RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021963
(305 letters)
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 206 bits (524), Expect = 7e-67
Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%)
Query: 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
+ ++ + A+ A+ + LE D V+G+DVG FGGVFRCT GL ++GKSRVF+ P+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS +F T+R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPL-TLRMP 119
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
G +GG HSQSPEA F V GL+ V+P +P AKGLL++ I +PV+F EPK LY
Sbjct: 120 CGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYN 179
Query: 215 LSVEEVPEDDYMLPL--SEAEVIREG 238
+ D + P + +G
Sbjct: 180 GPF-DGHHDRPVTPWSKHPHSAVPDG 204
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 202 bits (515), Expect = 1e-65
Identities = 134/189 (70%), Positives = 153/189 (80%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 15 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 74
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 75 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 134
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 135 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 194
Query: 215 LSVEEVPED 223
+ EEVP +
Sbjct: 195 AAAEEVPIE 203
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 196 bits (498), Expect = 4e-63
Identities = 92/191 (48%), Positives = 120/191 (62%), Gaps = 2/191 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL I L+ DP +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR +
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 219 EVPEDDYMLPL 229
EVPE +Y +P+
Sbjct: 182 EVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 193 bits (491), Expect = 4e-62
Identities = 102/189 (53%), Positives = 122/189 (64%), Gaps = 2/189 (1%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
G N+ AIN ALH +E D R V GEDVG GGVF T GL +RFG RV +TPL
Sbjct: 3 GVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPL 62
Query: 94 CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
E GI+GFA+G+A G + +AEIQF D+I+ D+++N AK RYRSG + L VR
Sbjct: 63 NEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP-LVVRT 121
Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
P G+ GG YHS SPEA F H PGL VV+P +P AKGLL + IR +PVVF EPK LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
Query: 214 RLSVEEVPE 222
R EEVPE
Sbjct: 182 RAPREEVPE 190
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 189 bits (481), Expect = 1e-60
Identities = 69/182 (37%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 45 AINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103
AINQ + LE D + ++ GE+V + G ++ + GL ++G R+ +TP+ E G G A+
Sbjct: 9 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 68
Query: 104 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163
G A G R I E ++ A DQ++N AAK Y SG + R P GA
Sbjct: 69 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVP-IVFRGPNGASAGVAA 127
Query: 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPED 223
HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + +Y + E P +
Sbjct: 128 QHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPE 186
Query: 224 DY 225
Sbjct: 187 AQ 188
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 166 bits (420), Expect = 1e-51
Identities = 104/185 (56%), Positives = 124/185 (67%), Gaps = 2/185 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR V GEDVG GGVF T GL ++G RV +TPL E I
Sbjct: 3 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF + R P G
Sbjct: 63 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVV-RMPSGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 181
Query: 219 EVPED 223
EVPE+
Sbjct: 182 EVPEE 186
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 65.9 bits (160), Expect = 5e-14
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 224 DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETV 283
DY LP+ +A + REG D+TL+ +G + + QA + K G+S E++DL+TL+PWD E V
Sbjct: 1 DYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAV 60
Query: 284 EASVRKTGRLLPRSSGYWRFWC 305
SV KTGR++ S
Sbjct: 61 MNSVAKTGRVVLVSDAPRHASF 82
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 62.9 bits (152), Expect = 6e-13
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 226 MLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEA 285
++P+ +A++ R+G+ IT+V + +A KEG+ CE+I+++T+ P D ET+EA
Sbjct: 1 LIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEA 60
Query: 286 SVRKTGRLLPRSSGYWRF 303
SV KT L+ G+ +F
Sbjct: 61 SVMKTNHLVTVEGGWPQF 78
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 60.9 bits (147), Expect = 3e-12
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 225 YMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC-LDAEKEGISCELIDLKTLIPWDKETV 283
Y +PLS+AEVI+EGSD+TLV WG Q+ ++ + + EK G+SCE+IDL+T+IPWD +T+
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61
Query: 284 EASVRKTGRLLPRSSGYWRFWC 305
SV KTGRLL
Sbjct: 62 CKSVIKTGRLLISHEAPLTGGF 83
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 57.4 bits (138), Expect = 5e-11
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 225 YMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVE 284
Y +PL +A + R G+D++++ +G + + + AE+ G+ E+IDL++L P D +T+
Sbjct: 2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQV---AAEESGVDAEVIDLRSLWPLDLDTIV 58
Query: 285 ASVRKTGRLLPRSSGYWRF 303
SV+KTGR +
Sbjct: 59 ESVKKTGRCVVVHEATRTC 77
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 57.1 bits (137), Expect = 7e-11
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 231 EAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290
+A++ REG DIT++ +GA + +A + EKEGIS E++DL+T+ P D ET+ SV KT
Sbjct: 2 KADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKT 61
Query: 291 GRLLPRSSGYWRFWC 305
GR + R
Sbjct: 62 GRAIV-VQEAQRQAG 75
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 53.3 bits (127), Expect = 2e-09
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 224 DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETV 283
DY++ + +A V REG D+TLV +G +++ +A AE+ S E++DL+TL P D +TV
Sbjct: 1 DYVVEIGKARVAREGDDVTLVTYG---AVVHKALEAAERVKASVEVVDLQTLNPLDFDTV 57
Query: 284 EASVRKTGRLLPRSSGYW 301
SV KTGRL+
Sbjct: 58 LKSVSKTGRLIIAHDSPK 75
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 38.8 bits (90), Expect = 2e-04
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLL 294
++ +V G+ +E+ +G LI ++ P+ E A++ + +++
Sbjct: 9 PDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVI 66
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 30.9 bits (70), Expect = 0.080
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 213 YRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
RL+ + ++ + E D+ LV A + ++ + +
Sbjct: 10 KRLTEDVALDETMVWNEDI-----EMLDLHLVATSALIGVVHRVSYEL 52
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 25.0 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 233 EVIREGSDITLVGWGAQLSIMEQACL 258
E+ G DI VG A +EQ
Sbjct: 51 ELTVSGPDIEAVGQTAAD--IEQLTR 74
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 25.9 bits (56), Expect = 7.5
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 153 APYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
A+G H H + E F+C+ ++
Sbjct: 54 PHSDALGVLPHIHQKHYENFYCNKGSFQLWA 84
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 168
Score = 25.1 bits (54), Expect = 7.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 163 HYHSQSPEAFFCHVPGLKVVIPR 185
Y + P + CH +PR
Sbjct: 145 DYLQRYPNGYTCHFVRPGWRLPR 167
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 25.2 bits (54), Expect = 9.8
Identities = 20/162 (12%), Positives = 39/162 (24%), Gaps = 18/162 (11%)
Query: 107 AMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166
+ +I + N A + + + +VG GG
Sbjct: 162 VGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITG 221
Query: 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYM 226
+ PG +++ +G +L+ VE + D
Sbjct: 222 IA-RKLKEKCPGCRIIGV----DPEGSILAEPE------ELNQTEQTTYEVEGIGYDFIP 270
Query: 227 LPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCE 268
L V + A + +EG+ C
Sbjct: 271 TVLDRTVVDK-------WFKSNDEEAFTFARMLIAQEGLLCG 305
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,918
Number of extensions: 55321
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 18
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)