ++.+++++-+.-++.-+.+ + +.. .+ ||+++....... +.+
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~~~-------~~-Pvl~i~G~~~~~~~~~~ 120 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIAD-A-RLD-------SI-PLVCITGQVPASMIGTD 120 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHH-H-Hhc-------CC-CEEEEeccCCcccccCC
Confidence 477775 79999999999999984454 4444678876556555553 2 221 23 666553211111 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
..+..+..++++.+-.. ...-.+++++..+++.|++. ++||||-.|..+.
T Consensus 121 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~ 175 (564)
T PRK08155 121 AFQEVDTYGISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQ 175 (564)
T ss_pred CccccchhhhhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHH
Confidence 33344445677776543 33345788888888888762 5999998876653
No 87
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.64 E-value=0.55 Score=47.66 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=73.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++-+.-+.--+.+ |+.. .+ |++++....... ..+
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 111 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIAT--AYMD-------SI-PMVVLSGQVPSNLIGND 111 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCC
Confidence 467777 6999999999999987 65555555678766555544442 2221 23 666553222211 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 212 (305)
..|..+..++++.+-.. .....+++++...++.|++ .++||||-.|..+
T Consensus 112 ~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 34444556777776443 4455678888888888887 3699999877665
No 88
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.63 E-value=0.19 Score=42.54 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=65.2
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+|+.+ -.|++++.||-|.|.. |...++..+.++.+..+.--+.+... . .+ |++++....... +.+
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~-~--------~~-Pvl~i~g~~~~~~~~~~ 104 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYY-S--------GV-PLLVLTADRPPELRGTG 104 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHh-c--------CC-CEEEEECCCCHHhcCCC
Confidence 367666 6999999999999997 54445454677776555555543221 1 23 666554332222 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHH------HHHHHHHhHh-----CCCCEEEe
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQ------AKGLLLSCIR-----DPNPVVFF 207 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e------~~~~l~~a~~-----~~~Pv~i~ 207 (305)
.+|..+..++++.+-.. .....++++ +..+++.|+. .++||+|-
T Consensus 105 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~ 159 (162)
T cd07037 105 ANQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN 159 (162)
T ss_pred CCcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 34445556777766432 344445555 5566666665 26999994
No 89
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=95.57 E-value=0.39 Score=48.68 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~ 163 (305)
|++.+ ..|++++.+|.|.|.. |...++..++++.+.-++.-|.+. +.+ .+ ||+++....... +.+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A--~~~-------~~-Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITA--YWD-------SS-PVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHH--Hhh-------CC-CEEEEecCCCccccCCCC
Confidence 57666 7999999999999987 544444446888776665555532 221 23 666553222111 1222
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 213 (305)
++..+..++++.+-.. .+...+++++...++.|++ .++||||-.|..+.
T Consensus 114 ~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 114 FQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred ccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 3334456778877554 4445688888888888876 36999998886653
No 90
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.53 E-value=0.82 Score=46.27 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=71.9
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|++++.+|-|.|.. |...++.+++++-+.-++.-|.+.. .+ .+ ||+++....... ..+
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A~--~~-------~~-Pvl~i~G~~~~~~~~~~ 114 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIATAY--MD-------SV-PIVALTGQVPRSMIGND 114 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHh--hc-------CC-CEEEEeccCCccccCCC
Confidence 467777 7999999999999986 6555555578887666655555322 21 23 666553222211 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 212 (305)
..|..+..++++.+-.. .+.-.+++++..+++.|++ .++||||-.|..+
T Consensus 115 ~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 115 AFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred CccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 23333444666665332 3335678888888888887 2699999888654
No 91
>PRK07524 hypothetical protein; Provisional
Probab=95.53 E-value=0.49 Score=47.52 Aligned_cols=116 Identities=20% Similarity=0.148 Sum_probs=75.3
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC---CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~---~~~ 161 (305)
=|++.+ -.|++++.+|-|.|.. |...++..+.++-+.-+.--|.+ + +.+ .+ ||+++...... +.+
T Consensus 40 i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A-~~~-------~~-Pvl~i~G~~~~~~~~~~ 108 (535)
T PRK07524 40 IRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ-A-YAD-------SI-PMLVISSVNRRASLGKG 108 (535)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-Hhc-------CC-CEEEEeCCCChhhcCCC
Confidence 367777 6999999999999987 54445555678876556555543 2 221 23 66654321111 111
Q ss_pred -CCCCC-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 021963 162 -GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (305)
Q Consensus 162 -g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 213 (305)
+.+|+ .+...+++.+-. -.+...+++++...++.|++ .++||||-.|+.+.
T Consensus 109 ~~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 109 RGKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred CccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 23454 355678887754 46677788888888888886 26999998887653
No 92
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=95.51 E-value=0.9 Score=46.31 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=108.0
Q ss_pred cEEecchhHHHHHHHHHHHHhCC-CeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAMG-NRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~G-~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
|++.+ -.|++++.+|-|.|... .+| ++..++++-+.-++--+.+ + +.+ .+ |++++....... +.+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~-A-~~~-------~~-Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS-A-SAD-------SI-PILCITGQAPRARLHKE 111 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH-H-hhc-------CC-CEEEEecCCCccccCCC
Confidence 67666 68999999999999863 444 4444677765555554542 2 221 23 666553222221 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccccCccC-CCC-CCCcc--cCC-ce
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLSVEE-VPE-DDYML--PLS-EA 232 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~~~~~~-~~~-~~~~~--~~g-k~ 232 (305)
.++..+..++++.+-.. .....+++++..+++.|++ .++||||-.|..+.....+. .+. ..... +.. ..
T Consensus 112 ~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRA 190 (588)
T ss_pred cccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchhhcccCCcccccccccCCCCCCCHH
Confidence 33334456788877543 4445688888888888887 25899998887654322110 000 00000 000 00
Q ss_pred ------EEeee-CCcEEEEEeChhHHHHHHHHHHHHh-cCCCeE-EEEeccccCCC-------------HHHHHHHHhcc
Q 021963 233 ------EVIRE-GSDITLVGWGAQLSIMEQACLDAEK-EGISCE-LIDLKTLIPWD-------------KETVEASVRKT 290 (305)
Q Consensus 233 ------~~~~~-g~dv~Iia~G~~~~~aleAa~~L~~-~Gi~~~-vI~~~~i~P~d-------------~~~i~~~~~~~ 290 (305)
+.+.. ..-++|++.|.-...+.+++.+|.+ .|+.+- -..-+.+-|=+ .....+.+++.
T Consensus 191 ~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~a 270 (588)
T TIGR01504 191 QIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLES 270 (588)
T ss_pred HHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhC
Confidence 11222 3456677777665566666666654 376532 22222222222 12233556777
Q ss_pred CcEEEEeCC
Q 021963 291 GRLLPRSSG 299 (305)
Q Consensus 291 ~~vvvvEe~ 299 (305)
+.||++--.
T Consensus 271 D~iL~lG~~ 279 (588)
T TIGR01504 271 DFVFGIGNR 279 (588)
T ss_pred CEEEEECCC
Confidence 888877643
No 93
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=95.43 E-value=0.71 Score=46.83 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=68.8
Q ss_pred cEEecchhHHHHHHHHHHHHhCCCeEEEE-ecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~G~~p~~~-~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~ 163 (305)
|++.+ -.|+++..+|-|.|...-+|-++ ++.++-..-+..-+.+ |+.. .+ |++++....+.. +.+.
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFD--CHRN-------HV-PVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCCC
Confidence 57666 59999999999999984455444 3566755444444442 2221 23 666553222222 2233
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccc
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 213 (305)
++......+++.+-.. .....+++++...++.|++ .++||||-.|..+.
T Consensus 112 ~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~ 164 (574)
T PRK09124 112 FQETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVA 164 (574)
T ss_pred ccccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 4445566788866432 3336677776666666655 47999998776653
No 94
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.43 E-value=0.44 Score=48.78 Aligned_cols=117 Identities=14% Similarity=0.078 Sum_probs=75.2
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|++++.+|.|.|.. |...++..+.++-+.-++--+.+ + +.+ .+ ||+++....... ..+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~~~-------~~-PllvI~G~~~~~~~~~~ 138 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD-A-NMD-------SV-PVVAITGQVGRGLIGTD 138 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-hhc-------CC-CEEEEecCCCccccCCC
Confidence 367666 7999999999999987 75555555688876555555542 2 221 23 666553222222 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYR 214 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~ 214 (305)
..+..+..++++.+-.. .....+++++..+++.|++. ++||||-.|..+..
T Consensus 139 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 194 (612)
T PRK07789 139 AFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQ 194 (612)
T ss_pred cCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhh
Confidence 33344555777776543 44567889988888888862 69999988876543
No 95
>PLN02470 acetolactate synthase
Probab=95.40 E-value=0.39 Score=48.88 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=92.4
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEE
Q 021963 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAI 113 (305)
Q Consensus 35 ~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~ 113 (305)
.+....+..+++.+.|.++. -+.|+.+-++... ..++.+.+.- .=|++.+ -.|++++.+|.|.|.. |...+
T Consensus 8 ~~~~~~~~a~~l~~~L~~~G--V~~vFg~pG~~~~----~l~dal~~~~-~i~~i~~-rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 8 APDEPRKGADILVEALEREG--VDTVFAYPGGASM----EIHQALTRSN-CIRNVLC-RHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CCCccccHHHHHHHHHHHcC--CCEEEEcCCcccH----HHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHhCCCEE
Confidence 33343444555555554422 2456655444221 1234443221 1467777 7999999999999987 65555
Q ss_pred EEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CCCCCCchHHHHHccCCCcEEEeeCCHHHHH
Q 021963 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAK 191 (305)
Q Consensus 114 ~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~ 191 (305)
+.+++++-+.-++.-|.+. +.+ .+ ||+++........ .+.+|..+..++++.+-.. -+...+++++.
T Consensus 80 ~~~t~GPG~~N~l~gia~A--~~~-------~~-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~i~ 148 (585)
T PLN02470 80 CIATSGPGATNLVTGLADA--LLD-------SV-PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIP 148 (585)
T ss_pred EEECCCccHHHHHHHHHHH--Hhc-------CC-cEEEEecCCChhhcCCCcCcccchhhhhhhheEE-EEEcCCHHHHH
Confidence 5557888776665555532 222 23 6665532222221 2233334555777766432 33456889999
Q ss_pred HHHHHhHhC-----CCCEEEeccccc
Q 021963 192 GLLLSCIRD-----PNPVVFFEPKWL 212 (305)
Q Consensus 192 ~~l~~a~~~-----~~Pv~i~~~~~l 212 (305)
.+++.|++. ++||||-.|..+
T Consensus 149 ~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 149 RVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred HHHHHHHHHhcCCCCCeEEEEecCch
Confidence 999988873 699999887664
No 96
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=95.37 E-value=0.5 Score=47.61 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=73.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++-+.-++--+.+ + +.. .+ ||++........ +.+
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~-A-~~~-------~~-Pvl~i~g~~~~~~~~~~ 107 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD-A-LLD-------SV-PVVAITGQVSSPLIGTD 107 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-H-hhc-------CC-CEEEEecCCCccccCCC
Confidence 467776 7999999999999997 65555555788876556555543 2 211 23 666553222221 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
.++..+..++++.+-.. .+...+++++..+++.|++. ++||||-.|..+.
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 108 AFQEIDVLGLSLACTKH-SFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CCcccchhccccCceee-EEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 33334455677777554 33445788888888888872 5999998887653
No 97
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=95.29 E-value=0.74 Score=46.70 Aligned_cols=151 Identities=14% Similarity=0.013 Sum_probs=86.3
Q ss_pred HHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhh--C--CCcEEecchhHHHHHHHHHHHHhC-CCeEEEEeccc
Q 021963 47 NQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRF--G--KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFA 119 (305)
Q Consensus 47 ~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~--g--p~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~ 119 (305)
++.|.+.+++. +.++.+-++... ..++.+.+.. | -=|++.+ -.|++++.+|-|.|.. |...++.++.+
T Consensus 10 a~~l~~~L~~~GV~~iFgvpG~~~~----~l~dal~~~~~~g~~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 10 AELFLELLKELGVDYIFINSGTDYP----PIIEAKARARAAGRPLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCCcH----HHHHHHHhhhhcCCCCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 44555554443 556655544221 1234443321 1 0278777 6899999999999998 54444444678
Q ss_pred chHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCC-------CCCCC-c---hHHHHHccCCCcEEEeeCCHH
Q 021963 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG-------GHYHS-Q---SPEAFFCHVPGLKVVIPRSPR 188 (305)
Q Consensus 120 ~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~-------g~~hs-~---~d~a~~~~iP~l~V~~P~d~~ 188 (305)
+-+..+..-+.+ |+.+ .+ |++++......... ..+|. | +...+++.+-. -.....+++
T Consensus 85 PG~~N~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~~ 153 (569)
T PRK08327 85 VGTANALGGVHN--AARS-------RI-PVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVK-WDYEIRRGD 153 (569)
T ss_pred HHHHHHHHHHHH--Hhhc-------CC-CEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhh-hhcccCCHH
Confidence 876556554442 2222 23 56654322221111 11222 2 34477776644 355677888
Q ss_pred HHHHHHHHhHh-----CCCCEEEecccccc
Q 021963 189 QAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (305)
Q Consensus 189 e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 213 (305)
++...++.|++ .++||+|-.|..+.
T Consensus 154 ~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~ 183 (569)
T PRK08327 154 QIGEVVARAIQIAMSEPKGPVYLTLPREVL 183 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECcHHHH
Confidence 88888888876 26999998886653
No 98
>PRK11269 glyoxylate carboligase; Provisional
Probab=95.28 E-value=0.71 Score=47.06 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=72.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhCC--CeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG 161 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G--~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~ 161 (305)
=|++.+ -.|++++.+|-|.|... ...++..++++.+.-+.--+.+ |+.+ .+ |++++....... +.
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~ 111 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS--ASAD-------SI-PILCITGQAPRARLHK 111 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCC
Confidence 378777 69999999999999864 4444444678866555444442 2221 23 666553222211 12
Q ss_pred CCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 162 g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
+.++..+..++++.+-.. -....+++++..+++.|++. ++||||-.|..+.
T Consensus 112 ~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (591)
T PRK11269 112 EDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQ 167 (591)
T ss_pred CcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhhh
Confidence 223334456788876443 44557888888888888872 5899998886653
No 99
>PRK08266 hypothetical protein; Provisional
Probab=95.14 E-value=0.73 Score=46.33 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=73.3
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC---CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~---~~~ 161 (305)
=|++.+ ..|++++.+|-|.|.. |...++..+.++-+.-++.-+.+ + +.+ .+ ||+++...... +.+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~-A-~~~-------~~-Pvl~i~g~~~~~~~~~~ 112 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLT-A-YGC-------NS-PVLCLTGQIPSALIGKG 112 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-H-Hhh-------CC-CEEEEecCCChhhccCC
Confidence 467777 7999999999999987 54444444678876556555542 2 221 23 66655322121 111
Q ss_pred -CCCCC-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 021963 162 -GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (305)
Q Consensus 162 -g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 213 (305)
+.+|. .+...+++.+-.. .....+++++..+++.|++ .++||+|-.|..+.
T Consensus 113 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~ 170 (542)
T PRK08266 113 RGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVF 170 (542)
T ss_pred CCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhHh
Confidence 22344 3556788877553 5566677888888877776 26999998887653
No 100
>PLN02573 pyruvate decarboxylase
Probab=95.08 E-value=0.68 Score=47.13 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchH
Q 021963 46 INQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI 122 (305)
Q Consensus 46 ~~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~ 122 (305)
.++.|.+.+++. +.|+.+-++... ...+.+.+.- .=+++.+ -.|+++..+|-|.|.. | .+++.+++++-.
T Consensus 18 ~a~~l~~~L~~~Gv~~vFGvpG~~~~----~l~dal~~~~-~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~ 90 (578)
T PLN02573 18 LGRHLARRLVEIGVTDVFSVPGDFNL----TLLDHLIAEP-GLNLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGG 90 (578)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCchH----HHHHHHhhcC-CceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence 345555544443 556655444211 1233442211 1356665 6999999999999986 8 666666788866
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC---CCCCC-CCC------chHHHHHccCCCcEEEeeCCHHHHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGGH-YHS------QSPEAFFCHVPGLKVVIPRSPRQAKG 192 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~---~~~g~-~hs------~~d~a~~~~iP~l~V~~P~d~~e~~~ 192 (305)
.-+..-+.+ |+.+ .+ |++++...... +.++. ||. ..+.++++.+-. -.....+++++..
T Consensus 91 ~n~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~ 159 (578)
T PLN02573 91 LSVLNAIAG--AYSE-------NL-PVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTC-YQAVINNLEDAHE 159 (578)
T ss_pred HHHHHHHHH--HHHh-------CC-CEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEE-EEEEeCCHHHHHH
Confidence 555554442 2222 23 66655322111 22222 332 123466666533 2334456666665
Q ss_pred HHHHhHh----CCCCEEEeccccccc
Q 021963 193 LLLSCIR----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 193 ~l~~a~~----~~~Pv~i~~~~~l~~ 214 (305)
.++.|++ .++||||-.|..+..
T Consensus 160 ~l~~A~~~A~~~~gPV~l~iP~Dv~~ 185 (578)
T PLN02573 160 LIDTAISTALKESKPVYISVSCNLAA 185 (578)
T ss_pred HHHHHHHHHHhcCCCEEEEeehhhhc
Confidence 5555554 579999988877643
No 101
>PRK08611 pyruvate oxidase; Provisional
Probab=95.07 E-value=0.65 Score=47.17 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=74.2
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=|++.+ -.|++++.+|.|.|.. |...++.+++++-+..++--+.+ |+.+ .+ |++++....... +.+
T Consensus 44 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~--A~~~-------~~-Pvl~ItG~~~~~~~~~~ 112 (576)
T PRK08611 44 IKFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYD--AKMD-------HV-PVLALAGQVTSDLLGTD 112 (576)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCcccccCCC
Confidence 367665 7999999999999986 64445454678876556555542 2222 23 666553222211 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~ 214 (305)
..|..+...+++.+-.. .....+++++...+..|++ .++||||-.|..+..
T Consensus 113 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~~ 167 (576)
T PRK08611 113 FFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPA 167 (576)
T ss_pred CccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhhh
Confidence 34444556788877543 4456678888877777665 479999988876643
No 102
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.07 E-value=0.79 Score=38.43 Aligned_cols=144 Identities=14% Similarity=0.054 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccc--h
Q 021963 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--Y 121 (305)
Q Consensus 44 ~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~--F 121 (305)
+.+.+.|.+.+ . +.+++ .|.+... ..-+.....|.+|+..|-- -..+..|.|++++-.+|++++ .++ |
T Consensus 2 ~~~~~~l~~~l-~-d~~vv--~d~G~~~----~~~~~~~~~~~~~~~~gsm-G~~lp~AiGa~~a~~~~Vv~i-~GDG~f 71 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIV--STTGYAS----RELYDVQDRDGHFYMLGSM-GLAGSIGLGLALGLSRKVIVV-DGDGSL 71 (157)
T ss_pred HHHHHHHHHhC-C-CCEEE--eCCCHhH----HHHHHhhcCCCCEEeecch-hhHHHHHHHHHhcCCCcEEEE-ECchHH
Confidence 34555666555 3 33444 3443211 1122232337899875522 223457788877644788886 555 4
Q ss_pred HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--CCCCCCCCchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhH
Q 021963 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (305)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~~~g~~hs~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~ 198 (305)
++-.-+ +. -++..+ .+|+ .+|+...++.. +.....+..-|. .+...+ ++.-+...+++|+...+++++
T Consensus 72 ~m~~~e-l~-t~~~~~-----~~~i-~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~ 142 (157)
T cd02001 72 LMNPGV-LL-TAGEFT-----PLNL-ILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLL 142 (157)
T ss_pred HhcccH-HH-HHHHhc-----CCCE-EEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHH
Confidence 333322 21 122211 0355 44444433322 111111112233 333333 555566789999999999999
Q ss_pred hCCCCEEE
Q 021963 199 RDPNPVVF 206 (305)
Q Consensus 199 ~~~~Pv~i 206 (305)
+.++|++|
T Consensus 143 ~~~gp~vi 150 (157)
T cd02001 143 ATTGPTLL 150 (157)
T ss_pred hCCCCEEE
Confidence 99999998
No 103
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.99 E-value=0.5 Score=47.91 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=74.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC----C
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----H 160 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~----~ 160 (305)
=|++.+ -.|+++..+|.|.|.. |...++.++.++.+.-+..-|.+ + +.+ .+ ||+++....... .
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~~~-------~~-Pvl~I~G~~~~~~~~~~ 116 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-A-TTN-------CF-PMIMISGSSEREIVDLQ 116 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-H-Hhc-------CC-CEEEEEccCCccccccc
Confidence 477777 6999999999999997 55555555678876556555553 2 222 23 666543222211 1
Q ss_pred CCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccc
Q 021963 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYR 214 (305)
Q Consensus 161 ~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~ 214 (305)
.+.++..+..++++.+-.. .+...+++++...++.|++. ++||||-.|..+..
T Consensus 117 ~~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 174 (569)
T PRK09259 117 QGDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLA 174 (569)
T ss_pred CCCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhh
Confidence 1223334556788877553 55567888888888888762 69999988876543
No 104
>PRK07064 hypothetical protein; Provisional
Probab=94.96 E-value=0.7 Score=46.48 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=73.1
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC---CCC-
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG- 161 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~---~~~- 161 (305)
|++.+ ..|+++..+|.|.|.. |...++.++.++-+.-++.-+.+.. .+ .+ ||+++...... +.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A~--~~-------~~-Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEAL--TA-------GT-PLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHHH--hc-------CC-CEEEEeCCCCcccccCCC
Confidence 67666 7999999999999987 6555554467887655655555322 11 23 66655321111 112
Q ss_pred CCCCC-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccc
Q 021963 162 GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWL 212 (305)
Q Consensus 162 g~~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 212 (305)
+.+|+ .+...+++.+-.. .+...+++++..+++.|++ . ++||||-.|..+
T Consensus 112 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 112 GYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred cccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 12343 4667888877653 5556778888877777776 2 799999887665
No 105
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.93 E-value=0.46 Score=48.50 Aligned_cols=149 Identities=12% Similarity=0.054 Sum_probs=87.8
Q ss_pred HHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHH
Q 021963 47 NQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIF 123 (305)
Q Consensus 47 ~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ 123 (305)
++.|.+.+++. +.++.+-++... ...+.+.+.- .=||+.+ -.|++++.+|-|.|.. |...++.+++++-+.
T Consensus 14 a~~l~~~L~~~GV~~vFGvpG~~~~----~l~dal~~~~-~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 87 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGYPGGAVL----PIYDEIFQQD-DIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGAT 87 (595)
T ss_pred HHHHHHHHHHCCCCEEEEccCcchH----HHHHHHhhcC-CCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHh
Confidence 45555555443 445554444211 1234443321 2478777 7999999999999976 765566657888765
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD- 200 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~- 200 (305)
.+.--|.+ |+.+ .+ ||+++....... +.+.+|..+..++++.+-.. .+...+++++..+++.|++.
T Consensus 88 N~l~gia~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A 156 (595)
T PRK09107 88 NAVTPLQD--ALMD-------SI-PLVCITGQVPTHLIGSDAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVA 156 (595)
T ss_pred HHHHHHHH--Hhhc-------CC-CEEEEEcCCChhhcCCCCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHh
Confidence 55554442 2222 23 666553222211 12233334445677766432 44467888888888888873
Q ss_pred ----CCCEEEeccccc
Q 021963 201 ----PNPVVFFEPKWL 212 (305)
Q Consensus 201 ----~~Pv~i~~~~~l 212 (305)
++||||-.|..+
T Consensus 157 ~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 157 TSGRPGPVVVDIPKDV 172 (595)
T ss_pred cCCCCceEEEecCCCh
Confidence 699999888765
No 106
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.78 E-value=3.7 Score=41.64 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=73.0
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--CCCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~~~g 162 (305)
=+++.+ ..|++++.+|.|.|.. |...++..+.++.+..++--|.+ |+.. .+ |++++...... ...+
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 118 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE--ALKA-------SV-PIVALVQDVNRDQTDRN 118 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCC
Confidence 467777 5999999999999987 54444444577776555555543 2222 23 66654321111 1223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~ 214 (305)
..+..+...+++.+-.. .....+++++...++.|++ . ++||||-.|..+..
T Consensus 119 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~ 174 (578)
T PRK06112 119 AFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLT 174 (578)
T ss_pred CccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHhh
Confidence 33344556788877543 4466777888777777776 2 58999988876543
No 107
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=94.74 E-value=1.1 Score=45.68 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=70.2
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCC--CC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG--GH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~--g~ 163 (305)
|++.+ -.|++++.+|.|.|.. |...++.+++++-+.-+..-|.+ |+.+ .+ |++++......... +.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT--AQMD-------SV-PLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCCC
Confidence 57776 6999999999999987 65555555678876555544442 2222 23 66655322222111 22
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccc
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWL 212 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 212 (305)
++..+..++++.+-. -.....+++++..+++.|++. ++||||-.|..+
T Consensus 122 ~q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 122 FQEVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ccccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 333333456665532 244556888888888888862 589999888765
No 108
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.67 E-value=0.71 Score=46.74 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=75.5
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g 162 (305)
=+++.+ -.|++++.+|.|.|.. |...++..++++-+.-+..-+.+ |+.+ .+ ||+++........ .+
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 110 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLAT--AYMD-------SI-PLVLISGQVPNSLIGTD 110 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCC
Confidence 367666 6999999999999986 65555555788876556555553 2221 23 6665532222211 22
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
..|..+..++++.+-.. .....+++++..+++.|++. ++||||-.|..+.
T Consensus 111 ~~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~ 165 (563)
T PRK08527 111 AFQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVT 165 (563)
T ss_pred CCcccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 33344555777776543 45668999999999998872 5899998886653
No 109
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.61 E-value=0.59 Score=47.34 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=103.6
Q ss_pred hhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCC
Q 021963 77 TGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155 (305)
Q Consensus 77 ~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~ 155 (305)
+.|.+. .-||+.+ --||++..+|.|.|.. |..-+|-.+.+|...-+..-|- + |+++ .+ |++++...
T Consensus 33 dal~~~--~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla-~-A~~d-------~~-Pll~itGq 99 (550)
T COG0028 33 DALYDS--GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLA-D-AYMD-------SV-PLLAITGQ 99 (550)
T ss_pred HHHHhC--CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-H-HHhc-------CC-CEEEEeCC
Confidence 444443 2578777 6999999999999997 6655555567777655544444 2 2222 23 66655322
Q ss_pred cCCC--CCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccccCccCC-----CCC
Q 021963 156 GAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRLSVEEV-----PED 223 (305)
Q Consensus 156 g~~~--~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~~~~~~~~-----~~~ 223 (305)
-... +-+.+|..+..++++.+-.. .+...+++|+-.+++.|++. ++||+|-.|+.+.....+.. ...
T Consensus 100 v~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~ 178 (550)
T COG0028 100 VPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILP 178 (550)
T ss_pred ccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccc
Confidence 2222 22344445566788877553 67778889999999999872 59999988877654331110 000
Q ss_pred CCcccCCc-------eEEeeeC-CcEEEEEeChhHHHHHHHHHHHHhc-CCC
Q 021963 224 DYMLPLSE-------AEVIREG-SDITLVGWGAQLSIMEQACLDAEKE-GIS 266 (305)
Q Consensus 224 ~~~~~~gk-------~~~~~~g-~dv~Iia~G~~~~~aleAa~~L~~~-Gi~ 266 (305)
.+...... ++.+.+. +-+++++.|.....|.+.+.+|.++ |+-
T Consensus 179 ~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~P 230 (550)
T COG0028 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAP 230 (550)
T ss_pred cCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCC
Confidence 11111111 1122233 4567777777777666766666443 554
No 110
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=94.61 E-value=0.053 Score=44.65 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCc--hHH
Q 021963 93 LCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ--SPE 170 (305)
Q Consensus 93 IaE~~~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~--~d~ 170 (305)
-.|..-+|+++|+.++|.+|..-++.+. +......+. ++-.. | ++|. .+++.|+|-..-+-.++-.. .--
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsG-lGNsiNal~-SL~~t-y----~iPl-~ml~ShRG~~~E~i~AQVpmGr~~~ 120 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSG-LGNSINALA-SLYVT-Y----KIPL-LMLASHRGVLKEGIEAQVPMGRALP 120 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccC-cchHHHHHH-HHHHH-h----ccch-hhhhhccchhhcCCccccccchhhH
Confidence 4789999999999999999988764443 333222222 11111 1 2576 77777775432211111100 011
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhH----hCCCCEEEeccc
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPK 210 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~ 210 (305)
.+++.+ ++.-+.|-.|+|+..++..+. +...||.++.+-
T Consensus 121 kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 121 KILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred HHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 233333 667788899999776666554 468999986543
No 111
>PRK06154 hypothetical protein; Provisional
Probab=94.37 E-value=1.2 Score=45.17 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=86.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-C-CeE-EE
Q 021963 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-G-NRA-IA 114 (305)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G-~~p-~~ 114 (305)
+.++..+++.+.|.++.- +.++.+ + + .. ..+.+.+ - .=|++.+ -.|++++.+|.|.|.. | -+| ++
T Consensus 18 ~~~~~a~~l~~~L~~~GV--~~vFGi-p--~--~~--l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~ 85 (565)
T PRK06154 18 KTMKVAEAVAEILKEEGV--ELLFGF-P--V--NE--LFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGVF 85 (565)
T ss_pred CcccHHHHHHHHHHHcCC--CEEEeC-c--C--HH--HHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEEE
Confidence 344445555555554332 334433 2 1 11 2355532 2 2577776 7999999999999985 3 354 44
Q ss_pred EecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHH
Q 021963 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (305)
Q Consensus 115 ~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l 194 (305)
..++++-+.-+..-+.+ |+.+ .+ |++++.........+.....+...+++.+-. -.....+++++...+
T Consensus 86 ~~t~GPG~~N~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~~d~~~~~~~vtk-~~~~v~~~~~~~~~i 154 (565)
T PRK06154 86 AVQYGPGAENAFGGVAQ--AYGD-------SV-PVLFLPTGYPRGSTDVAPNFESLRNYRHITK-WCEQVTLPDEVPELM 154 (565)
T ss_pred EECCCccHHHHHHHHHH--Hhhc-------CC-CEEEEeCCCCcccccCCCCcchhhhHhhcce-eEEECCCHHHHHHHH
Confidence 34678876556555542 2222 23 6665532221111111111233467776644 355677888888888
Q ss_pred HHhHh-----CCCCEEEeccccccc
Q 021963 195 LSCIR-----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 195 ~~a~~-----~~~Pv~i~~~~~l~~ 214 (305)
+.|++ .++||||-.|..+..
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~Dv~~ 179 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPVDVLA 179 (565)
T ss_pred HHHHHHHhcCCCceEEEecchHHhh
Confidence 87776 369999988876543
No 112
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=94.27 E-value=0.7 Score=39.35 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=61.9
Q ss_pred CCCcEE-ecchhHH-HHHHHHHHHHhCCCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 84 GKSRVF-NTPLCEQ-GIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 84 gp~r~~-~~gIaE~-~~v~~AaGlA~~G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
.|.+|+ +.|..-. ..++.|.|++++--+|++++ .++ |.+-..| +.. +...+ +|+ .+|+..-++..-
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i-~GDGsf~m~~~e-L~t-a~~~~------l~v-~ivVlNN~~~g~ 109 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATDKPTVLL-TGDLSFLHDLNG-LLL-GKQEP------LNL-TIVVINNNGGGI 109 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCCCCEEEE-EehHHHHHhHHH-HHh-ccccC------CCe-EEEEEECCCCch
Confidence 377887 4443222 24577788777645777776 555 4333322 221 22222 465 455443333210
Q ss_pred --CC-----CC-----C---CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --HG-----GH-----Y---HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --~~-----g~-----~---hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.. +. . +..+-.++.+++ |+.-+.-.+++|+...++++++.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 00 0 111222344444 56667778999999999999999999988
No 113
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.16 E-value=1.3 Score=37.37 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=66.7
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC---C
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH---G 161 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~---~ 161 (305)
=||+.+ -.|++++.+|.|.|... +| ++..+.++-+..+..-+.+.. .+ .+ |++++........ +
T Consensus 36 i~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~--~~-------~~-Pvl~i~g~~~~~~~~~~ 103 (162)
T cd07038 36 LRWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAY--AE-------HV-PVVHIVGAPSTKAQASG 103 (162)
T ss_pred ceEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHH--Hc-------CC-CEEEEecCCCccccccc
Confidence 356555 69999999999999986 44 333356676656666565332 21 23 6665533222111 1
Q ss_pred CCCC-----C-chH-HHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecc
Q 021963 162 GHYH-----S-QSP-EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEP 209 (305)
Q Consensus 162 g~~h-----s-~~d-~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 209 (305)
...| + ++| .++++.+-.. .....++++...+++.|++ .++||+|-.|
T Consensus 104 ~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 104 LLLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred cceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 1111 1 233 6778776443 4455677888888877776 3799999444
No 114
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=94.07 E-value=1.1 Score=45.18 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=80.3
Q ss_pred HHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhhCC-CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchH
Q 021963 47 NQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRFGK-SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI 122 (305)
Q Consensus 47 ~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~gp-~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~ 122 (305)
++.|.+.+++. +.++.+-.+... ..++.+. +. + -|++.+ -.|+++.-+|-|.|.. |...++..+.++-.
T Consensus 3 ~~~l~~~L~~~Gv~~vFGvpG~~~~----~l~~al~-~~-~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 75 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGIPGDFAL----PFFKVIE-ET-GILPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGA 75 (535)
T ss_pred HHHHHHHHHHcCCCEEEECCCcccH----HHHHHHh-hC-CCCeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHH
Confidence 44555555433 445554444221 1233443 33 2 377776 7999999999999997 65556555677776
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC---CCCC-CCCc---hH-HHHHccCCCcEEEeeCCHHHHH---
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---HGGH-YHSQ---SP-EAFFCHVPGLKVVIPRSPRQAK--- 191 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~---~~g~-~hs~---~d-~a~~~~iP~l~V~~P~d~~e~~--- 191 (305)
..+..-|.. |+.+ .+ |++++....... .+.. +|+. .| ..+++.+-.. .....+++++.
T Consensus 76 ~n~~~gia~--A~~~-------~~-Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~ 144 (535)
T TIGR03394 76 FNMVNAIAG--AYAE-------KS-PVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEI 144 (535)
T ss_pred HhhhhHHHH--Hhhc-------CC-CEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHH
Confidence 555554442 2222 23 666553222221 1221 3432 12 4667765332 22234444444
Q ss_pred -HHHHHhHhCCCCEEEeccccccc
Q 021963 192 -GLLLSCIRDPNPVVFFEPKWLYR 214 (305)
Q Consensus 192 -~~l~~a~~~~~Pv~i~~~~~l~~ 214 (305)
.+++.|+..++||||-.|..+..
T Consensus 145 ~~A~~~a~~~~gPv~i~iP~Dv~~ 168 (535)
T TIGR03394 145 ARVLGSARELSRPVYLEIPRDMVN 168 (535)
T ss_pred HHHHHHHHHCCCCEEEEechhhcc
Confidence 45555555689999988876543
No 115
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=93.83 E-value=2 Score=36.50 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=66.1
Q ss_pred hHhhhCCCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEc
Q 021963 79 LADRFGKSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (305)
Q Consensus 79 ~~~~~gp~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~ 153 (305)
+..+. |.+|+..+. .=. ..++.|.|++++. -++++++ .++ |++-..| +. .+...+ +|+ .+|+..
T Consensus 36 ~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i-~GDG~f~~~~~e-l~-t~~~~~------lp~-~~iv~N 104 (178)
T cd02014 36 LRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIAL-SGDGGFAMLMGD-LI-TAVKYN------LPV-IVVVFN 104 (178)
T ss_pred cccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhhHHH-HH-HHHHhC------CCc-EEEEEE
Confidence 33344 677877542 221 2556777777664 3566665 555 5544444 33 244444 455 445443
Q ss_pred CCcCC--------CCCC---CC-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 154 PYGAV--------GHGG---HY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 154 ~~g~~--------~~~g---~~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
-++.. ..+. .. +..+-.++..+. |+..+...+++|+...++++++.++|++|
T Consensus 105 N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~li 168 (178)
T cd02014 105 NSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVI 168 (178)
T ss_pred CCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 33221 0111 11 112223455555 77888889999999999999999999998
No 116
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.69 E-value=0.88 Score=45.95 Aligned_cols=117 Identities=13% Similarity=-0.003 Sum_probs=73.8
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC----C
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----H 160 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~----~ 160 (305)
=|++.+ -.|++++.+|-|.|.. |...++.++.++...-+.--+.+ |+.+ .+ ||+++....... .
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 109 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATTN-------CF-PMIMISGSSERHIVDLQ 109 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH--HHhc-------CC-CEEEEEccCCccccccC
Confidence 377777 6999999999999987 65445554677766555554442 2222 23 556543211111 1
Q ss_pred CCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccc
Q 021963 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (305)
Q Consensus 161 ~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~ 214 (305)
.+.++..+..++++.+-.. .....+++++..+++.|++ .++||||-.|..+..
T Consensus 110 ~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~ 167 (554)
T TIGR03254 110 QGDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLG 167 (554)
T ss_pred CCCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhh
Confidence 1223334556888877553 5667788888888887776 268999988876543
No 117
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=93.41 E-value=2.9 Score=35.65 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=62.7
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhC-CCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~-G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++ .-++++++ .++ |.+...| +.. +...+ +|+ .+|+...++...
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~m~~~e-L~t-a~~~~------l~v-i~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAV-SGDGGFMMNSQE-LET-AVRLK------IPL-VVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhHHHH-HHH-HHHHC------CCe-EEEEEECCcchH
Confidence 788886532 112344577777765 44677776 555 4433322 222 33333 455 444443333210
Q ss_pred C-------CC-CCC---CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 H-------GG-HYH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 ~-------~g-~~h---s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
. .+ ..+ ..-|. ++.+.+ ++.-+.-.+++|+...++++++.++|.+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 165 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI 165 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 00 011 11132 344555 67778889999999999999999999998
No 118
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=93.31 E-value=2.2 Score=42.94 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=69.7
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-C--CCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G--HGG 162 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~-~--~~g 162 (305)
||+.+ -.|++++.+|-|.|.. | +.++..+.++.+.-+.--+.+ |+.+ .+ ||+++...... . .+.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--SYAE-------HL-PVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--Hhhc-------cC-CEEEEECCCCcchhhcCc
Confidence 67666 7999999999999997 7 566655688876555554543 2222 23 66655321111 0 000
Q ss_pred -CCC-----C-chHHHHHccCCCc-EEEeeCC-HHHHHHHHHHhHhCCCCEEEecccccccc
Q 021963 163 -HYH-----S-QSPEAFFCHVPGL-KVVIPRS-PRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215 (305)
Q Consensus 163 -~~h-----s-~~d~a~~~~iP~l-~V~~P~d-~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~ 215 (305)
.|| . |+...+++.+-.. .+..|.+ +.++..+++.|+..++||||-.|..+...
