BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021965
         (304 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880 OS=Arabidopsis thaliana
           GN=At2g29880 PE=2 SV=1
          Length = 308

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 24/254 (9%)

Query: 1   MDQYEYQGQRREMKHKGRNVVWS----IAMDKCLIEALAIQARTGN-KIDKCFNENAYTA 55
           M+  +  G+  + K KG  + WS      +   L++A+    R  N  I K   E     
Sbjct: 1   MESGDQAGETSKKKKKGPYMSWSDQECYELTAILVDAIKRGWRDKNGTISKTTVERKILP 60

Query: 56  ACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLL-SQDGFHWNPNTKMIECDNDDLWK 114
               +N +F  N      ++R+K++KK Y V   L     GF W+P TK      DD+W 
Sbjct: 61  L---LNKKFKCNKTYTNYLSRMKSMKKEYSVYAALFWFSSGFGWDPITKQFTAP-DDVWA 116

Query: 115 RYIAAHPDARGFRGKQIEMYDELKIVCGNYQAPSRWAKTKDGSHPTEIRNCEDDSASFLS 174
            Y+  HP+    R    E +++L+++  +  A    A    G    E    EDD  +  +
Sbjct: 117 AYLMGHPNHHHMRTSTFEDFEDLQLIFESAIAKGNNAFGLGGDSNAETFEEEDDLQAGDN 176

Query: 175 PSSEEASDTDGTESYTGSPEYMPDGSQDPPLVPPLRQLPKRPRGSDALQDAMLAVASSIR 234
            +  E +D +  E+              P    P R+  K  R  D   D++    SS +
Sbjct: 177 VNHMEINDDEVNETL-------------PKEKLPTRKRSKTNRNGDR-SDSINHGESSEK 222

Query: 235 KLADAMERSKTAIN 248
            L++ +      IN
Sbjct: 223 VLSEMIGVGTNIIN 236


>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70
           PE=2 SV=1
          Length = 649

 Score = 35.4 bits (80), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 12/64 (18%)

Query: 232 SIRKLADAMERSKTAINASELLQAVMEIDGLEEAKQMYA------FEYLNADPIKARAFM 285
           ++R+LA A ER+K  +++S   QA +EID L E    Y       FE LNAD  +     
Sbjct: 259 AVRRLATACERAKRTLSSS--TQASIEIDSLYEGVDFYTSITRARFEELNADLFRG---- 312

Query: 286 TYDP 289
           T DP
Sbjct: 313 TLDP 316


>sp|E9Q7X6|HEG1_MOUSE Protein HEG homolog 1 OS=Mus musculus GN=Heg1 PE=1 SV=1
          Length = 1337

 Score = 32.0 bits (71), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 147 PSRWAKTKDGSHPTEIRNCEDDSAS-FLSPSSEEASDTDGTESYTGSPEYMP----DGSQ 201
           P   + T  G   TE+   E+ S S FL+PSS + +D    E  T    Y+       SQ
Sbjct: 874 PLTTSTTSAGERTTELGRAEESSPSHFLTPSSPQTTDVSTAEMLTS--RYITFAAQSTSQ 931

Query: 202 DPPLVPPL 209
            P  +PPL
Sbjct: 932 SPTALPPL 939


>sp|Q62796|RBP1_RAT RalA-binding protein 1 OS=Rattus norvegicus GN=Ralbp1 PE=1 SV=3
          Length = 647

 Score = 31.6 bits (70), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 157 SHPTEIRNCEDDSASFLSPSSEEASDTDGTESY-TGSPEYMPDGSQDPP 204
           S P+E R  E  S    +PSSEE S T   E Y TG P    D   +PP
Sbjct: 10  SSPSEHRRAEHGSGLTRTPSSEEISPTKFPELYRTGEPSPPHDILHEPP 58


>sp|P36730|VE1_HPV52 Replication protein E1 OS=Human papillomavirus type 52 GN=E1 PE=3
           SV=1
          Length = 647

 Score = 31.6 bits (70), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 31  IEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKV----------------- 73
           +EA+ I+ +TG+ I +  +ENAY +    ++   + N+NN++                  
Sbjct: 20  VEAI-IEKQTGDNISEDEDENAYDSGTDLIDFIDDSNINNEQAEHEAARALFNAQEGEDD 78

Query: 74  VNRLKTIKKRYKVMRDLLSQDGF--HWNPNTKMIECDNDDLWKRYIAAHPDARGFRGKQI 131
           ++ +  +K+++    +   QDG   H +P  K I  + + +  +    H +  G+   ++
Sbjct: 79  LHAVSAVKRKFTSSPESAGQDGVEKHGSPRAKHICVNTECVLPKRKPCHVEDSGYGNSEV 138

Query: 132 E---MYDELKIVCGNYQAPS 148
           E   M D++    G++Q+ S
Sbjct: 139 EAQQMADQVDGQNGDWQSNS 158


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,827,864
Number of Sequences: 539616
Number of extensions: 4866352
Number of successful extensions: 14356
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14347
Number of HSP's gapped (non-prelim): 24
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)