Query 021965
Match_columns 304
No_of_seqs 161 out of 545
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 98.3 1.1E-06 3.8E-11 64.8 6.7 72 19-96 4-78 (86)
2 2llk_A Cyclin-D-binding MYB-li 96.2 0.0077 2.6E-07 42.5 5.2 46 20-83 24-69 (73)
3 1ug2_A 2610100B20RIK gene prod 95.8 0.02 6.9E-07 41.6 6.0 63 12-88 25-88 (95)
4 1irz_A ARR10-B; helix-turn-hel 95.8 0.028 9.7E-07 38.4 6.2 58 15-84 3-60 (64)
5 3sjm_A Telomeric repeat-bindin 95.6 0.048 1.7E-06 37.3 7.1 48 20-82 12-60 (64)
6 1guu_A C-MYB, MYB proto-oncoge 95.4 0.036 1.2E-06 36.0 5.6 45 20-80 4-48 (52)
7 1x41_A Transcriptional adaptor 95.4 0.079 2.7E-06 35.6 7.4 44 20-79 9-52 (60)
8 2roh_A RTBP1, telomere binding 95.3 0.063 2.1E-06 41.6 7.5 58 14-83 26-83 (122)
9 2cqq_A RSGI RUH-037, DNAJ homo 95.2 0.065 2.2E-06 37.6 6.8 50 20-83 9-58 (72)
10 1ity_A TRF1; helix-turn-helix, 95.2 0.067 2.3E-06 37.0 6.9 49 17-80 8-57 (69)
11 2yum_A ZZZ3 protein, zinc fing 95.2 0.07 2.4E-06 37.5 7.0 48 20-78 9-56 (75)
12 2cqr_A RSGI RUH-043, DNAJ homo 95.1 0.049 1.7E-06 38.3 5.9 51 19-82 18-68 (73)
13 1w0t_A Telomeric repeat bindin 95.1 0.052 1.8E-06 35.5 5.7 48 20-82 3-51 (53)
14 2cu7_A KIAA1915 protein; nucle 95.1 0.088 3E-06 36.7 7.2 44 20-80 10-53 (72)
15 2d9a_A B-MYB, MYB-related prot 95.0 0.069 2.4E-06 35.8 6.2 45 19-79 8-52 (60)
16 2aje_A Telomere repeat-binding 94.8 0.032 1.1E-06 42.2 4.5 58 13-82 7-64 (105)
17 2elk_A SPCC24B10.08C protein; 94.7 0.13 4.4E-06 34.3 6.9 45 20-79 10-54 (58)
18 2juh_A Telomere binding protei 94.7 0.059 2E-06 41.7 5.8 60 12-83 10-69 (121)
19 2cjj_A Radialis; plant develop 94.6 0.11 3.6E-06 38.4 6.8 56 19-87 8-63 (93)
20 2lr8_A CAsp8-associated protei 93.5 0.0067 2.3E-07 41.7 0.0 59 13-86 7-66 (70)
21 1gvd_A MYB proto-oncogene prot 94.4 0.061 2.1E-06 34.9 4.7 44 20-79 4-47 (52)
22 2yus_A SWI/SNF-related matrix- 94.4 0.078 2.7E-06 37.9 5.6 45 19-80 18-62 (79)
23 2din_A Cell division cycle 5-l 94.3 0.12 4.2E-06 35.3 6.2 45 20-82 10-54 (66)
24 1x58_A Hypothetical protein 49 93.9 0.25 8.4E-06 33.4 6.8 51 18-82 7-57 (62)
25 2dim_A Cell division cycle 5-l 93.8 0.17 5.8E-06 35.0 6.2 44 20-79 10-53 (70)
26 2k9n_A MYB24; R2R3 domain, DNA 93.8 0.16 5.4E-06 38.3 6.5 47 20-83 54-100 (107)
27 3osg_A MYB21; transcription-DN 93.4 0.13 4.5E-06 40.0 5.7 48 20-84 63-110 (126)
28 2ckx_A NGTRF1, telomere bindin 93.3 0.2 6.9E-06 36.0 6.0 51 21-83 2-52 (83)
29 1gv2_A C-MYB, MYB proto-oncoge 91.8 0.27 9.2E-06 36.7 5.3 45 20-81 57-101 (105)
30 2iw5_B Protein corest, REST co 90.9 0.4 1.4E-05 40.9 5.9 52 17-85 131-182 (235)
31 2ltp_A Nuclear receptor corepr 89.1 0.067 2.3E-06 39.1 0.0 48 20-84 17-64 (89)
32 3osg_A MYB21; transcription-DN 88.3 0.95 3.3E-05 34.9 6.0 44 19-79 11-54 (126)
33 2hzd_A Transcriptional enhance 87.8 0.75 2.6E-05 32.8 4.5 65 19-85 6-76 (82)
34 1h8a_C AMV V-MYB, MYB transfor 87.5 0.56 1.9E-05 36.3 4.2 45 20-81 80-124 (128)
35 3zqc_A MYB3; transcription-DNA 87.1 0.37 1.3E-05 37.6 2.9 42 21-79 56-97 (131)
36 2eqr_A N-COR1, N-COR, nuclear 87.0 0.76 2.6E-05 30.8 4.1 53 13-82 6-58 (61)
37 3hm5_A DNA methyltransferase 1 86.8 1.6 5.3E-05 32.0 5.9 56 20-87 31-86 (93)
38 2k9n_A MYB24; R2R3 domain, DNA 84.9 2.4 8.2E-05 31.6 6.4 43 20-78 2-44 (107)
39 1h89_C C-MYB, MYB proto-oncoge 84.7 0.97 3.3E-05 36.3 4.4 46 19-81 110-155 (159)
40 1fex_A TRF2-interacting telome 84.2 2.4 8.2E-05 28.2 5.4 53 19-78 2-54 (59)
41 1ign_A Protein (RAP1); RAP1,ye 83.4 0.64 2.2E-05 40.0 2.9 50 19-79 8-57 (246)
42 1gv2_A C-MYB, MYB proto-oncoge 83.0 1.9 6.5E-05 31.9 5.1 44 20-79 5-48 (105)
43 1h8a_C AMV V-MYB, MYB transfor 82.2 2.6 8.9E-05 32.4 5.8 44 20-79 28-71 (128)
44 1wgx_A KIAA1903 protein; MYB D 78.8 2.1 7.1E-05 29.9 3.7 48 20-80 9-56 (73)
45 1h89_C C-MYB, MYB proto-oncoge 74.8 4.5 0.00015 32.3 5.3 44 20-79 59-102 (159)
46 2blf_B SORB, sulfite\:cytochro 66.5 9.9 0.00034 26.5 4.9 38 47-84 44-81 (81)
47 4iej_A DNA methyltransferase 1 64.5 17 0.00058 26.4 5.8 51 21-83 32-82 (93)
48 3zqc_A MYB3; transcription-DNA 64.0 4 0.00014 31.5 2.6 42 21-78 4-45 (131)
49 2xag_B REST corepressor 1; ami 62.4 8 0.00028 36.7 4.8 49 19-84 380-428 (482)
50 2g3q_A Protein YBL047C; endocy 41.5 47 0.0016 19.9 4.4 32 250-282 5-36 (43)
51 2odb_B Serine/threonine-protei 39.7 18 0.00061 21.1 2.1 23 94-117 12-34 (35)
52 2ooa_A E3 ubiquitin-protein li 39.6 37 0.0013 21.8 3.6 35 249-284 11-45 (52)
53 2qme_I CRIB domain of the seri 38.4 9.2 0.00031 22.6 0.6 23 95-118 13-35 (36)