T Consensus 109 ~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~ 170 (539)
T TIGR03393 109 LLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAK 170 (539)
T ss_pred eeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCC
Confidence 111 1 1223444433211 1225666 78888899999888899999888776443
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.31 E-value=0.93 Score=46.14 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=73.3
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=+++.+ -.|++++.+|-|.|.. |...++.+++++-+.-++.-+.+.. .+ .+ ||+++....... +.+
T Consensus 39 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~--~~-------~~-Pvl~I~G~~~~~~~~~~ 107 (586)
T PRK06276 39 LIHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIATAY--AD-------SS-PVIALTGQVPTKLIGND 107 (586)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHH--hc-------CC-CEEEEeCCCCccccCCC
Confidence 367777 6999999999999987 6554555567887655655555322 21 23 666553211211 222
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 213 (305)
..+..+..++++.+-.. ...-.+++++...++.|++. ++||||-.|..+.
T Consensus 108 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 108 AFQEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred CCccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHH
Confidence 33334556777776543 34456778888888888873 6999998887653
No 120
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.25 E-value=1.5 Score=44.77 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=86.0
Q ss_pred HHHHHHHHhc--CCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHH
Q 021963 47 NQALHIALET--DPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIF 123 (305)
Q Consensus 47 ~~~L~~l~~~--~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ 123 (305)
+++|.+.+++ -+.|+.+-++... ...+.+.+....=+|+.+ -.|++++.+|-|.|.. |...++..++++-+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG~~~~----~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYPGDGIN----GLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCchH----HHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 3444444443 2556666555221 123445332112467777 6999999999999987 655555557888776
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh--
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-- 199 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-- 199 (305)
-+..-+.+ |+.+ .+ |++++....... ..+.++..+..++++.+-.--.....+++++...++.|++
T Consensus 81 n~~~gi~~--A~~d-------~v-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A 150 (597)
T PRK08273 81 HLLNGLYD--AKLD-------HV-PVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTA 150 (597)
T ss_pred HHHHHHHH--HHhc-------CC-CEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHH
Confidence 66555542 2222 23 666553221111 1122333444567766531124456677777777766665
Q ss_pred --CCCCEEEeccccccc
Q 021963 200 --DPNPVVFFEPKWLYR 214 (305)
Q Consensus 200 --~~~Pv~i~~~~~l~~ 214 (305)
.++||||-.|..+..
T Consensus 151 ~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 151 LAERTVTAVILPNDVQE 167 (597)
T ss_pred hhCCCCEEEEeCcchhh
Confidence 479999988876543
No 121
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.22 E-value=1.2 Score=45.05 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=73.1
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC--CCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~--~g~ 163 (305)
|++.+ -.|++++.+|-|.|.. |...++.++.++-+.-++--+.+. +.+ .+ ||+++........ .+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A--~~~-------~~-Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIATA--YTD-------SV-PLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHH--hhc-------CC-CEEEEecCCCccccCCCc
Confidence 67777 7999999999999987 655455556787765555555432 111 23 6665532222221 223
Q ss_pred CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccc
Q 021963 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 212 (305)
.+..+..++++.+-. -.....+++++..+++.|++ .++||||-.|..+
T Consensus 113 ~q~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 113 FQECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred ccccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 333455677777644 25556788888888888877 2699999888765
No 122
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.20 E-value=2.4 Score=43.10 Aligned_cols=116 Identities=9% Similarity=-0.037 Sum_probs=70.3
Q ss_pred CcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=||+.+ -.|++++.+|-|.|.. |...++..++++-+..+.--+.+. +.+ .+ |++++....... ..+
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A--~~~-------~~-Pvl~I~G~~~~~~~~~~ 107 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDA--KED-------HV-PVLALVGQVPTTGMNMD 107 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHH--hhc-------CC-CEEEEecCCccccCCCC
Confidence 367776 6999999999999986 544455556788765665555432 222 23 666553222222 122
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 213 (305)
.+|..+..++++.+-.. .....+++++...++.|++ .++||||-.|..+.
T Consensus 108 ~~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 108 TFQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred CcceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 33334556777766332 2345566666666665554 58999998886653
No 123
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.05 E-value=2.8 Score=38.94 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhH---HHHHHHHHHHHhCC-CeEEEEec
Q 021963 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCE---QGIVGFAIGLAAMG-NRAIAEIQ 117 (305)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE---~~~v~~AaGlA~~G-~~p~~~~~ 117 (305)
...++.++|.++....++.++ ..|++-.+ +. | +|++.+--- -..+.+|.|++++. -++++++
T Consensus 12 i~~~~~~a~~~l~~~p~d~ii-vsdiGc~~----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai- 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVV-VSGIGCSA----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV- 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EECCCccc----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE-
Confidence 456778888888665556544 45766211 12 3 444432211 24566888887774 4677775
Q ss_pred ccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCC--cCCCC-C-CCC----------CC-------chHHHHHc
Q 021963 118 FAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY--GAVGH-G-GHY----------HS-------QSPEAFFC 174 (305)
Q Consensus 118 ~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~--g~~~~-~-g~~----------hs-------~~d~a~~~ 174 (305)
.++ |..-....+.+ ++..+ +++ .+|+..-. |..++ . +++ +. ...+++..
T Consensus 78 ~GDG~f~~mg~~eL~t-A~r~n------l~I-~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~ 149 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVA-AGRRN------VDI-TVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIAL 149 (287)
T ss_pred eCchHHHhccHHHHHH-HHHhC------cCe-EEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhC
Confidence 555 33233444443 33434 455 44444321 11111 0 000 00 01223333
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 175 HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 175 ~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
...-.-.....+++|+..++++|+++++|++|
T Consensus 150 g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 150 GYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 33322233369999999999999999999998
No 124
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.02 E-value=1.2 Score=37.69 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=63.8
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccchH-HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~ 160 (305)
|.+|+..+. +=-..+++|.|++++. -++++++ .++.. +.....+. .++..+ +|+ .+|+...++....
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i-~GDG~f~~~~~el~-ta~~~~------lpv-~ivv~NN~~~~~~ 108 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLV-EGDGAFGFSGMELE-TAVRYN------LPI-VVVVGNNGGWYQG 108 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEE-EcchhhcCCHHHHH-HHHHcC------CCE-EEEEEECcccccc
Confidence 788887542 2223566788888875 3677775 55532 22233333 344444 465 4554443332110
Q ss_pred ----C----CC-----CCCchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 161 ----G----GH-----YHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 161 ----~----g~-----~hs~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
. +. .+..-|. .+.++. |+..+.-.+.+|+..+++++...++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 109 LDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALI 167 (172)
T ss_pred hhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 0 00 0111232 344444 66777778999999999999998999988
No 125
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=92.90 E-value=1.4 Score=44.67 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcC--CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccc
Q 021963 44 SAINQALHIALETD--PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFAD 120 (305)
Q Consensus 44 ~a~~~~L~~l~~~~--~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~ 120 (305)
.-.++.|.+.+++. +.++.+-++... ..++.+.+.- .=|++.+ ..|++++.+|-|.|.. |...++..++++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~----~l~~~l~~~~-~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRST----PLTLAAAEHP-RLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccH----HHHHHHHhCC-CcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc
Confidence 34556666655554 455555444211 1234442211 1367776 6999999999999987 544445557888
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--CCCCCCCCchHHHHHccCCCcEEEeeCCHH-----HHHHH
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHSQSPEAFFCHVPGLKVVIPRSPR-----QAKGL 193 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~-----e~~~~ 193 (305)
-+.-++.-+.+ + +.+ .+ |++++....+. -+.+.+|..+..++++.+-...+-.|.... .+..+
T Consensus 83 G~~N~l~~i~~-A-~~~-------~~-Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~ 152 (568)
T PRK07449 83 AVANLYPAVIE-A-GLT-------GV-PLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTT 152 (568)
T ss_pred HHHhhhHHHHH-H-hhc-------CC-cEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHH
Confidence 77666655552 2 221 23 66655322221 123445556667888877644555565511 12335
Q ss_pred HHHhHh----CCCCEEEeccccc
Q 021963 194 LLSCIR----DPNPVVFFEPKWL 212 (305)
Q Consensus 194 l~~a~~----~~~Pv~i~~~~~l 212 (305)
++.+.. .++||||-.|..+
T Consensus 153 ~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 153 IDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred HHHHHHhcCCCCCCEEEeCCCCC
Confidence 555332 4799999877653
No 126
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.85 E-value=2.5 Score=43.03 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred CcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCC
Q 021963 86 SRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (305)
Q Consensus 86 ~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g 162 (305)
=||+.+ -.|++++.+|-|.|...-+| ++..+.++-+..++--+.+ |+.+ .+ |++++....+.. +.+
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 110 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--AHRS-------GA-PVLAIASHIPSAQIGSG 110 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--HHhc-------CC-CEEEEeCCCCccccCCC
Confidence 357777 59999999999999984444 4443566766555544442 2222 23 666553222222 223
Q ss_pred CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccc
Q 021963 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (305)
Q Consensus 163 ~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 213 (305)
.+|...+..+++.+-. -.+...+++++...++.|++ .++||+|-.|..+.
T Consensus 111 ~~Qe~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~ 164 (578)
T PRK06546 111 FFQETHPDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIA 164 (578)
T ss_pred CccccChhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhh
Confidence 3444455677776644 35667778888877777776 47999998776653
No 127
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.52 E-value=3.6 Score=38.06 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCC-CeEEEEecccc
Q 021963 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (305)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G-~~p~~~~~~~~ 120 (305)
...++.++|.++....++.++ ..|.+-.+ ....+.+-+++ +--. -..+.+|.|++++- -++++.+ .++
T Consensus 18 il~al~~al~~l~~~~~~~iv-vsdiGc~~---~~~~~~~~~~~--~~~~----G~alp~A~GaklA~Pd~~VV~i-~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVV-VSGIGCSS---NLPEFLNTYGI--HGIH----GRVLPIATGVKWANPKLTVIGY-GGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EECCchhh---hhhhhccCCCc--cccc----ccHHHHHHHHHHHCCCCcEEEE-ECC
Confidence 456777777776655556544 45655111 12222211111 1112 36678888888873 3566665 555
Q ss_pred h--HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCc--CCCCC--CCC----------CC-----chHHHHHc--cCC
Q 021963 121 Y--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG--AVGHG--GHY----------HS-----QSPEAFFC--HVP 177 (305)
Q Consensus 121 F--~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g--~~~~~--g~~----------hs-----~~d~a~~~--~iP 177 (305)
. ..-....+.+ ++..+ .++ .+|+..-.. ..++. +++ .. .+...+.+ ..+
T Consensus 87 G~~f~ig~~eL~t-A~rrn------~~i-~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~ 158 (279)
T PRK11866 87 GDGYGIGLGHLPH-AARRN------VDI-TYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGAT 158 (279)
T ss_pred hHHHHccHHHHHH-HHHHC------cCc-EEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCC
Confidence 4 4555666664 44444 455 455443221 11110 000 00 12223333 344
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 178 ~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+....+.+++|+..++++|++.++|++|
T Consensus 159 ~Va~~~~~~~~~l~~~l~~Al~~~Gps~I 187 (279)
T PRK11866 159 FVARGFSGDVKHLKEIIKEAIKHKGFSFI 187 (279)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45566679999999999999999999999
No 128
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.24 E-value=2.7 Score=39.21 Aligned_cols=37 Identities=11% Similarity=-0.120 Sum_probs=31.9
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 170 ~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+......|-+-..+|+++.++...+++|++.++|.+|
T Consensus 166 i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I 202 (300)
T PRK11864 166 IMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFI 202 (300)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333456788889999999999999999999999999
No 129
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=92.00 E-value=0.9 Score=39.79 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCcEEEEEeChh-HHHHHHHHHHHHhc--CCCeEEEEeccc--------cC--CCHHHHHHHHhccCcEEEEeCCcc
Q 021963 238 GSDITLVGWGAQ-LSIMEQACLDAEKE--GISCELIDLKTL--------IP--WDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 238 g~dv~Iia~G~~-~~~aleAa~~L~~~--Gi~~~vI~~~~i--------~P--~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
..||++.|+|.. ..+++.|++.|++. +++++|||+--| .| |+.+.+.++..+.+.|++.=-+|+
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFafHGYp 110 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAFHGYP 110 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEESSEH
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEcCCCH
Confidence 369999999985 79999999999998 999998887654 33 677888888888888887655554
No 130
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=91.91 E-value=6.5 Score=35.27 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=23.9
Q ss_pred EEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 181 VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 181 V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+...+++|+..+++++++.++|++|
T Consensus 170 ~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 170 TASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred EEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45789999999999999999999998
No 131
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=91.47 E-value=2.2 Score=36.99 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCcEEecch-hH-HHHHHHHHHHHhC-CCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CE-QGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE-~~~v~~AaGlA~~-G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- .= -..+..|.|++++ .-++++++ .++ |.+...| +.. ++..+ +|+ .+|+...++...
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i-~GDG~f~m~~~e-L~T-a~~~~------lpv-i~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI-AGDGAWGMSMME-IMT-AVRHK------LPV-TAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHH-HHH-HHHhC------CCe-EEEEEECchhHH
Confidence 788886421 11 2356688887776 34666775 555 5444333 332 33333 465 555444333210
Q ss_pred --------CC----CCC-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 021963 160 --------HG----GHY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (305)
Q Consensus 160 --------~~----g~~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~---~~~Pv~i 206 (305)
.+ +.. +..+-..+.+++ |+.-..-.+++|+..+++++++ .++|++|
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~li 174 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVI 174 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 01 011 112222344555 6677788899999999999998 7899998
No 132
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=91.26 E-value=8.9 Score=33.16 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=23.2
Q ss_pred EeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 182 ~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
....+++|+...++++++.++|++|
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vI 179 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999
No 133
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.24 E-value=8.7 Score=35.88 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=32.0
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 170 ~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
++.....|-+...+|+++.|+...++.|.+.++|.+|
T Consensus 170 Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I 206 (299)
T PRK11865 170 IMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYI 206 (299)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3334567778889999999999999999999999999
No 134
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=90.78 E-value=9.3 Score=32.77 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccc--
Q 021963 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD-- 120 (305)
Q Consensus 43 r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~-- 120 (305)
|+++.++|.+.+. +.+++ .|.+... ..-+.-...|.+|+..|--= ..+..|.|++++--+|++++ -++
T Consensus 1 ~~~~~~~l~~~l~--d~iiv--~d~G~~~----~~~~~~~~~~~~~~~~gsmG-~~lpaAiGa~la~~~~Vv~i-~GDG~ 70 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVV--SNIGVPS----KELYAIRDRPLNFYMLGSMG-LASSIGLGLALATDRTVIVI-DGDGS 70 (181)
T ss_pred CHHHHHHHHHhCC--CCEEE--ecCCHhH----HHHHhhhcCCCCeeeccccc-cHHHHHHHHHHcCCCcEEEE-EcchH
Confidence 4566677777663 34444 3444111 11122112277887654222 23467778777645677775 555
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCC----CCCCCchHHHHHccCCCcEEEe-eCCHHHHHHHHH
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG----GHYHSQSPEAFFCHVPGLKVVI-PRSPRQAKGLLL 195 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~----g~~hs~~d~a~~~~iP~l~V~~-P~d~~e~~~~l~ 195 (305)
|.+-. ..+. .++..+. .|+ .+|+...++..... ...+..+..++.+++ |+.-.. ..+++|+...++
T Consensus 71 f~m~~-~el~-ta~~~~~-----~pv-~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~ 141 (181)
T TIGR03846 71 LLMNL-GVLP-TIAAESP-----KNL-ILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK 141 (181)
T ss_pred HHhhh-hHHH-HHHHhCC-----CCe-EEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH
Confidence 43222 2222 2332220 255 44444333322111 111112223444444 444444 788999999997
Q ss_pred HhHhCCCCEEE
Q 021963 196 SCIRDPNPVVF 206 (305)
Q Consensus 196 ~a~~~~~Pv~i 206 (305)
+++.++|++|
T Consensus 142 -a~~~~~p~li 151 (181)
T TIGR03846 142 -ALAMKGPTFI 151 (181)
T ss_pred -HHcCCCCEEE
Confidence 8888999998
No 135
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.71 E-value=2.9 Score=40.88 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=64.9
Q ss_pred cEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCC
Q 021963 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (305)
Q Consensus 87 r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~ 163 (305)
+++.+ ..|+++.-||-|.|.. |...++..++++-...++.-+.+ + +.. .+ |++++...-+.. +.+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~~~-------~~-Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE-A-SYS-------GV-PLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH-h-ccc-------CC-cEEEEeCCCCHHHhCCCC
Confidence 67666 7999999999999998 65545555778866555444442 2 211 34 666553222211 1223
Q ss_pred CCCchHHHHHccCCCc--EEEeeCCH---HHHHHHHHHhHh-----CCCCEEEeccccc
Q 021963 164 YHSQSPEAFFCHVPGL--KVVIPRSP---RQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (305)
Q Consensus 164 ~hs~~d~a~~~~iP~l--~V~~P~d~---~e~~~~l~~a~~-----~~~Pv~i~~~~~l 212 (305)
.+..+...+++.+-.. .|-.|.+. .++..+++.|++ .++||+|-.|..+
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 3334555777765432 23334431 114444454444 3699999888665
No 136
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.69 E-value=8.9 Score=33.41 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
++.+++ ++.-+.-.+++|+..+++++++.++|++|
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 179 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI 179 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 67777779999999999999999999998
No 137
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=90.61 E-value=11 Score=33.89 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=27.7
Q ss_pred HHHccC--CCcEEEeeCCHHHHHHHHHHhHh-CCCCEEE
Q 021963 171 AFFCHV--PGLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (305)
Q Consensus 171 a~~~~i--P~l~V~~P~d~~e~~~~l~~a~~-~~~Pv~i 206 (305)
.+.+++ +.+....+.+++|++.+++++++ .++|++|
T Consensus 160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI 198 (237)
T cd02018 160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFI 198 (237)
T ss_pred HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEE
Confidence 344444 34333459999999999999998 9999999
No 138
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=90.02 E-value=6.2 Score=34.26 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch-hHHH-HHHHHHHHHhCC-CeEEEEecccc--
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CEQG-IVGFAIGLAAMG-NRAIAEIQFAD-- 120 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI-aE~~-~v~~AaGlA~~G-~~p~~~~~~~~-- 120 (305)
+.+.|.+...+| .+++ .|.+....+ ....+.-.. |.+|++.+- .=.. .+..|.|++++. -++++++ -++
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i-~GDG~ 86 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIA-GAQMLHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVAL-SGDYD 86 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHH-HHHhcCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEE-EeChH
Confidence 444555555433 3333 554421111 123333344 788887642 2122 456788877763 4677776 555
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--------CCC----CCC-----------CchHHHHHccCC
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGG----HYH-----------SQSPEAFFCHVP 177 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--------~~g----~~h-----------s~~d~a~~~~iP 177 (305)
|.+...| +.. +...+ +|+ .+|+...++... .+. ..+ ..+-..+.+++
T Consensus 87 f~m~~~e-L~T-a~~~~------lpv-iivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~- 156 (202)
T cd02006 87 FQFMIEE-LAV-GAQHR------IPY-IHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL- 156 (202)
T ss_pred hhccHHH-HHH-HHHhC------CCe-EEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-
Confidence 4444433 222 33333 566 555443333210 000 000 01112334444
Q ss_pred CcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 021963 178 GLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (305)
Q Consensus 178 ~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i 206 (305)
|+.-+.-.+++|+..+++++++ .++|++|
T Consensus 157 G~~~~~v~~~~el~~al~~a~~~~~~~~~p~li 189 (202)
T cd02006 157 GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVV 189 (202)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEE
Confidence 6777888999999999999995 6899998
No 139
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.91 E-value=4.5 Score=37.41 Aligned_cols=145 Identities=10% Similarity=0.043 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEe-cchhHHHHHHHHHHHHhCC-CeEEEEecc
Q 021963 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFN-TPLCEQGIVGFAIGLAAMG-NRAIAEIQF 118 (305)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~-~gIaE~~~v~~AaGlA~~G-~~p~~~~~~ 118 (305)
+...++.+++.++.-..++.+++ .|.+-.+ ....+.. +..+.- .| ..+.+|.|+++.. -++++++ .
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~---~~~~~~~---~~~~~~~mG----~alp~AiGaklA~pd~~VVai-~ 85 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAA---KMPHYIN---VNGFHTLHG----RAIPAATAVKATNPELTVIAE-G 85 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhh---hHHHHcc---CCCCCcccc----cHHHHHHHHHHHCCCCcEEEE-E
Confidence 45678888888776555565444 5554111 1111211 111211 23 4667788887775 4677775 5
Q ss_pred cch--HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC--CCC-C------C--C-C---C---CchHH-HHHccCC
Q 021963 119 ADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGH-G------G--H-Y---H---SQSPE-AFFCHVP 177 (305)
Q Consensus 119 ~~F--~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~--~~~-~------g--~-~---h---s~~d~-a~~~~iP 177 (305)
++. ..-....+.+ ++..+ +++ .+|+..-.++ .+. . | + + . .--|. .+..+.
T Consensus 86 GDG~~~~iG~~eL~t-A~r~n------l~i-~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~- 156 (280)
T PRK11869 86 GDGDMYAEGGNHLIH-AIRRN------PDI-TVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL- 156 (280)
T ss_pred CchHHhhCcHHHHHH-HHHhC------cCc-EEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC-
Confidence 553 3333555554 44444 466 5554432221 110 0 0 0 0 0 11133 333333
Q ss_pred CcEEEe---eCCHHHHHHHHHHhHhCCCCEEE
Q 021963 178 GLKVVI---PRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 178 ~l~V~~---P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
|...++ +.+++|+..++++|++.++|++|
T Consensus 157 G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 157 DASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 444455 99999999999999999999999
No 140
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=89.59 E-value=5.2 Score=34.21 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=62.8
Q ss_pred CCcEEecch-hH-HHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI-aE-~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|+..+- .= -..+..|.|++++. -++++++ .++ |++...| +.. ++..+ +|+ .+|+..-++..
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~~~~~e-L~t-a~~~~------lpi-~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICI-DGDGSFQMNIQE-LAT-AAQYN------LPV-KIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEE-EcccHHhccHHH-HHH-HHHhC------CCe-EEEEEECCccHH
Confidence 788887532 11 13556788887764 3566665 555 5444333 332 33333 455 44444333321
Q ss_pred ---------CC--CCCCC-CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 ---------GH--GGHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ---------~~--~g~~h-s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.. .+... ..-|. ++.+++ |+.-..-.+++|+...++++++.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 169 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLL 169 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 01111 11233 344555 66667778899999999999999999999
No 141
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=89.41 E-value=17 Score=33.52 Aligned_cols=142 Identities=10% Similarity=0.084 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEE-ecchhHHHHHHHHHHHHhC-CCeEEEEecccc-
Q 021963 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVF-NTPLCEQGIVGFAIGLAAM-GNRAIAEIQFAD- 120 (305)
Q Consensus 44 ~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~-~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~- 120 (305)
..+.++|.++....++.+ +..|++-. ..+..-+.++++. -.| ..+.+|.|++++ --++++++ .++
T Consensus 29 ~~v~~al~e~~~~~~d~i-vvsdiGc~------~~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i-~GDG 96 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVC-VVSGIGCS------GRFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVV-SGDG 96 (277)
T ss_pred HHHHHHHHHhcCCCCCEE-EEeCcCHH------HHhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEE-ECch
Confidence 345577777653345554 34666511 1111112134554 344 677888888886 33566665 555
Q ss_pred -hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCc--CCCC-------CCC-----CC-Cc---hHH-HHHccCCCcE
Q 021963 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG--AVGH-------GGH-----YH-SQ---SPE-AFFCHVPGLK 180 (305)
Q Consensus 121 -F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g--~~~~-------~g~-----~h-s~---~d~-a~~~~iP~l~ 180 (305)
|++-....+. .++..+ +|+ .+|+..-++ ..++ .+. .+ .. .|. .+.++. |..
T Consensus 97 ~f~~~g~~el~-ta~r~n------lpi-~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~~ 167 (277)
T PRK09628 97 DGLAIGGNHTI-HGCRRN------IDL-NFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GAS 167 (277)
T ss_pred HHHHhhHHHHH-HHHHhC------cCe-EEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CCc
Confidence 3321211222 244444 566 555443222 1110 000 00 00 122 333333 444
Q ss_pred E---EeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 181 V---VIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 181 V---~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
- ....+++|+..++++|++.++|++|
T Consensus 168 ~va~~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 168 FVARESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred eEEEEccCCHHHHHHHHHHHHhCCCCEEE
Confidence 3 5789999999999999999999999
No 142
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.66 E-value=15 Score=34.09 Aligned_cols=143 Identities=12% Similarity=0.055 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecc-h--hHHHHHHHHHHHHhCC-CeEEEEec
Q 021963 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-L--CEQGIVGFAIGLAAMG-NRAIAEIQ 117 (305)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~g-I--aE~~~v~~AaGlA~~G-~~p~~~~~ 117 (305)
.-.++.++|.++....++.+++ .|++-.+. + + +|++.+ . .=-..+.+|.|++++. -++++++
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~----------~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i- 93 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGR----------L-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV- 93 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCccccc----------c-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE-
Confidence 5677777887776655665544 56652110 1 1 233321 1 1124566778877763 3566665
Q ss_pred ccch--HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC--CCC--CCC---------C-CC-----chHHHHHccC
Q 021963 118 FADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGH--GGH---------Y-HS-----QSPEAFFCHV 176 (305)
Q Consensus 118 ~~~F--~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~--~~~--~g~---------~-hs-----~~d~a~~~~i 176 (305)
.++. ++-....+.+ ++..+ +|+ .+|+..-.+. .++ .++ + +. ....++....
T Consensus 94 ~GDG~~f~mg~~eL~t-A~r~n------l~i-~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~ 165 (286)
T PRK11867 94 TGDGDALAIGGNHFIH-ALRRN------IDI-TYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGA 165 (286)
T ss_pred eCccHHHhCCHHHHHH-HHHhC------CCc-EEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHC
Confidence 4543 3444444554 33434 466 4554432221 110 000 0 00 1223444444
Q ss_pred C--CcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 177 P--GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 177 P--~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
. .+......+++|+..+++.|++.++|++|
T Consensus 166 Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 166 GATFVARGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 2 22333578999999999999999999999
No 143
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=88.66 E-value=11 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+.+.+ |+..+.-.+++|+...++++.+.++|++|
T Consensus 140 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi 174 (178)
T cd02002 140 AIAKAF-GVEAERVETPEELDEALREALAEGGPALI 174 (178)
T ss_pred HHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 55666778899999999999998999988
No 144
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=88.22 E-value=5.9 Score=40.07 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++. -++++++ .++ |++...| +.. +...+ +|+ .+|+...++...
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDGsf~~~~~e-L~t-a~~~~------lpv-i~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF-SGDGSLMMNIQE-MAT-AAENQ------LDV-KIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HHH-HHHhC------CCe-EEEEEeCCcccc
Confidence 678887642 2224667888888764 3455554 444 5555444 332 33333 455 444443332210
Q ss_pred --------CC----CC-C-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HG----GH-Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~----g~-~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+ +. + +..+..++.+++ |+.-+...+.+|+...++++++.++|++|
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALI 538 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 11 1 112233455666 78888999999999999999999999998
No 145
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=87.30 E-value=11 Score=38.06 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=63.7
Q ss_pred CCcEEecc-hhHH-HHHHHHHHHHhCC--CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC
Q 021963 85 KSRVFNTP-LCEQ-GIVGFAIGLAAMG--NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (305)
Q Consensus 85 p~r~~~~g-IaE~-~~v~~AaGlA~~G--~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~ 158 (305)
|.+|+..+ ..=. ..+..|.|++++. -+|++++ -++ |++...| +. .+...+ +|+ .+|+...++..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i-~GDGsf~~~~~e-L~-Ta~~~~------lpi-~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISF-VGDGGFTMTMME-LI-TAKKYD------LPV-KIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEE-EcccHHhhhHHH-HH-HHHHHC------CCe-EEEEEECCccc
Confidence 56777632 1111 1455677877764 4777776 555 5444433 32 234333 466 55555433321
Q ss_pred C-------CCCCC--C---CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 G-------HGGHY--H---SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ~-------~~g~~--h---s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
- .+... . ..+-.++..++ |+.-....+++|+...++++++.++|++|
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 514 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVL 514 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01111 1 11223444555 77778889999999999999999999998
No 146
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.45 E-value=20 Score=30.82 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=58.8
Q ss_pred CCcEEecchhHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCC
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~ 161 (305)
|.+|+..|-.= ..++.|.|++++. -++++++ -++ |++- ...+. .++..+. .++ .+|+...++.....
T Consensus 41 ~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i-~GDG~f~m~-~~eL~-ta~~~~l-----~~i-~ivV~NN~~yg~~~ 110 (188)
T cd03371 41 AQDFLTVGSMG-HASQIALGIALARPDRKVVCI-DGDGAALMH-MGGLA-TIGGLAP-----ANL-IHIVLNNGAHDSVG 110 (188)
T ss_pred cCceeecCccc-cHHHHHHHHHHhCCCCcEEEE-eCCcHHHhh-ccHHH-HHHHcCC-----CCc-EEEEEeCchhhccC
Confidence 58888754221 2457788887653 4566665 555 4322 22222 2232220 134 44444333321111
Q ss_pred C-CCC--CchHHHHHccCCCcE-EEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 162 G-HYH--SQSPEAFFCHVPGLK-VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 162 g-~~h--s~~d~a~~~~iP~l~-V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+ ... ..+-..+.+.+ |+. +....+++|+..+++++++.++|++|
T Consensus 111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lI 158 (188)
T cd03371 111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFI 158 (188)
T ss_pred CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 111 12223444544 444 34567999999999999998999998
No 147
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=86.41 E-value=2.1 Score=33.92 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=39.1
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
++|.+. .....|.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~g 50 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDLP 50 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHcC
Confidence 444444 345678899999999999999999997 8999999988887543
No 148
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.22 E-value=10 Score=38.38 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..++.|.|++++- -++++++ .++ |++-..| +. .+...+ +|+ .+|+...++...
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~i-~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDI-AGDGSFQMNSQE-LA-TAVQND------IPV-IVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEE-EeCchhhccHHH-HH-HHHHcC------CCe-EEEEEECCccHH
Confidence 678887532 2234667788888863 3566665 555 5544433 22 233333 455 444443333210
Q ss_pred --------CCCCC------CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGHY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~~------hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+... +..+..++.+.+ |..-+.-.+.+|+...+++++..++|++|
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~li 533 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVI 533 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01110 112223455555 67788899999999999999999999999
No 149
>PRK08617 acetolactate synthase; Reviewed
Probab=85.99 E-value=9.3 Score=38.50 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHH----HHHHHHhCC-CeEEEEecccc
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFAD 120 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~----~AaGlA~~G-~~p~~~~~~~~ 120 (305)
+.+.|.+.+..| .+++ .|.+....+ ....+ ..+.|.+|+..+ -...+| .|.|++++. -++++++ -++
T Consensus 370 ~~~~l~~~l~~~-~ii~--~d~G~~~~~-~~~~~-~~~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i-~GD 441 (552)
T PRK08617 370 IIRALQDIVTDD-TTVT--VDVGSHYIW-MARYF-RSYEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSV-SGD 441 (552)
T ss_pred HHHHHHHhcCCC-cEEE--eCCcHHHHH-HHHhc-cccCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEE-Eec
Confidence 456666666543 3333 343311111 11222 223377776542 123455 788887763 3566665 555
Q ss_pred --hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--------CC---CCC-CCchHHHHHccCCCcEEEeeCC
Q 021963 121 --YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG---GHY-HSQSPEAFFCHVPGLKVVIPRS 186 (305)
Q Consensus 121 --F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--------~~---g~~-hs~~d~a~~~~iP~l~V~~P~d 186 (305)
|++...| +. .+...+ +|+ .+|+...++... .+ +.. +..+..++.+.+ |+.-....+
T Consensus 442 Gsf~m~~~e-L~-Ta~~~~------lpv-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 511 (552)
T PRK08617 442 GGFLFSAME-LE-TAVRLK------LNI-VHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTS 511 (552)
T ss_pred hHHhhhHHH-HH-HHHHhC------CCe-EEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECC
Confidence 5544433 32 244434 455 444443333211 00 111 112223444555 778889999
Q ss_pred HHHHHHHHHHhHhCCCCEEE
Q 021963 187 PRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 187 ~~e~~~~l~~a~~~~~Pv~i 206 (305)
++|+...++++++.++|++|
T Consensus 512 ~~eL~~al~~a~~~~~p~li 531 (552)
T PRK08617 512 PDELEPVLREALATDGPVVI 531 (552)
T ss_pred HHHHHHHHHHHHhCCCcEEE
Confidence 99999999999998999998
No 150
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=85.89 E-value=8.3 Score=31.80 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
++.+.. |+......+++|+..+++++.+.++|++|
T Consensus 130 ~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i 164 (168)
T cd00568 130 ALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 455554 67777788899999999999999999988
No 151
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.31 E-value=22 Score=30.25 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCcEEecchhHHHHHHHHHHHHhCCCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCC-
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG- 161 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~- 161 (305)
|.+|+..|.-= ..+..|.|++++-.++++++ .++ |.+-. ..+.. ++..+. .++ .+++...++....+
T Consensus 35 ~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i-~GDG~f~m~~-~el~t-a~~~~~-----~~l-~vvV~NN~~~~~~~~ 104 (179)
T cd03372 35 PLNFYMLGSMG-LASSIGLGLALAQPRKVIVI-DGDGSLLMNL-GALAT-IAAEKP-----KNL-IIVVLDNGAYGSTGN 104 (179)
T ss_pred ccccccccchh-hHHHHHHHHHhcCCCcEEEE-ECCcHHHhCH-HHHHH-HHHcCC-----CCE-EEEEEcCccccccCC
Confidence 56776543221 33457788877644777776 666 33222 22222 222220 134 34434333322111
Q ss_pred ---CCCCCchHHHHHccCCCcEEEeeC-CHHHHHHHHHHhHhCCCCEEE
Q 021963 162 ---GHYHSQSPEAFFCHVPGLKVVIPR-SPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 162 ---g~~hs~~d~a~~~~iP~l~V~~P~-d~~e~~~~l~~a~~~~~Pv~i 206 (305)
...+..+-..+.+++ |+.-.... +++|+...++++. ++|.+|
T Consensus 105 ~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lI 150 (179)
T cd03372 105 QPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFI 150 (179)
T ss_pred CCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEE
Confidence 111122223344444 55555566 9999999999998 799998
No 152
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=84.81 E-value=45 Score=33.32 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=75.5
Q ss_pred hhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 81 ~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
++.| -||+.+ =.||+++=.|-.++.- |..-++-+..++.+.-++--+.|.- ++. . |++.++.+...
T Consensus 48 qalG-Ik~I~~-RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA~-~n~------w---Pll~IgGsa~~~ 115 (571)
T KOG1185|consen 48 QALG-IKFIGT-RNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANAQ-MNC------W---PLLLIGGSASTL 115 (571)
T ss_pred HHcC-CeEeec-ccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhhh-hcc------C---cEEEEecccchh
Confidence 4664 799999 5999998887777764 5443444457777766655555422 122 2 55555322221
Q ss_pred -CCCCCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccc
Q 021963 159 -GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKW 211 (305)
Q Consensus 159 -~~~g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 211 (305)
-+-|..+..+.+.++|.+=.. +..|.+..+.-..+++|++ .++|+|+=.|-.
T Consensus 116 ~~~rGafQe~dQvel~rp~~K~-~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 116 LENRGAFQELDQVELFRPLCKF-VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hhcccccccccHHhhhhhhhhh-ccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 123555555667777766443 6788888888888888887 389999966655
No 153
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=84.13 E-value=2.9 Score=35.17 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=43.9
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe 298 (305)
++|++-|.......++++.|++.|+.+=.|-+. ..|.+.|..++.+-.+++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 467777877777888999999999876665554 5799999998888889998874
No 154
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=84.07 E-value=15 Score=30.04 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCcEEec--chhHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNT--PLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~--gIaE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|+.. .-+=-..++.|.|++++. -++++++ -++ |.+- ...+.. +...+ +|+ .+|+..-++..
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i-~GDG~f~~~-~~el~t-a~~~~------~~v-~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAI-TGDGSFLMS-LQELAT-AVRYG------LPV-VIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEE-EEHHHHHHH-GGGHHH-HHHTT------SSE-EEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEe-cCCcceeec-cchhHH-Hhhcc------ceE-EEEEEeCCcceE
Confidence 7788872 223336678888888873 4566665 555 4433 222332 33333 455 45544333221
Q ss_pred ------CCCC-C--------CCCchHHHHHccCCCcEEEeeCCH--HHHHHHHHHhHhCCCCEEE
Q 021963 159 ------GHGG-H--------YHSQSPEAFFCHVPGLKVVIPRSP--RQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ------~~~g-~--------~hs~~d~a~~~~iP~l~V~~P~d~--~e~~~~l~~a~~~~~Pv~i 206 (305)
..+. . .|..+-..+.+++ ++..+.-.++ +|+...++++++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0111 1 2223344555555 6666664445 9999999999999999998
No 155
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=84.03 E-value=14 Score=31.35 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--CCC----C-----C
Q 021963 98 IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHG----G-----H 163 (305)
Q Consensus 98 ~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~~~----g-----~ 163 (305)
.++.|.|++++. -++++++ -++ |++-.+..+.. +...+ +|+ .+|+....+.. +.. . .
