BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021965
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 232 SIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYA------FEYLNADPIKARAFM 285
++R+LA A ER+K +++S QA +EID L E Y FE LNAD +
Sbjct: 256 AVRRLATACERAKRTLSSST--QASIEIDSLYEGIDFYTSITRARFEELNADLFRG---- 309
Query: 286 TYDP 289
T DP
Sbjct: 310 TLDP 313
>pdb|4FPP|A Chain A, Bacterial Phosphotransferase
pdb|4FPP|B Chain B, Bacterial Phosphotransferase
pdb|4FPP|C Chain C, Bacterial Phosphotransferase
Length = 247
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 216 PRGSDALQDAMLAVASSIRKLADAMERSKTAINAS 250
P D DAM +ASS RKLAD ++ ++ A AS
Sbjct: 74 PSAQDMRDDAMNLIASSARKLADLLQFTRVAFGAS 108
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 173 LSPSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSD--ALQDAMLAVA 230
+ S+EEA + GTE EY GS + P QLP RP G+ + + +
Sbjct: 298 IGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGIL 357
Query: 231 SSIRKLADAMERSKTAIN-ASELLQA-------VMEIDGLEEAKQMYAFEYLNADPIKAR 282
+S+ + S IN AS+ LQ VME DG+ EA + + P R
Sbjct: 358 NSLMNVF-----SHHHINIASQFLQTDGEVGYLVMEADGVGEASDA-VLQEIREIPGTIR 411
Query: 283 AFMTY 287
A + Y
Sbjct: 412 ARLLY 416
>pdb|4FMT|A Chain A, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|B Chain B, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|C Chain C, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|D Chain D, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
Length = 228
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 216 PRGSDALQDAMLAVASSIRKLADAMERSKTAINAS 250
P D DAM +ASS RKLAD ++ ++ A AS
Sbjct: 55 PSAQDMRDDAMNLIASSARKLADLLQFTRVAFGAS 89
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 107 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 144
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 107 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 144
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 107 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 144
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 107 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 144
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 107 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 144
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 190 TGSPE--YMPDGSQDPPLVPPLRQLPKRPRGSDALQDAM 226
TG PE + P G +D P PP +LP +GSD L+D
Sbjct: 119 TGGPEVPFHP-GREDKPEPPPEGRLPDATKGSDHLRDVF 156
>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
Length = 347
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 199 GSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIRKLADAMERSKT 245
G + P +P L QL K L D +LA+ K+A A++ +
Sbjct: 17 GMESPSALPSLDQLLKEQGADQTLTDLILAILDRCGKIASALQGTSV 63
>pdb|2Y2W|A Chain A, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|B Chain B, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|C Chain C, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|D Chain D, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|E Chain E, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|F Chain F, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum
Length = 574
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 116 YIAAHP--DARGFRGKQIEMYDELKIVC-----GNYQAPSRWAKTKDGSHPTEIRNCEDD 168
Y +HP D GFR +++ EL + C GN+ + W +DG P E R D
Sbjct: 80 YEPSHPTADENGFRQDVLDLVKELGVTCVRYPGGNFVSNYNW---EDGIGPRENRPMRRD 136
Query: 169 SASFLSPSSEEASD 182
A + ++E D
Sbjct: 137 LAWHCTETNEMGID 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,302,734
Number of Sequences: 62578
Number of extensions: 388630
Number of successful extensions: 1090
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 22
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)