54 1vg5_A RSGI RUH-014, rhomboid 37.5 49 0.0017 22.8 4.4 21 253-274 33-53 (73)
55 3htu_A Vacuolar protein-sortin 33.8 7.5 0.00026 27.4 -0.3 28 258-286 43-70 (79)
56 2lnh_A N-WAsp, neural wiskott- 32.6 17 0.00057 24.6 1.3 26 93-119 7-33 (65)
57 1z96_A DNA-damage, UBA-domain 30.3 77 0.0026 18.3 4.0 31 250-281 5-35 (40)
58 1wji_A Tudor domain containing 30.0 72 0.0025 21.1 4.2 24 250-274 10-33 (63)
59 2jv3_A ETS1 proto-oncogene; ET 25.9 1.1E+02 0.0038 22.6 5.0 71 12-83 34-107 (110)
60 1sv0_A ETS DNA-binding protein 25.1 1.7E+02 0.0058 20.5 5.6 68 16-85 7-77 (85)
61 1ify_A HHR23A, UV excision rep 24.6 69 0.0024 19.9 3.1 24 250-274 9-32 (49)
62 1sxd_A GA repeat binding prote 24.2 1.4E+02 0.0047 21.3 5.1 71 9-82 13-86 (91)
63 1bwx_A Parathyroid hormone; pe 23.9 41 0.0014 20.1 1.7 13 288-300 16-28 (39)
64 2d9s_A CBL E3 ubiquitin protei 23.5 70 0.0024 20.6 2.9 26 253-279 13-38 (53)
65 3fxd_A Protein ICMQ; helix bun 22.6 1.2E+02 0.0039 19.8 3.8 44 22-65 5-51 (57)
66 3a9f_A Cytochrome C; alpha hel 22.3 59 0.002 23.3 2.7 36 49-84 57-92 (92)
67 1veg_A NEDD8 ultimate buster-1 21.0 89 0.0031 22.0 3.4 11 248-258 42-52 (83)
68 2cuf_A FLJ21616 protein; homeo 20.4 2.3E+02 0.0078 19.9 10.0 70 12-89 4-82 (95)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.33 E-value=1.1e-06 Score=64.75 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=59.6
Q ss_pred CcCCChHHHHHHHHHHHHH---HHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021965 19 NVVWSIAMDKCLIEALAIQ---ARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMRDLLSQDG 95 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~---~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~~~l~~~SG 95 (304)
.-.||++++..||++..+. ...|. -+...|..|+..|.+ .|...|..||++||+.|++.|+.++.-...||
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~-----~~~~~W~~Ia~~m~~-~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG 77 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSK-----SNKHLWEQISSKMRE-KGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNG 77 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccc-----cchHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4589999999999999873 33332 478999999999995 68899999999999999999998887655555
Q ss_pred c
Q 021965 96 F 96 (304)
Q Consensus 96 ~ 96 (304)
-
T Consensus 78 ~ 78 (86)
T 2ebi_A 78 S 78 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.20 E-value=0.0077 Score=42.53 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=37.2
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
-.||++++..|+++..+. |+ .|..|+..| .-|..||+|||..|++.
T Consensus 24 ~~wT~EED~~L~~l~~~~---G~---------kW~~IA~~l------gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKH---GN---------DWATIGAAL------GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CSSCHHHHHHHHHHHHHH---SS---------CHHHHHHHH------TSCHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHH---CC---------CHHHHHHHh------CCCHHHHHHHHHHHHHH
Confidence 489999999999988654 64 299999887 35788999999988653
No 3
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.83 E-value=0.02 Score=41.59 Aligned_cols=63 Identities=13% Similarity=0.361 Sum_probs=48.1
Q ss_pred cccCCCCC-cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 021965 12 EMKHKGRN-VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVMR 88 (304)
Q Consensus 12 ~~~~~~~~-~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~~ 88 (304)
..+++|.. +.||.+.|+.+|..|-+ .|. +..+|..|+..|. +.+..|+++||..|.+.|...+
T Consensus 25 ~~~s~Ge~VvlWTRe~DR~IL~~cQ~---~G~------s~~tFa~iA~~L~-----Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 25 KVSSTGEKVVLWTREADRVILTMCQE---QGA------QPHTFSVISQQLG-----NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCCCCCSSSCHHHHHHHHHHHHH---TTS------CTTTHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHCS
T ss_pred eecCCCCEEEEeccccCHHHHHHHHh---cCC------ChhHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHh
Confidence 36677776 57999999998877743 343 3567888888874 3588999999999999887543
No 4
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.76 E-value=0.028 Score=38.42 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=44.1
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 15 HKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 15 ~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
.+.++..||++....|++.+.+. | .+ +..+..|.+.++. ..+|..||++|+...|...