T Consensus 56 gl~~AiGa~la~p~~~Vv~i-~GDG~f~~~g~~eL~t-a~~~~------l~i-~vvV~nN~~~g~~~~~~~~~~~~~~~~ 126 (178)
T cd02008 56 SIGVAIGMAKASEDKKVVAV-IGDSTFFHSGILGLIN-AVYNK------ANI-TVVILDNRTTAMTGGQPHPGTGKTLTE 126 (178)
T ss_pred HHHHHhhHHhhCCCCCEEEE-ecChHHhhccHHHHHH-HHHcC------CCE-EEEEECCcceeccCCCCCCCCcccccC
Confidence 345667776663 4566665 555 43333344443 33333 455 55555433321 100 0 0
Q ss_pred CCCchHH-HHHccC--CCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 164 YHSQSPE-AFFCHV--PGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 164 ~hs~~d~-a~~~~i--P~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+...|. .+.+++ +...|-.|.+-+++...++++++.++|.+|
T Consensus 127 ~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI 172 (178)
T cd02008 127 PTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178)
T ss_pred CCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEE
Confidence 0111122 333433 444455555555555888999988999988
No 156
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=83.24 E-value=6.3 Score=39.34 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=90.6
Q ss_pred HHHHHHHHHh-cC-CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchH
Q 021963 46 INQALHIALE-TD-PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI 122 (305)
Q Consensus 46 ~~~~L~~l~~-~~-~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~ 122 (305)
+++.|.+.+. -+ +.++.+-+|-..+ .++.+. .++-=|++.+ -.|-|+.=+|=|.|.. |.-.++. ||+..-
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGDyNL~----lLD~i~-~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvT-TfGVGE 78 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGDYNLS----LLDKIY-SVPGLRWVGN-ANELNAAYAADGYARLNGISALVT-TFGVGE 78 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCcccHH----HHHHhh-cCCCceeecc-cchhhhhhhhcchhhhcCceEEEE-ecccch
Confidence 4555554433 33 6688887885422 234443 3312467666 4899999999999986 8778887 699866
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEc-CCcCCC--CCCCCCCc--hHHHHHccC-CCc----EEEeeCC--HHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG--HGGHYHSQ--SPEAFFCHV-PGL----KVVIPRS--PRQA 190 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~-~~g~~~--~~g~~hs~--~d~a~~~~i-P~l----~V~~P~d--~~e~ 190 (305)
.-|++-|. -+|... +|| -. +++ |.-... +---||.. .|...+..| .++ ..+.|.+ +.|.
T Consensus 79 LSA~NGIA--GSYAE~-----vpV-vh-IvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eI 149 (557)
T COG3961 79 LSALNGIA--GSYAEH-----VPV-VH-IVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREI 149 (557)
T ss_pred hhhhcccc--hhhhhc-----CCE-EE-EEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHH
Confidence 67777665 333321 343 22 232 211111 12237743 444333222 121 2344444 7889
Q ss_pred HHHHHHhHhCCCCEEEecccccccc
Q 021963 191 KGLLLSCIRDPNPVVFFEPKWLYRL 215 (305)
Q Consensus 191 ~~~l~~a~~~~~Pv~i~~~~~l~~~ 215 (305)
..+++.++..++|+||..|-...+.
T Consensus 150 Drvi~~~~~~~RPvYI~lP~dva~~ 174 (557)
T COG3961 150 DRVIRTALKQRRPVYIGLPADVADL 174 (557)
T ss_pred HHHHHHHHHhcCCeEEEcchHHhcC
Confidence 9999999999999999877665544
No 157
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=82.81 E-value=15 Score=42.35 Aligned_cols=151 Identities=9% Similarity=-0.009 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhc-C-CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCCCeE-EEEecccc
Q 021963 44 SAINQALHIALET-D-PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFAD 120 (305)
Q Consensus 44 ~a~~~~L~~l~~~-~-~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~ 120 (305)
..+++.|.+.+++ + +.++.+-++-. ....+.+. +.+.=|++.+ ..|+++.-||.|.|..--+| ++.+|.++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~----~pL~dAl~-~~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGP 374 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRS----SPLAIAAS-NHPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGT 374 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCC----HHHHHHHH-hCCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4455666655543 3 34444433311 11223442 2211366655 89999999999999984444 44446777
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--CCCCCCCchHHHHHccCCCcEEE--eeCCH-------HH
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVV--IPRSP-------RQ 189 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--~~g~~hs~~d~a~~~~iP~l~V~--~P~d~-------~e 189 (305)
.+..++--+.+ +... .+ ||+++....+.. +-+..+.++..++++.+-....- .|.+. ..
T Consensus 375 G~tN~l~av~e-A~~d--------~v-PlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~ 444 (1655)
T PLN02980 375 AVSNLLPAVVE-ASQD--------FV-PLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTT 444 (1655)
T ss_pred HHHHHHHHHHH-Hhhc--------CC-CEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHH
Confidence 66555554442 2211 34 666654332221 23344446667788877544333 34441 23
Q ss_pred HHHHHHHhHhC-CCCEEEeccc
Q 021963 190 AKGLLLSCIRD-PNPVVFFEPK 210 (305)
Q Consensus 190 ~~~~l~~a~~~-~~Pv~i~~~~ 210 (305)
+..+++.|... +|||+|-.|.
T Consensus 445 v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 445 LDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred HHHHHHHHhCCCCCCEEEECcc
Confidence 34444444443 6999997774
No 158
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=82.74 E-value=20 Score=36.18 Aligned_cols=147 Identities=13% Similarity=0.185 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch--hHHHHHHHHHHHHhCCCeEEEEecccc--h
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFAD--Y 121 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI--aE~~~v~~AaGlA~~G~~p~~~~~~~~--F 121 (305)
+.+.|.+.+.++++.+++. |.+....+ ...+..-..|.+|++.+. +=-..+..|.|++++--++++.+ -++ |
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~~~~~--~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i-~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGANTLDL--ARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVAL-EGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCchHHHH--HHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEE-EcCchh
Confidence 4466776665545655444 32211001 112222222778887542 11134567777777644677776 555 5
Q ss_pred HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCC-----CCCC-------CCchHHHHHccCCCcEEEeeCCHHH
Q 021963 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-----GGHY-------HSQSPEAFFCHVPGLKVVIPRSPRQ 189 (305)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~-----~g~~-------hs~~d~a~~~~iP~l~V~~P~d~~e 189 (305)
.+-+.| +. -++..+ +|+ .+|+...++.... .+.. +..+..++.+++ |..-+.-.+++|
T Consensus 447 ~m~~~E-L~-Ta~r~~------l~v-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~e 516 (554)
T TIGR03254 447 GFSGME-VE-TICRYN------LPV-CVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPDE 516 (554)
T ss_pred cccHHH-HH-HHHHcC------CCE-EEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHHH
Confidence 444444 33 244433 455 4444443332100 0100 111223444555 566677799999
Q ss_pred HHHHHHHhHhCCCCEEE
Q 021963 190 AKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 190 ~~~~l~~a~~~~~Pv~i 206 (305)
+...++++++.++|++|
T Consensus 517 l~~al~~a~~~~~p~lI 533 (554)
T TIGR03254 517 LKAALNEALASGKPTLI 533 (554)
T ss_pred HHHHHHHHHhCCCCEEE
Confidence 99999999999999998
No 159
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=82.67 E-value=18 Score=36.42 Aligned_cols=111 Identities=7% Similarity=0.018 Sum_probs=64.9
Q ss_pred CCcEEecchh--HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gIa--E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+-. =-..+..|+|++++. -++++++ -++ |++...| +. .+...+ +|+ .+|+...++...
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~~~~~e-L~-ta~~~~------l~v-~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICV-SGDGSFMMNVQE-LG-TIKRKQ------LPV-KIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 7888865321 112367778887773 4677775 555 5544433 22 233333 466 555544333210
Q ss_pred --------CC----CCC--CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HG----GHY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~----g~~--hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+ +.. +..+...+.+++ |..-....+++|+...++++++.++|.+|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 520 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLL 520 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01 111 112223455555 77788889999999999999999999998
No 160
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=82.21 E-value=12 Score=37.89 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch-h-HHHHHHHHHHHHhCC-CeEEEEecccc-
Q 021963 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (305)
Q Consensus 45 a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI-a-E~~~v~~AaGlA~~G-~~p~~~~~~~~- 120 (305)
.+.+.|.+.+.+| .+++ .|.+....+ ....+.-.. |.+|++.+- . --..++.|.|++++. -++++++ .++
T Consensus 367 ~~~~~l~~~l~~~-~iv~--~d~g~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~-~GDG 440 (558)
T TIGR00118 367 QVIEELSRVTKDE-AIVT--TDVGQHQMW-AAQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICI-TGDG 440 (558)
T ss_pred HHHHHHHhhCCCC-eEEE--eCCcHHHHH-HHHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEE-Ecch
Confidence 3556666665543 3333 443311111 122233344 788887642 2 223567888877773 3555554 444
Q ss_pred -hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC---------CC---CCC-CCchHH-HHHccCCCcEEEeeC
Q 021963 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------HG---GHY-HSQSPE-AFFCHVPGLKVVIPR 185 (305)
Q Consensus 121 -F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~---------~~---g~~-hs~~d~-a~~~~iP~l~V~~P~ 185 (305)
|++...| +. .++..+ +|+ .+|+...++... .+ ..+ +..-|. .+...+ |+.-+.-.
T Consensus 441 ~f~~~~~e-L~-ta~~~~------l~~-~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~ 510 (558)
T TIGR00118 441 SFQMNLQE-LS-TAVQYD------IPV-KILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIE 510 (558)
T ss_pred HHhccHHH-HH-HHHHhC------CCe-EEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEEC
Confidence 5544333 22 244444 455 444443333210 00 111 112233 444555 67778888
Q ss_pred CHHHHHHHHHHhHhCCCCEEE
Q 021963 186 SPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 186 d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+++|++.++.++++.++|++|
T Consensus 511 ~~~~l~~al~~a~~~~~p~li 531 (558)
T TIGR00118 511 KPEELDEKLKEALSSNEPVLL 531 (558)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999998
No 161
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.97 E-value=20 Score=36.31 Aligned_cols=145 Identities=14% Similarity=0.034 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~-- 120 (305)
+...|.+.. +++.+ +..|.+....|. ...+.-.. |.+|++.|- .=. ..++.|.|++++. -++++++ .++
T Consensus 377 ~~~~l~~~l--~~~~i-i~~d~g~~~~~~-~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~ 450 (574)
T PRK06882 377 VVEAIYRLT--NGDAY-VASDVGQHQMFA-ALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCV-TGDGS 450 (574)
T ss_pred HHHHHHhhc--CCCeE-EEecCchhHHHH-HHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEE-Ecchh
Confidence 555555544 23433 345544211221 22333344 788887542 322 3577888888774 3455554 455
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--------CCCCC---CC--CchHH-HHHccCCCcEEEeeCC
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGGH---YH--SQSPE-AFFCHVPGLKVVIPRS 186 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--------~~~g~---~h--s~~d~-a~~~~iP~l~V~~P~d 186 (305)
|.+-. ..+.. ++..+ +|+ .+|+...++.. ..++. .. ..-|. .+.+++ |+.-+.-.+
T Consensus 451 f~~~~-~eL~t-a~~~~------lpv-~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~ 520 (574)
T PRK06882 451 IQMNI-QELST-AKQYD------IPV-VIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDT 520 (574)
T ss_pred hhccH-HHHHH-HHHhC------CCe-EEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCC
Confidence 54433 33332 34433 465 55544433321 01111 00 11233 344444 667778899
Q ss_pred HHHHHHHHHHhHhC-CCCEEE
Q 021963 187 PRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 187 ~~e~~~~l~~a~~~-~~Pv~i 206 (305)
.+|+..++.++++. ++|++|
T Consensus 521 ~~eL~~al~~a~~~~~~p~li 541 (574)
T PRK06882 521 PDELEEKLTQAFSIKDKLVFV 541 (574)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 99999999999986 789988
No 162
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.80 E-value=22 Score=36.06 Aligned_cols=111 Identities=10% Similarity=-0.029 Sum_probs=63.2
Q ss_pred CCcEEecch-hH-HHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE-~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|++.|- .= -..+..|+|++++- -+|++++ .++ |++...| +. -+...+ +|+ .+|+...++...
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~e-L~-Ta~r~~------lpv-~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACV-TGEGSIQMNIQE-LS-TCLQYG------LPV-KIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEE-EcchhhhccHHH-HH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 778886531 11 12356688887763 4566665 555 5444433 22 233333 465 555444333210
Q ss_pred --------CCC----CC--CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 021963 160 --------HGG----HY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 160 --------~~g----~~--hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 206 (305)
.++ .. +..+..++.+++ |+.-+.-.+.+|+...++++++. ++|++|
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lI 543 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFI 543 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 011 11 112222444555 67778889999999999999986 899998
No 163
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=81.60 E-value=5.5 Score=31.85 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=39.2
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
++|..+-+ ...|.+|.+.|++.||+..++|... .|++.+.|.+.++..+
T Consensus 3 itiy~~p~-C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPN-CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCC-ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 34444433 3578999999999999999999987 7999999988887664
No 164
>PRK06163 hypothetical protein; Provisional
Probab=81.49 E-value=36 Score=29.76 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhCC-CeEEEEecccc-
Q 021963 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (305)
Q Consensus 43 r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~G-~~p~~~~~~~~- 120 (305)
|+.+-+.|.+.+..+ ++++ .|.+... ...+...+.|.+|+.+| +=-..+.+|.|++++. -++++++ -++
T Consensus 15 ~~~~i~~l~~~l~~~-~~iv--~D~G~~~----~~~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i-~GDG 85 (202)
T PRK06163 15 RFDLTCRLVAKLKDE-EAVI--GGIGNTN----FDLWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIAL-EGDG 85 (202)
T ss_pred HHHHHHHHHHhcCCC-CEEE--ECCCccH----HHHHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEE-Ecch
Confidence 444556666666543 3443 4654210 01111112267787544 2223445777877763 4666775 555
Q ss_pred -hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCC----CCCCchHHHHHccCCCcE-EEeeCCHHHHHHHH
Q 021963 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG----HYHSQSPEAFFCHVPGLK-VVIPRSPRQAKGLL 194 (305)
Q Consensus 121 -F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g----~~hs~~d~a~~~~iP~l~-V~~P~d~~e~~~~l 194 (305)
|.+-.-| +...+.+.+ +|+ .+|+...++.....+ ..+..+...+.+++ |+. -+.-.+.+|+..++
T Consensus 86 ~f~m~~~e-L~Ta~~~~~------lpi-~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al 156 (202)
T PRK06163 86 SLLMQLGA-LGTIAALAP------KNL-TIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALV 156 (202)
T ss_pred HHHHHHHH-HHHHHHhcC------CCe-EEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHH
Confidence 4433333 222122212 355 444443333221111 11112223455555 554 55678999999999
Q ss_pred HHhHhCCCCEEE
Q 021963 195 LSCIRDPNPVVF 206 (305)
Q Consensus 195 ~~a~~~~~Pv~i 206 (305)
+++++.++|++|
T Consensus 157 ~~a~~~~~p~lI 168 (202)
T PRK06163 157 DQALSGPGPSFI 168 (202)
T ss_pred HHHHhCCCCEEE
Confidence 999999999998
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=81.02 E-value=2.8 Score=32.74 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
...|.+|.+.|++.|+++..+|+.. .|++.+.|.+.++..+
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 4678899999999999999999986 7999999988877554
No 166
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.01 E-value=4 Score=31.83 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
....|.+|.+.|++.|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 8 ~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 8 NCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 35678899999999999999999987 7999999988887654
No 167
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=80.90 E-value=27 Score=35.68 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCcEEecch-h-HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-a-E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- . =-..+..|.|++++. -|+++++ -++ |.+.+.| |. -++..+ +|+ .+|+...++...
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpv-i~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDI-AGDASIQMCIQE-MS-TAVQYN------LPV-KIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEE-EcCchhhccHHH-HH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 788886531 1 113456777777764 4677775 555 5544433 22 234433 465 455444333310
Q ss_pred --------CCC----CCC-CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGG----HYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g----~~h-s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++ .+. ..-|. .+.+.+ |+.-+.-.+++|+...+++++..++|++|
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 549 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIF 549 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 111 111 11233 455555 77778889999999999999999999999
No 168
>PRK08266 hypothetical protein; Provisional
Probab=80.87 E-value=58 Score=32.67 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCcEEecchh--HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gIa--E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+.. =-..+..|.|++++. -++++++ .++ |.+.. ..+.. +...+ +|+ .+|+...++...
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v-~GDG~f~~~~-~eL~t-a~~~~------lpv-~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSI-TGDGGFMFGV-QELAT-AVQHN------IGV-VTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchhhhccH-HHHHH-HHHhC------CCe-EEEEEeCCcchH
Confidence 6788876421 112346788888774 3555554 455 44433 33332 33333 566 555454433210
Q ss_pred --------CCCC-----CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~-----~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++. .+..+-..+.+++ |+..+.-.+.+|+...++++++.++|++|
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 520 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLI 520 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 1111 1122223445555 77788889999999999999998999988
No 169
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=80.82 E-value=34 Score=34.82 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|++.+- +=-..++.|.|++++. -++++++ -++ |++..-| +. .+...+ +|+ .+|+...++..
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i-~GDGsf~m~~~e-L~-Ta~~~~------lpv-~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAI-TGDGGFLMNSQE-LA-TIAEYD------IPV-VICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEE-EcchHhhccHHH-HH-HHHHhC------CCe-EEEEEeCCchHH
Confidence 788887542 2233667888888763 3555664 444 5433322 22 233333 465 55544433321
Q ss_pred ---------C--CCCCCC-C-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 ---------G--HGGHYH-S-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ---------~--~~g~~h-s-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+ ..+.++ . .+..++..++ |..-+.-.+++|+...++++++.++|.+|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLL 538 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 011111 1 2233455555 67778889999999999999998999998
No 170
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=80.78 E-value=19 Score=36.83 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=62.5
Q ss_pred CCcEEecchhHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--C
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G 159 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~ 159 (305)
|.++++...+=-..++.|.|+++.. -++++++ -++ |++-....+.. +...+ +++ .+|+...++.. +
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i-~GDG~f~~~g~~eL~t-av~~~------~~i-~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAF-IGDSTFFHTGIPGLIN-AVYNK------ANI-TVVILDNRITAMTG 465 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEE-eccchhhhcCHHHHHH-HHHcC------CCe-EEEEEcCcceeccC
Confidence 4555554322223445677777653 4677775 555 44333344553 33333 455 44544333221 1
Q ss_pred CCCC--C---------CCchHHHHHc--cCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 160 HGGH--Y---------HSQSPEAFFC--HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 160 ~~g~--~---------hs~~d~a~~~--~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
+... . +..+-.++.+ .++...|..|.+.+|+..+++++++.++|.+|.
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~ 526 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVII 526 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 1100 0 1111223333 356778888888899999999999999999984
No 171
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=80.74 E-value=8.2 Score=28.25 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=38.5
Q ss_pred cEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 240 dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++.|++.+. ....|++.++.|+++|+++.+ |.+. +.+..+.-...-.+.+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 566777765 567899999999999999977 4444 455544322223345677777644
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=80.04 E-value=58 Score=31.24 Aligned_cols=112 Identities=12% Similarity=0.007 Sum_probs=62.1
Q ss_pred CCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC--CC
Q 021963 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VG 159 (305)
Q Consensus 85 p~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~--~~ 159 (305)
|.+|+.+|- =-+.+.+|.|+|++ --++++++ -++ |++..-+ +. .++..+. .++ .+|+..-++. .+
T Consensus 214 ~~~f~~~Gs-MG~a~p~AlG~ala~p~r~Vv~i-~GDGsflm~~~e-L~-t~~~~~~-----~nl-i~VVlNNg~~~~~g 283 (361)
T TIGR03297 214 ARDFLTVGS-MGHASQIALGLALARPDQRVVCL-DGDGAALMHMGG-LA-TIGTQGP-----ANL-IHVLFNNGAHDSVG 283 (361)
T ss_pred CCceEeech-hhhHHHHHHHHHHHCCCCCEEEE-EChHHHHHHHHH-HH-HHHHhCC-----CCe-EEEEEcCccccccC
Confidence 577877542 22345788888876 33667775 555 4433322 22 2222220 134 4444433332 12
Q ss_pred CCCCCCCchH-HHHHccCCCc-EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 160 HGGHYHSQSP-EAFFCHVPGL-KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 160 ~~g~~hs~~d-~a~~~~iP~l-~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
...+....-| ..+.++. |. ..+...+.+|+..+++++.+.++|++|-
T Consensus 284 ~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 1111112223 3455555 43 4678899999999999999989999983
No 173
>PRK05858 hypothetical protein; Provisional
Probab=80.00 E-value=18 Score=36.43 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=62.6
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhC-CCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~-G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+. +=-..++.|.|++++ .-|+++++ .++ |++-..| +.. +...+ +|+ .+|+...++..-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i-~GDG~f~~~~~e-L~T-a~~~~------lpi-~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLL-QGDGAFGFSLMD-VDT-LVRHN------LPV-VSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEE-EcCchhcCcHHH-HHH-HHHcC------CCE-EEEEEeCCchhh
Confidence 788887653 212244566666655 23666665 555 4444333 322 33333 465 444443333210
Q ss_pred -C------CCC-----C-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 -H------GGH-----Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 -~------~g~-----~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
. .+. . +..+...+.+.+ |..-..-.+++|+..+++++++.++|++|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLV 525 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 0 010 0 112223344555 67888999999999999999999999999
No 174
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=79.88 E-value=15 Score=34.28 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch---hHHHHHHHHHHHHhC-CCeEEEE
Q 021963 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL---CEQGIVGFAIGLAAM-GNRAIAE 115 (305)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI---aE~~~v~~AaGlA~~-G~~p~~~ 115 (305)
.....++.++|.++.-..++++ +..|++-.+ + . |. |+++.- .=-..+.+|.|++++ .-+++++
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~v-ivsdiG~s~-~--~--------~~-yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~ 93 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKVV-VVSGIGCSS-K--I--------PG-YFLSHGLHTLHGRAIAFATGAKLANPDLEVIV 93 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCEE-EEeCCcHhh-h--h--------hh-hcccCccchhhccHHHHHHHHHHHCCCCcEEE
Confidence 3345667777777743334544 444665211 0 1 11 222110 001356678887776 3466666
Q ss_pred ecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC--CCCC--CCC---------------CCchHHHHHc
Q 021963 116 IQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGHG--GHY---------------HSQSPEAFFC 174 (305)
Q Consensus 116 ~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~--~~~~--g~~---------------hs~~d~a~~~ 174 (305)
+ -++ |..-....+.+ ++..+ +++ .+|+..-.+. .++. .++ ...+...+..
T Consensus 94 i-~GDG~~~~mg~~eL~t-A~r~n------l~i-~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~ 164 (301)
T PRK05778 94 V-GGDGDLASIGGGHFIH-AGRRN------IDI-TVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALAL 164 (301)
T ss_pred E-eCccHHHhccHHHHHH-HHHHC------CCc-EEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHH
Confidence 5 555 33344445554 44444 465 4444432221 1110 000 0112223444
Q ss_pred cCCCcEEE---eeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 175 HVPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 175 ~iP~l~V~---~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+. |..-+ ...+++|+..++++|++.++|++|
T Consensus 165 a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalI 198 (301)
T PRK05778 165 AA-GATFVARSFAGDVKQLVELIKKAISHKGFAFI 198 (301)
T ss_pred HC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEE
Confidence 44 45443 689999999999999999999998
No 175
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=79.58 E-value=22 Score=36.05 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=64.1
Q ss_pred CCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- .=. ..++.|.|++++. -++++.+ .++ |++...| +- .+...+ +|+ .+|+...++...
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i-~GDGsf~m~~~e-L~-ta~r~~------lpi-~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAI-VGDGGFQMTLQE-LS-VIKELS------LPV-KVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-HH-HHHHhC------CCe-EEEEEECchHHH
Confidence 678886532 111 2667778887763 3455554 555 5544444 32 233333 455 555444333210
Q ss_pred --------CCCCC-C----CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGHY-H----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~~-h----s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+..+ + ..-|. .+.+.+ |+.-+...+.+|+..+++++++.++|++|
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 543 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVI 543 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01110 0 11233 344555 78888889999999999999999999999
No 176
>PRK08322 acetolactate synthase; Reviewed
Probab=79.50 E-value=28 Score=35.00 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=62.1
Q ss_pred CCcEEec-chhHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNT-PLCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~-gIaE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+.. |..=. ..++.|.|++++. -++++++ .++ |++-..| +.. +...+ +|+ .+|+...++..-
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i-~GDGsf~m~~~e-L~T-a~~~~------lpv-~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAV-CGDGGFMMNSQE-LET-AVRLG------LPL-VVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEE-EcchhHhccHHH-HHH-HHHhC------CCe-EEEEEeCCCcch
Confidence 6677643 22221 2556888888773 3566665 455 4433323 222 22222 455 455444333210
Q ss_pred --------CC---CCC-CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HG---GHY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~---g~~-hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.. +.. |..+-..+.+++ |+.-+.-.+++|+...++++++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVI 523 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 011 122223444445 77788889999999999999999999998
No 177
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=78.94 E-value=30 Score=29.48 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~-- 120 (305)
+.+.|.+.+.. +.+++ .|.+.. .+ ....+.-.. |.+|+..+- +=-..++.|.|+++.- -++++++ .++
T Consensus 7 ~~~~l~~~l~~-~~iiv--~d~g~~-~~-~~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i-~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKP-NDILV--AETGTS-WF-GALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILL-VGDGS 79 (183)
T ss_pred HHHHHHHhcCC-CCEEE--ECCchH-HH-hhhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEE-ECCch
Confidence 44555555543 34443 344421 12 123333333 677876521 1112456677777653 3566665 555
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC----CCC-CCC-C--chHH-HHHccC---CCcEEEeeCCHH
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----HGG-HYH-S--QSPE-AFFCHV---PGLKVVIPRSPR 188 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~----~~g-~~h-s--~~d~-a~~~~i---P~l~V~~P~d~~ 188 (305)
|.+-..| +.. ++..+ +|+ .+|+...++... ... ..+ . .-|. .+...+ |+...+...+++
T Consensus 80 f~~~~~e-l~t-a~~~~------~p~-~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~ 150 (183)
T cd02005 80 FQMTVQE-LST-MIRYG------LNP-IIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEG 150 (183)
T ss_pred hhccHHH-HHH-HHHhC------CCC-EEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHH
Confidence 5443333 332 33322 455 555444333210 111 111 1 1232 344443 236777889999
Q ss_pred HHHHHHHHhHh-CCCCEEE
Q 021963 189 QAKGLLLSCIR-DPNPVVF 206 (305)
Q Consensus 189 e~~~~l~~a~~-~~~Pv~i 206 (305)
|+...++++++ .++|++|
T Consensus 151 el~~al~~a~~~~~~p~li 169 (183)
T cd02005 151 ELDEALKDALFNRDKLSLI 169 (183)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 99999999998 7899998
No 178
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=78.90 E-value=28 Score=35.30 Aligned_cols=146 Identities=12% Similarity=0.155 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhH-hhhCCCcEEecch-hHH-HHHHHHHHHHhCCCeEEEEecccc--
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA-DRFGKSRVFNTPL-CEQ-GIVGFAIGLAAMGNRAIAEIQFAD-- 120 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~-~~~gp~r~~~~gI-aE~-~~v~~AaGlA~~G~~p~~~~~~~~-- 120 (305)
+...|.+.+...++.+++. |.+. .......+. -.. |.++++.+- .=. ..+..|.|++++--++++++ -++
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~~--~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i-~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGAN--TLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAI-EGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-CchH--HHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEE-ecCcc
Confidence 4466777765445665544 4221 100011222 233 777776542 111 25577788777744666665 555
Q ss_pred hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-C------C--C--CCCC--CchHHHHHccCCCcEEEeeCCH
Q 021963 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G------H--G--GHYH--SQSPEAFFCHVPGLKVVIPRSP 187 (305)
Q Consensus 121 F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~-~------~--~--g~~h--s~~d~a~~~~iP~l~V~~P~d~ 187 (305)
|.+-..| +. -++..+ +|+ .+|+...++.. . . . +... ..+..++.+++ |..-+.-.++
T Consensus 453 f~m~~~E-L~-Ta~r~~------lpi-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 522 (569)
T PRK09259 453 FGFSGME-VE-TICRYN------LPV-TVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTP 522 (569)
T ss_pred ccccHHH-HH-HHHHcC------CCE-EEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 5444433 33 234333 566 55544433320 0 0 0 0111 11222444555 6667778999
Q ss_pred HHHHHHHHHhHhCCCCEEE
Q 021963 188 RQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 188 ~e~~~~l~~a~~~~~Pv~i 206 (305)
+|+...+++++..++|++|
T Consensus 523 ~el~~al~~a~~~~~p~lI 541 (569)
T PRK09259 523 DELRHALTEAIASGKPTLI 541 (569)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999998
No 179
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.81 E-value=24 Score=35.75 Aligned_cols=111 Identities=5% Similarity=-0.070 Sum_probs=64.3
Q ss_pred CCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- .-. ..++.|.|++++. -++++++ -++ |++-..| +. .+...+ +|+ .+|+...++...
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~~------lpv-i~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINF-TGDGSILMNIQE-LM-TAVEYK------IPV-INIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-ecCchhcccHHH-HH-HHHHhC------CCe-EEEEEECCcchh
Confidence 678886532 222 3667888888774 3556665 444 5544444 32 234333 455 444443332210
Q ss_pred --------CC----CCCC--CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HG----GHYH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~----g~~h--s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+ +..+ ..+...+.+++ |..-+.-.+++|+...+++++..++|++|
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 533 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALI 533 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01 1111 11223455555 67778889999999999999999999999
No 180
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.68 E-value=30 Score=35.25 Aligned_cols=111 Identities=10% Similarity=0.023 Sum_probs=64.6
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|+..+- +=-..+..|.|++++- -++++++ .++ |.+.+.| +. -+...+ +|+ .+|+...++..
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDGsf~m~~~e-L~-Ta~r~~------lpv-iivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCI-TGEGSIQMCIQE-LS-TCLQYD------TPV-KIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhcCHHH-HH-HHHHcC------CCe-EEEEEECCcchH
Confidence 788887642 3334577788888873 3566665 555 5444433 22 233333 465 44444333321
Q ss_pred -------CCCCCC-C----CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 021963 159 -------GHGGHY-H----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 159 -------~~~g~~-h----s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 206 (305)
..++.. + ..-|. .+.+++ |..-+.-.+.+|+...++.+++. ++|++|
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~li 557 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFL 557 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 011111 1 01133 344555 77888889999999999999984 889998
No 181
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=78.52 E-value=26 Score=31.54 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC------CCeEEEEecccc--hH-HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC---
Q 021963 98 IVGFAIGLAAM------GNRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--- 165 (305)
Q Consensus 98 ~v~~AaGlA~~------G~~p~~~~~~~~--F~-~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h--- 165 (305)
.++.|.|+|++ ..++++- .++ |. ...++.+.. ++..+ ++. .++++...+.. -.+.++
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i--~GDG~~~~G~~~eal~~-a~~~~------l~~-li~vvdnN~~~-~~~~~~~~~ 178 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVL--LGDGELQEGSVWEAASF-AGHYK------LDN-LIAIVDSNRIQ-IDGPTDDIL 178 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE--ECcccccccHHHHHHHH-HHHcC------CCc-EEEEEECCCcc-ccCcHhhcc
Confidence 45677777765 4455544 444 33 135666653 44433 343 33334433332 222221
Q ss_pred CchHH-HHHccCCCcEEEeeC--CHHHHHHHHHHhHhC-CCCEEEec
Q 021963 166 SQSPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRD-PNPVVFFE 208 (305)
Q Consensus 166 s~~d~-a~~~~iP~l~V~~P~--d~~e~~~~l~~a~~~-~~Pv~i~~ 208 (305)
...|+ .+++++ |+.++.-. |.+++...++++.+. ++|++|..
T Consensus 179 ~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 179 FTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred CchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 23444 455655 77777766 899999999999886 89999843
No 182
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=77.45 E-value=4.4 Score=30.40 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=32.0
Q ss_pred eCCcEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.+.+++|++.|+ .-..|.+|.+.|++.|++.+.+|+..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 346899999883 57889999999999999999999753
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=77.33 E-value=8.4 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=31.8
Q ss_pred eCCcEEEEEeC----hhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G----~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
..++++|++.| +.-..|.+|.+.|++.|++...+|+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC
Confidence 35689999888 46788999999999999999999985
No 184
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=77.09 E-value=35 Score=34.26 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecc-hh-HHHHHHHHHHHHhCC-CeEEEEecccc-
Q 021963 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (305)
Q Consensus 45 a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~g-Ia-E~~~v~~AaGlA~~G-~~p~~~~~~~~- 120 (305)
.+...|.+.+..+ .+++ .|.+....| ....+.-.. |.+|+..+ .. =-..+..|.|++++. -++++++ -++
T Consensus 363 ~~~~~l~~~l~~~-~ii~--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDG 436 (539)
T TIGR02418 363 EIIKAMQAIVTDD-VTVT--VDMGSHYIW-MARYFRSYR-ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSV-SGDG 436 (539)
T ss_pred HHHHHHHhhCCCC-CEEE--ECCcHHHHH-HHHhcccCC-CCceecCCCccccccHHHHHHHHHHhCCCCcEEEE-Ecch
Confidence 3555666665533 3333 343321112 122332233 77876542 11 113556778877763 3556665 455
Q ss_pred -hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--------CC---CC-CCCchHHHHHccCCCcEEEeeCCH
Q 021963 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG---GH-YHSQSPEAFFCHVPGLKVVIPRSP 187 (305)
Q Consensus 121 -F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--------~~---g~-~hs~~d~a~~~~iP~l~V~~P~d~ 187 (305)
|.+...| +. .+...+ +|+ .+|+...++... .+ +. .+..+...+.+.+ |+.-..-.++
T Consensus 437 sf~m~~~e-L~-Ta~~~~------lpi-~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~ 506 (539)
T TIGR02418 437 GFLFSSME-LE-TAVRLK------LNI-VHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESP 506 (539)
T ss_pred hhhchHHH-HH-HHHHhC------CCe-EEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 5444433 33 244433 465 555444333210 01 00 1112233455555 7778889999
Q ss_pred HHHHHHHHHhHhCCCCEEE
Q 021963 188 RQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 188 ~e~~~~l~~a~~~~~Pv~i 206 (305)
+|+...++++++.++|.+|
T Consensus 507 ~eL~~al~~a~~~~~p~lI 525 (539)
T TIGR02418 507 DQLEPTLRQAMEVEGPVVV 525 (539)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999
No 185
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=76.84 E-value=46 Score=28.82 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=21.9
Q ss_pred EeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 182 VIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 182 ~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
+...|.+++...++.+.+.++|++|.
T Consensus 161 vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 161 VDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred ECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 56678899999999888878999984
No 186
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=76.51 E-value=39 Score=34.47 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
++.+++ |+.-+.-.+.+|+...++++++.++|++|
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 541 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVL 541 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 455555 77888889999999999999999999999
No 187
>PRK10853 putative reductase; Provisional
Probab=76.49 E-value=5.6 Score=31.77 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
...+.+|.+-|++.|+.++++|+.. .|++.+.|.+.+.+.
T Consensus 10 C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 10 CDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 4678889999999999999999997 899999998887654
No 188
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=75.81 E-value=23 Score=35.15 Aligned_cols=214 Identities=18% Similarity=0.092 Sum_probs=102.2
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeccc----CCCcccccchhhHhhhCCCcE-EecchhHHHHHHHHHHHHhCCC-
Q 021963 37 GKSLNLYSAINQALHIALETDPRAYVFGEDV----GFGGVFRCTTGLADRFGKSRV-FNTPLCEQGIVGFAIGLAAMGN- 110 (305)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~----~~g~~~~~~~~~~~~~gp~r~-~~~gIaE~~~v~~AaGlA~~G~- 110 (305)
+.++++.+|..+.|....-+.-+++-+-+.+ +.|.+.+.-+.| +.. |++. .--|-.||+|.-.|++.|..-.
T Consensus 4 TvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL-~~~-~~~l~~yqg~NEQgMAhaAiayaKq~~R 81 (617)
T COG3962 4 TVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEAL-YQV-RDHLPTYQGHNEQGMAHAAIAYAKQHRR 81 (617)
T ss_pred eehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHH-HhC-ccccchhhcccHhHHHHHHHHHHHHHhh
Confidence 4567788888777776655443322221111 122222111222 233 4432 2346799999999999999743
Q ss_pred -eEEEEe-cccchHHhHHHHHHHHHhhcccccCCCcccceeEEE-cCCcC-CCCCCCCCCchHHHHHccCCCcEEEee--
Q 021963 111 -RAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHSQSPEAFFCHVPGLKVVIP-- 184 (305)
Q Consensus 111 -~p~~~~-~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~-~~~g~-~~~~g~~hs~~d~a~~~~iP~l~V~~P-- 184 (305)
|-+.++ +.+|.. -.+...+++.. .+.+|+ .+. ++... -..|+--++.|+..-..---| .-|.|
T Consensus 82 rr~~A~tsSiGPGA----~NmvTaAalA~---~NrlPv---LllPgDvfA~R~PDPVLQQ~E~~~d~~it~N-DcfrPVS 150 (617)
T COG3962 82 RRIYAVTSSIGPGA----ANMVTAAALAH---VNRLPV---LLLPGDVFATRQPDPVLQQLEQFGDGTITTN-DCFRPVS 150 (617)
T ss_pred ceeeEEecccCCcH----HHHHHHHHHHH---hhcCce---EeeccchhcccCCChHHHhhhccccCceecc-cccccHH
Confidence 344442 233332 12222344332 122443 332 11111 234554443333211000001 12222
Q ss_pred ------CCHHHHHHHHHHhHh------CCCCEEEeccccccccCccCCCCCCCc-ccCCce----------------EEe
Q 021963 185 ------RSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSVEEVPEDDYM-LPLSEA----------------EVI 235 (305)
Q Consensus 185 ------~d~~e~~~~l~~a~~------~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~gk~----------------~~~ 235 (305)
.-|+++...+..|++ .-+|+-+-.+...- .+.++-+.. |..--+ ..+
T Consensus 151 RYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq----~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~li 226 (617)
T COG3962 151 RYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQ----AEAYDYPESFFEKRVWRIRRPPPDERELADAAALI 226 (617)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhh----hhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 458999999999998 25899884443211 111110000 111111 122
Q ss_pred ee-CCcEEEEEeChhHHHHHHHHHHHHhc-CCCe
Q 021963 236 RE-GSDITLVGWGAQLSIMEQACLDAEKE-GISC 267 (305)
Q Consensus 236 ~~-g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~ 267 (305)
|. .+-++|.+-|.....|.++...+.+. ||.+
T Consensus 227 k~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 227 KSAKKPLIVAGGGVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred HhcCCCEEEecCceeechHHHHHHHHHHhcCCce
Confidence 33 34566666667788888888877654 6654
No 189
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.62 E-value=39 Score=34.26 Aligned_cols=111 Identities=11% Similarity=-0.023 Sum_probs=63.5
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++. -++++++ .++ |++-..| |. .+...+ +|+ .+|+...++...