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~L---G--~~----~AtPk~Il~~M~v---~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHL---G--VE----RAVPKKILDLMNV---DKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHH---C--TT----TCCHHHHHHHHCC---TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHh---C--CC----CCCcHHHHHHcCC---CCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999998644 5 12 2456678877764 3589999999998776543
No 5
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=95.61 E-value=0.048 Score=37.30 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=37.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFN-LNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g-~~~t~~q~knr~~~lk~ 82 (304)
-.||++++..|++++... |.. .|..|+..+ + ..-|..||++||..|.+
T Consensus 12 ~~WT~eED~~L~~~V~~~---G~~--------~W~~Ia~~~----~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKY---GEG--------NWAAISKNY----PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHH---CTT--------CHHHHHHHS----CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcc---CCC--------chHHHHhhc----CCCCCCHHHHHHHHHHHhc
Confidence 479999999999988665 421 399998653 3 25799999999987764
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=95.40 E-value=0.036 Score=36.03 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTI 80 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~l 80 (304)
..||++++..|++++.+. |+. .|..|+..|. .-|..||++||..+
T Consensus 4 ~~Wt~eED~~L~~~v~~~---G~~--------~W~~Ia~~~~-----~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQN---GTD--------DWKVIANYLP-----NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHH---CSS--------CHHHHHHTST-----TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh---CCC--------CHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 479999999999988665 531 4999998763 47899999999753
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.36 E-value=0.079 Score=35.58 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
..||++++..|++++... |. .-|..|+..|. ..|..||++||..
T Consensus 9 ~~WT~eED~~L~~~v~~~---G~--------~~W~~Ia~~~~-----~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDC---GF--------GNWQDVANQMC-----TKTKEECEKHYMK 52 (60)
T ss_dssp SSSCHHHHHHHHHHHHHT---CT--------TCHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---Cc--------CcHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 479999999999987543 42 14999999883 4789999999973
No 8
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.28 E-value=0.063 Score=41.63 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred cCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 14 KHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 14 ~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
..+..+-.||++++..|++.+... |.. .|..|+..+...| ..-|..||++||..+.+.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~---G~g--------~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHL---GTG--------RWRDVKFRAFENV-HHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHH---SSS--------CHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH---CCC--------ChHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 334455789999999999998765 531 5999998765545 467999999999877653
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.21 E-value=0.065 Score=37.59 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=39.2
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
..||.++++.|..+|... -.| ++.-|..|+..++ .|..+|++||+.|...
T Consensus 9 ~~WT~eE~k~fe~al~~~-p~~-------t~~RW~~IA~~lg------Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKF-PGG-------TPGRWEKIAHELG------RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHS-CTT-------CTTHHHHHHHHHT------SCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHC-CCC-------CCcHHHHHHHHhC------CCHHHHHHHHHHHHHh
Confidence 479999999999988533 111 2467999999873 7999999999988765
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.21 E-value=0.067 Score=37.01 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 021965 17 GRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNL-NLNNQKVVNRLKTI 80 (304)
Q Consensus 17 ~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~-~~t~~q~knr~~~l 80 (304)
..+..||++++..|++++... |.. .|..|+..| ++ .-|..||++||..+
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~---G~~--------~W~~Ia~~~----~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKY---GEG--------NWSKILLHY----KFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHH---CSS--------CHHHHHHHS----CCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH---CCC--------cHHHHHHHc----CcCCCCHHHHHHHHHHH
Confidence 344689999999999988655 521 499998876 33 67999999999755
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.07 Score=37.52 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=36.4
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLK 78 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~ 78 (304)
-.||++++..|++++... |. ......-|..|+..|. ..|..||++||.
T Consensus 9 ~~WT~eEd~~L~~~v~~~---g~---~~~~~~~W~~IA~~~~-----~Rt~~qcr~r~~ 56 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKY---PP---EEVESRRWQKIADELG-----NRTAKQVASQVQ 56 (75)
T ss_dssp SCCCHHHHHHHHHHHHHS---CC---CSCHHHHHHHHHHHHS-----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh---CC---CCCCcccHHHHHHHhC-----CCCHHHHHHHHH
Confidence 489999999999987543 42 1123468999999873 488999999994
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.13 E-value=0.049 Score=38.34 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=39.6
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
+..||.++++.|++++... |. + .+.-|..|+..| + ..|..||++||..|..
T Consensus 18 ~~~WT~eEd~~L~~al~~~---g~--~---~~~rW~~IA~~v----p-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQY---PR--G---SSDCWDKIARCV----P-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHS---CS--S---SHHHHHHHGGGC----S-SSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHc---CC--C---CCchHHHHHHHc----C-CCCHHHHHHHHHHHHH
Confidence 3579999999999988543 31 1 467899999876 2 5899999999997754
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.11 E-value=0.052 Score=35.48 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=37.2
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNL-NLNNQKVVNRLKTIKK 82 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~-~~t~~q~knr~~~lk~ 82 (304)
-.||++++..|++++... |. ..|..|+..| ++ .-|..||++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~---G~--------~~W~~Ia~~~----~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY---GE--------GNWSKILLHY----KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH---CT--------TCHHHHHHHS----CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH---Cc--------CCHHHHHHHc----CCCCCCHHHHHHHHHHHHc
Confidence 479999999999988655 42 1499998876 33 4799999999987653
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.07 E-value=0.088 Score=36.75 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=35.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTI 80 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~l 80 (304)
..||++++..|++++... |+ .|..|+..|- .-|..||+|||..+
T Consensus 10 ~~WT~eEd~~l~~~~~~~---G~---------~W~~Ia~~~~-----~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKF---GR---------RWTKISKLIG-----SRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCHHHHHHHHHHHHHT---CS---------CHHHHHHHHS-----SSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---Cc---------CHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 489999999999987554 64 4999988662 47889999999754
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=94.99 E-value=0.069 Score=35.79 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=34.8
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
+..||++++..|++++.+. |. ..|..|+..|. .-|..||++||..
T Consensus 8 k~~Wt~eED~~L~~~v~~~---G~--------~~W~~Ia~~~~-----~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQF---GQ--------QDWKFLASHFP-----NRTDQQCQYRWLR 52 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHT---CT--------TCHHHHHHHCS-----SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh---CC--------CCHHHHHHHcc-----CCCHHHHHHHHHH
Confidence 3489999999999887553 42 14999998863 4789999999974
No 16
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.84 E-value=0.032 Score=42.19 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=42.2
Q ss_pred ccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 13 MKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 13 ~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
...+..+-.||++++..|++.+... |.. .|..|+..+...| ..-|..+|++||..|.+
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~---G~g--------~W~~I~~~~~~~f-~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKL---GTG--------RWRDVKLCAFEDA-DHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHH---CSS--------SHHHHHSSSSSST-TCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHh---CCC--------ChHHHHHHhcccc-CCCCHHHHHHHHHHHHh
Confidence 3345556799999999999988665 531 5999988654333 46799999999987665
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=94.70 E-value=0.13 Score=34.30 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=35.1
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
-.||++++..|++++... |. ..|..|+..| |...|..||++||..