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpv-~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCV-TGDGSIQMNIQE-LS-TALQYD------IPV-KIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEE-EcchHhhccHHH-HH-HHHHcC------CCe-EEEEEeCCccHH
Confidence 678886542 1123566777777763 3566665 555 5544433 32 244444 565 455444333210
Q ss_pred --------CCCC-CC-----CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 021963 160 --------HGGH-YH-----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 160 --------~~g~-~h-----s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 206 (305)
.++. .+ ..+...+.+++ |..-..-.++.|+..+++.+++. ++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 0111 01 12222455555 66778889999999999999985 899988
No 190
>PRK08611 pyruvate oxidase; Provisional
Probab=75.12 E-value=53 Score=33.35 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=61.5
Q ss_pred CCcEEec-chhHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNT-PLCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~-gIaE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|+.. +..-. ..+..|.|+++.- -++++++ -++ |++-..| +. .+...+ +|+ .+|+...++..
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDGsf~m~~~e-L~-Ta~r~~------l~~-iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAI-CGDGGFSMVMQD-FV-TAVKYK------LPI-VVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEE-EcccHHhhhHHH-HH-HHHHhC------CCe-EEEEEeCCcchH
Confidence 6677642 22111 2455666766652 4666665 555 5544433 22 244433 455 44444333321
Q ss_pred ------CCCCC---CC--CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 ------GHGGH---YH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ------~~~g~---~h--s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
..+.. .. ..+..++.+++ |..-+...+++|+...++++++.++|++|
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVII 525 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00111 11 12223444444 66778889999999999999999999999
No 191
>PRK06154 hypothetical protein; Provisional
Probab=74.80 E-value=61 Score=32.89 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++- -++++++ .++ |++-..| +. -+...+ +|+ .+|+...++...
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpi-~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINL-WGDAAFGMTGMD-FE-TAVRER------IPI-LTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHH-HH-HHHHhC------CCe-EEEEEECCccce
Confidence 788887531 1113556777777763 4677775 555 4444333 33 233333 465 444443333211
Q ss_pred C-------CCCCCC---chHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 021963 160 H-------GGHYHS---QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (305)
Q Consensus 160 ~-------~g~~hs---~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~---~~~Pv~i 206 (305)
. ++.... .-|. ++.+++ |+.-+.-.+++|+..+++.+++ .++|++|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALL 550 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEE
Confidence 0 111110 1133 345555 7777788899999999999996 5789998
No 192
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=74.68 E-value=7.7 Score=30.60 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
....|.+|.+.|++.|+++..+|+.. .|+..+.|.+.++..+
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 45678899999999999999999987 8999999988887654
No 193
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=74.42 E-value=70 Score=32.56 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=62.5
Q ss_pred CCcEEecc-hhHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTP-LCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~g-IaE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+ ..=. ..+..|.|++++- -++++++ .++ |++.+.| +. .+...+ +|+ .+|+...++...
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~~-~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI-SGDASFQMNLQE-LG-TIAQYN------LPI-KIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEE-EcchhhhhhHHH-HH-HHHHhC------CCe-EEEEEECCcchH
Confidence 67888642 1111 2556777777763 3566665 455 5544433 22 234443 455 444443332110
Q ss_pred --------CCCC-C------CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGH-Y------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~-~------hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++. . +..+...+.+.+ |+.-..-.+++|+...++++++.++|.+|
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 550 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLI 550 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0100 0 112223445555 67777889999999999999999999999
No 194
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=74.31 E-value=8 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
....|.+|.+.|++.|+++.++|+.. .|++.+.|.+.++..+
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 45678889999999999999999887 7999999988877654
No 195
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=74.14 E-value=12 Score=26.81 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=34.9
Q ss_pred cEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-ccCcEEEEe
Q 021963 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLPRS 297 (305)
Q Consensus 240 dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvvE 297 (305)
++.|++.+. ....|++.++.|+++|+.+.+.... +.++ +.+...-+ +...++++.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEc
Confidence 677887776 4578999999999999988774432 2343 33433222 234566664
No 196
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=74.08 E-value=9.5 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
....+.+|.+.|+++|++++++|+.. .|++.+.|.+.+++.
T Consensus 10 ~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 10 GCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 35778899999999999999999987 799999998887764
No 197
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.92 E-value=40 Score=34.26 Aligned_cols=111 Identities=14% Similarity=0.017 Sum_probs=61.6
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|+|++++. -++++++ .++ |.+...| +.. +...+ +|+ .+|+...++...
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~T-a~~~~------lpi-~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICI-AGDASFQMNIQE-LQT-IAENN------IPV-KVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEE-EecchhhccHHH-HHH-HHHhC------CCe-EEEEEECCccHH
Confidence 677876521 1123567777777764 2566665 555 5545444 332 34433 465 455444333210
Q ss_pred --------CCC----CCC-CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGG----HYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g----~~h-s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++ ... ..+...+.+++ |..-..-.+++|+..+++.+++.++|++|
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 540 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVV 540 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 010 011 11222344444 55555558999999999999999999988
No 198
>PLN02470 acetolactate synthase
Probab=73.78 E-value=49 Score=33.65 Aligned_cols=111 Identities=12% Similarity=0.036 Sum_probs=62.9
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++. -++++++ -++ |.+...| |. .+...+ +++ .+|+...++...
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~v-~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDI-DGDGSFIMNIQE-LA-TIHVEN------LPV-KIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HH-HHHHhC------CCe-EEEEEeCCcchH
Confidence 778876420 1123667788877774 3556665 455 5444333 22 233333 455 455444333210
Q ss_pred --------CCCC-C------------CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGH-Y------------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~-~------------hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++. . +..+-.++.+++ |..-..-.+++|+..+++++++.++|++|
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 552 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLL 552 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0000 0 012223445555 67777889999999999999999999998
No 199
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=73.76 E-value=13 Score=29.38 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=38.4
Q ss_pred CcEEEEEeC--h-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHH-HhccCcEEEEeCC
Q 021963 239 SDITLVGWG--A-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLPRSSG 299 (305)
Q Consensus 239 ~dv~Iia~G--~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~-~~~~~~vvvvEe~ 299 (305)
.++.|++.+ . ....+++.++.|+++|+++.+-+ . +.+..+ ++.. -.+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~kq-lk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGRR-YARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHHH-HHHhHhcCCCEEEEECcC
Confidence 468888888 4 46788899999999999998843 3 555443 3332 2345667776654
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=73.53 E-value=5.9 Score=28.18 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=41.1
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc-cCcEEEEeCCccccC
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLPRSSGYWRFW 304 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~-~~~vvvvEe~~~~~~ 304 (305)
+++|.+. .....|.+|.+.|++.|++.+.+|+..-.+. .+.+.+.... +-..|++.....++|
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~iGg~ 65 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEKLVGGL 65 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCH
Confidence 4555555 4457799999999999999999998763322 2334443332 235666776666654
No 201
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=73.48 E-value=16 Score=35.30 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=46.6
Q ss_pred EEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 233 EVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 233 ~~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
.++.+|.+++++..|..-+.--+.++.. |.++.+++..+=+|+|-+.|.+.+++.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~---g~~v~~~~~~wg~~v~p~~v~~~L~~~ 129 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERY---GAEVVVLEVEWGEAVDPEEVEEALDKD 129 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHh---CCceEEEeCCCCCCCCHHHHHHHHhcC
Confidence 3556788999999999888776666554 999999999999999999999999855
No 202
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=73.45 E-value=50 Score=33.83 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=61.7
Q ss_pred CCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|++|+..+- .-. ..+..|.|++++- -|+++++ .++ |++...| +. .+...+ +|+ .+|+...++..
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i-~GDG~f~m~~~e-L~-Ta~r~~------lpv-i~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICI-AGDASFLMNIQE-LG-TLAQYG------INV-KTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEE-EcchHhhhhHHH-HH-HHHHhC------CCe-EEEEEECCcchH
Confidence 788876421 111 2445667777663 4667776 555 5544433 22 233333 465 44444332211
Q ss_pred ---------CC--CCCC---CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 ---------GH--GGHY---HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 ---------~~--~g~~---hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+. .+.. +..+...+..++ |+.-+.-.+++|+...++++++.++|++|
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lI 554 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLI 554 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 0000 111122344445 67777889999999999999999999998
No 203
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=73.31 E-value=25 Score=35.72 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc-
Q 021963 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD- 120 (305)
Q Consensus 45 a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~- 120 (305)
..-+.|.+++.. +. +++.|++....| ....+.-.. |.+|+..|- .-. ..+..|+|+++.- -|+++++ -++
T Consensus 363 ~v~~~l~~~~~~--da-iv~~d~G~~~~w-~a~~~~~~~-p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i-~GDG 436 (550)
T COG0028 363 YVIKVLRELLPD--DA-IVVTDVGQHQMW-AARYFDFYR-PRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAI-AGDG 436 (550)
T ss_pred HHHHHHHHhCCC--Ce-EEEeCCcHHHHH-HHHhcccCC-CCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEE-Eccc
Confidence 344555555544 22 344566522222 122222233 778887631 111 2234556666653 3677776 555
Q ss_pred -hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--------CCCCC-CC---Cch-HHHHHccCCCcEEEeeCC
Q 021963 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGGH-YH---SQS-PEAFFCHVPGLKVVIPRS 186 (305)
Q Consensus 121 -F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--------~~~g~-~h---s~~-d~a~~~~iP~l~V~~P~d 186 (305)
|++...|-. -+...+ +|+ .+|+...++.. ..++. .+ ..- ...+..++ |..-+.-.+
T Consensus 437 ~F~m~~qEL~--Ta~r~~------lpv-~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~ 506 (550)
T COG0028 437 GFMMNGQELE--TAVRYG------LPV-KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVET 506 (550)
T ss_pred HHhccHHHHH--HHHHhC------CCE-EEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCC
Confidence 665544422 233333 466 55555333211 01111 11 111 22333444 677777889
Q ss_pred HHHHHHHHHHhHhCCCCEEE
Q 021963 187 PRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 187 ~~e~~~~l~~a~~~~~Pv~i 206 (305)
++|+...+++++..++|++|
T Consensus 507 ~~el~~al~~al~~~~p~li 526 (550)
T COG0028 507 PEELEEALEEALASDGPVLI 526 (550)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999888
No 204
>PRK10026 arsenate reductase; Provisional
Probab=73.29 E-value=12 Score=31.01 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
.....|.+|.+.|++.|++++++|+.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 345678999999999999999999998 8999999998888654
No 205
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=73.13 E-value=17 Score=36.39 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=82.9
Q ss_pred HHHHHHHHHhc-C-CCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHHHHHHHHHhC-CCeEEEEecccchH
Q 021963 46 INQALHIALET-D-PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI 122 (305)
Q Consensus 46 ~~~~L~~l~~~-~-~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~AaGlA~~-G~~p~~~~~~~~F~ 122 (305)
+++.|-+.+.+ + +.++.+-+|-..+ +-++.++.+.=|.+.+ -.|.|+.=.|=|.|.. |.-.++. ||+..-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFNL~-----LLD~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~Vt-TfgVGe 78 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFNLS-----LLDKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVT-TFGVGE 78 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCcccHH-----HHHHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEE-Eeccch
Confidence 56666544443 3 6678887885432 2333444422355555 4899999999999986 8777777 599866
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeE-EEcCCcCCC-CCC----CCCC--chHHHH-HccCCCc--EEEeeCCHHHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLT-VRAPYGAVG-HGG----HYHS--QSPEAF-FCHVPGL--KVVIPRSPRQAK 191 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv-~~~~~g~~~-~~g----~~hs--~~d~a~-~~~iP~l--~V~~P~d~~e~~ 191 (305)
.-|++-|. -+|.. ++ |++ +++ ++.. ..+ -||. ..|... +|...++ ....=-|.+++-
T Consensus 79 LSAlNGIA--GsYAE-------~v-pVihIVG--~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~ 146 (561)
T KOG1184|consen 79 LSALNGIA--GAYAE-------NV-PVIHIVG--VPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAP 146 (561)
T ss_pred hhhhcccc--hhhhh-------cC-CEEEEEC--CCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhH
Confidence 67777665 34332 33 433 232 2221 112 2663 345433 2222222 122223445554
Q ss_pred H----HHHHhHhCCCCEEEecccccc
Q 021963 192 G----LLLSCIRDPNPVVFFEPKWLY 213 (305)
Q Consensus 192 ~----~l~~a~~~~~Pv~i~~~~~l~ 213 (305)
. +++.++...+||||-.|-.+.
T Consensus 147 ~~ID~aI~~~~~~~rPVYi~iP~n~~ 172 (561)
T KOG1184|consen 147 EQIDKAIRTALKESKPVYIGVPANLA 172 (561)
T ss_pred HHHHHHHHHHHHhcCCeEEEeecccc
Confidence 4 555555579999997776554
No 206
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=72.44 E-value=59 Score=32.92 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=63.0
Q ss_pred CCcEEecc-hh-HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~g-Ia-E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+ .. =-..+..|.|++++. -++++++ -++ |.+...| +. .+...+ +|+ .+|+...++..-
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i-~GDGsf~m~~~e-L~-Ta~~~~------lpv-~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL-SGDGGFSMLMGD-FL-SLVQLK------LPV-KIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE-ecCcHHhccHHH-HH-HHHHhC------CCe-EEEEEeCCcccc
Confidence 67887542 11 013577888888763 4666665 555 4444433 33 233333 455 455444332210
Q ss_pred ------CCC-----C-CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 ------HGG-----H-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 ------~~g-----~-~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
..+ + .+..+...+..++ |+.-+.-.+++|+...++++++.++|++|
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALV 525 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 001 0 0111122334444 77778889999999999999999999999
No 207
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=71.62 E-value=57 Score=33.06 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--C--C---CCCCC-
Q 021963 97 GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G--H---GGHYH- 165 (305)
Q Consensus 97 ~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~--~--~---~g~~h- 165 (305)
..+++|.|++++. -++++++ .++ |.+...| +. .+...+ +|+ .+|+...++.. . . .+..+
T Consensus 441 ~~l~~aiGa~la~~~~~vv~i-~GDGsf~~~~~e-l~-ta~~~~------l~~-~~vv~NN~~~g~~~~~~~~~~~~~~~ 510 (578)
T PRK06112 441 WGVPMAIGAKVARPGAPVICL-VGDGGFAHVWAE-LE-TARRMG------VPV-TIVVLNNGILGFQKHAETVKFGTHTD 510 (578)
T ss_pred cHHHHHHHHHhhCCCCcEEEE-EcchHHHhHHHH-HH-HHHHhC------CCe-EEEEEeCCccCCEEeccccccCCccc
Confidence 5677888888774 4566665 555 4433322 33 244444 455 44444333211 0 0 01111
Q ss_pred -----CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 166 -----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 166 -----s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
..+...+.+++ |..-+.-.+++|+...++++++.++|++|
T Consensus 511 ~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 555 (578)
T PRK06112 511 ACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLI 555 (578)
T ss_pred cCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11222344444 66667778999999999999999999999
No 208
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=71.44 E-value=12 Score=27.81 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=39.2
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHH-HhccCcEEEEeC
Q 021963 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLPRSS 298 (305)
Q Consensus 240 dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~-~~~~~~vvvvEe 298 (305)
++.|+..|. ....|.+.++.|++.|+.+.+-+ .-..+.+ .++.. ..+.+-++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k-~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGK-QIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHH-HHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhH-HHHHHhhcCCeEEEEECc
Confidence 467888888 46789999999999999988877 3344544 34443 345667777653
No 209
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=71.26 E-value=18 Score=36.82 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch-h-HHHHHHHHHHHHhCC-CeEEEEe
Q 021963 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEI 116 (305)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI-a-E~~~v~~AaGlA~~G-~~p~~~~ 116 (305)
+..+. +...|.+.+.+| .+++ .|.+....| ....+.-.. |.+|+..+- . =-..+..|.|++++. -|+++++
T Consensus 369 l~p~~-~~~~l~~~l~~d-~ivv--~D~G~~~~~-~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i 442 (588)
T TIGR01504 369 VKPQR-VYEEMNKAFGRD-VCYV--TTIGLSQIA-GAQMLHVYK-PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAL 442 (588)
T ss_pred cCHHH-HHHHHHHhCCCC-CEEE--ECCcHHHHH-HHHhccccC-CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEE
Confidence 44433 444555555433 3443 454422111 122333233 778886531 1 112455666666663 4667665
Q ss_pred cccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC--------CCC----C-C----------CCchHHH
Q 021963 117 QFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGG----H-Y----------HSQSPEA 171 (305)
Q Consensus 117 ~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~--------~~g----~-~----------hs~~d~a 171 (305)
.++ |++-+.| +. -+...+ +|+ .+|+...++... .+. . . +..+..+
T Consensus 443 -~GDG~f~m~~~E-L~-Ta~r~~------lpv-v~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 512 (588)
T TIGR01504 443 -SGDYDFQFMIEE-LA-VGAQHN------IPY-IHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVK 512 (588)
T ss_pred -EcchHhhccHHH-HH-HHHHhC------CCe-EEEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHH
Confidence 555 5444433 32 233333 455 444443333210 000 0 0 0122234
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 021963 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (305)
Q Consensus 172 ~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i 206 (305)
+.+++ |..-..-.+++|+...++++++ .++|++|
T Consensus 513 lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lI 550 (588)
T TIGR01504 513 VAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVV 550 (588)
T ss_pred HHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 55555 6677777999999999999995 6899998
No 210
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=70.77 E-value=41 Score=34.18 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=61.2
Q ss_pred CCcEEecchhHHH----HHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC
Q 021963 85 KSRVFNTPLCEQG----IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (305)
Q Consensus 85 p~r~~~~gIaE~~----~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~ 157 (305)
|.+|+..+- .+ .+..|.|++++- -++++++ .++ |++-..| +. .++..+ +|+ .+|+...++.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i-~GDGsf~~~~~e-l~-Ta~~~~------lpv-~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISM-SGDGGLSMLLGE-LL-TVKLYD------LPV-KVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEE-EcCchHhhhHHH-HH-HHHHhC------CCe-EEEEEECCcc
Confidence 567775431 23 344788877763 3555554 454 5543333 32 355544 455 4554443332
Q ss_pred CC-------CCCCCC----CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 158 VG-------HGGHYH----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 158 ~~-------~~g~~h----s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.. .+...+ ..-|. .+..++ |..-..-.+++|+..+++++++.++|++|
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 525 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALV 525 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 10 111111 11233 344444 55666778999999999999999999999
No 211
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=70.48 E-value=72 Score=31.94 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=61.7
Q ss_pred CCcEEecch-hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC-
Q 021963 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG- 159 (305)
Q Consensus 85 p~r~~~~gI-aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~- 159 (305)
|.+|+..+. +=-..+..|.|++++. -++++++ .++ |++-. ..+. .++..+ +|+ .+|+...++...
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~f~~~~-~eL~-ta~~~~------lp~-~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGL-IGDGSAMYSI-QALW-SAAQLK------LPV-TFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEE-EeCchHhhhH-HHHH-HHHHhC------CCc-EEEEEeChHHHHH
Confidence 678876311 1113556888888763 3455554 555 54332 2233 233333 455 455444333210
Q ss_pred --------CCCCC----CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGGHY----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g~~----hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+... +..+...+.+.+ |+..+.-.+..|+...++++++.++|++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 525 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLV 525 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 01110 111222344445 77778888999999999999998999988
No 212
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=69.89 E-value=15 Score=29.95 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
.....|.+|.+.|++.|++.+++|+.. .|++.+.|.+.+++.
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 345778899999999999999999886 799999998888765
No 213
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=69.80 E-value=10 Score=36.64 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=44.3
Q ss_pred cEEEE---EeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEE
Q 021963 240 DITLV---GWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLP 295 (305)
Q Consensus 240 dv~Ii---a~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvv 295 (305)
.|+|+ .||++-..|...++-|.+.|+++.++++.+- |.+.|.+.+.+.+.+++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 45555 5788889999999999999999999999996 77888888888777765
No 214
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=68.96 E-value=15 Score=31.29 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=35.3
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLP 295 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvv 295 (305)
+|++++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.++..+-||+
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEE
Confidence 46789999999886653 4566777898888888542 455566776664444
No 215
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=68.82 E-value=11 Score=29.43 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
.....|.+|.+.|+++|++.+.+|+.. .|+..+.|.+.+++.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~~ 49 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSG 49 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHcC
Confidence 345778999999999999999999887 6888888877776543
No 216
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=68.46 E-value=34 Score=34.59 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCC-----------
Q 021963 98 IVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY----------- 164 (305)
Q Consensus 98 ~v~~AaGlA~~G~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~----------- 164 (305)
.++.|.|++++--++++++ -++ |.+-.-| +.. +...+ +|+ .+|+...+|..-..-..
T Consensus 430 ~lpaaiGaala~~~~vv~i-~GDGsf~~~~~e-L~T-a~r~~------l~i-~ivVlNN~g~~~~~~~~~~~~~~~~~~~ 499 (568)
T PRK07449 430 LLSTAAGVARASAKPTVAL-IGDLSFLHDLNG-LLL-LKQVP------APL-TIVVVNNNGGGIFSLLPQPEEEPVFERF 499 (568)
T ss_pred HHHHHHHHHhcCCCCEEEE-echHHhhcCcHH-HHh-hcccC------CCe-EEEEEECCCCccccCCCCCCCcchhhHh
Confidence 5788888888744566665 555 4433323 221 22222 455 45544443321110000
Q ss_pred ----CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 165 ----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 165 ----hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+..+-.++...+ |..-+...+++|+...++++++.++|++|
T Consensus 500 ~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 500 FGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred hcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 111111222333 55667789999999999999998999998
No 217
>PRK07586 hypothetical protein; Validated
Probab=67.67 E-value=1.2e+02 Score=30.24 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+.+++ |..-..-.+++|+...++++++.++|++|
T Consensus 476 ~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 476 ALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 344444 55666678999999999999998999988
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=66.88 E-value=17 Score=27.81 Aligned_cols=43 Identities=30% Similarity=0.311 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
.....|.+|.+.|++.|++.+.+|+.. .|++.+.+.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 346788999999999999999999985 7888888888776543
No 219
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=66.40 E-value=29 Score=29.65 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHhCCCCEEEecccccccc------CccCCCCC-CCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHH
Q 021963 187 PRQAKGLLLSCIRDPNPVVFFEPKWLYRL------SVEEVPED-DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (305)
Q Consensus 187 ~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~------~~~~~~~~-~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~ 259 (305)
-+|..+++-+|+--+|-+||---..+-.- ..+.++.. .+.-..++...+.+-.+|.|++-.+.-..+.+.+++
T Consensus 24 iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~ 103 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQ 103 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 36777888888888999999311111000 00011100 000012223334455678999999988899999999
Q ss_pred HHhcCCCeEEEE
Q 021963 260 AEKEGISCELID 271 (305)
Q Consensus 260 L~~~Gi~~~vI~ 271 (305)
|.++|+.+-+|.
T Consensus 104 L~~~gi~~v~Vs 115 (172)
T PF10740_consen 104 LIEQGIPFVGVS 115 (172)
T ss_dssp HHHHT--EEEEE
T ss_pred HHHCCCCEEEEE
Confidence 999999999988
No 220
>PRK11269 glyoxylate carboligase; Provisional
Probab=66.02 E-value=72 Score=32.48 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=63.2
Q ss_pred CCcEEecch-hHHH-HHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL-CEQG-IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI-aE~~-~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|++.|- .=.+ .+..|+|++++. -++++++ -++ |++...| +. -+...+ +++ .+|+...++..
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------lpv-~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVAL-SGDYDFQFLIEE-LA-VGAQFN------LPY-IHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEE-EccchhhcCHHH-HH-HHHHhC------CCe-EEEEEeCCchhH
Confidence 778887642 2222 566778877774 4666665 555 5544433 22 133333 455 44444333221
Q ss_pred ------C-CCCCC---------------CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 021963 159 ------G-HGGHY---------------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (305)
Q Consensus 159 ------~-~~g~~---------------hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i 206 (305)
+ .+..+ +..+...+.+++ |..-..-.+++|+...++++++ .++|++|
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 0 00000 011222344555 6778888999999999999995 6899998
No 221
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=65.99 E-value=91 Score=31.45 Aligned_cols=35 Identities=9% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.+.+++ |+.-..-.+++|+...++++++.++|++|
T Consensus 499 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 533 (557)
T PRK08199 499 ALARAY-GGHGETVERTEDFAPAFERALASGKPALI 533 (557)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344545 66677778999999999999999999998
No 222
>PRK12559 transcriptional regulator Spx; Provisional
Probab=65.58 E-value=22 Score=28.84 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
....|.+|.+.|++.|++.+.+|+.. .|++.+.|.+.++.+
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 9 SCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 45778899999999999999999986 799999998888764
No 223
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=65.06 E-value=20 Score=28.20 Aligned_cols=42 Identities=24% Similarity=0.130 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
.....|.+|.+.|++.|++.+++|+.. .|++.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 456788999999999999999999865 788999888887754
No 224
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=64.79 E-value=60 Score=33.23 Aligned_cols=111 Identities=11% Similarity=-0.006 Sum_probs=65.2
Q ss_pred CCcEEecch-hHHH-HHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CEQG-IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE~~-~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|++.+- .-.+ .++.|.|++++. -++++++ .++ |++...| +. .+...+ +++ .+|+...++...
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------lpv-~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI-DGDGCFQMTNQE-LA-TCAIEG------IPI-KVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE-EcchhhhccHHH-HH-HHHHcC------CCe-EEEEEECCchHH
Confidence 788887642 3333 578888888874 4677675 555 4433322 22 233333 455 555444333210
Q ss_pred --------CCCC--------CC-C-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 021963 160 --------HGGH--------YH-S-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 160 --------~~g~--------~h-s-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 206 (305)
.++. .| . .+..++.+++ |+.-+.-.+.+|+..+++++++. ++|++|
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lI 571 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVI 571 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 0110 01 1 2223455555 67777889999999999999985 899999
No 225
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=64.23 E-value=25 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=37.2
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 240 dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++.|+..+. ....|++.++.|++.|+.+.+-+ .. +.+..+.-.....+.+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 467777664 46788889999999999888644 22 455544322222344677777754
No 226
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=63.72 E-value=23 Score=29.92 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=38.5
Q ss_pred CcEEEEEeChhH----HHHHHHHHHHHhcCC---CeEEEEeccccCCCHHHHHHHHhccCcEEEEeC
Q 021963 239 SDITLVGWGAQL----SIMEQACLDAEKEGI---SCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~~~----~~aleAa~~L~~~Gi---~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe 298 (305)
..++|+++|..+ ..-..++++|++... +++|||..+.-|. +...+..++++++|+-
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 367899999865 344566777776644 6889999996432 3355667777888864
No 227
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=63.47 E-value=29 Score=28.49 Aligned_cols=55 Identities=29% Similarity=0.271 Sum_probs=38.4
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhc-C--CCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 241 ITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 241 v~Iia~G~~~----~~aleAa~~L~~~-G--i~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++|+++|+.. .....+++.|++. + -.+++++..+.- .+ +.+.+.+++++|+|+--
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~-l~~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LE-LLPYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HH-HHHHHhcCCEEEEEEcc
Confidence 3678888876 3466777888765 3 468899988852 23 33556788999999873
No 228
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=63.14 E-value=44 Score=26.58 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=48.5
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCCCCccc---CCceEEeeeCCcEEEEEeChhHHHHHHH
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP---LSEAEVIREGSDITLVGWGAQLSIMEQA 256 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~---~gk~~~~~~g~dv~Iia~G~~~~~aleA 256 (305)
.|+.|.+.+|+..++++|.+++.|+.++-...-.-. .....+...+. +.+...+.+....+.+..|.......+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~--~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTG--QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSS--TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCccc--ccccCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 589999999999999999999999999643211000 00101111111 2232333445678889999988877765
Q ss_pred HH
Q 021963 257 CL 258 (305)
Q Consensus 257 a~ 258 (305)
++
T Consensus 81 l~ 82 (139)
T PF01565_consen 81 LA 82 (139)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 229
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.11 E-value=1.2e+02 Score=30.64 Aligned_cols=111 Identities=10% Similarity=-0.034 Sum_probs=62.0
Q ss_pred CCcEEecch-h-HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-a-E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..|- . =-..+..|.|++++. -++++++ -++ |.+...| |. .+...+ +++ .+|+...++...
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~r~~------l~v-~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCV-TGDGSIQMNIQE-LS-TALQYE------LPV-LVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEE-EcchhhhccHHH-HH-HHHHhC------CCe-EEEEEeCchhhH
Confidence 678887641 1 113556777777763 3455554 444 5544433 22 244444 565 454443332210
Q ss_pred --------CCCCCC------CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC---CCCEEE
Q 021963 160 --------HGGHYH------SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (305)
Q Consensus 160 --------~~g~~h------s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~---~~Pv~i 206 (305)
.++... ..+...+.+++ |..-+.-.+++|+..+++.+++. ++|.+|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lI 543 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEE
Confidence 111111 11223455555 56667779999999999999985 899998
No 230
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.04 E-value=31 Score=25.38 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=37.7
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 240 dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+....=.....+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 356776654 467889999999999999987 5443 455544322233456777777644
No 231
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=63.04 E-value=13 Score=30.18 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEeccc-cCC-------------CHHHHHHHHhccCcEEEEeCCccc
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTL-IPW-------------DKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i-~P~-------------d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
|.+...+..+++.|++.|+++++||++-. .|+ +.+.+.+.++..+.+|++=..|.+
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~ 83 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNG 83 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTT
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcC
Confidence 44566677777888888999999999986 221 123456677778888876555443
No 232
>PRK07524 hypothetical protein; Provisional
Probab=63.02 E-value=79 Score=31.68 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=62.0
Q ss_pred CCcEEe-cc-h-hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC
Q 021963 85 KSRVFN-TP-L-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (305)
Q Consensus 85 p~r~~~-~g-I-aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~ 158 (305)
|.+|++ .+ . +=-..+..|.|++++- -++++++ .++ |.+...| +. .+...+ +|+ .+|+...++..
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~-ta~~~~------lpi-~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCL-VGDGGLQFTLPE-LA-SAVEAD------LPL-IVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-HH-HHHHhC------CCe-EEEEEECCchH
Confidence 678886 21 1 1112557788888873 3555554 444 5544444 33 344444 465 44444333321
Q ss_pred -------CCCCC-----CCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 -------GHGGH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 -------~~~g~-----~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
..+.. .+..+..++.+++ |+.-..-.+++|+...++++++.++|++|
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 524 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLI 524 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00111 1122223444554 55566668999999999999999999998
No 233
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=62.96 E-value=87 Score=31.78 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCcEEecchhHHHH----HHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcC
Q 021963 85 KSRVFNTPLCEQGI----VGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (305)
Q Consensus 85 p~r~~~~gIaE~~~----v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~ 157 (305)
|.+|+..+ -.+. ++.|.|++++. -++++++ .++ |.+-+.| +. .+...+ +|+ .+|+...++.
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Tavr~~------lpv-i~vV~NN~~y 487 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAY-AGDGAWGMSMNE-IM-TAVRHD------IPV-TAVVFRNRQW 487 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEE-EcchHHhccHHH-HH-HHHHhC------CCe-EEEEEECcch
Confidence 78888643 2333 44677777764 3566665 555 5544433 22 233333 455 4444433332
Q ss_pred CC--------CCC----C-CCC-chHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 021963 158 VG--------HGG----H-YHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (305)
Q Consensus 158 ~~--------~~g----~-~hs-~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~---~~~Pv~i 206 (305)
.. .++ . .+. .+...+.+.+ |..-+.-.+++|+...++.+++ .++|++|
T Consensus 488 g~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~li 552 (579)
T TIGR03457 488 GAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVI 552 (579)
T ss_pred HHHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEE
Confidence 10 011 1 111 1223444555 6677788999999999999997 4789988
No 234
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=61.69 E-value=18 Score=28.48 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
.....|.+|.+.|++.|++.+++|+.. .|+..+.+.+.++..+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 456788999999999999999999965 7888888888877664
No 235
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=61.65 E-value=41 Score=30.31 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCceEEee-eCCcEEEEEeChhHHHHHHHHHHHHhcC--CCeEEEE-ecccc-CCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 229 LSEAEVIR-EGSDITLVGWGAQLSIMEQACLDAEKEG--ISCELID-LKTLI-PWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 229 ~gk~~~~~-~g~dv~Iia~G~~~~~aleAa~~L~~~G--i~~~vI~-~~~i~-P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
+|+..... .+..+++|+-|+........++++.++| .++.++- .++-+ .+..+.+.+...+ ....++++++.
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~ 173 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWK 173 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCC
Confidence 44444333 3445999999999999999999998888 5555554 33322 2334555454443 56667776655
No 236
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=61.21 E-value=32 Score=35.25 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCC-CeEEEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEc-CC-cCCCC-----------C-
Q 021963 97 GIVGFAIGLAAMG-NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PY-GAVGH-----------G- 161 (305)
Q Consensus 97 ~~v~~AaGlA~~G-~~p~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~-~~-g~~~~-----------~- 161 (305)
..+++|.|++..+ .+++..+-=++|..-....|+|.+ +++ .++ .+++.. +. .-+|+ +
T Consensus 432 ssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV-~n~------~~~-~~vvLdN~~tAMTGgQp~pg~~~~~~g~ 503 (640)
T COG4231 432 SSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAV-YNK------ANI-LVVVLDNRTTAMTGGQPHPGTGVAAEGT 503 (640)
T ss_pred chhhhccccccccCCceEEEeccccccccCcHHHHHHH-hcC------CCe-EEEEEeccchhccCCCCCCCcccccCCC
Confidence 5578888888664 445544323336666777788755 333 344 344332 10 00111 0
Q ss_pred -CCCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEecccc
Q 021963 162 -GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKW 211 (305)
Q Consensus 162 -g~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~ 211 (305)
.+.+.++.+.=...+--+.++.|-|-.++...++.+++..+|.+|...+.
T Consensus 504 ~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak~~ 554 (640)
T COG4231 504 KSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAKRE 554 (640)
T ss_pred ccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEcCc
Confidence 12234455433344556777889999999999999999999999975543
No 237
>PRK12474 hypothetical protein; Provisional
Probab=60.86 E-value=1.5e+02 Score=29.65 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHH-HHHHHHHHHHhCC-CeEEEEecccc--h
Q 021963 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--Y 121 (305)
Q Consensus 46 ~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F 121 (305)
+...|.+.+.+| .+ +..|.+....+ ....|.-+. |.+|+..+-.=. ..+..|.|++++- -++++++ -++ |
T Consensus 346 ~~~~l~~~l~~d-~i--v~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i-~GDG~f 419 (518)
T PRK12474 346 VAQLIAHRTPDQ-AI--YADEALTSGLF-FDMSYDRAR-PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCP-QGDGGA 419 (518)
T ss_pred HHHHHHHHCCCC-eE--EEECCCcCHHH-HHHhhcccC-CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEE-EcCchh
Confidence 555666555433 33 34454421112 112232244 778886532111 2456677777762 3556665 455 4
Q ss_pred HHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC---------C--CCCC-------CC--chHHHHHccCCCcEE
Q 021963 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------H--GGHY-------HS--QSPEAFFCHVPGLKV 181 (305)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~---------~--~g~~-------hs--~~d~a~~~~iP~l~V 181 (305)
.+-..| +- -+...+ +|+ .+|+...++... . .+.. +. .+...+.+.+ |..-
T Consensus 420 ~m~~qE-L~-Ta~r~~------lpv-~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~ 489 (518)
T PRK12474 420 AYTMQA-LW-TMAREN------LDV-TVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEA 489 (518)
T ss_pred cchHHH-HH-HHHHHC------CCc-EEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeE
Confidence 444333 22 233333 566 555444333210 0 0000 10 1122344555 6677
Q ss_pred EeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 182 ~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
..-.+++|+...++++++.++|++|
T Consensus 490 ~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 490 SRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred EEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 7888999999999999999999988
No 238
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=60.31 E-value=17 Score=25.58 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=37.1
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc-----cCcEEEEeCCcccc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLPRSSGYWRF 303 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~-----~~~vvvvEe~~~~~ 303 (305)
++|.+. ..-..|.+|.+.|++.|++.+.+|+..- .+...+..+. +-..|+++....++
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~----~~~~~~~~~~~~~~~~vP~v~i~g~~igg 64 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD----PALREEMINRSGGRRTVPQIFIGDVHIGG 64 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHhCCCCccCEEEECCEEEeC
Confidence 444443 4568899999999999999999998753 3333332221 23456677665544
No 239
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=60.00 E-value=15 Score=29.49 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred eChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEE
Q 021963 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPR 296 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvv 296 (305)
+|++-..|.+.++.|++.|+++.++++.... .. + +.+.....++++
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~---~~-~-~~~~~~~~~i~~ 52 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFD---DS-P-SDLSEYDLLIFG 52 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSC---HH-H-HHHCTTSEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhh---hh-h-hhhhhhceeeEe
Confidence 4666677777888888889999999987764 33 2 334444444443
No 240
>PRK07064 hypothetical protein; Provisional
Probab=59.34 E-value=66 Score=32.24 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=60.7
Q ss_pred CCcEEecch-hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC--
Q 021963 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-- 158 (305)
Q Consensus 85 p~r~~~~gI-aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~-- 158 (305)
|.+++..+- .=-..++.|.|++++. -++++++ -++ |.+-..| +.. +...+ +|+ .+|+...++..
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i-~GDGsf~m~~~e-L~T-a~~~~------lpv-~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGL-VGDGGLMLNLGE-LAT-AVQEN------ANM-VIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEE-EcchHhhhhHHH-HHH-HHHhC------CCe-EEEEEeCChhHHH
Confidence 566664321 1112446777777764 4566665 555 4433322 322 33333 455 44444333321
Q ss_pred --------CCC--C-CCCCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 --------GHG--G-HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 --------~~~--g-~~hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
+.. + ..|..+-..+.+.+ |..-....+++|+...++.+++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLV 523 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 000 0 01122223444444 66777889999999999999999999999
No 241
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=58.69 E-value=33 Score=29.91 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=42.1
Q ss_pred CcEEEEEeChhH----HHHHHHHHHHHhc---CCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 239 SDITLVGWGAQL----SIMEQACLDAEKE---GISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 239 ~dv~Iia~G~~~----~~aleAa~~L~~~---Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
.+++|+++|+.. .....+++.|++. .-.++++|..+.- . .+...+.+.+++|+|+--
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g---~-~ll~~i~~~d~vIiVDAv 67 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQG---L-NLLGYVESASHLLILDAI 67 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCH---H-HHHHHHcCCCEEEEEECC
Confidence 468999999977 3566788888654 2358999999963 2 344667788999999853
No 242
>PRK10329 glutaredoxin-like protein; Provisional
Probab=58.48 E-value=53 Score=24.06 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=37.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-c--cCcEEEEeCCccccC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-K--TGRLLPRSSGYWRFW 304 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-~--~~~vvvvEe~~~~~~ 304 (305)
++|.+. ..-..|..+.+.|++.||..+.+|+.. |.+.....-. . +=-++++.+..+.||
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf 64 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGF 64 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecC
Confidence 455443 445788889999999999999999985 3333222211 1 224566776666665
No 243
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=58.07 E-value=90 Score=31.56 Aligned_cols=111 Identities=11% Similarity=0.037 Sum_probs=63.1
Q ss_pred CCcEEecch-h-HHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCC-
Q 021963 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (305)
Q Consensus 85 p~r~~~~gI-a-E~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~- 158 (305)
|.+|+..+- . =-..+..|.|++++. -++++++ -++ |++.+.| +. -+...+ +|+ .+|+...++..
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~i-~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDL-DGDGSFLMTGTN-LA-TAVDEH------IPV-ISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEE-EccchHhcchHH-HH-HHHHhC------CCe-EEEEEECCchHH
Confidence 678876421 1 012346777777764 3566665 455 5544433 22 233333 455 44444433321
Q ss_pred -C------CCCCC------CCchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 159 -G------HGGHY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 159 -~------~~g~~------hs~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
. .++.. +..+..++.+++ |..-+...+++|+...+.+++..++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 540 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVI 540 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 11111 112223455555 67778889999999999999999999998
No 244
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=57.88 E-value=35 Score=28.02 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=37.8
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCC--CeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 241 ITLVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 241 v~Iia~G~~~----~~aleAa~~L~~~Gi--~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++|+++|+.. .....++++|++... +++++|..+.- .+. ...+.+++++|+|+--
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l-~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEV-MFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHH-HHHhcCCCEEEEEEeC
Confidence 3678888765 356677888876543 48899998862 333 3556688899998863
No 245
>PRK05899 transketolase; Reviewed
Probab=57.80 E-value=1.4e+02 Score=30.82 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=31.8
Q ss_pred hHH-HHHccCCCcEEEeeC--CHHHHHHHHHHhHhCCCCEEEecc
Q 021963 168 SPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRDPNPVVFFEP 209 (305)
Q Consensus 168 ~d~-a~~~~iP~l~V~~P~--d~~e~~~~l~~a~~~~~Pv~i~~~ 209 (305)
.|+ ..++++ |+.++.-. |.+++..+++++.+.++|++|...
T Consensus 203 ~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~ 246 (624)
T PRK05899 203 EDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAK 246 (624)
T ss_pred ccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 344 456666 77777766 899999999999888899999543
No 246
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=57.20 E-value=53 Score=25.06 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=42.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-----ccCcEEEEeCCcccc
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-----KTGRLLPRSSGYWRF 303 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-----~~~~vvvvEe~~~~~ 303 (305)
..+++|.+. +.-+.|.+|.+.|++.|++..++|+.. .|-. ..+++.+. .+=..|++.....+|
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~-~~~~~~l~~~tg~~tvP~Vfi~g~~iGG 74 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAG-KDIENALSRLGCSPAVPAVFVGGKLVGG 74 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccH-HHHHHHHHHhcCCCCcCeEEECCEEEcC
Confidence 356777776 567889999999999999999999985 2322 23334333 233455666655554
No 247
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=57.07 E-value=2e+02 Score=29.14 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.9
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHhH--hCCCCEEE
Q 021963 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCI--RDPNPVVF 206 (305)
Q Consensus 171 a~~~~iP~l~V~~P~d~~e~~~~l~~a~--~~~~Pv~i 206 (305)
.+.+++ |..-..-.+.+|+...+++++ ..++|++|
T Consensus 491 ~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~li 527 (575)
T TIGR02720 491 KIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLI 527 (575)
T ss_pred HHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 344555 566667789999999999999 77899988
No 248
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=56.39 E-value=29 Score=28.09 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
.....|.+|.+.|++.||+.+.+|+.. .|.+.+.+.+.++..
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 456789999999999999999999865 788888888887765
No 249
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=56.20 E-value=60 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.234 Sum_probs=35.4
Q ss_pred eChhHHHHHHHHHHHHh-cCCCeEEEEeccccCCCHHHH---------------HHHHhccCcEEEEeCCcc
Q 021963 246 WGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETV---------------EASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~-~Gi~~~vI~~~~i~P~d~~~i---------------~~~~~~~~~vvvvEe~~~ 301 (305)
+|.+-..|..+++.+++ .|+++++++++...| .+.. .+.+...+.|++.=..|.
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~ 81 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF 81 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC
Confidence 45566777778888887 899999999975433 2111 344566677776554443
No 250
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=56.02 E-value=61 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=30.0
Q ss_pred hHH-HHHccCCCcEEEee---CCHHHHHHHHHHhHhC-CCCEEEeccccccc
Q 021963 168 SPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSCIRD-PNPVVFFEPKWLYR 214 (305)
Q Consensus 168 ~d~-a~~~~iP~l~V~~P---~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~ 214 (305)
+|+ .-+++. |+.|+.- -|.+++..++.++-.. ++|++|......++
T Consensus 196 ~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~ 246 (332)
T PF00456_consen 196 EDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGK 246 (332)
T ss_dssp SHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTT
T ss_pred hHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEec
Confidence 454 446666 8888887 5777777788877765 89999966554433
No 251
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=56.01 E-value=51 Score=31.18 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=47.1
Q ss_pred EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc-CcEEEEeCCc
Q 021963 234 VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-GRLLPRSSGY 300 (305)
Q Consensus 234 ~~~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~-~~vvvvEe~~ 300 (305)
++.+|+.++++.+|.-..++ +|.++..|.+|.+|-...=.-.+.|.|.+.+..+ .++|+|-.+.
T Consensus 88 ~lePgd~vLv~~~G~wg~ra---~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgd 152 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQRA---ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGD 152 (385)
T ss_pred hcCCCCeEEEEEechHHHHH---HHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecC
Confidence 45578899999999977665 4555556999999966666668889998877765 4666665543
No 252
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=55.63 E-value=1.3e+02 Score=30.56 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCcEEecch-hHH-HHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI-aE~-~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- .=. ..+..|.|++++. -+|++.+ .++ |++-..| +.. +...+ +|+ .+|+...++...
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i-~GDG~f~~~~~e-l~T-a~~~~------lpv-~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGF-AGDGAWGISMNE-VMT-AVRHN------WPV-TAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEE-EcCchHhccHHH-HHH-HHHhC------CCe-EEEEEeCchhHH
Confidence 778886431 111 2566777877774 4676665 555 5444433 332 33333 455 444443333210
Q ss_pred --------CC----CCCC-CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhC---CCCEEE
Q 021963 160 --------HG----GHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (305)
Q Consensus 160 --------~~----g~~h-s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~---~~Pv~i 206 (305)
.+ +... ..-|. .+.+.+ |..-+.-.+++|+...++.+++. ++|++|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lI 557 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVI 557 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEE
Confidence 01 1111 11133 344444 55556668999999999999985 489988
No 253
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=55.32 E-value=36 Score=27.68 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=35.9
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
|+++|+.. .....++++|++ -++++++..+. -..+...+.+++++|+|+--
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~--~~v~vi~~g~~----~~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQ--CGAPVFDGGLD----GFGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhh--CCCEEEECCCc----HHHHHHHHcCCCEEEEEEee
Confidence 67777765 356677888876 46889998882 23344556788899998864
No 254
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=53.45 E-value=64 Score=27.06 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=40.3
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhc-C--CCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 240 DITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 240 dv~Iia~G~~~----~~aleAa~~L~~~-G--i~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
+++|+++|+.. .....+++.|++. + -+++++|..+.- . .+...+..++++|+|+--
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~-~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---M-ELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---H-HHHHHHhCCCEEEEEEec
Confidence 47899999876 3567788888754 3 358899988853 2 334556778899998864
No 255
>PLN02790 transketolase
Probab=52.97 E-value=1.8e+02 Score=30.33 Aligned_cols=80 Identities=5% Similarity=-0.061 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-CchHH-HHHccCCCcEEEee----CCHHHHHHHHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPE-AFFCHVPGLKVVIP----RSPRQAKGLLLS 196 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h-s~~d~-a~~~~iP~l~V~~P----~d~~e~~~~l~~ 196 (305)
..++|-+.. ++.++ ++. -+++....+..-.+.+.- ..+|+ ..++++ |+.++.+ .|.+++..+++.
T Consensus 152 G~~~EAl~~-A~~~~------L~n-li~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 152 GISNEAASL-AGHWG------LGK-LIVLYDDNHISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred hHHHHHHHH-HHHhC------CCC-EEEEEecCCccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHH
Confidence 457777653 44444 332 233444444322221111 23454 456777 9999998 467788888888
Q ss_pred hHh-CCCCEEEecccc
Q 021963 197 CIR-DPNPVVFFEPKW 211 (305)
Q Consensus 197 a~~-~~~Pv~i~~~~~ 211 (305)
+.+ .++|++|.....
T Consensus 223 a~~~~~~P~lI~~~T~ 238 (654)
T PLN02790 223 AKAVTDKPTLIKVTTT 238 (654)
T ss_pred HHhcCCCeEEEEEEEe
Confidence 876 589999964433
No 256
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=52.59 E-value=45 Score=27.25 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=36.1
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCC--CeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~Gi--~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
|+++|+.. .....+++.|+++.. .++++|..+. ..+.+.+.++..+++|+|+--
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 56677655 356667788876644 3888988875 233343556678899998863
No 257
>PRK10638 glutaredoxin 3; Provisional
Probab=52.30 E-value=25 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+++|.+. .....|.+|.+.|++.|++.+++|+..
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~ 36 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDG 36 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCC
Confidence 3555553 345789999999999999999999853
No 258
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.20 E-value=45 Score=31.52 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=48.7
Q ss_pred eCCcEEEEEeCh-hHHHHHHHHHHHHhcCCC-eEEEEeccccCCCHHH-----HHHHHhccCcEEEEeCCccc
Q 021963 237 EGSDITLVGWGA-QLSIMEQACLDAEKEGIS-CELIDLKTLIPWDKET-----VEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 237 ~g~dv~Iia~G~-~~~~aleAa~~L~~~Gi~-~~vI~~~~i~P~d~~~-----i~~~~~~~~~vvvvEe~~~~ 302 (305)
.++ =+|+++|. ...+..+|++.++++|.. +.++++.+.+|-|.+. +.++..+....|=+-+|..+
T Consensus 146 ~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g 217 (347)
T COG2089 146 KGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLG 217 (347)
T ss_pred cCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccc
Confidence 444 56889986 468899999999988775 9999999999988775 34444556666667777655
No 259
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=51.69 E-value=53 Score=26.56 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=37.5
Q ss_pred EEEeChhH----HHHHHHHHHHHhcC--CCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKEG--ISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~G--i~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
|+++|+.. .....++++|++.. -+++++|..+. | ..+...+...+++|+|+--
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~---~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-G---LELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-H---HHHHHHHhcCCeEEEEECc
Confidence 67777765 35667788887763 47899999986 2 2344666778899998864
No 260
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=50.02 E-value=1e+02 Score=26.41 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHhHhCCCCEEEe--ccccccccCccCCCCCCCcccCCceE-------------EeeeCCcEEEEEeChhHHHHHH
Q 021963 191 KGLLLSCIRDPNPVVFF--EPKWLYRLSVEEVPEDDYMLPLSEAE-------------VIREGSDITLVGWGAQLSIMEQ 255 (305)
Q Consensus 191 ~~~l~~a~~~~~Pv~i~--~~~~l~~~~~~~~~~~~~~~~~gk~~-------------~~~~g~dv~Iia~G~~~~~ale 255 (305)
..+++.+--.+-|+++- ||++|++. ++++..+.....++|.. -+..|+ +++=+|...+.|.+
T Consensus 42 ~rLl~aaril~vP~ivTEqYP~gLG~T-V~eLd~~g~~~~~~KT~FSM~~p~v~~s~~~i~~~k--~VvL~GiEthvCv~ 118 (201)
T KOG4044|consen 42 TRLLAAARILQVPVIVTEQYPEGLGKT-VPELDIEGLKLNLSKTKFSMVLPPVEDSLKDIFGGK--TVVLFGIETHVCVL 118 (201)
T ss_pred HHHHHhhhhhCCcEEeecccccccccc-chhhchhhhcccccccceeeeCchHHHHHHhccCCC--eEEEEecchheehH
Confidence 34554444468899994 78888753 33332111111111111 112344 45556676666654
Q ss_pred --HHHHHHhcCCCeEEEEecccc--CCCHHHHHHHHhccCcEEEEeC
Q 021963 256 --ACLDAEKEGISCELIDLKTLI--PWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 256 --Aa~~L~~~Gi~~~vI~~~~i~--P~d~~~i~~~~~~~~~vvvvEe 298 (305)
|.+.| ++|+++-|+-=-+-. --|...-.+-.+..+.+++-.|
T Consensus 119 qTa~dLl-~rgl~VhvVaDacSSRs~~DR~~Al~r~rq~G~~lstsE 164 (201)
T KOG4044|consen 119 QTALDLL-ERGLNVHVVADACSSRSNQDRDLALERMRQAGANLSTSE 164 (201)
T ss_pred HHHHHHH-hCCceEEEEeehhccccchhHHHHHHHHHhcCCcccchH
Confidence 55544 669999776433322 2444443444555566554433
No 261
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=49.05 E-value=1.2e+02 Score=31.04 Aligned_cols=162 Identities=16% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhcCCCEEEEecccC-CC-----cccccchhhHh-----hhCCCcE------EecchhH
Q 021963 33 GVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FG-----GVFRCTTGLAD-----RFGKSRV------FNTPLCE 95 (305)
Q Consensus 33 ~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~-~g-----~~~~~~~~~~~-----~~gp~r~------~~~gIaE 95 (305)
+.+.+..++..+.+. +|......++|-++++..-+ +. |....+..|++ -| |++. +.+|.-
T Consensus 43 ~gH~g~~ls~~~i~~-~L~~~~~~~rDr~ils~GH~~y~~~~~~g~~~~l~~~~~~~s~~g~-p~~~~~~~~~~~~G~l- 119 (580)
T PRK05444 43 GGHLGSNLGVVELTV-ALHYVFDTPKDRIIWDVGHQAYPHKILTGRRDRFDTLRQKGGLSGF-PKRSESEYDTFGAGHS- 119 (580)
T ss_pred CCCcCCCccHHHHHH-HHHHhcCCCCccEEEeccHHHHHHHHHhCcHHHhcCcccCCCCCCC-CCCCCCCCeeECCChH-
Confidence 344455677766654 34434445667777775432 10 10000111211 24 5542 233321
Q ss_pred HHHHHHHHHHHhCC------CeEEEEecccchH---HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC-
Q 021963 96 QGIVGFAIGLAAMG------NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH- 165 (305)
Q Consensus 96 ~~~v~~AaGlA~~G------~~p~~~~~~~~F~---~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h- 165 (305)
-+.+++|.|+|++- -++++++ .++.- ...++.+.. ++..+ .|+ . ++....+.. -++.+.
T Consensus 120 G~gl~~AvG~A~a~~~~~~~~~~v~~i-~GDG~l~eG~~~Eal~~-A~~~~------~nl-i-~IvdnN~~~-i~~~~~~ 188 (580)
T PRK05444 120 STSISAALGMAKARDLKGGEDRKVVAV-IGDGALTGGMAFEALNN-AGDLK------SDL-I-VILNDNEMS-ISPNVGA 188 (580)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEE-EcccccccCHHHHHHHH-HHhhC------CCE-E-EEEECCCCc-CCCcchh
Confidence 23456777777642 2456665 55532 255666553 33332 233 2 223333322 122111
Q ss_pred -----CchHH-HHHccCCCcEEEe---eCCHHHHHHHHHHhHhCCCCEEEecc
Q 021963 166 -----SQSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLSCIRDPNPVVFFEP 209 (305)
Q Consensus 166 -----s~~d~-a~~~~iP~l~V~~---P~d~~e~~~~l~~a~~~~~Pv~i~~~ 209 (305)
...++ ..+++. |+.++. ..|.+++...++++.+.++|++|...
T Consensus 189 ~~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~ 240 (580)
T PRK05444 189 LSNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVV 240 (580)
T ss_pred hhhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11222 244544 555554 47899999999988888899999543
No 262
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=48.97 E-value=66 Score=26.24 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=36.3
Q ss_pred EEEeChhH----HHHHHHHHHHHhcC---CCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKEG---ISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~G---i~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
|+++|+.. .....++++|++.. -.++++|..+.- ..+...+.+++++|+|+--
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEcc
Confidence 67777765 34556777787653 468899998862 2344566788899998864
No 263
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=48.83 E-value=46 Score=27.45 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=37.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc--CcEEEEeC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLPRSS 298 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~--~~vvvvEe 298 (305)
++|++=|..-..+.++++.|++.|+.+-+|-+.. .+.+.|.+++.+. .+++.|.+
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcCC
Confidence 4555666554456778899999899877776654 4677888877764 36666543
No 264
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=47.99 E-value=47 Score=27.67 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=37.8
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhcCC-CeEEEEeccccCCCHHHHHHHHh--ccCcEEEEeC
Q 021963 240 DITLVGWGAQL----SIMEQACLDAEKEGI-SCELIDLKTLIPWDKETVEASVR--KTGRLLPRSS 298 (305)
Q Consensus 240 dv~Iia~G~~~----~~aleAa~~L~~~Gi-~~~vI~~~~i~P~d~~~i~~~~~--~~~~vvvvEe 298 (305)
+++|+++|+.. .....++++|++... +++++|..+ -|++.- ..+. +.+++|+|+-
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~---~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDI---VAIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHH---HHHHhcCCCEEEEEEC
Confidence 36789999876 456677888876532 588999999 454432 3333 4578998885
No 265
>PLN02409 serine--glyoxylate aminotransaminase
Probab=47.83 E-value=66 Score=30.86 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=25.4
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~ 288 (305)
++|+++++...|....... +.++..|.++..+....=..+|.+.|.+.++
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~ 131 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLR 131 (401)
T ss_pred CCCCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHh
Confidence 4555555555555433222 2233346666666654323356666666555
No 266
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=47.75 E-value=85 Score=31.84 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=76.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecch--hHHHHHHHHHHHHhCC-CeEEEE
Q 021963 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAE 115 (305)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~ 115 (305)
.++... +.+.|.+.+..+ .+++ .|.. + ....+.-.- |.+|+..+- +=-..+++|.|++++. -+++++
T Consensus 384 ~i~~~~-~~~~l~~~l~~~-~~vv--~~~~----~-~~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~ 453 (569)
T PRK08327 384 PITPAY-LSYCLGEVADEY-DAIV--TEYP----F-VPRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIA 453 (569)
T ss_pred CcCHHH-HHHHHHHhcCcc-ceEE--eccH----H-HHHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEE
Confidence 355433 556666666644 4444 3422 1 122333233 667776531 2234567777777763 356666
Q ss_pred ecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC---------CCC------CC----C-CchHH-HH
Q 021963 116 IQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------HGG------HY----H-SQSPE-AF 172 (305)
Q Consensus 116 ~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~---------~~g------~~----h-s~~d~-a~ 172 (305)
+ .++ |.+-..++...-+...+ +|+ .+|+...++... ..+ .. . ..-|. .+
T Consensus 454 i-~GDG~f~~~~~e~~l~ta~~~~------l~~-~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 525 (569)
T PRK08327 454 T-VGDGSFIFGVPEAAHWVAERYG------LPV-LVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKI 525 (569)
T ss_pred E-ecCcceeecCcHHHHHHHHHhC------CCE-EEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHH
Confidence 5 555 44444444333344444 455 444443322210 000 00 0 11233 34
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEE
Q 021963 173 FCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (305)
Q Consensus 173 ~~~iP~l~V~~P~d~~e~~~~l~~a~~~----~~Pv~i 206 (305)
..++ |...+.-.+++|+...++++++. ++|++|
T Consensus 526 a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~li 562 (569)
T PRK08327 526 AEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVL 562 (569)
T ss_pred HHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 4443 33455556999999999999876 789998
No 267
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=47.73 E-value=55 Score=23.94 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=37.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh--ccCcEEEEeCC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR--KTGRLLPRSSG 299 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~--~~~~vvvvEe~ 299 (305)
++|.+. +.-..|..|.+.|.++|++...|++..-.+-..+...+... .+-..|++.+.
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 444443 33678899999999999999999998866523322223332 33356666664
No 268
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=47.20 E-value=2.1e+02 Score=28.78 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=24.4
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.-+.-.+.+|+...++++++.++|++|
T Consensus 496 ~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 496 ECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred ceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 366779999999999999999999999
No 269
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=46.90 E-value=45 Score=27.32 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCC--CeEEEEeccccCCCHHHHHHHHh--ccCcEEEEeC
Q 021963 241 ITLVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVR--KTGRLLPRSS 298 (305)
Q Consensus 241 v~Iia~G~~~----~~aleAa~~L~~~Gi--~~~vI~~~~i~P~d~~~i~~~~~--~~~~vvvvEe 298 (305)
++|+++|+.. .....++++|++... .+.++|..+. |++.. ..+. +.+++++|+-
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~---~~~~~~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFT---VAIRELRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHH---HHHHhcCCCEEEEEEC
Confidence 3678888766 345667788876532 4788998886 54432 2333 4688888886
No 270
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=46.74 E-value=16 Score=29.11 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.0
Q ss_pred eeCCcEEEEEeChhH-HHHHHHHHHHHhcCCCeEEEEecc
Q 021963 236 REGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~-~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.++.|++||++|... ..--+..+.|+++||.+++.|...
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 345689999999853 333345578888999999887543
No 271
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.67 E-value=70 Score=26.92 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=37.9
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHH--HHHhccC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVE--ASVRKTG 291 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~--~~~~~~~ 291 (305)
+++++.|.--.-++-+++.|.+.|+++.|+-+.-..+++.+.-. +.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 56778888899999999999999999999666665666665432 4455555
No 272
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=46.61 E-value=15 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=25.6
Q ss_pred eCCcEEEEEeChhHHH-HHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQLSI-MEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~-aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+..|++||++|..... -.+..+.|++.||.+++.|-+.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHH
Confidence 4679999999976433 3455678889999999887554
No 273
>PRK06756 flavodoxin; Provisional
Probab=46.45 E-value=68 Score=26.00 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=21.3
Q ss_pred eChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 246 WGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+|++-..|...++.|++.|+++.++|+..
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMD 40 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhc
Confidence 45555666666777877899999888754
No 274
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.10 E-value=93 Score=26.93 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=38.7
Q ss_pred EEEEEeChhH--HHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc-----CcEEEEeCC
Q 021963 241 ITLVGWGAQL--SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-----GRLLPRSSG 299 (305)
Q Consensus 241 v~Iia~G~~~--~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~-----~~vvvvEe~ 299 (305)
+++++++..- ....++++.|+++||.+.+|.+.+..+=. +.|+.+++.. .++++|-.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~-~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNT-EKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCH-HHHHHHHHHhcCCCCceEEEeCCC
Confidence 5666766333 34558889999999999999999874432 3444433322 577777654
No 275
>PLN02573 pyruvate decarboxylase
Probab=45.76 E-value=1.9e+02 Score=29.42 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC----CCCC---CCCc
Q 021963 98 IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----HGGH---YHSQ 167 (305)
Q Consensus 98 ~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~----~~g~---~hs~ 167 (305)
.+..|+|++++- -++++++ -++ |.+-+.| |. .++..+ +|+ .+|+...++... .+.. .+..
T Consensus 433 glpaaiGa~lA~p~r~vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpv-v~vV~NN~~yg~~~~~~~~~~~~~~~~ 502 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIAC-IGDGSFQVTAQD-VS-TMIRCG------QKS-IIFLINNGGYTIEVEIHDGPYNVIKNW 502 (578)
T ss_pred hhhHHHHHHHhCCCCceEEE-EeccHHHhHHHH-HH-HHHHcC------CCC-EEEEEeCCceeEEEeecccCccccCCC
Confidence 345666666652 3555554 445 5444433 33 244444 565 444443333210 1111 1111
Q ss_pred hHHHHHccCC---C-cEEEeeCCHHHHHHHHHHhHh--CCCCEEE
Q 021963 168 SPEAFFCHVP---G-LKVVIPRSPRQAKGLLLSCIR--DPNPVVF 206 (305)
Q Consensus 168 ~d~a~~~~iP---~-l~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 206 (305)
+..++.+.+. + +.-..-.+++|+...+++++. .++|++|
T Consensus 503 d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~li 547 (578)
T PLN02573 503 NYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFI 547 (578)
T ss_pred CHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2224445542 2 777888899999999999984 6899998
No 276
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=45.74 E-value=42 Score=32.48 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEE
Q 021963 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPR 296 (305)
Q Consensus 243 Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvv 296 (305)
||++-..=+.+++.++.|+.+|++|+.+.+..==-+|.+.|++.++....+|.|
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSi 147 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSI 147 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEE
Confidence 556666677888889999888999999998876678889998888765544443
No 277
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=45.64 E-value=37 Score=28.56 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=29.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCEL 269 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~v 269 (305)
.+.+++++++|-..+..+..++.|+++|.+|.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 678999999999999999999999999866544
No 278
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=45.08 E-value=61 Score=31.69 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=39.3
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-ccCcEEEEeCC
Q 021963 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLPRSSG 299 (305)
Q Consensus 239 ~dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvvEe~ 299 (305)
.++.|+..+. ....|++.++.|+++|+.+++ +... +++ .+.++..-+ +.+.++++.+.
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~~ 385 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGDN 385 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEech
Confidence 4678887675 467899999999999999987 4443 344 344543322 34678887653
No 279
>PRK10824 glutaredoxin-4; Provisional
Probab=44.84 E-value=34 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=31.6
Q ss_pred eCCcEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+..+|+|++-|+ ....|.+|.+.|.+.|++..++|+-.
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~ 54 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ 54 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC
Confidence 346789998884 67889999999999999999999854
No 280
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=44.16 E-value=52 Score=28.79 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=37.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc--CcEEEEeC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLPRSS 298 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~--~~vvvvEe 298 (305)
++|++-|.......++++.|++.|+.+-.|-+.. .|.+.|.+++... ++++.+++
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCC
Confidence 4566666554556677888888888877777665 5788887877543 35666654
No 281
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=43.58 E-value=51 Score=27.27 Aligned_cols=60 Identities=22% Similarity=0.140 Sum_probs=38.9
Q ss_pred CcEEEEEeChhH----HHHHHHHHHHHhcC----CCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 239 SDITLVGWGAQL----SIMEQACLDAEKEG----ISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 239 ~dv~Iia~G~~~----~~aleAa~~L~~~G----i~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++++|+++|+.. .....++++|++.+ -+++++|..+.-|-....+. .+.+.+++|+|+--
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 468899999876 35667888887432 24889988775332111111 24677899998863
No 282
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=43.02 E-value=37 Score=24.17 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc----cCcEEEEeCCccccC
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK----TGRLLPRSSGYWRFW 304 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~----~~~vvvvEe~~~~~~ 304 (305)
..-..|.+|.+.|++.|++.+.+|+.. |.+...+..+. +-..|++.....+++
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~----~~~~~~~~~~~~g~~~vP~i~i~g~~igg~ 63 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDG----DPALRDEMMQRSGRRTVPQIFIGDVHVGGC 63 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecC----CHHHHHHHHHHhCCCCcCEEEECCEEEcCh
Confidence 456789999999999999999999874 23333333221 224566776655553
No 283
>PRK08114 cystathionine beta-lyase; Provisional
Probab=42.82 E-value=57 Score=31.64 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=10.0
Q ss_pred CCHHHHHHHHhccC--cEEEEeCC
Q 021963 278 WDKETVEASVRKTG--RLLPRSSG 299 (305)
Q Consensus 278 ~d~~~i~~~~~~~~--~vvvvEe~ 299 (305)
.|-+.|.+.+++.+ .+++|+..
T Consensus 164 ~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 164 HDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred ecHHHHHHHHHHhCCCCEEEEECC
Confidence 34455555555442 34444433
No 284
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=42.80 E-value=52 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.-..|.+|.+.|++.|+..+.+|+..
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCC
Confidence 34788889999999999999999975
No 285
>PRK09739 hypothetical protein; Provisional
Probab=42.58 E-value=93 Score=26.69 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecccc--C------------------CCHHHHHHHHhccCcEEEEeCCcc
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLI--P------------------WDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~--P------------------~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
...+...++.+++.|.+++++|+.-.. | -+.+.+.+.+...+.||++=.-|+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~ 91 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWW 91 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhh
Confidence 444555667888889999999987642 1 112455667778888887655443
No 286
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=42.33 E-value=61 Score=26.56 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=36.2
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc--CcEEEEeC
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLPRSS 298 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~--~~vvvvEe 298 (305)
+++++-|.......+++..|++.|+.+-.|-+.. -|.+.|+..+... ++++.+++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEeccC
Confidence 4555656544444556667888888877776554 3888888877766 46666543
No 287
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=42.19 E-value=1.4e+02 Score=22.27 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=29.2
Q ss_pred EEEEEeChhHHHHHHH----HHHHHhc--CCCeEEEEeccccCCCHHHHHHHHhc-cCcEEEE
Q 021963 241 ITLVGWGAQLSIMEQA----CLDAEKE--GISCELIDLKTLIPWDKETVEASVRK-TGRLLPR 296 (305)
Q Consensus 241 v~Iia~G~~~~~aleA----a~~L~~~--Gi~~~vI~~~~i~P~d~~~i~~~~~~-~~~vvvv 296 (305)
++|++.|+....+.+. ++.|++. +..+.+--+..-.|--.+.+.+..+. .++|+++
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 5678888776544443 3344443 23333333333356666667665543 4566654
No 288
>PRK06703 flavodoxin; Provisional
Probab=42.15 E-value=44 Score=27.26 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
|++-..|...++.|++.|+++.+.++...
T Consensus 13 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 13 GNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 33444555555667777999999988664
No 289
>PRK05569 flavodoxin; Provisional
Probab=42.14 E-value=76 Score=25.32 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=19.7
Q ss_pred eChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 246 WGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
+|++-..|...++.+++.|.+++++++...
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 344555555566667667888888876554
No 290
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=41.78 E-value=1.7e+02 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEEe
Q 021963 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFF 207 (305)
Q Consensus 172 ~~~~iP~l~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~ 207 (305)
.--.||++.| .=.|...++...++|.+. .+|++|-
T Consensus 219 ~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE 257 (358)
T COG1071 219 AAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIE 257 (358)
T ss_pred hccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4447999988 889999999999999873 6899993
No 291
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=41.30 E-value=60 Score=29.37 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=50.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHH
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~ 259 (305)
.|+.|.||.-+..+-+ ..++|..+-++| .|..--|. -+|+.+++.++|.....+--|+|+
T Consensus 19 ~vilpGdP~R~~~iA~---lld~~~~va~~R-------------ef~~~~g~----~~g~~v~v~StGIGgPSaaIAvEE 78 (248)
T COG2820 19 LVILPGDPERVEKIAK---LLDNPVLVASNR-------------EFRTYTGT----YNGKPVTVCSTGIGGPSAAIAVEE 78 (248)
T ss_pred eEEecCCHHHHHHHHH---Hhccchhhhhcc-------------ceEEEEEE----EcCeEEEEEecCCCCchHHHHHHH
Confidence 3999999997765544 345666662221 12111122 247889999999998888889999
Q ss_pred HHhcCCCeEEEEeccc
Q 021963 260 AEKEGISCELIDLKTL 275 (305)
Q Consensus 260 L~~~Gi~~~vI~~~~i 275 (305)
|...|.++= |.+-|-
T Consensus 79 L~~lGa~tf-iRVGT~ 93 (248)
T COG2820 79 LARLGAKTF-IRVGTT 93 (248)
T ss_pred HHhcCCeEE-EEeecc
Confidence 998897753 666654
No 292
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=41.25 E-value=48 Score=27.94 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEe
Q 021963 253 MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRS 297 (305)
Q Consensus 253 aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvE 297 (305)
..++++.|++.|+.+-.|-+ ...|.+.|++.+.+.++++.+.
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~ 164 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVT 164 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecC
Confidence 44556677777876655655 4567777877777666766443
No 293
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=41.08 E-value=1.5e+02 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=17.8
Q ss_pred cCCCcEEEeeCCHHHH----HHHHHHhHhCCCCEEEe
Q 021963 175 HVPGLKVVIPRSPRQA----KGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 175 ~iP~l~V~~P~d~~e~----~~~l~~a~~~~~Pv~i~ 207 (305)
.+|...| .-.|..++ ..+++.+.+.++|++|-
T Consensus 207 G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe 242 (341)
T TIGR03181 207 GIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIE 242 (341)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3555543 33344433 44555555568999993
No 294
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=41.00 E-value=75 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC-cEEEEeC
Q 021963 253 MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG-RLLPRSS 298 (305)
Q Consensus 253 aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~-~vvvvEe 298 (305)
..++++.++++||.+.+|-+.. +.+.|++.++.++ +.+.+++
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 3456777888888888888863 3456777777774 6665554
No 295
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=40.90 E-value=50 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.0
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++..+|+|.+. ..-..|.+|.+.|++.|++.+.+|+..
T Consensus 5 ~~~~~V~ly~~-~~Cp~C~~ak~~L~~~gi~y~~idi~~ 42 (79)
T TIGR02190 5 RKPESVVVFTK-PGCPFCAKAKATLKEKGYDFEEIPLGN 42 (79)
T ss_pred CCCCCEEEEEC-CCCHhHHHHHHHHHHcCCCcEEEECCC
Confidence 34456766654 667889999999999999999999754
No 296
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=40.42 E-value=1.4e+02 Score=22.65 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=32.0
Q ss_pred EEEEEeChhHHHHHHHHHHH----HhcCCCeEEEEecc---ccCCCHHHHHHHHhccCcEEEEe
Q 021963 241 ITLVGWGAQLSIMEQACLDA----EKEGISCELIDLKT---LIPWDKETVEASVRKTGRLLPRS 297 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L----~~~Gi~~~vI~~~~---i~P~d~~~i~~~~~~~~~vvvvE 297 (305)
+.|+++|+......-|++.| ++.|+++.|---.. ..+++.+.+ ...+.|+++=
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i----~~Ad~vi~~~ 61 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDI----AEADAVILAA 61 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHH----hhCCEEEEec
Confidence 46788887665555555544 45699887664444 667776554 3445555543
No 297
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=39.95 E-value=1.3e+02 Score=22.22 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=25.2
Q ss_pred EEEEEeChhHH-----HHHHHHHHHHhc--CCCeEEEEeccccCCCHHHHHHHHhc-cCcEEEE
Q 021963 241 ITLVGWGAQLS-----IMEQACLDAEKE--GISCELIDLKTLIPWDKETVEASVRK-TGRLLPR 296 (305)
Q Consensus 241 v~Iia~G~~~~-----~aleAa~~L~~~--Gi~~~vI~~~~i~P~d~~~i~~~~~~-~~~vvvv 296 (305)
+++++.|+... ...+.++.|++. +..+.+--.....|.-.+.+.+..+. .++|+++
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 45566665542 222333444433 23343333333366656666554332 3455543
No 298
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.93 E-value=42 Score=24.07 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=24.0
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++||+.|. .++|.+..|.+.|.++.+|+..-
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccc
Confidence 67788776 45567777888899999998765
No 299
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.72 E-value=1.3e+02 Score=28.57 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=42.6
Q ss_pred CCcEEEEEeCh-hHHHHHHHHHHHHhcCCC---eEEEEeccccCCCHHH-----HHHHHhccCcEEEEeCCccc
Q 021963 238 GSDITLVGWGA-QLSIMEQACLDAEKEGIS---CELIDLKTLIPWDKET-----VEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 238 g~dv~Iia~G~-~~~~aleAa~~L~~~Gi~---~~vI~~~~i~P~d~~~-----i~~~~~~~~~vvvvEe~~~~ 302 (305)
|+. +|+++|. ...+..+|++.+++.|.+ +.++++.+-.|-+.+. |..+-+.++..|-.-+|..+
T Consensus 133 gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G 205 (329)
T TIGR03569 133 GKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTLG 205 (329)
T ss_pred CCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCcc
Confidence 444 6778885 568888999999888874 8888888887866553 33222345545555666543
No 300
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=39.08 E-value=1.1e+02 Score=26.51 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=39.5
Q ss_pred eChhHHHHHHHHHHHHhcCCCeEEEEecccc--C----------------CC-HHHHHHHHhccCcEEEEeCCc
Q 021963 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLI--P----------------WD-KETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~--P----------------~d-~~~i~~~~~~~~~vvvvEe~~ 300 (305)
+|.+...+.++++.+++.|.++++++++-.+ | -| .+.|.+.+...+.||+.-.-|
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVY 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCee
Confidence 5888888888899999899999999998651 2 12 355556666677777654433
No 301
>PRK00170 azoreductase; Reviewed
Probab=38.83 E-value=1.5e+02 Score=25.15 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEecccc-C-CC------------------------HHHHHHHHhccCcEEEEeCCcc
Q 021963 250 LSIMEQACLDAEKE--GISCELIDLKTLI-P-WD------------------------KETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 250 ~~~aleAa~~L~~~--Gi~~~vI~~~~i~-P-~d------------------------~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
...+..+++.|+++ |.+++++|+.... | ++ .+.+.+.+...+.||++=.-|+
T Consensus 19 ~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~ 98 (201)
T PRK00170 19 MQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYN 98 (201)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecccc
Confidence 34555667788887 8999999997543 3 22 1234455667788887766554
No 302
>PRK05568 flavodoxin; Provisional
Probab=38.23 E-value=75 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
|.+-..|...++.+++.|++++++++....
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 334444444555666678999999987654
No 303
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=38.16 E-value=84 Score=29.01 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=35.2
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc----------ccCCCHHHHHHHHhccCcEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT----------LIPWDKETVEASVRKTGRLL 294 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~----------i~P~d~~~i~~~~~~~~~vv 294 (305)
.|+.+.|+++|.+... +++.|...|.++.+++-.. ..|++.+.+.+.+++.+-|+
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 4678999999996554 4556666788888887542 23444455555565555333
No 304
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=37.71 E-value=90 Score=28.78 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 264 GISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 264 Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++.+=++| ++=.+++.+.+.++++...+|+-+=+.