T Consensus 10 ~~WT~eED~~L~~~v~~~---G~--------~~W~~IA~~~----~~~Rt~~qcr~r~~~ 54 (58)
T 2elk_A 10 ENWGADEELLLIDACETL---GL--------GNWADIADYV----GNARTKEECRDHYLK 54 (58)
T ss_dssp CCCCHHHHHHHHHHHHHT---TT--------TCHHHHHHHH----CSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---Cc--------CCHHHHHHHH----CCCCCHHHHHHHHHH
Confidence 369999999999987544 42 2499998765 447899999999974
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.67 E-value=0.059 Score=41.72 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=45.4
Q ss_pred cccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 12 EMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 12 ~~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
+.+.+.++-.||++++..|++.+... |+ -.|..|+..+...| ..-|..+|++||..|.+.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~---G~--------G~W~~Ia~~~~~~f-~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHL---GT--------GRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHH---GG--------GCHHHHHHHHCSCC-SSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHH---CC--------CCHHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 34445556799999999999988665 43 15999999875544 357889999999887764
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=94.59 E-value=0.11 Score=38.38 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=42.5
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVM 87 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~ 87 (304)
...||.++++.|++++... |.. .+.-|..|+..| + ..|..||++||..|..+-+.+
T Consensus 8 ~~~WT~eEd~~L~~al~~~---~~~-----~~~rW~~IA~~v----p-GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY---DKD-----TPDRWANVARAV----E-GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS---CTT-----CTTHHHHHHHHS----T-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc---CCC-----CCchHHHHHHHc----C-CCCHHHHHHHHHHHHHHHHHh
Confidence 4589999999999988643 211 235799999977 2 489999999999987765444
No 20
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.50 E-value=0.0067 Score=41.69 Aligned_cols=59 Identities=17% Similarity=0.381 Sum_probs=44.9
Q ss_pred ccCCCCC-cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 021965 13 MKHKGRN-VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKV 86 (304)
Q Consensus 13 ~~~~~~~-~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~ 86 (304)
.+++|.. +.||.+.|+.+|..|-+ .| .+++.|..|+..|| .+.+||++||..|.+.|..
T Consensus 7 ~~~~ge~vvlWTReeDR~IL~~cq~---~G------~s~~tfa~iA~~Ln------ks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 7 IKKKGEIIILWTRNDDRVILLECQK---RG------PSSKTFAYLAAKLD------KNPNQVSERFQQLMKLFEK 66 (70)
Confidence 5666665 68999999998877632 24 34578888888773 5889999999999988753
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.44 E-value=0.061 Score=34.95 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=34.6
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
..||++++..|++++... |. ..|..|+..|. .-|..||++||..
T Consensus 4 ~~Wt~eED~~L~~~v~~~---G~--------~~W~~Ia~~~~-----~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKY---GP--------KRWSVIAKHLK-----GRIGKQCRERWHN 47 (52)
T ss_dssp CSCCHHHHHHHHHHHHHH---CT--------TCHHHHHTTST-----TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---Cc--------ChHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 479999999999987654 53 14999998763 4688999999964
No 22
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.41 E-value=0.078 Score=37.88 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=35.4
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTI 80 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~l 80 (304)
+..||++++..|++++... | ..|..|+..+- ..|..||++||..+
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~---G---------~~W~~IA~~v~-----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMY---K---------DDWNKVSEHVG-----SRTQDECILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHS---S---------SCHHHHHHHHS-----SCCHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHHh---C---------CCHHHHHHHcC-----CCCHHHHHHHHHHh
Confidence 4689999999999987543 3 14999998773 58999999999743
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.12 Score=35.30 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=34.2
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
..||++++..|+++... -|+ .|..|+. |- | -|..||++||..+-+
T Consensus 10 ~~WT~eED~~L~~~~~~---~g~---------~W~~Ia~-~~---g--Rt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 10 TEWSREEEEKLLHLAKL---MPT---------QWRTIAP-II---G--RTAAQCLEHYEFLLD 54 (66)
T ss_dssp CCCCHHHHHHHHHHHHH---CTT---------CHHHHHH-HH---S--SCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---cCC---------CHHHHhc-cc---C--cCHHHHHHHHHHHhC
Confidence 47999999999888432 242 4999999 53 3 889999999986644
No 24
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=93.90 E-value=0.25 Score=33.45 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=39.9
Q ss_pred CCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 18 RNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 18 ~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
.+-.||++++.+|++.+.+. |. .|..|+..+ .|-..-|.-.|++||+.|.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~---G~---------~W~~I~~~y--~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM---GN---------HWNSILWSF--PFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH---CS---------CHHHHHHHS--CCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH---hH---------hHHHHHHhC--CCccCcccchHHHHHHHHHh
Confidence 45689999999999988666 53 399999766 24445688899999998875
No 25
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.17 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
-.||++++..|++++... |. ..|..|+..|. .-|..||++||..
T Consensus 10 ~~Wt~eED~~L~~~v~~~---G~--------~~W~~Ia~~l~-----~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKY---GK--------NQWSRIASLLH-----RKSAKQCKARWYE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHHT---CS--------SCHHHHHHHST-----TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---Cc--------CCHHHHHHHhc-----CCCHHHHHHHHHH
Confidence 489999999999987654 41 14999998874 5789999999963
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=93.77 E-value=0.16 Score=38.28 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=38.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
-.||++++..|++++.+. |+ .|..|+..| ..-|..||+|||..|.+.
T Consensus 54 ~~WT~eEd~~L~~~~~~~---G~---------~W~~Ia~~l-----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEY---GP---------KWNKISKFL-----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CCCCHHHHHHHHHHHHHT---CS---------CHHHHHHHH-----SSSCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHh---Cc---------CHHHHHHHC-----CCCCHHHHHHHHHHHHhh
Confidence 479999999999987654 53 499999866 357899999999988765
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.43 E-value=0.13 Score=39.98 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=38.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
..||++++..|++++.+. |+ .|..|+..| + .-|..||+|||..|.+..