T Consensus 130 ~~pvilYn-~~g~~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 130 DLGVIVYQ-RDNAVLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 56666777 444577777777766556677666543
No 305
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.58 E-value=98 Score=24.77 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=29.7
Q ss_pred EEEEEeChhHHHHHHHHHHH----HhcCCCeEEEEeccc--------------cCCCHHHHHHHHh-ccCcEEEE
Q 021963 241 ITLVGWGAQLSIMEQACLDA----EKEGISCELIDLKTL--------------IPWDKETVEASVR-KTGRLLPR 296 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L----~~~Gi~~~vI~~~~i--------------~P~d~~~i~~~~~-~~~~vvvv 296 (305)
+++++.|+....+.+..+.+ ++.--+.. |..-++ .|-..+.|.++.. .+++|+|+
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~~-V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~ 76 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYE-VRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQ 76 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCe-EEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 67888888776665554433 32211112 222222 4666777776655 35677665
No 306
>PTZ00089 transketolase; Provisional
Probab=37.43 E-value=4.6e+02 Score=27.28 Aligned_cols=79 Identities=6% Similarity=-0.029 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC--CchHH-HHHccCCCcEEEeeC----CHHHHHHHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIPR----SPRQAKGLLL 195 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h--s~~d~-a~~~~iP~l~V~~P~----d~~e~~~~l~ 195 (305)
..++|-+. .++.++ ++. -++++...+..- ++.++ ..+++ ..++++ |+.++.+. |..++..+++
T Consensus 163 G~~~EAl~-~A~~~~------L~n-Li~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~ 232 (661)
T PTZ00089 163 GVSQEALS-LAGHLG------LEK-LIVLYDDNKITI-DGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIE 232 (661)
T ss_pred HHHHHHHH-HHHHhC------CCC-EEEEEECCCccc-ccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Confidence 45777765 344444 332 234444444322 22222 13444 567777 99999984 6677777787
Q ss_pred HhHhC-CCCEEEecccc
Q 021963 196 SCIRD-PNPVVFFEPKW 211 (305)
Q Consensus 196 ~a~~~-~~Pv~i~~~~~ 211 (305)
.+.+. ++|++|.....
T Consensus 233 ~a~~~~~~P~~I~~~T~ 249 (661)
T PTZ00089 233 EAKKSKGKPKLIIVKTT 249 (661)
T ss_pred HHHhcCCCcEEEEEEee
Confidence 77765 68999965433
No 307
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=36.83 E-value=24 Score=27.67 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=26.3
Q ss_pred CcEEEEEeChhHH-HHHHHHHHHHhcCCCeEEEEec
Q 021963 239 SDITLVGWGAQLS-IMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 239 ~dv~Iia~G~~~~-~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.|++||++|.... .--+..+.|++.||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 6899999998542 2334567888899999988765
No 308
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=36.55 E-value=2.5e+02 Score=28.42 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=60.1
Q ss_pred CCcEEecch--hHHHHHHHHHHHHhCC-CeEEEEecccc--hHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCC
Q 021963 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (305)
Q Consensus 85 p~r~~~~gI--aE~~~v~~AaGlA~~G-~~p~~~~~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~ 159 (305)
|.+|+..+- +=-..+..|.|++++. -++++.+ .++ |++...| +. -+...+ +|+ .+|+...++...
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~i-~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILF-VGDGGFQMTNQE-LA-ILNIYK------VPI-KVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEE-EcchhhhccHHH-HH-HHHHhC------CCe-EEEEEeCCCchH
Confidence 778886531 1123556667766663 3566665 555 5544433 22 233333 455 445444333210
Q ss_pred --------CCC--CCC---CchHH-HHHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 160 --------HGG--HYH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 160 --------~~g--~~h---s~~d~-a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
.++ ... ..-|. .+.+.+ |..-+.-.+++|+..++. ++..++|++|
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lI 536 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLI 536 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEE
Confidence 011 100 11233 344555 777788899999999997 4667899999
No 309
>PRK10537 voltage-gated potassium channel; Provisional
Probab=36.41 E-value=1e+02 Score=29.94 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
.+.++|+++|..... ++++|+++|+++-||+.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~ 271 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVP 271 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEEC
Confidence 357899999987654 56678888999999984
No 310
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=36.21 E-value=1.1e+02 Score=26.26 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccCC----------CHHHHHHHHhccCcEEEEeCCccc
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLIPW----------DKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~P~----------d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
...+..+++.|+++|.+++++|+..+.+- +.+.+.+.++..+.+|++-.-|.+
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~ 79 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKA 79 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCC
Confidence 34445566788888999999998865431 223455667778888887666554
No 311
>PLN02463 lycopene beta cyclase
Probab=36.21 E-value=59 Score=32.04 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=26.2
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccC
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P 277 (305)
-|++||+.|..-. .+|..|.+.|+++.||+.....+
T Consensus 29 ~DVvIVGaGpAGL---alA~~La~~Gl~V~liE~~~~~~ 64 (447)
T PLN02463 29 VDLVVVGGGPAGL---AVAQQVSEAGLSVCCIDPSPLSI 64 (447)
T ss_pred ceEEEECCCHHHH---HHHHHHHHCCCeEEEeccCccch
Confidence 4899999998432 23455667799999999865433
No 312
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.03 E-value=1.1e+02 Score=23.98 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
|++-..|...++.|++.|+++.++++....
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~ 39 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADAD 39 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCC
Confidence 344444444555666678999999987654
No 313
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=35.84 E-value=1.2e+02 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.3
Q ss_pred eCCcEEEEEe-----ChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCH
Q 021963 237 EGSDITLVGW-----GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280 (305)
Q Consensus 237 ~g~dv~Iia~-----G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~ 280 (305)
+|.+++|+.- |.....+...+..+..-|.++.++.++.+.|.++
T Consensus 186 ~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~ 234 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPE 234 (395)
T ss_pred CCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence 4567888764 6555444444445555699999999999887664
No 314
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=35.66 E-value=3.3e+02 Score=25.10 Aligned_cols=136 Identities=12% Similarity=0.035 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCEEEEecccCCCcccccchhhHhhhCCCcEEecchhHHHHH-HHHHHHHhCCCeEEEEecccchHHhH-
Q 021963 48 QALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIV-GFAIGLAAMGNRAIAEIQFADYIFPA- 125 (305)
Q Consensus 48 ~~L~~l~~~~~~iv~~~~D~~~g~~~~~~~~~~~~~gp~r~~~~gIaE~~~v-~~AaGlA~~G~~p~~~~~~~~F~~ra- 125 (305)
.++.+.-++.|+|+++.++.... .....+. -|-.++. ++...- .++.-+...|.+.|++++|.-.+...
T Consensus 77 ~af~kIkekRpDIl~ia~~~~ED------p~~i~~~-aDi~~~~--D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~ 147 (275)
T PF12683_consen 77 EAFRKIKEKRPDILLIAGEPHED------PEVISSA-ADIVVNP--DEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYEL 147 (275)
T ss_dssp HHHHHHHHH-TTSEEEESS--S-------HHHHHHH-SSEEEE----HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHH
T ss_pred HHHHHHHhcCCCeEEEcCCCcCC------HHHHhhc-cCeEecc--chhhccHHHHHHHHHcCCceEEEEechhhcchHH
Confidence 44455566667777766665421 2222333 3555553 333333 33333444599999998777776311
Q ss_pred ---HHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCC---CCC-chHH-HHHc-cCCCcEEEeeCCHHHHHHHHHH
Q 021963 126 ---FDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH---YHS-QSPE-AFFC-HVPGLKVVIPRSPRQAKGLLLS 196 (305)
Q Consensus 126 ---~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~---~hs-~~d~-a~~~-~iP~l~V~~P~d~~e~~~~l~~ 196 (305)
.-++....|... -+ +.+......+.++.|. ++- .||+ +++. .-++ +-|..+|.....-+++.
T Consensus 148 l~~Rr~~M~~~C~~l-------Gi-~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkd-taff~TN~a~~epllk~ 218 (275)
T PF12683_consen 148 LARRRDIMEEACKDL-------GI-KFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKD-TAFFCTNDAMTEPLLKQ 218 (275)
T ss_dssp HHHHHHHHHHHHHHC-------T---EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S---EEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-------CC-eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCc-eeEEecCccccHHHHHH
Confidence 112222344432 23 5554433333333322 221 2554 4443 3455 46777777788899999
Q ss_pred hHhCC
Q 021963 197 CIRDP 201 (305)
Q Consensus 197 a~~~~ 201 (305)
++++.
T Consensus 219 ~~~~g 223 (275)
T PF12683_consen 219 ALEYG 223 (275)
T ss_dssp HHHH-
T ss_pred HHHcC
Confidence 99864
No 315
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=35.38 E-value=1.1e+02 Score=22.14 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=36.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHh-----cCCCeEEEEeccccCCCHHHHHHHHh---ccCcEEEEeCCcccc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEK-----EGISCELIDLKTLIPWDKETVEASVR---KTGRLLPRSSGYWRF 303 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~-----~Gi~~~vI~~~~i~P~d~~~i~~~~~---~~~~vvvvEe~~~~~ 303 (305)
++|.+. +.-..|.+|.+.|++ .|+....+|+.. .+...+.+.+... .+-..|+++.-..++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 444443 345678888888877 799999999985 3333445555443 222445565544443
No 316
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.24 E-value=1.3e+02 Score=26.42 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=39.0
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHH
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV 287 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~ 287 (305)
+++++.|.--.-++-|++.|...|.+|+|+-+.--++...+..+...
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~ 99 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANL 99 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHH
Confidence 34667778889999999999999999999999988888887765553
No 317
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=35.06 E-value=71 Score=32.41 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=45.8
Q ss_pred cEEecchhHHH-HHHHHHHHHhCCCeEEEEecccchHHhHHHHHHHH--HhhcccccCCCcccceeEEEcCCcCCCCCCC
Q 021963 87 RVFNTPLCEQG-IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNE--AAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163 (305)
Q Consensus 87 r~~~~gIaE~~-~v~~AaGlA~~G~~p~~~~~~~~F~~ra~dqi~~~--~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~ 163 (305)
-.|-.||-|.- ++...--|..-|+ |+++ |-+. ..|||+.- +++.+ |-.|+++--- .|..|.
T Consensus 127 vvIsAGIP~le~A~ElI~~L~~~G~-~yv~--fKPG---tIeqI~svi~IAka~-------P~~pIilq~e---gGraGG 190 (717)
T COG4981 127 VVISAGIPSLEEAVELIEELGDDGF-PYVA--FKPG---TIEQIRSVIRIAKAN-------PTFPIILQWE---GGRAGG 190 (717)
T ss_pred EEEecCCCcHHHHHHHHHHHhhcCc-eeEE--ecCC---cHHHHHHHHHHHhcC-------CCCceEEEEe---cCccCC
Confidence 35666775543 2222222333343 5554 3333 35666643 34443 1115554322 234667
Q ss_pred CCCchHH--------HHHccCCCcEEEeeC---CHHHHHH
Q 021963 164 YHSQSPE--------AFFCHVPGLKVVIPR---SPRQAKG 192 (305)
Q Consensus 164 ~hs~~d~--------a~~~~iP~l~V~~P~---d~~e~~~ 192 (305)
|||.||+ +=+|+.+|+.++.=+ +|+++..
T Consensus 191 HHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~ 230 (717)
T COG4981 191 HHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAP 230 (717)
T ss_pred ccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhccc
Confidence 9998775 235888999777643 4454443
No 318
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=35.06 E-value=47 Score=26.50 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=25.7
Q ss_pred cEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 240 dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++++..+|+. ...+.+.++.|+++|.++.+|=-+.
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 5677777764 4668889999999999988775443
No 319
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=34.87 E-value=54 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.+.+++||+.| ...++++..|.+.|.++.+|+..
T Consensus 17 ~~~~VvIIG~G---~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAG---PAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEeCC
Confidence 45789999999 45577888888889999999963
No 320
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=34.84 E-value=1.1e+02 Score=28.89 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=35.5
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc-------------ccCCCHHHHHHHHhcc-CcEEEEe
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT-------------LIPWDKETVEASVRKT-GRLLPRS 297 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~-------------i~P~d~~~i~~~~~~~-~~vvvvE 297 (305)
++.|++.|........+ +++.|+++-++|... +.+.|.+.|.+.+++. -.+|+.|
T Consensus 1 kililG~g~~~~~l~~a---a~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIE---AQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHH---HHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 47788888765544444 445599888887654 3445778888888753 2355554
No 321
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=34.63 E-value=29 Score=27.24 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=26.3
Q ss_pred CCcEEEEEeChhH-HHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~~~-~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
..+++||++|... ..--+..+.|++.||.+++.|-.
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4689999999764 22344556888899999887754
No 322
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=34.47 E-value=1.1e+02 Score=29.25 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=38.8
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHH-hccCcEEEEeC
Q 021963 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~-~~~~~vvvvEe 298 (305)
.++.|++.+. ....+++.+..|++.|+.|++ ++.. +++ .+.++..- .+.+.++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l-~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKL-KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 4788888775 567899999999999999976 4433 444 34443332 24567888754
No 323
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=34.36 E-value=1.1e+02 Score=23.40 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=33.6
Q ss_pred cEEEEEeC----hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh
Q 021963 240 DITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (305)
Q Consensus 240 dv~Iia~G----~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~ 288 (305)
+++|+-.| +....+-++.+.|++.|++..+=-+.|.--=|.+.+.+.++
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~ 56 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIK 56 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHH
Confidence 45666666 44556667788888889998888888876555555554444
No 324
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=34.30 E-value=72 Score=25.03 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=22.4
Q ss_pred EEEEEeChh--HHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 241 ITLVGWGAQ--LSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 241 v~Iia~G~~--~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
|+|++.|+. +.-.+..+++|++.|.+|.+.-...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 456666664 5667777888888888887654433
No 325
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.24 E-value=71 Score=31.41 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=14.8
Q ss_pred CCHHHHHHHHhccCcEEEEeC
Q 021963 278 WDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe 298 (305)
.|.+.|.+.+++.+.+++|+.
T Consensus 172 ~di~~I~~la~~~gi~livD~ 192 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDN 192 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEEC
Confidence 788889888887765544443
No 326
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.12 E-value=1.5e+02 Score=26.73 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=37.2
Q ss_pred EEEEEeCh-hHHHHHHHHHHH-HhcCCCeEEEEeccccCCCHHH-----HHHHHhccCcEEEEeCCcc
Q 021963 241 ITLVGWGA-QLSIMEQACLDA-EKEGISCELIDLKTLIPWDKET-----VEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 241 v~Iia~G~-~~~~aleAa~~L-~~~Gi~~~vI~~~~i~P~d~~~-----i~~~~~~~~~vvvvEe~~~ 301 (305)
=+|+++|. ...+..+|++.+ +..+.++.+.++.+-.|-+.+. |..+-+.++..|=.-+|..
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~ 182 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD 182 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC
Confidence 36888886 568899999999 4557899999999999987764 3233335565555666644
No 327
>PRK07308 flavodoxin; Validated
Probab=33.96 E-value=1.3e+02 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=21.1
Q ss_pred eChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+|++-..|...++.|++.|+.+.+.++....
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~ 42 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTVD 42 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccCC
Confidence 3444555555666777779999988877643
No 328
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=33.92 E-value=21 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=25.8
Q ss_pred eeeCCcEEEEEeChhHH--HHHHHHHHHHhcCCCeEEEE
Q 021963 235 IREGSDITLVGWGAQLS--IMEQACLDAEKEGISCELID 271 (305)
Q Consensus 235 ~~~g~dv~Iia~G~~~~--~aleAa~~L~~~Gi~~~vI~ 271 (305)
+..+.+++||++|.... .--+..+.|++.||.+.+.|
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 34567899999998743 34455567888788766544
No 329
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=33.92 E-value=1.5e+02 Score=20.48 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=36.5
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc-cCcEEEEeCCccc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLPRSSGYWR 302 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~-~~~vvvvEe~~~~ 302 (305)
+++|.+. ..-..|.+|.+.|++.|++.+.+|+..- + +.+.+.+.... +-..|++.....+
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~~ig 62 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGELIG 62 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCEEEe
Confidence 3455554 6678899999999999999999998642 2 33334332121 2234556554443
No 330
>PHA03050 glutaredoxin; Provisional
Probab=33.54 E-value=1.7e+02 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCC---CeEEEEecc
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGI---SCELIDLKT 274 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi---~~~vI~~~~ 274 (305)
.++++|.+.. .-..|.+|.+.|++.|+ +.+++|+.-
T Consensus 12 ~~~V~vys~~-~CPyC~~ak~~L~~~~i~~~~~~~i~i~~ 50 (108)
T PHA03050 12 NNKVTIFVKF-TCPFCRNALDILNKFSFKRGAYEIVDIKE 50 (108)
T ss_pred cCCEEEEECC-CChHHHHHHHHHHHcCCCcCCcEEEECCC
Confidence 4567777764 46789999999999999 788999884
No 331
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=33.48 E-value=1.7e+02 Score=26.27 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=47.2
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCCCCcccCCceEEeeeCCcEEEEEeChhHHHHHHHHHH
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~Iia~G~~~~~aleAa~~ 259 (305)
.|+.|.||+++..+-.. ++ .+..+... ..+.+-.|. -+|.+++++++|.....|--++++
T Consensus 14 ~vi~~Gdp~r~~~ia~~-l~--~~~~~~~~-------------r~~~~~~G~----~~g~~v~v~~~GiG~~~aai~~~e 73 (245)
T TIGR01718 14 YVILPGDPDRVEKIAAH-MD--KPVKVASN-------------REFVTYRGE----LDGKPVIVCSTGIGGPSTAIAVEE 73 (245)
T ss_pred eEEecCCHHHHHHHHHh-cC--CcEEEecc-------------CCEEEEEEE----ECCEEEEEEcCCCCHHHHHHHHHH
Confidence 59999999999876653 33 33333111 011111122 267899999999988777777787
Q ss_pred HHhcCCCeEEEEecccc
Q 021963 260 AEKEGISCELIDLKTLI 276 (305)
Q Consensus 260 L~~~Gi~~~vI~~~~i~ 276 (305)
|-+.|.+. +|++-+-=
T Consensus 74 Li~~g~~~-iIr~GtaG 89 (245)
T TIGR01718 74 LAQLGART-FIRVGTTG 89 (245)
T ss_pred HHHhCCCE-EEEeeccc
Confidence 77667653 55555433
No 332
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=33.21 E-value=1.2e+02 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=37.0
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHH-hccCcEEEEeC
Q 021963 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~-~~~~~vvvvEe 298 (305)
.++.|+..|. ....|++.++.|+++|+.+.+ +... ..+ .+.+...- ++...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 5888888775 346789999999999999887 4433 233 33443322 23456676653
No 333
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=33.07 E-value=1.2e+02 Score=21.14 Aligned_cols=16 Identities=19% Similarity=0.112 Sum_probs=7.9
Q ss_pred HHHHHHHhccCcEEEE
Q 021963 281 ETVEASVRKTGRLLPR 296 (305)
Q Consensus 281 ~~i~~~~~~~~~vvvv 296 (305)
+.|.+.+++-+++|++
T Consensus 54 ~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 54 EALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHcCCEEEEe
Confidence 3444555555555543
No 334
>PRK12753 transketolase; Reviewed
Probab=32.87 E-value=4.7e+02 Score=27.25 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC--CchHH-HHHccCCCcEEEeeCCH---HHHHHHHHH
Q 021963 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIPRSP---RQAKGLLLS 196 (305)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h--s~~d~-a~~~~iP~l~V~~P~d~---~e~~~~l~~ 196 (305)
...+|-+. .++.++ ++. -++++...+..- ++.++ ..+|+ ..++.. |+.++.+.|. .++..++..
T Consensus 161 G~~~EA~~-~A~~~k------L~n-Li~ivd~N~~~i-~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~ 230 (663)
T PRK12753 161 GISHEVCS-LAGTLG------LGK-LIGFYDHNGISI-DGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILE 230 (663)
T ss_pred HHHHHHHH-HHHHHC------CCC-EEEEEECCCCcC-CCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHH
Confidence 35677665 455544 332 233444444322 22222 13444 456666 8888765554 455556666
Q ss_pred hHhC-CCCEEEecccc
Q 021963 197 CIRD-PNPVVFFEPKW 211 (305)
Q Consensus 197 a~~~-~~Pv~i~~~~~ 211 (305)
+.+. ++|++|.....
T Consensus 231 a~~~~~~P~~I~~~T~ 246 (663)
T PRK12753 231 AQSVKDKPSLIICRTI 246 (663)
T ss_pred HHHCCCCeEEEEEEEe
Confidence 6554 78999965443
No 335
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=32.79 E-value=2.1e+02 Score=22.99 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=30.2
Q ss_pred EEEEEeChhHHHHHHHHH----HHHhc-CCCeEEEEeccccCCCHHHHHHHHh-ccCcEEEE
Q 021963 241 ITLVGWGAQLSIMEQACL----DAEKE-GISCELIDLKTLIPWDKETVEASVR-KTGRLLPR 296 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~----~L~~~-Gi~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvv 296 (305)
++|++.|+--..+.+..+ .+++. ++.+.+=-+-.-.|--.+.+.+..+ ..++++|+
T Consensus 3 lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 3 IIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 577888877665555444 33322 4444433333345655566766554 34566665
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=32.76 E-value=60 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=27.4
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.+.+++||+.|. ..+.|+..|.+.|.++.|++-.
T Consensus 132 ~~~~V~IIG~G~---aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGP---AGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHHCCCcEEEEecC
Confidence 356899999984 5566788888889999999853
No 337
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=32.75 E-value=1.9e+02 Score=24.09 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccC--C--------CHHHHHHHHhccCcEEEEeCCccc
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIP--W--------DKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P--~--------d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
+...+..+++.+++.|.+++++|+.-+.. + +.+.+.+.++..+.+|++-.-|.+
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~ 78 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKA 78 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccC
Confidence 34555566677877799999999875421 1 113456667778888887665553
No 338
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=32.70 E-value=80 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.4
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeE
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCE 268 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~ 268 (305)
...|++|......|.|.+++|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68899999999999999999999999774
No 339
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=32.53 E-value=53 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=22.4
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+++.++||+||+.-+ .-+..|++.|++|.|-.-.
T Consensus 3 ~~k~IAViGyGsQG~---a~AlNLrDSG~~V~Vglr~ 36 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH---AHALNLRDSGVNVIVGLRE 36 (165)
T ss_dssp CTSEEEEES-SHHHH---HHHHHHHHCC-EEEEEE-T
T ss_pred CCCEEEEECCChHHH---HHHHHHHhCCCCEEEEecC
Confidence 567899999998732 3455688889988765443
No 340
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=32.48 E-value=62 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=22.2
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEE
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI 270 (305)
.++..++++|.+..-..+..++..|++.|+++.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 34566777765443235666778888889975443
No 341
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=32.48 E-value=88 Score=29.88 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.4
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.+++++||+.|. .++|++..|.+.|.+++||...
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 356789998885 4667777888889999999764
No 342
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=32.17 E-value=55 Score=26.00 Aligned_cols=38 Identities=39% Similarity=0.670 Sum_probs=26.3
Q ss_pred eeeCCcEEEEEeChh--HHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 235 IREGSDITLVGWGAQ--LSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 235 ~~~g~dv~Iia~G~~--~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+-++.+++||++|.. +...-+|.+.+++.| ++|+-.+|
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~--~~vi~~pT 97 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKKG--CEVIELPT 97 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhcC--CeEEEeCC
Confidence 347889999999974 555666777777765 44554444
No 343
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.11 E-value=1e+02 Score=25.31 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=30.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLP 295 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvv 295 (305)
+|++++|++-+..+..- .+..|.++|..+.+.+-++. .+.+.+++.+-|++
T Consensus 27 ~gk~v~VvGrs~~vG~p--la~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvs 77 (140)
T cd05212 27 DGKKVLVVGRSGIVGAP--LQCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVV 77 (140)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEE
Confidence 45677776665555544 45567777877777775552 23445555554443
No 344
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=31.90 E-value=2.1e+02 Score=23.11 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc-CcEEEEeC
Q 021963 251 SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-GRLLPRSS 298 (305)
Q Consensus 251 ~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~-~~vvvvEe 298 (305)
..+.++++.+++.|+.+-+|.+. .+.+.+.+++.+... ++.+.+++
T Consensus 116 ~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 44555666677788988888887 578888888877654 45666654
No 345
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=31.64 E-value=2.6e+02 Score=32.53 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=26.8
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 178 ~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
|+.-....+++|+..++.++...++|++|
T Consensus 856 G~~~~rV~~~~eL~~aL~~a~~~~~p~lI 884 (1655)
T PLN02980 856 GVRHLHVGTKSELEDALFTSQVEQMDCVV 884 (1655)
T ss_pred CCceeecCCHHHHHHHHHHhhccCCCEEE
Confidence 77888889999999999999998999999
No 346
>PTZ00062 glutaredoxin; Provisional
Probab=31.14 E-value=1.5e+02 Score=25.98 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCcEEEEEeCh----hHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGA----QLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~----~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.++++|++-|+ ....|.++.+.|++.|++...+|+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~ 151 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF 151 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence 34566666663 4678889999999999999999986
No 347
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=31.13 E-value=66 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.6
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
|++||+.|.. .+.|+..|.+.|+++.||+-
T Consensus 2 dvvIIG~G~a---Gl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 2 DVIIIGAGPA---GLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred cEEEECCCHH---HHHHHHHHHHCCCCEEEEec
Confidence 6899998864 34556677778999999995
No 348
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=30.75 E-value=69 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.1
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
+|+||+.|..- +.++..|+++|++++|++-
T Consensus 3 siaIVGaGiAG---l~aA~~L~~aG~~vtV~eK 32 (331)
T COG3380 3 SIAIVGAGIAG---LAAAYALREAGREVTVFEK 32 (331)
T ss_pred cEEEEccchHH---HHHHHHHHhcCcEEEEEEc
Confidence 68999999853 3456778999999999984
No 349
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.64 E-value=4.4e+02 Score=24.51 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=45.6
Q ss_pred eCCcEEEEEeCh-----hHHHHHHHHHHHHhcCC-CeEEEEecccc-----------CCCHHHHHHHHhc--cCcEEEEe
Q 021963 237 EGSDITLVGWGA-----QLSIMEQACLDAEKEGI-SCELIDLKTLI-----------PWDKETVEASVRK--TGRLLPRS 297 (305)
Q Consensus 237 ~g~dv~Iia~G~-----~~~~aleAa~~L~~~Gi-~~~vI~~~~i~-----------P~d~~~i~~~~~~--~~~vvvvE 297 (305)
.|+|+.||.+.. .+-+.+-.++.|++.|- ++.+|=+..-+ |+....+.+.+.. .++|+++|
T Consensus 35 ~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD 114 (304)
T PRK03092 35 RGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVD 114 (304)
T ss_pred CCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEe
Confidence 368899988843 23455567778877776 46666443322 7777888888876 58999999
Q ss_pred CCcc
Q 021963 298 SGYW 301 (305)
Q Consensus 298 e~~~ 301 (305)
-|..
T Consensus 115 ~H~~ 118 (304)
T PRK03092 115 LHTA 118 (304)
T ss_pred cChH
Confidence 9964
No 350
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=30.63 E-value=1.8e+02 Score=25.27 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=36.1
Q ss_pred cEEEEEeCh-------hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEe
Q 021963 240 DITLVGWGA-------QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRS 297 (305)
Q Consensus 240 dv~Iia~G~-------~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvE 297 (305)
++.||..+. ....|.+.++.|++.|+.+.+ |.+.-+.+-.+.-....++.+-+++|=
T Consensus 12 qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~r~~~s~g~K~~~ae~~GvP~~I~IG 75 (202)
T cd00862 12 QVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHV-DDRDNYTPGWKFNDWELKGVPLRIEIG 75 (202)
T ss_pred eEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEE-ECCCCCCHhHHHHHHHhCCCCEEEEEC
Confidence 566776653 456788889999999999977 665532444443233345566555553
No 351
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=30.45 E-value=1.2e+02 Score=28.44 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCC-eEEEEeccc
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGIS-CELIDLKTL 275 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~-~~vI~~~~i 275 (305)
|+.++||+.|.. +++++..|.+.|.+ +.||..+..
T Consensus 172 g~~vvViG~G~~---g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 172 GKKVVVVGAGLT---AVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCEEEEECCCHH---HHHHHHHHHHcCCCeEEEEeecch
Confidence 568999998854 66777777777997 999987653
No 352
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=30.34 E-value=1.2e+02 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=26.1
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.|+++.|+++|.+... ++..|+..|.++.++|-+.
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCH
Confidence 4688999999985554 4455666688888888763
No 353
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=30.07 E-value=2.1e+02 Score=24.64 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCeEEEEeccccC---CCHHHHHHHHhccCcEEEEeCCcc
Q 021963 253 MEQACLDAEKEGISCELIDLKTLIP---WDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 253 aleAa~~L~~~Gi~~~vI~~~~i~P---~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
+.++.....+++.++++.|+....| +|.+.-++.+...++||+.=.-++
T Consensus 22 ~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~w 73 (184)
T PRK04930 22 ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYT 73 (184)
T ss_pred HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCccc
Confidence 4444444445567899999999877 677766677888888887654443
No 354
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=30.01 E-value=70 Score=31.53 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.+.+++||+.|. ..+.|+..|.+.|.++.|++-.
T Consensus 142 ~~~~VvIIGaGp---AGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGP---AGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHhCCCcEEEEecC
Confidence 467899999995 4456777788889999999853
No 355
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=29.96 E-value=1.6e+02 Score=24.62 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc-CcEEEEeCC
Q 021963 254 EQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-GRLLPRSSG 299 (305)
Q Consensus 254 leAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~-~~vvvvEe~ 299 (305)
.++++.|++.|+.+-+|+... .+++.+.+++++..+ ++.+.+++.
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~-~~~~~~~l~~iA~~tgG~~~~~~d~ 167 (178)
T cd01451 122 LAAARKLRARGISALVIDTEG-RPVRRGLAKDLARALGGQYVRLPDL 167 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCC-CccCccHHHHHHHHcCCeEEEcCcC
Confidence 677888999999998888664 345777788888776 466666654
No 356
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.94 E-value=63 Score=23.10 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=32.9
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCCeEEEEecc-----------ccCCCHHHHHHHHhcc
Q 021963 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKT-----------LIPWDKETVEASVRKT 290 (305)
Q Consensus 243 Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~-----------i~P~d~~~i~~~~~~~ 290 (305)
||+. ...+.|+++-+.|++.|++++++-.+. +.+=|.+.+.+.+++.
T Consensus 5 ~i~F-~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~ 62 (73)
T PF11823_consen 5 LITF-PSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEEN 62 (73)
T ss_pred EEEE-CCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHC
Confidence 3444 346778999999999999999986543 2344566677777654
No 357
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=29.84 E-value=2.3e+02 Score=26.32 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=10.0
Q ss_pred CHHHHHHHHhccCcEEEEeC
Q 021963 279 DKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 279 d~~~i~~~~~~~~~vvvvEe 298 (305)
|.+.|.+.+++++..++|+.
T Consensus 147 ~i~~I~~l~~~~g~~livD~ 166 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDA 166 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEc
Confidence 34555555555554444443
No 358
>PLN02530 histidine-tRNA ligase
Probab=29.18 E-value=1.3e+02 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=37.1
Q ss_pred CcEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-ccCcEEEEeC
Q 021963 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvvEe 298 (305)
.++.|+..+.. ...|++.++.|+++|+++++. +.. +.+ .+.++..-+ +.+.++++.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd-~~~-~~l-~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLV-LEP-KKL-KWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe-cCC-CCH-HHHHHHHHHCCCCEEEEEch
Confidence 46788876654 578999999999999999763 333 334 344443322 3456777754
No 359
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.16 E-value=83 Score=23.98 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=18.3
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
++|+++|.... +.++.|.+.++++.+|+..
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 46777776544 4455666666677777743
No 360
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=29.05 E-value=66 Score=27.37 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEeccccCCC
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d 279 (305)
|.+-..|...+..|++.|+.|++.|+.-+.-++
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~ 44 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPA 44 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhccC
Confidence 456666777777899999999999998877543
No 361
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.86 E-value=4.1e+02 Score=24.69 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=44.2
Q ss_pred eCCcEEEEEeChh----HHHHHHHHHHHHhcCC-CeEEEEeccc-----------cCCCHHHHHHHHhc-cCcEEEEeCC
Q 021963 237 EGSDITLVGWGAQ----LSIMEQACLDAEKEGI-SCELIDLKTL-----------IPWDKETVEASVRK-TGRLLPRSSG 299 (305)
Q Consensus 237 ~g~dv~Iia~G~~----~~~aleAa~~L~~~Gi-~~~vI~~~~i-----------~P~d~~~i~~~~~~-~~~vvvvEe~ 299 (305)
.|+|+.|+.+... .-+.+-.++.|++.|. ++.+|=+..- -|+..+.+.+.+.. .++|+++|-|
T Consensus 48 ~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH 127 (301)
T PRK07199 48 AGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPH 127 (301)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEecc
Confidence 3689999998653 4455566778887776 3655533221 27777777777764 6899999998
Q ss_pred c
Q 021963 300 Y 300 (305)
Q Consensus 300 ~ 300 (305)
.
T Consensus 128 ~ 128 (301)
T PRK07199 128 L 128 (301)
T ss_pred c
Confidence 5
No 362
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=28.80 E-value=2.3e+02 Score=21.78 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=26.0
Q ss_pred EEEEEeChhHHHHHHHH----HHHHhc-C-CCeEEEEeccccCCCHHHHHHHHh-ccCcEEEE
Q 021963 241 ITLVGWGAQLSIMEQAC----LDAEKE-G-ISCELIDLKTLIPWDKETVEASVR-KTGRLLPR 296 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa----~~L~~~-G-i~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvv 296 (305)
++|++.|+.-..+.+.. +.|+++ + ..+.+--+..-.|--.+.|.+..+ ..++++++
T Consensus 3 ~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vv 65 (117)
T cd03414 3 VVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVL 65 (117)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 56677776544333333 333333 2 233333333335555566655543 24455543
No 363
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.77 E-value=5.6e+02 Score=26.17 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred EEecchhHHHHHHHHHHHHhC----CC-eEEEEecccch--H-HhHHHHHHHHHhhcccccCCCcccceeEE-EcCCcCC
Q 021963 88 VFNTPLCEQGIVGFAIGLAAM----GN-RAIAEIQFADY--I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAV 158 (305)
Q Consensus 88 ~~~~gIaE~~~v~~AaGlA~~----G~-~p~~~~~~~~F--~-~ra~dqi~~~~a~~~~~~~~~~~v~~lv~-~~~~g~~ 158 (305)
++.+|+.= +.+++|.|+|++ |. ..++++ +++- . ..++|.+-+ ++.++ . ++|+ +...+.+
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~-iGDG~~~eG~~~EAln~-A~~~k------~---~li~Ii~dN~~s 176 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAV-IGDGSLSGGLALEGLNN-AAELK------S---NLIIIVNDNQMS 176 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEE-ECchhhhcchHHHHHHH-HHhhC------C---CEEEEEECCCCc
Confidence 34666644 577888888775 32 234443 5653 3 367787654 55544 2 3343 3333322
Q ss_pred CC---CCCCCC--------chH-HHHHccC--CCcEEEeeCCHHHHHHHHHHhHhCCCCEEEecc
Q 021963 159 GH---GGHYHS--------QSP-EAFFCHV--PGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEP 209 (305)
Q Consensus 159 ~~---~g~~hs--------~~d-~a~~~~i--P~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~ 209 (305)
.. ++..+. ..+ ...+.++ +.+.++..-|..++..+++.+-+.++|++|...
T Consensus 177 i~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~ 241 (581)
T PRK12315 177 IAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIH 241 (581)
T ss_pred CCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 21 111111 111 1344554 444444556777777777777667899999543
No 364
>PRK13984 putative oxidoreductase; Provisional
Probab=28.76 E-value=71 Score=32.57 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=28.1
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+.+.+++||+.| ...+.|+..|++.|+++.|++-.
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~vie~~ 315 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTVYESL 315 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEEEecC
Confidence 457789999988 46667788888899999999643
No 365
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=28.75 E-value=2e+02 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHHHhcCCCeEEEEecccc
Q 021963 247 GAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 247 G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
|++-..|...++.|+. |++++++++....
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~ 40 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIE 40 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcC
Confidence 5555666666677776 8889998877654
No 366
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=28.65 E-value=1.9e+02 Score=27.56 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=25.6
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
+|+.+.||++|++-+. .+..|+..|+++.+.+-
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVR 47 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEEC
Confidence 4678999999998763 34567778999988863
No 367
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.39 E-value=1.7e+02 Score=26.63 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccCCCHH
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKE 281 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~ 281 (305)
+..+++-++..++.|++.-++-++...+.+.+
T Consensus 82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~ 113 (289)
T PF00701_consen 82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQE 113 (289)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHH
T ss_pred HHHHHHHHHHHhhcCceEEEEeccccccchhh
Confidence 34444444444444444444443333333433
No 368
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=28.38 E-value=1.2e+02 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=35.2
Q ss_pred EEEEEeChh----HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEe
Q 021963 241 ITLVGWGAQ----LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRS 297 (305)
Q Consensus 241 v~Iia~G~~----~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvE 297 (305)
++|++=|.. .....++++.+++.|+.+-.|-+.. .|.+.|.+.+...+..+.+|
T Consensus 113 iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~---~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 113 LLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS---QNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred EEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc---cchHHHHHHHcCCcchhhhc
Confidence 455565642 2234567778888899988887654 68888877766555445444
No 369
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=28.36 E-value=2e+02 Score=23.09 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=32.4
Q ss_pred EEEeChhH----HHHHHHHHHHHhc-CCCeEEEEeccccCCCHHHHHHHHh--ccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVR--KTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~-Gi~~~vI~~~~i~P~d~~~i~~~~~--~~~~vvvvEe~ 299 (305)
|+++|+.. .....++++|++. .-.++++|..+ -|++ .+ ..+. +++++|+|+--
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~--~~-~~l~~~~~d~vIiVDAv 61 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPEN--FT-GKIREEKPDLIVIVDAA 61 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHH--HH-HHHHhcCCCEEEEEECC
Confidence 56677654 2455677777654 23588888877 3333 22 3333 67888888763
No 370
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=28.25 E-value=1.1e+02 Score=30.21 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=68.6
Q ss_pred ecchhHHHHHHHHHHHHhCCCeE-EEEecccchHHhHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCCCc-
Q 021963 90 NTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ- 167 (305)
Q Consensus 90 ~~gIaE~~~v~~AaGlA~~G~~p-~~~~~~~~F~~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~hs~- 167 (305)
-.+--||+..-+|-|.|..-.+| +|-.+.++........+...++ . .+ |+|+...-.+...-|+-.-|
T Consensus 133 vLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNvvtp~ADAla--D-------g~-PlVvftGQVptsaIGtDAFQE 202 (675)
T KOG4166|consen 133 VLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNVVTPLADALA--D-------GV-PLVVFTGQVPTSAIGTDAFQE 202 (675)
T ss_pred cccccccccchhhhhhhhhcCCCcEEEEecCCCcccccchhhHHhh--c-------CC-cEEEEecccchhhcccchhcc
Confidence 45678999999999999986665 3322566654333333332221 1 23 67655322222222222212
Q ss_pred -hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccc
Q 021963 168 -SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (305)
Q Consensus 168 -~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 212 (305)
.-..+-|++-.++|+. .|.+|+-..+++|++ .++||.+-.||..