T Consensus 63 ~~WT~eEd~~L~~~v~~~---G~---------~W~~Ia~~l----~-gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEY---GR---------QWAIIAKFF----P-GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCCHHHHHHHHHHHHHH---CS---------CHHHHHTTS----T-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHH---Cc---------CHHHHHHHc----C-CCCHHHHHHHHHHHHHhc
Confidence 379999999999998666 53 299998744 2 578999999999887764
No 28
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=93.25 E-value=0.2 Score=36.04 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 21 VWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 21 ~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
.||++++..|++.+... |+. .|..|+......| ..-|..+||+||..+.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~---G~g--------~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL---GTG--------RWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH---CSS--------CHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---CCC--------CcHHHHHhhcccc-CCCCHHHHHHHHHHHHHh
Confidence 59999999999998665 531 5889988642222 357999999999877653
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=91.78 E-value=0.27 Score=36.71 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIK 81 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk 81 (304)
..||++++..|++++.+. |+ .|..|+..| ..-|..||+|||..+.
T Consensus 57 ~~Wt~eEd~~L~~~~~~~---G~---------~W~~Ia~~l-----~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRL---GN---------RWAEIAKLL-----PGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCHHHHHHHHHHHHHH---SS---------CHHHHHTTC-----TTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHh---CC---------CHHHHHHHc-----CCCCHHHHHHHHHHHH
Confidence 479999999999987655 53 399998644 2578999999998764
No 30
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=90.89 E-value=0.4 Score=40.90 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 021965 17 GRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYK 85 (304)
Q Consensus 17 ~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~ 85 (304)
.....||+++...|++.+... |+ .|..|+..+ ...|..||+++|..+|+.|+
T Consensus 131 k~s~~WTeEE~~lFleAl~kY---GK---------DW~~IAk~V-----gTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKY---GR---------DFQAISDVI-----GNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH---SS---------CHHHHHHHH-----SSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHH---Cc---------CHHHHHHHc-----CCCCHHHHHHHHHHHHHHhh
Confidence 345689999999999988766 63 299998875 35899999999987776543
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=89.07 E-value=0.067 Score=39.11 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=37.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
..||++++..|++++... |+ .|..|+..|- .-|..||+|||..+.+.+
T Consensus 17 ~~WT~eEd~~l~~~~~~~---G~---------~W~~IA~~l~-----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEH---GR---------NWSAIARMVG-----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 479999999999988665 42 3899988774 356679999998766654
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=88.34 E-value=0.95 Score=34.94 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=34.4
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
+..||++++..|++++... |. .|..|+..|. .-+..||+.||..
T Consensus 11 k~~WT~eED~~L~~~v~~~---G~---------~W~~Ia~~~~-----~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQH---GS---------DWKMIAATFP-----NRNARQCRDRWKN 54 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHH---TT---------CHHHHHHTCT-----TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh---CC---------CHHHHHHHcC-----CCCHHHHHHHHhh
Confidence 3589999999999988665 42 3999988653 4688899999873
No 33
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.80 E-value=0.75 Score=32.84 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=48.1
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCC-----CCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKID-----KCF-NENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYK 85 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~-----~~f-~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~ 85 (304)
..+|++..+.+|++.|.-.-..|.+.- +-| -. =.-|+..+..++|..-|+.|+-+|+..||+.+.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gR--NelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGR--NELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCT--HHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccch--hHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 459999999999999977765554321 111 11 123666677789999999999999999998763
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=87.51 E-value=0.56 Score=36.32 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIK 81 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk 81 (304)
..||++++..|++++.+. |+ .|..|+..| + .-|..||+|||..+.
T Consensus 80 ~~WT~eEd~~L~~~~~~~---G~---------~W~~Ia~~l----~-gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRL---GN---------RWAEIAKLL----P-GRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCCHHHHHHHHHHHHHH---CS---------CHHHHGGGS----T-TCCHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHH---Cc---------CHHHHHHHC----C-CCCHHHHHHHHHHHH
Confidence 479999999999988665 53 399998643 2 578999999998654
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=87.11 E-value=0.37 Score=37.59 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 21 VWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 21 ~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
.||++++..|++++.+. |+ .|..|+..|. .-|..||+|||..
T Consensus 56 ~Wt~eEd~~L~~~~~~~---G~---------~W~~Ia~~l~-----gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKL---GS---------KWSVIAKLIP-----GRTDNAIKNRWNS 97 (131)
T ss_dssp CCCHHHHHHHHHHHHHS---CS---------CHHHHTTTST-----TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---Cc---------CHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 79999999999987544 53 2999887442 5788999999964
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.96 E-value=0.76 Score=30.78 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=37.7
Q ss_pred ccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 13 MKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 13 ~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
.+.+.....||+++.+.|++.+... |. .|..|+..| ...|..||.++|-.+|+
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~---gk---------~w~~Ia~~l-----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQH---PK---------NFGLIASYL-----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHS---TT---------CHHHHHHHC-----TTSCHHHHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHh---CC---------CHHHHHHHc-----CCCCHHHHHHHHHHhcC
Confidence 3344445689999999999999765 41 477776443 25788899888866553
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=86.83 E-value=1.6 Score=32.03 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=42.4
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRYKVM 87 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y~~~ 87 (304)
-.||.+++..|++||.+- |.| |..|+..|.-.-...-|.+.||+||-.+.+.....
T Consensus 31 ~~WTkEETd~Lf~L~~~f---dlR---------W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRF---DLR---------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT---TTC---------HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh---CCC---------eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999665 544 88888877632224589999999998877765443
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=84.89 E-value=2.4 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=33.7
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLK 78 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~ 78 (304)
..||++++..|++++... |. ..|..|+..|. .-|..||+.||.
T Consensus 2 ~~Wt~eED~~L~~~v~~~---g~--------~~W~~Ia~~~~-----~Rt~~qcr~Rw~ 44 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY---GA--------KDWIRISQLMI-----TRNPRQCRERWN 44 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH---CS--------SCHHHHHHHTT-----TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---CC--------CCHHHHhhhcC-----CCCHHHHHHHHH
Confidence 379999999999988655 42 14999998774 467899999886
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=84.69 E-value=0.97 Score=36.30 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=36.1
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIK 81 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk 81 (304)
+..||++++..|++++.+. |+ .|..|+..| + .-|..||+|||..|.