T Consensus 203 adiVgisRScTKwNvmV-kdVedlPrrI~EAFeiATSGRPGPVLVDlPKDv 252 (675)
T KOG4166|consen 203 ADIVGISRSCTKWNVMV-KDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDV 252 (675)
T ss_pred CCeeeeeeccceeheee-ecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHH
Confidence 2346678887776654 678899999999998 3899999777764
No 371
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=28.12 E-value=3.2e+02 Score=25.29 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred HHHHHHHHhC----CCeEEEEecccchH---HhHHHHHHHHHhhcccccCCCcccceeEEEc-CCcCCCCC---CCCCCc
Q 021963 99 VGFAIGLAAM----GNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVGHG---GHYHSQ 167 (305)
Q Consensus 99 v~~AaGlA~~----G~~p~~~~~~~~F~---~ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~-~~g~~~~~---g~~hs~ 167 (305)
+..|+|.|++ |.+.++-..+++-. ...+|-+ |-++.++ +|+ -.|+.. ..+.++.. .+....
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~~------lPv-ifvveNN~~aist~~~~~~~~~~~ 178 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALWK------LPV-IFVVENNQYAISTPTEEQTASPDI 178 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHTT------TSE-EEEEEEESEETTEEHHHHCSSSTS
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhcc------CCe-EEEEecCCcccccCccccccccch
Confidence 4555565553 54443333477754 2344443 4556555 444 233222 22222211 111124
Q ss_pred hHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEE
Q 021963 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (305)
Q Consensus 168 ~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~----~~Pv~i 206 (305)
.|.+-.-.+|.+. +.=.|+.++...+++|+++ ++|++|
T Consensus 179 ~~~a~~~gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~li 220 (300)
T PF00676_consen 179 ADRAKGYGIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLI 220 (300)
T ss_dssp GGGGGGTTSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEE
T ss_pred hhhhhccCCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5555555688764 5779999999999999973 799999
No 372
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.08 E-value=1.9e+02 Score=24.14 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=30.2
Q ss_pred cEEEEEeC-hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc
Q 021963 240 DITLVGWG-AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK 289 (305)
Q Consensus 240 dv~Iia~G-~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~ 289 (305)
++.||.-| +-...+.++++.|++-|+.+++ .+-+.+-.+++. .+.++.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~l-~~~~~~ 50 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPERL-LEFVKE 50 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHHH-HHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHH-HHHHHH
Confidence 45555544 3578999999999999998874 666666555543 355544
No 373
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.05 E-value=2.3e+02 Score=27.94 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=40.8
Q ss_pred eCCcEEEEEeChhH-HHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh-ccCcEEEEeC
Q 021963 237 EGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLPRSS 298 (305)
Q Consensus 237 ~g~dv~Iia~G~~~-~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvvEe 298 (305)
...++.|++.|... ..|++.++.|++.|+++++--... .+ .+.++..-+ ..+-+|++-+
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r--~~-k~q~k~A~~~g~~~~viiGe 394 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGR--KL-KKQFKYADKLGARFAVILGE 394 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccc--cH-HHHHHHHHHCCCCEEEEEcc
Confidence 35799999999987 899999999999999988765443 22 344433222 2345565544
No 374
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=27.96 E-value=1.5e+02 Score=27.22 Aligned_cols=61 Identities=8% Similarity=-0.028 Sum_probs=35.2
Q ss_pred CCcEEEEEeChhH----HHHHHHHHHHH-hcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 238 GSDITLVGWGAQL----SIMEQACLDAE-KEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 238 g~dv~Iia~G~~~----~~aleAa~~L~-~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
|.|.+++..-... ....+-.+.+. .-++.+-++|. +=..++.+.+.++++.+++|+-+=+.
T Consensus 94 Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~-~g~~l~~~~l~~L~~~~pnivgiKds 159 (289)
T cd00951 94 GADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR-ANAVLTADSLARLAERCPNLVGFKDG 159 (289)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-CCCCCCHHHHHHHHhcCCCEEEEEeC
Confidence 6666666533221 22222233343 33788888883 43468888888877547777766543
No 375
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=27.74 E-value=1.9e+02 Score=29.57 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=41.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc-------------cCCCHHHHHHHHhccCcEEEEeCC
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL-------------IPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i-------------~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
..+.+.||+.|.......+++.+| |+++-++|...- ...|.+.+.+.+++. .++++|..
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l---G~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~-dvIt~e~e 92 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM---GIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRC-DVLTVEIE 92 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHC-CEEEEecC
Confidence 346789999997766666665554 999999887431 234667787777775 57777744
No 376
>PRK12754 transketolase; Reviewed
Probab=27.59 E-value=7e+02 Score=26.06 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC--CchHH-HHHccCCCcEEEe---eCCHHHHHHHHHHh
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLSC 197 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h--s~~d~-a~~~~iP~l~V~~---P~d~~e~~~~l~~a 197 (305)
..+|.+. .++.++ ++. -++++...+..- +|.+. ..+|+ ..+++. |+.++. =.|.+++..++.++
T Consensus 162 ~~~EA~~-~A~~~k------L~n-Li~ivD~N~~~i-dg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a 231 (663)
T PRK12754 162 ISHEVCS-LAGTLK------LGK-LIAFYDDNGISI-DGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEA 231 (663)
T ss_pred HHHHHHH-HHHHhC------CCC-EEEEEEcCCCcc-CcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHH
Confidence 4666654 345444 442 234444444332 33322 13555 345555 676654 34555666666666
Q ss_pred Hh-CCCCEEEecccc
Q 021963 198 IR-DPNPVVFFEPKW 211 (305)
Q Consensus 198 ~~-~~~Pv~i~~~~~ 211 (305)
.. .++|++|.....
T Consensus 232 ~~~~~~Pt~I~~~T~ 246 (663)
T PRK12754 232 RAVTDKPSLLMCKTI 246 (663)
T ss_pred HhcCCCCEEEEEEee
Confidence 54 478999965443
No 377
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=27.52 E-value=2e+02 Score=27.78 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=41.6
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccC------------C-CHHHHHHHHhccCcEEEEeC
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP------------W-DKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P------------~-d~~~i~~~~~~~~~vvvvEe 298 (305)
+.+.||+-|.....-..|+..| |+++.|+|+..=.| . |.+.+++++.+.+ |||.|-
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l---G~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~D-ViT~Ef 70 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL---GIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCD-VITYEF 70 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc---CCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCC-EEEEee
Confidence 3578999998877776777777 99999999655443 1 4578888887764 888884
No 378
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.47 E-value=1e+02 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEE
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI 270 (305)
.+.+++.++++|.....|.+.+..|+..|..+..+
T Consensus 11 ~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 11 AKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred HhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEe
Confidence 34467899999999999999999898878766655
No 379
>PRK08105 flavodoxin; Provisional
Probab=27.42 E-value=69 Score=26.37 Aligned_cols=35 Identities=11% Similarity=-0.072 Sum_probs=23.6
Q ss_pred EEEeChhHHHHHHHHH----HHHhcCCCeEEEEeccccC
Q 021963 243 LVGWGAQLSIMEQACL----DAEKEGISCELIDLKTLIP 277 (305)
Q Consensus 243 Iia~G~~~~~aleAa~----~L~~~Gi~~~vI~~~~i~P 277 (305)
.|-||+....+.+.|+ .|++.|+++.++++..+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~ 43 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSD 43 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCc
Confidence 4556776666665554 5556699999998876543
No 380
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.17 E-value=1.8e+02 Score=22.60 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=33.4
Q ss_pred CcEEEEEeChhHHHHHHHHH-HHHhcCCCeEEEEeccccC--CCHHHHHHHHh
Q 021963 239 SDITLVGWGAQLSIMEQACL-DAEKEGISCELIDLKTLIP--WDKETVEASVR 288 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~-~L~~~Gi~~~vI~~~~i~P--~d~~~i~~~~~ 288 (305)
.|+++ .|.-+..-++-.+ .+++.|+.+.+||+.---| +|.+.+.+.++
T Consensus 51 ~DvIl--l~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 51 YDLYL--VSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred CCEEE--EChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHH
Confidence 46444 4555555555444 4556799999999999997 88887776665
No 381
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=27.07 E-value=88 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.||+||+-|. ..++||-.|.+.|+++.|++++.
T Consensus 3 ~dVvVIGGGl---AGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGL---AGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCH---HHHHHHHHHHhCCCcEEEEEccC
Confidence 4799999885 34456667778899999999643
No 382
>PRK12831 putative oxidoreductase; Provisional
Probab=27.06 E-value=81 Score=31.11 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.2
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
.+.+++||+.|. ..+.|+..|++.|.++.|++-
T Consensus 139 ~~~~V~IIG~Gp---AGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 139 KGKKVAVIGSGP---AGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHhCCCeEEEEec
Confidence 467999999995 445567778788999999984
No 383
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=27.05 E-value=97 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=29.1
Q ss_pred EEEEEeChhHHHHHHHHHHHHh-cCCCeEEEEeccccC--CCHHHHHHHHhccCcEE
Q 021963 241 ITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIP--WDKETVEASVRKTGRLL 294 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~-~Gi~~~vI~~~~i~P--~d~~~i~~~~~~~~~vv 294 (305)
++|++-|.......++++.|++ .|+. ++-+..=.+ .|.+.|.+...+-.+++
T Consensus 107 villTDG~~~~~~~~~~~~l~~~~~v~--v~~vg~g~~~~~~~~~L~~ia~~~~~~~ 161 (163)
T cd01476 107 VVVLTDGRSHDDPEKQARILRAVPNIE--TFAVGTGDPGTVDTEELHSITGNEDHIF 161 (163)
T ss_pred EEEECCCCCCCchHHHHHHHhhcCCCE--EEEEECCCccccCHHHHHHHhCCCcccc
Confidence 4455555332223455667777 4544 444444455 88888877766555554
No 384
>PRK05967 cystathionine beta-lyase; Provisional
Probab=26.76 E-value=1.4e+02 Score=28.99 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=16.8
Q ss_pred cCCCHHHHHHHHhccCcEEEEeCCcc
Q 021963 276 IPWDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
...|.+.|.+.+++++.+++|++-+-
T Consensus 164 ~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 164 EMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred cHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 44555666677777777777776653
No 385
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.74 E-value=1.7e+02 Score=27.23 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=28.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccC
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~ 291 (305)
+|++++||+.|..+..-+ +..|.++|..+.+.+-++ ..+.+.+++.+
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~AD 203 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDAD 203 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCC
Confidence 456788888877665543 445666677777777654 23444455544
No 386
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.74 E-value=1.1e+02 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=26.9
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcC-CCeEEEE
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEG-ISCELID 271 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~G-i~~~vI~ 271 (305)
++.|++.|.....|..+...|...| +.+.+++
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~ 33 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEA 33 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 3678999999999999999898775 8888776
No 387
>PRK09004 FMN-binding protein MioC; Provisional
Probab=26.70 E-value=1.9e+02 Score=23.68 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=29.9
Q ss_pred EEEeChhHHHHHHHHH----HHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 243 LVGWGAQLSIMEQACL----DAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 243 Iia~G~~~~~aleAa~----~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
.|-||+....+.+.|+ .|++.|+++.++++.. + +.+.+.+.++++-..+
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--------~-~~l~~~~~li~~~sT~ 57 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--------L-DDLSASGLWLIVTSTH 57 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--------H-HHhccCCeEEEEECCC
Confidence 3447777766666665 4455699999887532 1 2234566677665443
No 388
>PRK14694 putative mercuric reductase; Provisional
Probab=26.69 E-value=1.3e+02 Score=29.47 Aligned_cols=37 Identities=5% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccC
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P 277 (305)
+++++||+.|. .++|.+..|.+.|.++.++....+-|
T Consensus 178 ~~~vvViG~G~---~G~E~A~~l~~~g~~Vtlv~~~~~l~ 214 (468)
T PRK14694 178 PERLLVIGASV---VALELAQAFARLGSRVTVLARSRVLS 214 (468)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 56899999885 47777888888899999998654444
No 389
>PRK12831 putative oxidoreductase; Provisional
Probab=26.65 E-value=1.8e+02 Score=28.68 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=31.4
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCC
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d 279 (305)
..|++++||+.|. .+++++..|...|.+|.++..+.-..++
T Consensus 279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r~~~~~m~ 319 (464)
T PRK12831 279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYRRSEEELP 319 (464)
T ss_pred cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 3578999999996 4667777777779999999887654444
No 390
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=26.59 E-value=2.3e+02 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=26.0
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+++|++.|.......++++.+-.+.-++..+++..
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~ 36 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPP 36 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 47899999888888889988854434666666553
No 391
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=26.41 E-value=2.3e+02 Score=27.86 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=49.6
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCCCCcccCC---ceEEeeeCCcEEEEEeChhHH
Q 021963 175 HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLS---EAEVIREGSDITLVGWGAQLS 251 (305)
Q Consensus 175 ~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~g---k~~~~~~g~dv~Iia~G~~~~ 251 (305)
..|. .|+.|.+.+|+..+++.|-+.+.|+.++-.. ++.......+...+... +...+.+.+..+-+..|....
T Consensus 13 ~~p~-~v~~P~s~eev~~iv~~A~~~~~~v~v~G~G---hS~s~~~~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~ 88 (438)
T TIGR01678 13 ASPE-VYYQPTSVEEVREVLALAREQKKKVKVVGGG---HSPSDIACTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLY 88 (438)
T ss_pred CCCC-EEEecCCHHHHHHHHHHHHHCCCeEEEECCC---CCCCCCccCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHH
Confidence 3454 5899999999999999999988899885322 11111111111111111 111122334566777788877
Q ss_pred HHHHHHHHHHhcCCC
Q 021963 252 IMEQACLDAEKEGIS 266 (305)
Q Consensus 252 ~aleAa~~L~~~Gi~ 266 (305)
...+ .|.++|..
T Consensus 89 ~L~~---~L~~~Gl~ 100 (438)
T TIGR01678 89 QLHE---QLDEHGYS 100 (438)
T ss_pred HHHH---HHHHcCCE
Confidence 6654 45566765
No 392
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.38 E-value=5.6e+02 Score=24.21 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=69.6
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCC-CCEEEeccccccccCccCCCCCCCcccCCceEEee----eCCcEEE
Q 021963 169 PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIR----EGSDITL 243 (305)
Q Consensus 169 d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~----~g~dv~I 243 (305)
.+.++..-.+|.|+.-+...++..-+-..+..+ +++.+ ..|+-|..++.- .|+|+.|
T Consensus 12 ~~~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~------------------~~FpDGE~~v~i~~~vrg~~V~i 73 (330)
T PRK02812 12 QLPLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIR------------------KRFADGELYVQIQESIRGCDVYL 73 (330)
T ss_pred CCccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEE------------------EECCCCCEEEEeCCCCCCCEEEE
Confidence 344555666888888666666766666555421 11111 112233322211 3689999
Q ss_pred EEeCh-----hHHHHHHHHHHHHhcCCC-eEEEEeccc-----------cCCCHHHHHHHHhc--cCcEEEEeCCcc
Q 021963 244 VGWGA-----QLSIMEQACLDAEKEGIS-CELIDLKTL-----------IPWDKETVEASVRK--TGRLLPRSSGYW 301 (305)
Q Consensus 244 ia~G~-----~~~~aleAa~~L~~~Gi~-~~vI~~~~i-----------~P~d~~~i~~~~~~--~~~vvvvEe~~~ 301 (305)
|.++. ..-+.+-.++.|++.|.+ +.+|=+..- -|+..+.+.+.+.. .++|+++|-|..
T Consensus 74 vqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~ 150 (330)
T PRK02812 74 IQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSA 150 (330)
T ss_pred ECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCch
Confidence 99853 344555677788877774 666644321 26677777777765 579999999975
No 393
>TIGR03586 PseI pseudaminic acid synthase.
Probab=26.26 E-value=2.8e+02 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.8
Q ss_pred EEEEEeCh-hHHHHHHHHHHHHhcCC-CeEEEEeccccCCCHH
Q 021963 241 ITLVGWGA-QLSIMEQACLDAEKEGI-SCELIDLKTLIPWDKE 281 (305)
Q Consensus 241 v~Iia~G~-~~~~aleAa~~L~~~Gi-~~~vI~~~~i~P~d~~ 281 (305)
=+|+++|. +..+...|++.+++.|. ++.+.++.+-.|-+.+
T Consensus 136 PvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~ 178 (327)
T TIGR03586 136 PIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLE 178 (327)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcc
Confidence 34567774 46777888888877776 5777777666665544
No 394
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=26.15 E-value=1.3e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 248 AQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 248 ~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
..-..|..|.+.|++.|++.+++|+..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 4457899999999999999999999884
No 395
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=26.13 E-value=2.6e+02 Score=24.00 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=22.5
Q ss_pred eChhHHHHHHHHHHHHhc-CCCeEEEEeccc
Q 021963 246 WGAQLSIMEQACLDAEKE-GISCELIDLKTL 275 (305)
Q Consensus 246 ~G~~~~~aleAa~~L~~~-Gi~~~vI~~~~i 275 (305)
+|.+-..|..+++.+++. |.++++++++..
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~ 41 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPET 41 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 455667777777778764 999999998654
No 396
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=26.13 E-value=1.5e+02 Score=27.37 Aligned_cols=42 Identities=31% Similarity=0.251 Sum_probs=32.8
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHH
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV 287 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~ 287 (305)
+.+|+=+|-||.|...|++|+..+.+.+ -+.++|++..+..-
T Consensus 137 ~nSDIDfVVYG~~~~~aRea~~~~~e~~---------~l~~ldd~~W~~iy 178 (315)
T COG1665 137 ENSDIDFVVYGQMWFRAREAILDAIEDF---------PLGELDDAEWERIY 178 (315)
T ss_pred CCCCceEEEEcHHHHHHHHHHHhhhhcc---------CccCcCHHHHHHHH
Confidence 5679999999999999999998877654 46777877764433
No 397
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=26.10 E-value=74 Score=27.83 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=14.7
Q ss_pred CCcEEEe--eCCHHHHHHHHHHhHhCCCCEEE
Q 021963 177 PGLKVVI--PRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 177 P~l~V~~--P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
|+-.++. +.+.++....+....+..+-|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 76 (229)
T TIGR01465 45 PGAEVVNSAGMSLEEIVDIMSDAHREGKLVVR 76 (229)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3444443 44556666666555544434444
No 398
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=26.04 E-value=1.2e+02 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhc-CCCeE
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKE-GISCE 268 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~-Gi~~~ 268 (305)
...|+|.++|.....|+..+..++++ ++.++
T Consensus 61 ~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~ 92 (144)
T PF12328_consen 61 SEEVTVKGTGKAIEKALSLALWFQRKKGYKVE 92 (144)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT---EE
T ss_pred ccEEEEEeccHHHHHHHHHHHHHhhcCCeEEE
Confidence 46899999999999999999999765 67654
No 399
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.81 E-value=98 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI 270 (305)
+.+++.|+++|.....|..+.-.|.+-|..+...
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~ 37 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVIS 37 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHhcCcceec
Confidence 4568999999999999999998887666554443
No 400
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.71 E-value=82 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=27.4
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.|++|+||+.|.. .+.||..|...|++|.|++-.
T Consensus 305 ~gkkVaVIGsGPA---GLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPS---GLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHH---HHHHHHHHHHCCCeEEEEeeC
Confidence 4789999999974 445677788889999999853
No 401
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=25.60 E-value=1.7e+02 Score=27.08 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=25.8
Q ss_pred cCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 263 EGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 263 ~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
-++.+-++|. +=.+++.+.+.++.+++++|+-|=+.
T Consensus 131 ~~lpi~lYn~-~g~~l~~~~l~~L~~~~pni~giK~s 166 (303)
T PRK03620 131 TDLGVIVYNR-DNAVLTADTLARLAERCPNLVGFKDG 166 (303)
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 3778888883 33578888888877677777776554
No 402
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.57 E-value=1.9e+02 Score=28.42 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.1
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++.+++|++.|.. .+++++.|.+.|.++.++|...
T Consensus 15 ~~~~v~viG~G~~---G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVS---GFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHCCCEEEEEeCCc
Confidence 4567999999884 3446778888899999998653
No 403
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=25.48 E-value=2.8e+02 Score=21.70 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.3
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+++|++.|......+++++.+--+.-++..+++..
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~ 37 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVP 37 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCC
Confidence 47899999999999999998753333577777544
No 404
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=25.45 E-value=1.3e+02 Score=25.70 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=25.7
Q ss_pred cEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEec
Q 021963 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 240 dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+++|.-+|+. ...+.+.++.|++.|.++.||=-+
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 4677777764 577778889998889888877544
No 405
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.38 E-value=1.1e+02 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=24.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhc-CCCeEEEE
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKE-GISCELID 271 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~-Gi~~~vI~ 271 (305)
+.++++|.....|......|.+. |+++.++.
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~ 32 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALI 32 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeC
Confidence 46889999999999988888877 77776553
No 406
>PRK04148 hypothetical protein; Provisional
Probab=25.25 E-value=1.1e+02 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+.+++.|++|.....| +.|.+.|.++..+|..
T Consensus 17 ~~kileIG~GfG~~vA----~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIGFYFKVA----KKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEecCCHHHH----HHHHHCCCEEEEEECC
Confidence 4579999999544443 4566779999999854
No 407
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.22 E-value=1.4e+02 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=27.8
Q ss_pred CcEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 239 ~dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
++++|..+|+. ...+.+.++.|++.|.++.||=-++
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 45778888874 5778889999998899888875443
No 408
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=25.21 E-value=1.5e+02 Score=24.54 Aligned_cols=54 Identities=7% Similarity=-0.114 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc-----cCcEEEEeCCcccc
Q 021963 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLPRSSGYWRF 303 (305)
Q Consensus 249 ~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~-----~~~vvvvEe~~~~~ 303 (305)
+...+.+|.+.|++.||+.+.+|+.. .+=-.+.|++.+.. +-..|+|...+.++
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~-~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG 73 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSM-DSGFREELRELLGAELKAVSLPRVFVDGRYLGG 73 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCCCCCEEEECCEEEec
Confidence 57889999999999999999999874 22112345454332 22345565544443
No 409
>PRK05920 aromatic acid decarboxylase; Validated
Probab=25.13 E-value=1.4e+02 Score=26.21 Aligned_cols=35 Identities=14% Similarity=-0.129 Sum_probs=26.2
Q ss_pred CCcEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEe
Q 021963 238 GSDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 238 g~dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
+++++|.-+|+. ...+.+.++.|.+.|.++.+|=-
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T 38 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLVIS 38 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456777777764 57788888899888988877743
No 410
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=25.06 E-value=1.3e+02 Score=26.21 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=29.8
Q ss_pred eCCcEEEEEeChh-HHH-HHHHHHHHHhcCCCeEEEEecccc
Q 021963 237 EGSDITLVGWGAQ-LSI-MEQACLDAEKEGISCELIDLKTLI 276 (305)
Q Consensus 237 ~g~dv~Iia~G~~-~~~-aleAa~~L~~~Gi~~~vI~~~~i~ 276 (305)
+|+++++--+|+. ... +.+.++.|.+.|.++.||=-+.-.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 4667888778875 455 588899999999999888654433
No 411
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.00 E-value=1.8e+02 Score=28.49 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhccCcEEEEeCCc
Q 021963 278 WDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
.|.+.|.+.+++++-.++++..+
T Consensus 166 ~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 166 LDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred cCHHHHHHHHHHcCCEEEEECCC
Confidence 78888988888776555554443
No 412
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=24.96 E-value=1.1e+02 Score=23.04 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.2
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcC
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEG 264 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~G 264 (305)
+.|.+++|.+.|.--..|+++...|-+.|
T Consensus 58 ~~G~~i~v~~~G~De~~A~~~l~~~~~~~ 86 (90)
T PRK10897 58 AKGRQIEVEATGPQEEEALAAVIALFNSG 86 (90)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHhc
Confidence 57889999999999999999888765444
No 413
>PRK14727 putative mercuric reductase; Provisional
Probab=24.71 E-value=1.6e+02 Score=29.04 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecccc-CCCHH
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI-PWDKE 281 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~-P~d~~ 281 (305)
.++++||+.|. .++|.+..|.+.|.++.+|....+- ++|.+
T Consensus 188 ~k~vvVIGgG~---iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~ 229 (479)
T PRK14727 188 PASLTVIGSSV---VAAEIAQAYARLGSRVTILARSTLLFREDPL 229 (479)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCEEEEEEcCCCCCcchHH
Confidence 46799999885 5777888888889999999765433 35544
No 414
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=24.61 E-value=7.4e+02 Score=25.77 Aligned_cols=78 Identities=8% Similarity=0.007 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhcccccCCCcccceeEEEcCCcCCCCCCCCC--CchHH-HHHccCCCcEEEee---CCHHHHHHHHHHh
Q 021963 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSC 197 (305)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~v~~lv~~~~~g~~~~~g~~h--s~~d~-a~~~~iP~l~V~~P---~d~~e~~~~l~~a 197 (305)
..+|-+. .++.++ ++. -++++...+..- ++.+. ..+++ ..+++. |+.++.- .|..++..++..+
T Consensus 158 ~~~EA~~-~A~~~~------L~n-Li~ivd~N~~~i-~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a 227 (653)
T TIGR00232 158 ISYEVAS-LAGHLK------LGK-LIVLYDSNRISI-DGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEA 227 (653)
T ss_pred HHHHHHH-HHHHhC------CCc-EEEEEeCCCeee-ccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHH
Confidence 4677655 344444 342 233344444322 22222 13444 356666 7777764 3555666666666
Q ss_pred HhC-CCCEEEecccc
Q 021963 198 IRD-PNPVVFFEPKW 211 (305)
Q Consensus 198 ~~~-~~Pv~i~~~~~ 211 (305)
-+. ++|++|.....
T Consensus 228 ~~~~~~P~~I~~~T~ 242 (653)
T TIGR00232 228 KASKDKPTLIEVTTT 242 (653)
T ss_pred HhCCCCCEEEEEEee
Confidence 554 48999965443
No 415
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=24.56 E-value=1.5e+02 Score=22.51 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred EEEEEeC----hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhc
Q 021963 241 ITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK 289 (305)
Q Consensus 241 v~Iia~G----~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~ 289 (305)
+.++-.| +....+-+|.+.|++.|++..+=-+.|.---|.+.+.+.+++
T Consensus 3 i~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~ 55 (92)
T PF01910_consen 3 ISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKE 55 (92)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHH
Confidence 4555554 455667778889999999999988888887777777666654
No 416
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=24.47 E-value=2e+02 Score=28.18 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=40.4
Q ss_pred CcEEEEEeC----hhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCC
Q 021963 239 SDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 239 ~dv~Iia~G----~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
.++.|+..+ .....|.+.++.|++.|+.+.+ |.+. ..+..+.-.....+.+.+|+|-+.
T Consensus 346 ~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~-D~~~-~~lg~ki~~a~~~giP~~iiVG~~ 408 (439)
T PRK12325 346 FKVGIINLKQGDEACDAACEKLYAALSAAGIDVLY-DDTD-ERPGAKFATMDLIGLPWQIIVGPK 408 (439)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHhHHHHHHHHcCCCEEEEECCc
Confidence 377888772 3457788888999999999886 5565 455554333345577778887544
No 417
>PRK13685 hypothetical protein; Provisional
Probab=24.44 E-value=2e+02 Score=26.88 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCeEEEEeccc------------cCCCHHHHHHHHhccC-cEEEEe
Q 021963 254 EQACLDAEKEGISCELIDLKTL------------IPWDKETVEASVRKTG-RLLPRS 297 (305)
Q Consensus 254 leAa~~L~~~Gi~~~vI~~~~i------------~P~d~~~i~~~~~~~~-~vvvvE 297 (305)
.++++.+++.|+.+-+|-+.+- .++|++.+++.+..++ +.+.++
T Consensus 218 ~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~ 274 (326)
T PRK13685 218 YTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAA 274 (326)
T ss_pred HHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcC
Confidence 4556666677888777777763 2578888888888775 444443
No 418
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=24.41 E-value=2.1e+02 Score=26.77 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=11.1
Q ss_pred CCHHHHHHHHhccCcEEEEeC
Q 021963 278 WDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe 298 (305)
.|.+.|.+.+++++.+++|+-
T Consensus 156 ~pi~~I~~~~~~~~~~~~vD~ 176 (371)
T PF00266_consen 156 NPIEEIAKLAHEYGALLVVDA 176 (371)
T ss_dssp SSHHHHHHHHHHTTSEEEEE-
T ss_pred eeeceehhhhhccCCceeEec
Confidence 345555555555555555553
No 419
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=24.33 E-value=1.1e+02 Score=25.22 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=31.3
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCC---CeEEEEeccccCCCHHHHHHHH---hccCcEEEEeCC
Q 021963 243 LVGWGAQL----SIMEQACLDAEKEGI---SCELIDLKTLIPWDKETVEASV---RKTGRLLPRSSG 299 (305)
Q Consensus 243 Iia~G~~~----~~aleAa~~L~~~Gi---~~~vI~~~~i~P~d~~~i~~~~---~~~~~vvvvEe~ 299 (305)
|+++|+.. .....++++|++... .++++|..+.- .+.+...+ .+.+++|+|+--
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~~~---~~~~~~~~~~~~~~d~viivDA~ 65 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGTGA---PHLLFTLLDEESKPKKIIIVDAI 65 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCCcH---HHHHHHHHhccCCCCEEEEEEec
Confidence 56666655 245667777766532 37788877742 22222222 247788888763
No 420
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=24.32 E-value=1.6e+02 Score=28.76 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=30.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec-cccC-CCH
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK-TLIP-WDK 280 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~-~i~P-~d~ 280 (305)
.++++||+.|. .++|.+..|.+.|.++.++... .+.| +|.
T Consensus 166 ~~~vvIIGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~ 207 (463)
T TIGR02053 166 PESLAVIGGGA---IGVELAQAFARLGSEVTILQRSDRLLPREEP 207 (463)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEEcCCcCCCccCH
Confidence 36799998885 5777888888889999999865 3433 444
No 421
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.23 E-value=7.1e+02 Score=24.67 Aligned_cols=118 Identities=9% Similarity=0.002 Sum_probs=71.8
Q ss_pred CchHHHHHccCCCcEEEeeCCHHHHHHHHHHhHhCC-CCEEEeccccccccCccCCCCCCCcccCCceEEee----eCCc
Q 021963 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIR----EGSD 240 (305)
Q Consensus 166 s~~d~a~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~----~g~d 240 (305)
+.|+--+=....+|.|+.-+...++..-+-..+..+ +++-+ ..|+-|...+.- .|+|
T Consensus 107 ~~~~~~~~~~~~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~------------------~rFpDGE~~Vri~e~VrG~d 168 (439)
T PTZ00145 107 SEEKRPFEKKMENAILFSGSSNPLLSKNIADHLGTILGRVHL------------------KRFADGEVSMQFLESIRGKD 168 (439)
T ss_pred ccccCchhhccCCeEEEECCCCHHHHHHHHHHhCCCceeeEE------------------EECCCCCEEEEECCCcCCCe
Confidence 555555545678898997666667776666665521 11111 112233322211 4689
Q ss_pred EEEEEeChh-----HHHHHHHHHHHHhcCC-CeEEEEeccc-----------cCCCHHHHHHHHhc--cCcEEEEeCCcc
Q 021963 241 ITLVGWGAQ-----LSIMEQACLDAEKEGI-SCELIDLKTL-----------IPWDKETVEASVRK--TGRLLPRSSGYW 301 (305)
Q Consensus 241 v~Iia~G~~-----~~~aleAa~~L~~~Gi-~~~vI~~~~i-----------~P~d~~~i~~~~~~--~~~vvvvEe~~~ 301 (305)
+.||.+... +-+.+-.++.|++.|. ++.+|=+..- -|+....+.+++.. .++|+++|-|..
T Consensus 169 V~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~ 248 (439)
T PTZ00145 169 VYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSG 248 (439)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChH
Confidence 999997542 4455567778877776 4556544221 26777778788776 489999999864
No 422
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=24.20 E-value=1e+02 Score=27.35 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=23.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
|++||+.|..--. ++-.|++.|+++.||+-..
T Consensus 2 dv~IiGaG~aGl~---~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGAS---AAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHH---HHHHHHHCCCeEEEEeccC
Confidence 7899998874332 2334667799999999764
No 423
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=24.10 E-value=3.5e+02 Score=25.12 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=46.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCCCC---cccCCc-eEEeeeCCcEEEEEeChhHHHHHH
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSE-AEVIREGSDITLVGWGAQLSIMEQ 255 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~---~~~~gk-~~~~~~g~dv~Iia~G~~~~~ale 255 (305)
.++.|.|.+|+..+++++-+.+.|++++-.- +.. .+.+..+ .+.+++ ...+....+.+.+..|.......+
T Consensus 38 ~~v~p~~~edl~~~v~~a~~~~ip~~vlGgG----SNl-lv~d~g~~gvVI~l~~~~~~i~~~~~~v~v~AG~~~~~L~~ 112 (302)
T PRK14652 38 LLVRPADPDALSALLRAVRELGVPLSILGGG----ANT-LVADAGVRGVVLRLPQDFPGESTDGGRLVLGAGAPISRLPA 112 (302)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCcEEEEcCC----cce-eecCCCEeeEEEEecCCcceEEecCCEEEEECCCcHHHHHH
Confidence 5889999999999999999999999984211 111 0111111 111211 111223345677888887776554
Q ss_pred HHHHHHhcCCC
Q 021963 256 ACLDAEKEGIS 266 (305)
Q Consensus 256 Aa~~L~~~Gi~ 266 (305)
. +.++|+.
T Consensus 113 ~---~~~~GL~ 120 (302)
T PRK14652 113 R---AHAHGLV 120 (302)
T ss_pred H---HHHcCCc
Confidence 4 3445654
No 424
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=23.98 E-value=1.5e+02 Score=29.20 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=43.7
Q ss_pred EEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEe
Q 021963 242 TLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRS 297 (305)
Q Consensus 242 ~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvE 297 (305)
.||+.=..-.-+++.++.|+++|++++.+-+..---.|.+.+++.++...+++.|.
T Consensus 133 ~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~ 188 (428)
T KOG1549|consen 133 HIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIM 188 (428)
T ss_pred eEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEE
Confidence 67777677777888999999999777777666555677788999998877787764
No 425
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=23.88 E-value=2e+02 Score=29.74 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=38.9
Q ss_pred CCcEEEEEeCh--hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHH-HhccCcEEEEeC
Q 021963 238 GSDITLVGWGA--QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLPRSS 298 (305)
Q Consensus 238 g~dv~Iia~G~--~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~-~~~~~~vvvvEe 298 (305)
..++.|+..+. ....|++.++.|+++|+++.+ |... +.+.+ .++.. ..+.+-+++|-+
T Consensus 541 p~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~vei-d~~~-~sl~k-q~k~A~k~g~~~~iiiG~ 601 (639)
T PRK12444 541 PVQVKVIPVSNAVHVQYADEVADKLAQAGIRVER-DERD-EKLGY-KIREAQMQKIPYVLVIGD 601 (639)
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHH-HHHHHHHcCCCEEEEEcc
Confidence 34788888886 567899999999999999987 4433 33433 34333 234566777654
No 426
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.86 E-value=2.8e+02 Score=27.59 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=34.0
Q ss_pred CcEEEEE---eChhHHHHHHHHHHHHhc--CCCeEEEEeccccCCCHHHHHHHHhccCcEEEE
Q 021963 239 SDITLVG---WGAQLSIMEQACLDAEKE--GISCELIDLKTLIPWDKETVEASVRKTGRLLPR 296 (305)
Q Consensus 239 ~dv~Iia---~G~~~~~aleAa~~L~~~--Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvv 296 (305)
++++|+- ||++-..|..+++.|++. |+++.+.++... |.+.+...+.+.+.|++-
T Consensus 252 ~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~---~~~~i~~~~~~ad~vilG 311 (479)
T PRK05452 252 DRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS---DKNEILTNVFRSKGVLVG 311 (479)
T ss_pred CcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCC---CHHHHHhHHhhCCEEEEE
Confidence 4555544 466666677777777765 678888887654 455554444455656543
No 427
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=23.85 E-value=3.4e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccccCC-CH--------HHHHHHHhccCcEEEEeCCc
Q 021963 251 SIMEQACLDAEKEGISCELIDLKTLIPW-DK--------ETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 251 ~~aleAa~~L~~~Gi~~~vI~~~~i~P~-d~--------~~i~~~~~~~~~vvvvEe~~ 300 (305)
..+..+++.+.++|.+++++|+.-+ |+ |. ..+.+.++..+.+|++-.-|
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~l-Pl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY 101 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGL-PLPDAAHADHPKVRELRQLSEWSEGQVWCSPER 101 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccC-CCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc
Confidence 3444555667767999999998755 43 21 23556677777777665433
No 428
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=23.75 E-value=7.7e+02 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 021963 180 KVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 206 (305)
+=+.-.+++|+...++++.+. ++|++|
T Consensus 528 kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 528 KGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred CceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 344455999999999999986 599988
No 429
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.68 E-value=1.7e+02 Score=28.53 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.++++||+.|. .++|.+..|++.|.++.+|+..
T Consensus 172 ~~~vvVvGgG~---~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 172 PKSLVVIGGGY---IGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEEcC
Confidence 46789999885 4667788888889999999863
No 430
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=23.59 E-value=2.1e+02 Score=29.02 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=39.1
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHH-HhccCcEEEEeC
Q 021963 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~-~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~-~~~~~~vvvvEe 298 (305)
.++.|+..+. ....|++.++.|++.|+++.+ |.+. ..+.. .++.. ..+.+-+++|-+
T Consensus 477 ~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~-d~~~-~~l~k-k~~~A~~~g~p~~iivG~ 535 (575)
T PRK12305 477 VQVVIIPVADAHNEYAEEVAKKLRAAGIRVEV-DTSN-ERLNK-KIRNAQKQKIPYMLVVGD 535 (575)
T ss_pred ccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHH-HHHHHHhcCCCEEEEEec
Confidence 4688998886 457899999999999999987 4444 34544 34433 334566777644
No 431
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=23.56 E-value=1.3e+02 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=22.2
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.|++||+.|..- +-|+..|.++|+++.++.-.