T Consensus 110 ~~~WT~eEd~~L~~~~~~~---g~---------~W~~Ia~~l----~-gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRL---GN---------RWAEIAKLL----P-GRTDNAIKNHWNSTM 155 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHH---CS---------CHHHHHTTS----T-TCCHHHHHHHHHTTT
T ss_pred ccCCChHHHHHHHHHHHHH---CC---------CHHHHHHHC----C-CCCHHHHHHHHHHHH
Confidence 3579999999999988665 53 399998743 2 578999999998753
No 40
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=84.22 E-value=2.4 Score=28.19 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=37.8
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLK 78 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~ 78 (304)
+..+|+++|.+|++++.+....|.. ..-..-|+.+++ ..-...|..++++||.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~---~~Gn~iwk~la~----~~~~~HtwqSwRdRy~ 54 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSS---VTGNALWKAMEK----SSLTQHSWQSLKDRYL 54 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTT---TTSSHHHHHHHH----SCSSSCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCC---CccHHHHHHHHH----hHCCCCCHHHHHHHHH
Confidence 5789999999999999877544322 222367877766 1235788899999885
No 41
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=83.43 E-value=0.64 Score=40.00 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=36.8
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
+..||++++.+||++..+ -|++.. ....|..|+..|. ..|..||+|||..
T Consensus 8 k~~FT~EED~~Ile~v~k---~Gn~r~---ghk~W~~IAk~Lp-----GRT~nsIRnRw~~ 57 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRK---NPTRRT---THTLYDEISHYVP-----NHTGNSIRHRFRV 57 (246)
T ss_dssp CCCCCHHHHHHHHHHHHT---SGGGTT---CSHHHHHHTTTST-----TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCcCcc---ccccHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 358999999999988754 355422 1256999997543 5789999999975
No 42
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=82.98 E-value=1.9 Score=31.90 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
-.||++++..|++++... |. ..|..|+..|. .-|..||+.||..
T Consensus 5 ~~WT~eED~~L~~~v~~~---g~--------~~W~~Ia~~l~-----~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKY---GP--------KRWSVIAKHLK-----GRIGKQCRERWHN 48 (105)
T ss_dssp SCCCHHHHHHHHHHHHHH---CT--------TCHHHHHTTST-----TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh---CC--------CcHHHHhhhhc-----CCCHHHHHHHHHh
Confidence 379999999999988654 42 14999988763 4678999998864
No 43
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=82.19 E-value=2.6 Score=32.40 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.6
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
-.||++++..|++++... |.. .|..|+..|. .-|..||++||..
T Consensus 28 ~~Wt~eED~~L~~~v~~~---g~~--------~W~~Ia~~l~-----~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKY---GPK--------RWSDIAKHLK-----GRIGKQCRERWHN 71 (128)
T ss_dssp SCCCHHHHHHHHHHHHHT---CSC--------CHHHHHHHSS-----SCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---CCC--------CHHHHHHHhc-----CCcHHHHHHHHHH
Confidence 479999999999887543 421 3999998764 4678899999864
No 44
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.79 E-value=2.1 Score=29.87 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=36.4
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTI 80 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~l 80 (304)
..||.++++.|.+.|... -.+ ++.-|..|+..+ |- .|.++|+.||..|
T Consensus 9 ~~WT~eE~k~fe~ALa~~-~~~-------tp~rWe~IA~~V----~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASL-PKH-------KPGFWSEVAAAV----GS-RSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHS-CSS-------SSSHHHHHHHHT----TT-SCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHC-CCC-------CccHHHHHHHHc----CC-CCHHHHHHHHHHH
Confidence 479999999999988633 111 245899998855 33 8999999999876
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=74.76 E-value=4.5 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=34.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021965 20 VVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKT 79 (304)
Q Consensus 20 ~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~ 79 (304)
..||++++..|++++... |.. .|..|+..|. .-|..||++||..
T Consensus 59 ~~Wt~eEd~~L~~~v~~~---g~~--------~W~~Ia~~l~-----~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKY---GPK--------RWSVIAKHLK-----GRIGKQCRERWHN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHH---CSC--------CHHHHHHTST-----TCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh---Ccc--------cHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 589999999999988554 431 3999987663 4688999999864
No 46
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=66.47 E-value=9.9 Score=26.51 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 47 CFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 47 ~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
.++...|..++..+...||..++.++++.=...|...|
T Consensus 44 ~~~~~~W~~~v~~M~~~~g~~ls~~e~~~I~~YL~~~y 81 (81)
T 2blf_B 44 GKGQAFWDAEVQKMIKVYHAPVDEADAKAIADYLAKTY 81 (81)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999998888887665
No 47
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=64.52 E-value=17 Score=26.41 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=36.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 21 VWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 21 ~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
.||.+++..|.++|.+- +. -|..|...+.-.-...-|.++||.|+-.+-+.
T Consensus 32 ~WT~eETd~LfdLc~~f---dl---------Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRF---DL---------RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TBCHHHHHHHHHHHHHT---TT---------CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc---CC---------CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999665 32 37777777653322467999999998654443
No 48
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=64.03 E-value=4 Score=31.50 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021965 21 VWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLK 78 (304)
Q Consensus 21 ~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~ 78 (304)
.||++++..|++++... |.. .|..|+..|. .-|..||+.||.