T Consensus 18 ~DV~IVGaGpaG---l~aA~~La~~g~kV~v~E~~ 49 (230)
T PF01946_consen 18 YDVAIVGAGPAG---LTAAYYLAKAGLKVAVIERK 49 (230)
T ss_dssp ESEEEE--SHHH---HHHHHHHHHHTS-EEEEESS
T ss_pred CCEEEECCChhH---HHHHHHHHHCCCeEEEEecC
Confidence 589999999843 44566788889999999843
No 432
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=23.52 E-value=1.3e+02 Score=25.09 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCcEEEEEe--ChhHHHHHHHHHHHHhcCCCeEEEEecccc-CCCHHHH---HHHHhccCcEEEEeCC
Q 021963 238 GSDITLVGW--GAQLSIMEQACLDAEKEGISCELIDLKTLI-PWDKETV---EASVRKTGRLLPRSSG 299 (305)
Q Consensus 238 g~dv~Iia~--G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~-P~d~~~i---~~~~~~~~~vvvvEe~ 299 (305)
|..+++|+- +.+++..+.++. .-|.++.++.+..+. |.+.+.+ ++.+++.+.-++++++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~---~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 66 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLA---KFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDD 66 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHH---HTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESS
T ss_pred CCEEEEECCCCChHHHHHHHHHH---HcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 556777773 455555555544 448899999998865 5544444 3444444444445443
No 433
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=23.38 E-value=1e+02 Score=25.83 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~ 271 (305)
+|++++||+.|... .+++..|.+.|-++.++.
T Consensus 166 ~~k~V~VVG~G~SA---~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVVGGGNSA---VDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp TTSEEEEE--SHHH---HHHHHHHTTTCSEEEEEE
T ss_pred CCCcEEEEcChHHH---HHHHHHHHhhCCEEEEEe
Confidence 46789999999754 456667777787777664
No 434
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=23.31 E-value=1.3e+02 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEE
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI 270 (305)
.++++||-|+.+...+-.++.|.+.+.++.++
T Consensus 99 ~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~ 130 (281)
T PRK06222 99 GTVVCVGGGVGIAPVYPIAKALKEAGNKVITI 130 (281)
T ss_pred CeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999998888888888887777666655
No 435
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=23.28 E-value=5.1e+02 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=21.6
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEe
Q 021963 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (305)
Q Consensus 175 ~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 207 (305)
.+|.+. +.-.|+.++...++.+++ .++|++|-
T Consensus 189 G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIe 224 (293)
T cd02000 189 GIPGIR-VDGNDVLAVYEAAKEAVERARAGGGPTLIE 224 (293)
T ss_pred CCCEEE-ECCCCHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 455543 334467888888888774 47899993
No 436
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=23.27 E-value=3.6e+02 Score=21.06 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=29.7
Q ss_pred cEEEEEeChhHHHHHHHH----HHHHhcC--CCeEEEEeccccCCCHHHHHHHHh-ccCcEEEE
Q 021963 240 DITLVGWGAQLSIMEQAC----LDAEKEG--ISCELIDLKTLIPWDKETVEASVR-KTGRLLPR 296 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa----~~L~~~G--i~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvv 296 (305)
.++|++.|+.-..+.+.. +.+++.+ ..+.+--+..-.|--.+.+.+..+ ..++|+++
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 467888888765554443 3444432 223322233234655666766554 34566654
No 437
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.97 E-value=3e+02 Score=25.64 Aligned_cols=28 Identities=11% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
.++.|.|.+|+..+++++-+++-|++++
T Consensus 39 ~~v~p~~~edv~~~v~~a~~~~ip~~vl 66 (307)
T PRK13906 39 FYITPTKNEEVQAVVKYAYQNEIPVTYL 66 (307)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5889999999999999999999999984
No 438
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.93 E-value=2.6e+02 Score=24.29 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=32.6
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeC
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe 298 (305)
+|..++||+-|..... .++.|-+.|-++.||+... . +.+.+... .+++-.++.
T Consensus 8 ~gk~vlVvGgG~va~r---k~~~Ll~~ga~VtVvsp~~----~-~~l~~l~~-~~~i~~~~~ 60 (205)
T TIGR01470 8 EGRAVLVVGGGDVALR---KARLLLKAGAQLRVIAEEL----E-SELTLLAE-QGGITWLAR 60 (205)
T ss_pred CCCeEEEECcCHHHHH---HHHHHHHCCCEEEEEcCCC----C-HHHHHHHH-cCCEEEEeC
Confidence 5678999998886533 3455667799999998642 2 44444433 334544443
No 439
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=22.92 E-value=2.1e+02 Score=28.82 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=37.6
Q ss_pred CcEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHH-HhccCcEEEEeC
Q 021963 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~-~~~~~~vvvvEe 298 (305)
.++.|+..+.. ...|++.++.|+++|++|.+ |.+. +.+.. .++.. ..+.+.+|++-+
T Consensus 471 ~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~-d~~~-~sl~~-q~k~A~~~g~~~~iiiG~ 529 (563)
T TIGR00418 471 VQVVVIPVNERHLDYAKKVAQKLKKAGIRVDV-DDRN-ERLGK-KIREAQKQKIPYMLVVGD 529 (563)
T ss_pred ceEEEEEccchHHHHHHHHHHHHHHcCCEEEE-ECCC-CCHHH-HHHHHHhcCCCEEEEEch
Confidence 36888888864 57789999999999999987 4443 33433 34333 334566777643
No 440
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.92 E-value=1.1e+02 Score=27.69 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
||+||+-|..-. -+|-.|++.|+++.||+-..-
T Consensus 3 dV~IvGaG~aGl---~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGL---AAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHH---HHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHH---HHHHHHHhcccccccchhccc
Confidence 789999887433 245568889999999997653
No 441
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.89 E-value=1.4e+02 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCeEEEE
Q 021963 254 EQACLDAEKEGISCELID 271 (305)
Q Consensus 254 leAa~~L~~~Gi~~~vI~ 271 (305)
.+.-+.|+++|++++|..
T Consensus 21 ~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 21 EEIKELCQSHNIPVELIQ 38 (94)
T ss_pred HHHHHHHHHCCCeEEEEE
Confidence 444567788999988887
No 442
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=22.85 E-value=2.4e+02 Score=24.99 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=35.3
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeCCccc
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSSGYWR 302 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe~~~~ 302 (305)
.++.||- |...-.+ |+.+| |....-+.+.|+.+-+.+.++..+....+++++.+...+
T Consensus 95 ~~v~iIP-giSS~q~--a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~~ 152 (210)
T COG2241 95 EEVEIIP-GISSVQL--AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDFG 152 (210)
T ss_pred cceEEec-ChhHHHH--HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCCC
Confidence 4566665 4333222 33344 665555555555578888888888777788887776543
No 443
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=22.82 E-value=1.4e+02 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=15.4
Q ss_pred CCCeEEEEecc-ccCCCHHHHHH---HHhccCcEEEE
Q 021963 264 GISCELIDLKT-LIPWDKETVEA---SVRKTGRLLPR 296 (305)
Q Consensus 264 Gi~~~vI~~~~-i~P~d~~~i~~---~~~~~~~vvvv 296 (305)
+.+.-+|++.- |+|++ .|.+ .+...+-++++
T Consensus 127 ~hDF~~ISLSDlLtPwe--~IekRl~aAA~adfVi~~ 161 (249)
T COG1010 127 GHDFCVISLSDLLTPWE--VIEKRLRAAAEADFVIAL 161 (249)
T ss_pred ccceEEEEhHhcCCcHH--HHHHHHHHHhhCCEEEEE
Confidence 45666677664 34554 4433 23344555544
No 444
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=22.82 E-value=2.7e+02 Score=26.39 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=37.9
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc-------------cCCCHHHHHHHHhccCcEEEEeC
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL-------------IPWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i-------------~P~d~~~i~~~~~~~~~vvvvEe 298 (305)
+.+.||+.|........++..| |+++-++|...- ..-|.+.+.+.++.. .+||.|.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~-dvit~e~ 71 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQC-DVITYEF 71 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcC-CEEEeCc
Confidence 4588999997666555555544 999999887431 124567787877755 4778774
No 445
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=22.78 E-value=4.1e+02 Score=22.62 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=30.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcC--CCeEEE-Eecccc-CCCHHHHHHHHhc
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEG--ISCELI-DLKTLI-PWDKETVEASVRK 289 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~G--i~~~vI-~~~~i~-P~d~~~i~~~~~~ 289 (305)
..++++||.|+.+...+..++.+.+.+ -++.++ ..++-. .+-.+.|.+..++
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~ 150 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA 150 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHh
Confidence 457899999998877777777665544 345544 333322 1223455554443
No 446
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.76 E-value=1e+02 Score=31.90 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=26.8
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.|.+++||+.|..- +.|+..|...|.++.|++-.
T Consensus 326 ~~~~VaIIGaGpAG---LsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAG---LACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHH---HHHHHHHHHCCCeEEEEecC
Confidence 57899999999853 34666777889999999853
No 447
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.72 E-value=4.1e+02 Score=24.51 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=45.7
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCccCCCCC---CCcccCCc-eEEeeeCCcEEEEEeChhHHHHHH
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPED---DYMLPLSE-AEVIREGSDITLVGWGAQLSIMEQ 255 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~---~~~~~~gk-~~~~~~g~dv~Iia~G~~~~~ale 255 (305)
.++.|.+.+|+..+++++-+++.|+.++-.. +.. .+.+. ...+...+ .+.+......+-+..|..+....+
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~GgG----snl-l~~d~g~~gvvI~l~~~l~~i~~~~~~v~v~aG~~~~~L~~ 107 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLGNG----SNL-LVRDGGIRGVVIRLGKGLNEIEVEGNRITAGAGAPLIKLAR 107 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEeCC----ceE-EecCCCcceEEEEecCCcceEEecCCEEEEECCCcHHHHHH
Confidence 5788999999999999999889999985221 110 01111 11111222 222222344566788887776554
Q ss_pred HHHHHHhcCC
Q 021963 256 ACLDAEKEGI 265 (305)
Q Consensus 256 Aa~~L~~~Gi 265 (305)
. |.++|.
T Consensus 108 ~---l~~~Gl 114 (298)
T PRK13905 108 F---AAEAGL 114 (298)
T ss_pred H---HHHcCC
Confidence 4 445565
No 448
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=22.56 E-value=2.4e+02 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCcCCCCCCCCCCchHHHHH-ccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 021963 154 PYGAVGHGGHYHSQSPEAFF-CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (305)
Q Consensus 154 ~~g~~~~~g~~hs~~d~a~~-~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 206 (305)
++|++|+.+.|-..=-..++ ...+| .||++-++++....++.+-..++-.+|
T Consensus 49 sGGGSGHEPah~GyVG~GmLdAav~G-~VFaSPs~~qI~~ai~av~~~~GvL~i 101 (329)
T PRK14483 49 SGGGSGHEPAHIGYVGKGMLTAAVNG-SIFTPPTAEQILAATRLVPKGKGVFFI 101 (329)
T ss_pred ecCCccccccccccccCCccceeEec-cccCCCCHHHHHHHHHhhcCCCCEEEE
Confidence 35666777665542111233 33556 588888999999998765544554444
No 449
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=22.55 E-value=1.1e+02 Score=30.39 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=27.1
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
.+.+++||+.|. ..+.|+..|.+.|.++.|++-.
T Consensus 142 ~~~~V~IIGaG~---aGl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGP---AGLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcH---HHHHHHHHHHHcCCeEEEEecC
Confidence 456899999985 4566778888889999999754
No 450
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=22.40 E-value=1.1e+02 Score=27.55 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=15.4
Q ss_pred eEEEEeccccCC-CHHHHHHHHhccCcEEEEeC
Q 021963 267 CELIDLKTLIPW-DKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 267 ~~vI~~~~i~P~-d~~~i~~~~~~~~~vvvvEe 298 (305)
+.++.++--.|. +.+.+.+.++....+++++.
T Consensus 140 ~~v~s~hG~~~~~~~~~l~~~~~~~~t~vi~~~ 172 (257)
T PRK15473 140 LIITRMEGRTPVPAREQLESFASHQTSMAIFLS 172 (257)
T ss_pred EEEEeecCCCCCCchhhHHHHhcCCCeEEEECC
Confidence 334444433333 23456555555556666653
No 451
>PTZ00052 thioredoxin reductase; Provisional
Probab=22.39 E-value=1.8e+02 Score=28.92 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=34.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc-cCCCHH---HHHHHHhcc
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL-IPWDKE---TVEASVRKT 290 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i-~P~d~~---~i~~~~~~~ 290 (305)
.++++||+.|. .++|.+..|.+.|.+|++|....+ ..+|.+ .+.+.+++.
T Consensus 182 ~~~vvIIGgG~---iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~ 235 (499)
T PTZ00052 182 PGKTLIVGASY---IGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQ 235 (499)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHc
Confidence 35789999885 567788888888999999975433 346653 344555443
No 452
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.33 E-value=1.6e+02 Score=27.48 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=32.5
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLP 295 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvv 295 (305)
+|+++++|+.|..+..-+ +..|.++|..+.+.|-++- .+.+.+++.+-|++
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIs 208 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVA 208 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEE
Confidence 467888888875555544 3456677888888876652 34455555554443
No 453
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=22.30 E-value=1.8e+02 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEE
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~ 271 (305)
+.++++||.|+.+...+-.++.+.+.+.++.++.
T Consensus 97 ~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~ 130 (248)
T cd06219 97 YGTVVFVGGGVGIAPIYPIAKALKEAGNRVITII 130 (248)
T ss_pred CCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578999999888777777777666666676654
No 454
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=22.27 E-value=3.5e+02 Score=23.39 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
+|..++||+.|.+... .++.|.+.|.++.||+.
T Consensus 9 ~~k~vLVIGgG~va~~---ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGR---RAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHH---HHHHHHHCCCeEEEEcC
Confidence 5778999999987643 34556677899999974
No 455
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.10 E-value=1e+02 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.8
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
.+.+++||+.|.. .+.||..|...|.++.|++.
T Consensus 430 ~~~~V~IIGaGpA---Gl~aA~~l~~~G~~V~v~e~ 462 (752)
T PRK12778 430 NGKKVAVIGSGPA---GLSFAGDLAKRGYDVTVFEA 462 (752)
T ss_pred CCCEEEEECcCHH---HHHHHHHHHHCCCeEEEEec
Confidence 4779999999873 44577778888999999985
No 456
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.01 E-value=2.4e+02 Score=26.89 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=18.0
Q ss_pred CCHHHHHHHHhccCcEEEEeCCcc
Q 021963 278 WDKETVEASVRKTGRLLPRSSGYW 301 (305)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~ 301 (305)
.|.+.|.+.+++++.+++|++...
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a 182 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQS 182 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchh
Confidence 567788888888877777776543
No 457
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.00 E-value=2.9e+02 Score=26.99 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=29.1
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i 275 (305)
.|++++||+.|. .+++++..|...|.+|.++..+.-
T Consensus 271 ~gk~VvVIGgG~---~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGN---TAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHcCCEEEEEeecCc
Confidence 477899999995 566777778788999999988753
No 458
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.94 E-value=2e+02 Score=27.18 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=23.5
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+|+.++||+||+.-+ .-+..|++.|++|. |-++.
T Consensus 17 kgK~iaIIGYGsQG~---ahalNLRDSGlnVi-iGlr~ 50 (338)
T COG0059 17 KGKKVAIIGYGSQGH---AQALNLRDSGLNVI-IGLRK 50 (338)
T ss_pred cCCeEEEEecChHHH---HHHhhhhhcCCcEE-EEecC
Confidence 567899999999654 22345888899954 44443
No 459
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.93 E-value=6.4e+02 Score=24.42 Aligned_cols=75 Identities=9% Similarity=-0.039 Sum_probs=48.9
Q ss_pred cccCCceEEee----eCCcEEEEEeCh---------------h----HHHHHHHHHHHHhcCC-CeEEEEecccc-----
Q 021963 226 MLPLSEAEVIR----EGSDITLVGWGA---------------Q----LSIMEQACLDAEKEGI-SCELIDLKTLI----- 276 (305)
Q Consensus 226 ~~~~gk~~~~~----~g~dv~Iia~G~---------------~----~~~aleAa~~L~~~Gi-~~~vI~~~~i~----- 276 (305)
.|+-|...+.- .|+|+.||.+.. . +-+.+-.++.|+ .|. ++.+|=+..-+
T Consensus 61 ~FpDGE~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr 139 (382)
T PRK06827 61 RFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHK 139 (382)
T ss_pred ECCCCCEEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeeccccccccc
Confidence 35555544322 378999998863 1 344455777887 776 46666443322
Q ss_pred -----CCCHHHHHHHHhc--cCcEEEEeCCcc
Q 021963 277 -----PWDKETVEASVRK--TGRLLPRSSGYW 301 (305)
Q Consensus 277 -----P~d~~~i~~~~~~--~~~vvvvEe~~~ 301 (305)
|+....+.+.+.. .++|+++|-|..
T Consensus 140 ~~~~e~itak~vA~lL~~~G~d~vitvDlHs~ 171 (382)
T PRK06827 140 RKGRESLDCALALQELEELGVDNIITFDAHDP 171 (382)
T ss_pred ccCCCCccHHHHHHHHHHcCCCeEEEecCChH
Confidence 7777777777765 589999999974
No 460
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=21.85 E-value=1.3e+02 Score=29.73 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=25.0
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
.+|+||+-|.. .+++|..|++.|+++.|+..+.
T Consensus 1 ~~VvVIGgGlA---GleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLA---GSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHH---HHHHHHHHHhCCCcEEEEeccc
Confidence 36889988854 4456677878899999998643
No 461
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=21.81 E-value=3.8e+02 Score=25.77 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEecccc-ccccCccCCCCCCCcccCCceE---EeeeCCcEEEEEeC
Q 021963 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKW-LYRLSVEEVPEDDYMLPLSEAE---VIREGSDITLVGWG 247 (305)
Q Consensus 172 ~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~-l~~~~~~~~~~~~~~~~~gk~~---~~~~g~dv~Iia~G 247 (305)
..+..|. .|+.|.+.+|+..+++.|.+++.|++.|-... +... .++....-+...+-+ -+...+..+.+-.|
T Consensus 27 ~~~~~p~-~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~---~~~~~gvvl~l~~mn~i~~id~~~~~~~v~aG 102 (459)
T COG0277 27 VYRGLPL-AVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGG---AVPDGGVVLDLSRLNRILEIDPEDGTATVQAG 102 (459)
T ss_pred hhcCCCC-EEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCcccc---ccCCCcEEEEchhhcchhccCcCCCEEEEcCC
Confidence 4556666 69999999999999999999999998853221 1111 111101111111111 12334667788889
Q ss_pred hhHHHHHHHHH
Q 021963 248 AQLSIMEQACL 258 (305)
Q Consensus 248 ~~~~~aleAa~ 258 (305)
.......++++
T Consensus 103 v~l~~l~~~l~ 113 (459)
T COG0277 103 VTLEDLEKALA 113 (459)
T ss_pred ccHHHHHHHHH
Confidence 98887777654
No 462
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.76 E-value=1.3e+02 Score=24.10 Aligned_cols=32 Identities=13% Similarity=0.330 Sum_probs=22.7
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCC-eEEEE
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGIS-CELID 271 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~-~~vI~ 271 (305)
+++.++|++.|.+...+.. .|.+.|.+ +.|++
T Consensus 11 ~~~~vlviGaGg~ar~v~~---~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAA---ALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHH---HHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHH---HHHHcCCCEEEEEE
Confidence 4678889999887765544 45556877 77777
No 463
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.74 E-value=1.5e+02 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=29.3
Q ss_pred eCCcEEEEEeChh-HHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~-~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+|+++++.-+|+. ...+.+.++.|++.|.++.||=-+.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4667888888875 5778888889988898888775443
No 464
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.70 E-value=2.6e+02 Score=27.23 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=27.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+|+|.+. +....|.+|.+.|++.||+.++||+.
T Consensus 3 ~V~vys~-~~Cp~C~~aK~~L~~~gi~~~~idi~ 35 (410)
T PRK12759 3 EVRIYTK-TNCPFCDLAKSWFGANDIPFTQISLD 35 (410)
T ss_pred cEEEEeC-CCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 3555544 56788999999999999999999997
No 465
>PRK10262 thioredoxin reductase; Provisional
Probab=21.68 E-value=2.5e+02 Score=25.69 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=30.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCC
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d 279 (305)
.+++++||+.|. .+++.+..|.+.|.++.++....-.+.+
T Consensus 145 ~g~~vvVvGgG~---~g~e~A~~l~~~~~~Vtlv~~~~~~~~~ 184 (321)
T PRK10262 145 RNQKVAVIGGGN---TAVEEALYLSNIASEVHLIHRRDGFRAE 184 (321)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHhhCCEEEEEEECCccCCC
Confidence 467899999884 5677778888889999999876533444
No 466
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.66 E-value=2.4e+02 Score=27.61 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec--cccCCCHH
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK--TLIPWDKE 281 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~--~i~P~d~~ 281 (305)
+++++||+.|. .++|.+..|.+.|.++++|... -+..+|.+
T Consensus 166 ~~~vvIIGgG~---iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~ 208 (450)
T TIGR01421 166 PKRVVIVGAGY---IAVELAGVLHGLGSETHLVIRHERVLRSFDSM 208 (450)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEecCCCCCcccCHH
Confidence 46899999885 4667788888889999999854 35567754
No 467
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.56 E-value=1.3e+02 Score=25.10 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=23.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEe
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
+|..++||+-|.... .-++.|.+.|.++.||+.
T Consensus 12 ~~~~vlVvGGG~va~---rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAY---RKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEEcC
Confidence 577899999887654 234456667999999964
No 468
>PRK14012 cysteine desulfurase; Provisional
Probab=21.47 E-value=2.4e+02 Score=26.79 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 276 IPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
.+.|.+.|.+.+++++.+++++..+
T Consensus 159 ~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 159 VIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred chhhHHHHHHHHHHcCCEEEEEcch
Confidence 4567788888888877565555543
No 469
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.36 E-value=1.4e+02 Score=23.64 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=32.8
Q ss_pred cEEEEEeChhHH--HHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhcc
Q 021963 240 DITLVGWGAQLS--IMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (305)
Q Consensus 240 dv~Iia~G~~~~--~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~ 290 (305)
-+++++-|.... ...++++.|+++|+.+-.|-+.. .+.+.+.++...+
T Consensus 106 ~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~---~~~~~l~~la~~~ 155 (161)
T cd01450 106 VIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP---ADEEELREIASCP 155 (161)
T ss_pred EEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc---cCHHHHHHHhCCC
Confidence 355666665432 36677888888888888887655 5777777766654
No 470
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.32 E-value=1.5e+02 Score=23.52 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=27.9
Q ss_pred ccCCceEEeeeCCcEEEEE-eChhHHHHHHHHHHHHhcCCCeEEEE
Q 021963 227 LPLSEAEVIREGSDITLVG-WGAQLSIMEQACLDAEKEGISCELID 271 (305)
Q Consensus 227 ~~~gk~~~~~~g~dv~Iia-~G~~~~~aleAa~~L~~~Gi~~~vI~ 271 (305)
|..|....+.++.-+++++ .|.......++++.+++.|..+-+|.
T Consensus 51 ~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 51 FKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred hccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEe
Confidence 3344444455555566666 45455667888888888776665553
No 471
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.23 E-value=1.3e+02 Score=33.19 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=38.1
Q ss_pred CcEEEEEeChh-HHH-------HHHHHHHHHhcCCCeEEEEec--------------cccCCCHHHHHHHHhcc
Q 021963 239 SDITLVGWGAQ-LSI-------MEQACLDAEKEGISCELIDLK--------------TLIPWDKETVEASVRKT 290 (305)
Q Consensus 239 ~dv~Iia~G~~-~~~-------aleAa~~L~~~Gi~~~vI~~~--------------~i~P~d~~~i~~~~~~~ 290 (305)
++|.|++.|.. ..+ +.++++.|++.|+++-++|.. .+.|++.+.+.+.+++.
T Consensus 8 ~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e 81 (1066)
T PRK05294 8 KKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKE 81 (1066)
T ss_pred CEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHH
Confidence 47899999975 222 345788888899999888753 24578888888877665
No 472
>PRK06370 mercuric reductase; Validated
Probab=21.22 E-value=2e+02 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=27.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+++++||+.|. .++|.+..|.+.|.++.+++..
T Consensus 171 ~~~vvVIGgG~---~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 171 PEHLVIIGGGY---IGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred CCEEEEECCCH---HHHHHHHHHHHcCCeEEEEEcC
Confidence 56899999884 5777888888889999999864
No 473
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=21.18 E-value=1.1e+02 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=22.5
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 240 dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
|++||+.|..--. +|-.|.+.|.+|.|++-.
T Consensus 1 DvvIIGaGi~G~~---~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLS---TAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHH---HHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHH---HHHHHHHCCCeEEEEeec
Confidence 6899999975321 233466689999999876
No 474
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=21.17 E-value=2.8e+02 Score=21.63 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHhccCcEEEEeC
Q 021963 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLPRSS 298 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~~~~~vvvvEe 298 (305)
-..+.+|+.+|.++|. ...+.+.-+-- +.+.+.+.+++..++|+++-
T Consensus 13 Gqla~~aA~~l~~~~~-~~~~Cla~v~~-~~~~~~~~a~~~~~iIaIDG 59 (110)
T PF08859_consen 13 GQLANQAAVELTREGP-GEMSCLAGVGA-GVEGLVKSARSARPIIAIDG 59 (110)
T ss_pred hHHHHHHHHHHHHcCC-eeEEechhhhc-CcHHHHHHHhcCCceEEECC
Confidence 4667788888988875 55655555443 45567788888889998864
No 475
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.11 E-value=1.2e+02 Score=30.29 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=29.5
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 172 ~~~~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
..+..|. .|+.|.+.+|+..+++.|-+++-|++.|
T Consensus 51 ~~~~~p~-~Vv~P~s~eeV~~iv~~a~~~~ipv~~r 85 (499)
T PRK11230 51 AYRTRPL-LVVLPKQMEQVQALLAVCHRLRVPVVAR 85 (499)
T ss_pred ccCCCCC-EEEeeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3455665 5889999999999999999988888875
No 476
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=21.04 E-value=2.3e+02 Score=24.23 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=32.8
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCCCeEEEEeccccCCCHHHHHHHHh
Q 021963 241 ITLVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (305)
Q Consensus 241 v~Iia~G~~~----~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~~i~~~~~ 288 (305)
++|++-|..- ..+.++++.|+++||.+-+|-+... +.+.++.++.
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~---~~~el~~ia~ 160 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA---SENKLKLLAG 160 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc---cHHHHHHhcC
Confidence 4566777543 3466888899999999999998874 5666766654
No 477
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.02 E-value=1.3e+02 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=26.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
.++.|.|.+|+..+++++-+++-|++++
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v~ 66 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTFL 66 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5899999999999999999999999994
No 478
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=21.02 E-value=70 Score=31.86 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=35.0
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCCeE------EEEeccccC--------CCHHHHHHHHhccCcEEEE
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCE------LIDLKTLIP--------WDKETVEASVRKTGRLLPR 296 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~------vI~~~~i~P--------~d~~~i~~~~~~~~~vvvv 296 (305)
-+|+.|+||+||+.-+ .. +--|+..|+++. +||..+ ++ |....+.+.+++.+-|+.+
T Consensus 34 LkgKtIaIIGyGSqG~--Aq-AlNLrdSGvnVvvglr~~~id~~~-~s~~kA~~dGF~v~~~~Ea~~~ADvVviL 104 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL--NQ-GLNMRDSGLDISYALRKEAIAEKR-ASWRKATENGFKVGTYEELIPQADLVINL 104 (487)
T ss_pred hCCCEEEEEccCHHHH--HH-hCCCccccceeEEecccccccccc-chHHHHHhcCCccCCHHHHHHhCCEEEEc
Confidence 3578999999999877 22 224666688776 443332 11 2223466777777766554
No 479
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=20.97 E-value=1.9e+02 Score=19.04 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=24.8
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 241 v~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+++.+. ..-..|.++...|++.|++...+|+..
T Consensus 2 v~ly~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~ 34 (72)
T cd02066 2 VVVFSK-STCPYCKRAKRLLESLGIEFEEIDILE 34 (72)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 344443 335788899999999999999998865
No 480
>PLN02735 carbamoyl-phosphate synthase
Probab=20.95 E-value=1.8e+02 Score=32.34 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=38.6
Q ss_pred CcEEEEEeChhH-H-------HHHHHHHHHHhcCCCeEEEEec--------------cccCCCHHHHHHHHhcc
Q 021963 239 SDITLVGWGAQL-S-------IMEQACLDAEKEGISCELIDLK--------------TLIPWDKETVEASVRKT 290 (305)
Q Consensus 239 ~dv~Iia~G~~~-~-------~aleAa~~L~~~Gi~~~vI~~~--------------~i~P~d~~~i~~~~~~~ 290 (305)
+++.|++.|... . .+.++++.|++.|+.+-++|.. .+-|.+.+.+.+.+++.
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e 97 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKE 97 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHh
Confidence 478999999752 2 2456788888999999999863 25677888887777765
No 481
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=20.92 E-value=2.2e+02 Score=27.17 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=28.3
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEeccccCCCHH
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKE 281 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~i~P~d~~ 281 (305)
+++.+.||+.|.|...+. +.|.+.|++-=.|--|+..+.+.+
T Consensus 173 ~~k~vLvIGaGem~~l~a---~~L~~~g~~~i~v~nRt~~~~~~~ 214 (338)
T PRK00676 173 KKASLLFIGYSEINRKVA---YYLQRQGYSRITFCSRQQLTLPYR 214 (338)
T ss_pred cCCEEEEEcccHHHHHHH---HHHHHcCCCEEEEEcCCccccchh
Confidence 467899999999887664 467777876444444554544443
No 482
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.89 E-value=2.1e+02 Score=28.10 Aligned_cols=24 Identities=4% Similarity=-0.060 Sum_probs=17.2
Q ss_pred cCC----CHHHHHHHHhccCcEEEEeCCc
Q 021963 276 IPW----DKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 276 ~P~----d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
+|. |.+.|.+.+++++ ++++||+.
T Consensus 158 nP~~~v~Di~~I~~iA~~~g-i~livD~T 185 (432)
T PRK06702 158 NPAMNVLNFKEFSDAAKELE-VPFIVDNT 185 (432)
T ss_pred CccccccCHHHHHHHHHHcC-CEEEEECC
Confidence 576 9999988887776 55566664
No 483
>PLN02757 sirohydrochlorine ferrochelatase
Probab=20.84 E-value=2.6e+02 Score=23.27 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=34.2
Q ss_pred CCcEEEEEeChhHHHHHHHH----HHHHhc-CC-CeEEEEeccccCCCHHHHHHHHh-ccCcEEEE
Q 021963 238 GSDITLVGWGAQLSIMEQAC----LDAEKE-GI-SCELIDLKTLIPWDKETVEASVR-KTGRLLPR 296 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa----~~L~~~-Gi-~~~vI~~~~i~P~d~~~i~~~~~-~~~~vvvv 296 (305)
...++||+-|+.-..+.+.. +.|++. +. .+++--+..-.|-=.+.|.+.++ ..++|+++
T Consensus 13 ~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVv 78 (154)
T PLN02757 13 KDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVS 78 (154)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEE
Confidence 34688999999866665554 444432 22 23333333345766677777655 45666664
No 484
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.80 E-value=2e+02 Score=31.68 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=38.3
Q ss_pred CcEEEEEeChhH-H-------HHHHHHHHHHhcCCCeEEEEecc--------------ccCCCHHHHHHHHhcc
Q 021963 239 SDITLVGWGAQL-S-------IMEQACLDAEKEGISCELIDLKT--------------LIPWDKETVEASVRKT 290 (305)
Q Consensus 239 ~dv~Iia~G~~~-~-------~aleAa~~L~~~Gi~~~vI~~~~--------------i~P~d~~~i~~~~~~~ 290 (305)
++++|+++|... . ...++.+.|++.|+++-++|..- +-|++.+.+.+.+++.
T Consensus 7 ~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e 80 (1050)
T TIGR01369 7 KKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80 (1050)
T ss_pred cEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHh
Confidence 478888888743 2 24567777888899988888753 3478888888887765
No 485
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.75 E-value=1.8e+02 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=22.7
Q ss_pred CeEEEEeccc-----cCCCHHHHHHHHhccC-cEEEEeCCcc
Q 021963 266 SCELIDLKTL-----IPWDKETVEASVRKTG-RLLPRSSGYW 301 (305)
Q Consensus 266 ~~~vI~~~~i-----~P~d~~~i~~~~~~~~-~vvvvEe~~~ 301 (305)
++.+|-+-++ +-.|-+.|.+.+++.+ .+++|++..-
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 5666655444 5678888888888887 7777877653
No 486
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=20.66 E-value=1.4e+02 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=26.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 021963 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (305)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 207 (305)
.++.|.|.+|+..+++++-+++-|++++
T Consensus 15 ~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 15 HIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5899999999999999999999999984
No 487
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.56 E-value=1.3e+02 Score=30.25 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=27.0
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+..+|+||+.|.. .+.||+.|.+.|++|.|+.-|
T Consensus 14 ~~~~VIVIGAGia---GLsAArqL~~~G~~V~VLEAR 47 (501)
T KOG0029|consen 14 KKKKVIVIGAGLA---GLSAARQLQDFGFDVLVLEAR 47 (501)
T ss_pred CCCcEEEECCcHH---HHHHHHHHHHcCCceEEEecc
Confidence 3468999999873 456788999999999888654
No 488
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=20.52 E-value=1.7e+02 Score=19.31 Aligned_cols=23 Identities=22% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 021963 250 LSIMEQACLDAEKEGISCELIDL 272 (305)
Q Consensus 250 ~~~aleAa~~L~~~Gi~~~vI~~ 272 (305)
-..|.++++..++.+-.+.|+|.
T Consensus 27 k~~a~~~I~~Vk~~a~~a~v~d~ 49 (49)
T PF07411_consen 27 KADAEKGIESVKKNAPDAEVVDL 49 (49)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEC
T ss_pred HHHHHHHHHHHHHhCCCCccccC
Confidence 47788888888888888888773
No 489
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=20.50 E-value=1.5e+02 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=23.7
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhc
Q 021963 236 REGSDITLVGWGAQLSIMEQACLDAEKE 263 (305)
Q Consensus 236 ~~g~dv~Iia~G~~~~~aleAa~~L~~~ 263 (305)
++|..+.|.+.|.--..|+++...|-+.
T Consensus 56 ~~G~~i~i~a~G~de~~Al~aL~~li~~ 83 (88)
T COG1925 56 KKGDEIELSAEGEDEEEALEALSELIES 83 (88)
T ss_pred CCCCEEEEEEeCccHHHHHHHHHHHHHh
Confidence 5789999999999999999998876443
No 490
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=20.39 E-value=2.5e+02 Score=28.79 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCcCCCCCCCCCCchHHHHH-ccCCCcEEEeeCCHHHHHHHHHHhHh-CCCCEEE
Q 021963 154 PYGAVGHGGHYHSQSPEAFF-CHVPGLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (305)
Q Consensus 154 ~~g~~~~~g~~hs~~d~a~~-~~iP~l~V~~P~d~~e~~~~l~~a~~-~~~Pv~i 206 (305)
++|++||.+.|...==..|+ ..++| .||++-++++....++.+-. ..+-.+|
T Consensus 48 sGGGSGHEPah~G~VG~Gml~aav~G-~vFaSPs~~~i~~ai~~~~~~~~Gvl~i 101 (574)
T TIGR02361 48 SGGGSGHEPAHAGFVGKGMLTAAVAG-DVFASPSTKQILAAIRAVVGSEAGTLLI 101 (574)
T ss_pred ecCCccccccccccccCCccceeeec-cccCCCCHHHHHHHHHHhcCCCCcEEEE
Confidence 35667777776542112333 34556 58888889999999987766 4444444
No 491
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.35 E-value=2.3e+02 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEec
Q 021963 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (305)
Q Consensus 238 g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~ 273 (305)
+++++||+.|. .++|++..|.+.|.++.++...
T Consensus 157 ~~~vvIIGgG~---~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 157 PERLGIIGGGN---IGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 46799999885 4667777888889999999864
No 492
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.34 E-value=1.4e+02 Score=22.64 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCCeEEEEecc
Q 021963 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (305)
Q Consensus 237 ~g~dv~Iia~G~~~~~aleAa~~L~~~Gi~~~vI~~~~ 274 (305)
+|..++||+.|.... .-++.|.+.|-++.||....
T Consensus 6 ~~~~vlVvGgG~va~---~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAA---RKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHH---HHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEECCch
Confidence 567899999988654 33456777789999998885
No 493
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=20.33 E-value=1.7e+02 Score=20.50 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.5
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcC
Q 021963 239 SDITLVGWGAQLSIMEQACLDAEKEG 264 (305)
Q Consensus 239 ~dv~Iia~G~~~~~aleAa~~L~~~G 264 (305)
..++|-|.|.....|...++.++++.
T Consensus 31 ~~V~l~g~G~aI~kaI~vaei~K~~~ 56 (70)
T PF01918_consen 31 DEVVLKGRGKAISKAISVAEILKRRF 56 (70)
T ss_dssp SEEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999998764
No 494
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.10 E-value=2.6e+02 Score=25.51 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=35.9
Q ss_pred CCcEEEEEeCh----hHHHHHHHHHHHHh-cCCCeEEEEecc--ccCCCHHHHHHHHhccCcEEEEeCCc
Q 021963 238 GSDITLVGWGA----QLSIMEQACLDAEK-EGISCELIDLKT--LIPWDKETVEASVRKTGRLLPRSSGY 300 (305)
Q Consensus 238 g~dv~Iia~G~----~~~~aleAa~~L~~-~Gi~~~vI~~~~--i~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (305)
|.|.+++..-. .-....+-.+.+.+ -++.+-+.|.+. =.+++.+.+.++ .+.++|+-+=+..
T Consensus 96 G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L-~~~p~v~giK~s~ 164 (292)
T PRK03170 96 GADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARL-AEHPNIVGIKEAT 164 (292)
T ss_pred CCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHH-HcCCCEEEEEECC
Confidence 55655553221 11333333444433 367888888764 346888888777 4677777766543
No 495
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.08 E-value=2.7e+02 Score=25.85 Aligned_cols=35 Identities=0% Similarity=-0.013 Sum_probs=24.0
Q ss_pred CCCeEEEEeccc--cCCCHHHHHHHHhccCcEEEEeCC
Q 021963 264 GISCELIDLKTL--IPWDKETVEASVRKTGRLLPRSSG 299 (305)
Q Consensus 264 Gi~~~vI~~~~i--~P~d~~~i~~~~~~~~~vvvvEe~ 299 (305)
++.+-++|.+.. .+++.+.+.+++ +.+.|+-+=+.
T Consensus 135 ~lPv~iYn~P~~tg~~l~~~~l~~L~-~~pnivgiKds 171 (309)
T cd00952 135 EMAIAIYANPEAFKFDFPRAAWAELA-QIPQVVAAKYL 171 (309)
T ss_pred CCcEEEEcCchhcCCCCCHHHHHHHh-cCCCEEEEEec
Confidence 478888887643 478888887765 56777765443
Done!