T Consensus 4 ~Wt~eED~~L~~~v~~~---g~~--------~W~~Ia~~~~-----~Rt~~qcr~Rw~ 45 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN---GPQ--------NWPRITSFLP-----NRSPKQCRERWF 45 (131)
T ss_dssp SCCHHHHHHHHHHHHHH---CSC--------CGGGGTTSCT-----TSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---CcC--------CHHHHHHHHC-----CCCHHHHHHHHh
Confidence 69999999999888655 421 3777877552 468899999885
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=62.36 E-value=8 Score=36.70 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=38.0
Q ss_pred CcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 19 NVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 19 ~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
...||+++...|++.|... | + .|..|+..+ | +.|..||+++|...|+.+
T Consensus 380 ~~~WT~eE~~~f~~al~~y---G-k--------dw~~IA~~V----g-TKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKY---G-R--------DFQAISDVI----G-NKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHH---T-T--------CHHHHHHHH----S-SCCHHHHHHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHH---C-c--------CHHHHHHHh----C-CCCHHHHHHHHHHHHHHh
Confidence 4799999999999988766 5 2 389998765 3 469999999987555443
No 50
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.52 E-value=47 Score=19.87 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhcCHHHHH
Q 021965 250 SELLQAVMEIDGLEEAKQMYAFEYLNADPIKAR 282 (304)
Q Consensus 250 ~~~i~~l~~ipgl~~e~~~~A~~~l~~d~~~a~ 282 (304)
++.++.|.+| ||+.+.-..|+..--.|...|-
T Consensus 5 e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~ 36 (43)
T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAAT 36 (43)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHH
Confidence 4567778888 7887777777766644554443
No 51
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=39.69 E-value=18 Score=21.08 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=17.5
Q ss_pred CCceeeCCCCccccCChHHHHHHH
Q 021965 94 DGFHWNPNTKMIECDNDDLWKRYI 117 (304)
Q Consensus 94 SG~gWD~~~~~i~a~~~e~W~~~i 117 (304)
+-.|||+.++.++-- ++.|+.++
T Consensus 12 ~Hvg~d~~tG~f~Gl-p~eW~~ll 34 (35)
T 2odb_B 12 VHTSFDPKEGKFVGL-PPQWQNIL 34 (35)
T ss_dssp EEEEEETTTTEEESC-CHHHHHHH
T ss_pred eeeeECCCCCcccCC-CHHHHHHh
Confidence 456999999966654 67898876
No 52
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.59 E-value=37 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhcCHHHHHHh
Q 021965 249 ASELLQAVMEIDGLEEAKQMYAFEYLNADPIKARAF 284 (304)
Q Consensus 249 ~~~~i~~l~~ipgl~~e~~~~A~~~l~~d~~~a~~F 284 (304)
+++-|+.|++| ||+.+....|+..-..|-..|.-|
T Consensus 11 ~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~Aani 45 (52)
T 2ooa_A 11 VDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSI 45 (52)
T ss_dssp CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 34677778887 788888888887775555555444
No 53
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=38.44 E-value=9.2 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=9.2
Q ss_pred CceeeCCCCccccCChHHHHHHHH
Q 021965 95 GFHWNPNTKMIECDNDDLWKRYIA 118 (304)
Q Consensus 95 G~gWD~~~~~i~a~~~e~W~~~ik 118 (304)
=.|||+.++-++-- ++.|+.+++
T Consensus 13 Hvg~d~~tG~~~gl-p~~W~~ll~ 35 (36)
T 2qme_I 13 HVGFDAVTGEFTGM-PEQWARLLQ 35 (36)
T ss_dssp EECCBTTTTBCC------------
T ss_pred EcccCCCCCcccCC-CHHHHHHHh
Confidence 35899998866653 788988875
No 54
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.54 E-value=49 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=8.4
Q ss_pred HHHhhcCCChhHHHHHHHHHHH
Q 021965 253 LQAVMEIDGLEEAKQMYAFEYL 274 (304)
Q Consensus 253 i~~l~~ipgl~~e~~~~A~~~l 274 (304)
|+.|.+| ||+.+.-..|+...
T Consensus 33 I~~L~eM-GF~r~~a~~AL~~~ 53 (73)
T 1vg5_A 33 IQKLVAM-GFDRTQVEVALAAA 53 (73)
T ss_dssp HHHHHTT-TCCHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHh
Confidence 3334444 34444444443333
No 55
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=33.80 E-value=7.5 Score=27.43 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.7
Q ss_pred cCCChhHHHHHHHHHHHhcCHHHHHHhhc
Q 021965 258 EIDGLEEAKQMYAFEYLNADPIKARAFMT 286 (304)
Q Consensus 258 ~ipgl~~e~~~~A~~~l~~d~~~a~~Fl~ 286 (304)
+.-|++.+.+.+|+.+| ....+|.+|..
T Consensus 43 ef~gmd~~~L~kaL~~L-~k~gkA~i~~~ 70 (79)
T 3htu_A 43 EFHGLDEATLLRALQAL-QQEHKAEIITV 70 (79)
T ss_dssp TTTTCCHHHHHHHHHHH-HHTTSEEEECC
T ss_pred cccCCCHHHHHHHHHHH-HHcCCEEEEec
Confidence 45578999999999999 58899999864
No 56
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=32.57 E-value=17 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.9
Q ss_pred CCCceeeCCCC-ccccCChHHHHHHHHh
Q 021965 93 QDGFHWNPNTK-MIECDNDDLWKRYIAA 119 (304)
Q Consensus 93 ~SG~gWD~~~~-~i~a~~~e~W~~~ik~ 119 (304)
.+=.|||++++ .++-- ++-|+.+++.
T Consensus 7 v~HVG~D~~tGf~~~gl-p~eW~~ll~~ 33 (65)
T 2lnh_A 7 IGHVGWDPNTGFDLNNL-DPELKNLFDM 33 (65)
T ss_dssp CCSCCEETTTEECGGGC-CTTHHHHHHH
T ss_pred eeeeeeCCCCCcCCcCC-CHHHHHHHHH
Confidence 35679999998 55543 5679999864
No 57
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=30.27 E-value=77 Score=18.25 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhcCHHHH
Q 021965 250 SELLQAVMEIDGLEEAKQMYAFEYLNADPIKA 281 (304)
Q Consensus 250 ~~~i~~l~~ipgl~~e~~~~A~~~l~~d~~~a 281 (304)
++.|..|.+| ||+.+.-..|+..--.|...|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A 35 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVA 35 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHH
Confidence 4567777777 777766666666553344443
No 58
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.01 E-value=72 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHH
Q 021965 250 SELLQAVMEIDGLEEAKQMYAFEYL 274 (304)
Q Consensus 250 ~~~i~~l~~ipgl~~e~~~~A~~~l 274 (304)
++.|+.|.+| ||+.+.-..|+..-
T Consensus 10 ~~~I~~L~~M-GF~~~~a~~AL~~~ 33 (63)
T 1wji_A 10 EKALKHITEM-GFSKEASRQALMDN 33 (63)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHh
Confidence 3455555666 56555555555544
No 59
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=25.92 E-value=1.1e+02 Score=22.65 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=48.4
Q ss_pred cccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HHHHHHhCCCCCHHHHHHHHHHHHHH
Q 021965 12 EMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAAC---IAVNTRFNLNLNNQKVVNRLKTIKKR 83 (304)
Q Consensus 12 ~~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~---~~ln~~~g~~~t~~q~knr~~~lk~~ 83 (304)
...-......||.++-..-|...+++.....-.-..|.-.|-.-|. +.|-.+.+ .+..+.+.+|+..||+.
T Consensus 34 rl~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p-~~~GdiL~~hL~~Lk~~ 107 (110)
T 2jv3_A 34 RLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAP-DFVGDILWEHLEILQKE 107 (110)
T ss_dssp HTTCCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSC-HHHHHHHHHHHHHHHHT
T ss_pred HhCCCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcC-CCcHHHHHHHHHHHHHh
Confidence 3334445578999999999999999887654333556555544443 44555555 35788999999998874
No 60
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=25.07 E-value=1.7e+02 Score=20.52 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=47.8
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 021965 16 KGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAAC---IAVNTRFNLNLNNQKVVNRLKTIKKRYK 85 (304)
Q Consensus 16 ~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~---~~ln~~~g~~~t~~q~knr~~~lk~~y~ 85 (304)
+.....||.++-..-|..++++.....-.-..|.-.|-.-|. +.|-.+++ ...+.+.+++..||+.+.
T Consensus 7 p~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p--~~GdiL~~hL~~Lk~~~~ 77 (85)
T 1sv0_A 7 PSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCP--GAGDVLHNVLQMLIIESH 77 (85)
T ss_dssp CSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHST--TTHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcC--CchHHHHHHHHHHHHhhh
Confidence 344568999999999999988866543222455444443333 55777777 389999999999998764
No 61
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.58 E-value=69 Score=19.89 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=13.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHH
Q 021965 250 SELLQAVMEIDGLEEAKQMYAFEYL 274 (304)
Q Consensus 250 ~~~i~~l~~ipgl~~e~~~~A~~~l 274 (304)
++.+..|.+| ||+.+.-..|+..-
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~ 32 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRAS 32 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHh
Confidence 3455566666 56665555555544
No 62
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=24.21 E-value=1.4e+02 Score=21.30 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=47.9
Q ss_pred ccccccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HHHHHHhCCCCCHHHHHHHHHHHHH
Q 021965 9 QRREMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAAC---IAVNTRFNLNLNNQKVVNRLKTIKK 82 (304)
Q Consensus 9 ~~~~~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~---~~ln~~~g~~~t~~q~knr~~~lk~ 82 (304)
++....-+.....||..+-..-|..++++.....-.-..|.-.|-.-|. +.|-.+.+ ..+.+.+|+..||+
T Consensus 13 e~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p---~GdiL~~hL~~L~k 86 (91)
T 1sxd_A 13 EQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP---RGEILWSHLELLRK 86 (91)
T ss_dssp HHTTTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HhHHhCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCC---CchHHHHHHHHHHH
Confidence 3333444455578999999999999988876643222455555544443 45666666 28899999998886
No 63
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=23.92 E-value=41 Score=20.14 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.2
Q ss_pred ChhhhHHHHHHHh
Q 021965 288 DPRMRKIYLFRQF 300 (304)
Q Consensus 288 ~~~~R~~WL~r~l 300 (304)
-...|..||.++|
T Consensus 16 q~~~R~~WLq~~L 28 (39)
T 1bwx_A 16 NSMERVEWLRKKL 28 (39)
T ss_dssp SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456999999987
No 64
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.50 E-value=70 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhcCHH
Q 021965 253 LQAVMEIDGLEEAKQMYAFEYLNADPI 279 (304)
Q Consensus 253 i~~l~~ipgl~~e~~~~A~~~l~~d~~ 279 (304)
|+.|+++ ||+.+....|+.....|..
T Consensus 13 I~~L~~l-GF~r~~ai~AL~~a~nnve 38 (53)
T 2d9s_A 13 IERLMSQ-GYSYQDIQKALVIAHNNIE 38 (53)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHhcCCHH
Confidence 5555555 5555555555555533333
No 65
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.58 E-value=1.2e+02 Score=19.76 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHHHHhC
Q 021965 22 WSIAMDKCLIEALAIQARTGNKIDKCFNE---NAYTAACIAVNTRFN 65 (304)
Q Consensus 22 Wt~~~~~~lld~l~e~~~~G~~~~~~f~~---~~w~~i~~~ln~~~g 65 (304)
-|+++...+|..|-+.+..|..-.++|-. .....|...|..+.|
T Consensus 5 lt~eq~~aILkaLdeaIe~GPWe~SNFLRvIGKnL~eIRd~F~~~i~ 51 (57)
T 3fxd_A 5 LSDEQKETILKALNDAIEKGPWDKSNFLRVIGKKLIAIRDRFLKRIG 51 (57)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 47888899999999999999988888854 345556666655544
No 66
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=22.25 E-value=59 Score=23.30 Aligned_cols=36 Identities=0% Similarity=-0.046 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 021965 49 NENAYTAACIAVNTRFNLNLNNQKVVNRLKTIKKRY 84 (304)
Q Consensus 49 ~~~~w~~i~~~ln~~~g~~~t~~q~knr~~~lk~~y 84 (304)
+++.|..++..+...+|..++.+..+.=.+.|...|
T Consensus 57 ~~e~w~~iv~~M~~mpg~~Is~eda~~Iv~YLa~~y 92 (92)
T 3a9f_A 57 KTGQVNLIVKRMQGFPGSGISDDDAKTIGIWLHEKF 92 (92)
T ss_dssp TTTCHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 347899999999999999999999988888887765
No 67
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.04 E-value=89 Score=22.02 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=4.5
Q ss_pred CHHHHHHHhhc
Q 021965 248 NASELLQAVME 258 (304)
Q Consensus 248 s~~~~i~~l~~ 258 (304)
....++.+|..
T Consensus 42 ~~~~A~~AL~~ 52 (83)
T 1veg_A 42 DTVVAEAALRV 52 (83)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33444444443
No 68
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.41 E-value=2.3e+02 Score=19.85 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred cccCCCCCcCCChHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHH
Q 021965 12 EMKHKGRNVVWSIAMDKCLIEALAIQARTGNKIDKCFNENAYTAACIAVNTRFNL---------NLNNQKVVNRLKTIKK 82 (304)
Q Consensus 12 ~~~~~~~~~~Wt~~~~~~lld~l~e~~~~G~~~~~~f~~~~w~~i~~~ln~~~g~---------~~t~~q~knr~~~lk~ 82 (304)
+.+.+..+..||+....+|-..+.. . ...+...-..|+..++..++. .++..||++-|..=+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~----~----~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE----N----QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH----C----SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----C----CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 3456677889999987776666633 2 233466677888888855442 2899999988877777
Q ss_pred HHHHHHH
Q 021965 83 RYKVMRD 89 (304)
Q Consensus 83 ~y~~~~~ 89 (304)
.++.-..
T Consensus 76 k~kr~~~ 82 (95)
T 2cuf_A 76 EIKRRAN 82 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6665444
Done!