BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021966
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRF|A Chain A, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
pdb|4FRF|B Chain B, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
Length = 275
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 209/274 (76%), Gaps = 5/274 (1%)
Query: 11 GHKAGKGKLGPLVDDSGCFYKPYQCDDRGSKEVAFYTSFSSNTKIPAHIRRFFPVFYGTK 70
G GK GPLVDD G F+KP Q D RG EV FY SFSSNT++P HI R+FPV++GT+
Sbjct: 1 GSHMKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQ 60
Query: 71 LVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTS 130
VE SDG+ + +VL++L++ PS+MD+K+G+RTWYP AS++YI++C +KD TTT
Sbjct: 61 AVEGSDGAAM---MVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTV 117
Query: 131 LLGFRISGLQIYENKESGFWKPVKKLVQAFNVEDVQLVLRKFVSSNSPTDSNSVPDCSFA 190
GFRISG ++Y++KES FWKP +KL++ +V+ +L LRKFVSSNS +D+ S PD +FA
Sbjct: 118 SSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFA 177
Query: 191 PSVYGGSSGILAQLLELKEWFEDQTIYNLNSCSVLMVYEKESLLKGTSPGA--EIKLVDF 248
SVYGGS GIL QLLELK WFE+QT+Y+ NSCS+LMVYE ES+LKG A ++KLVDF
Sbjct: 178 SSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDF 237
Query: 249 AHVIEGTGIIDHNFLGGLCSLIKIISEILTGPDE 282
AHV++G G+IDHNFLGGLCS I I EIL PDE
Sbjct: 238 AHVLDGNGVIDHNFLGGLCSFINFIREILQSPDE 271
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 83 HIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGLQIY 142
++VL++L+ + P+I+DIK+G + +AS + ER + TT+ LGFRI G++I
Sbjct: 114 YLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQ 173
Query: 143 EN 144
+N
Sbjct: 174 KN 175
>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Inositol 1,4,5- Trisphosphate 3-kinase C
Length = 259
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 47/156 (30%)
Query: 59 IRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWY--------- 109
+R F P +YG L DG + ++DL+++ PSIMD K+G+RT+
Sbjct: 25 LRPFVPAYYGMVL---QDGQTFNQ---MEDLLADFEGPSIMDCKMGSRTYLEEELVKARE 78
Query: 110 -PQASDDYIERCFQKD----------------------RET--TTSLLGFRISGLQIYEN 144
P+ D E+ D RET +TS LGFRI G++ +
Sbjct: 79 RPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKADG 138
Query: 145 ------KESGFWKPVKKLVQAFNVEDVQLVLRKFVS 174
K++ + V K+++ F V+ ++L+K+V+
Sbjct: 139 TCNTNFKKTQALEQVTKVLEDF-VDGDHVILQKYVA 173
>pdb|2AQX|A Chain A, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
pdb|2AQX|B Chain B, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
Length = 289
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 80/268 (29%)
Query: 59 IRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWY--------- 109
+R F P ++G + DG + + DL+++ ++P +MD K+G RT+
Sbjct: 55 LRPFVPAYHGDVV---KDGERYNQ---MDDLLADFDSPCVMDCKMGVRTYLEEELTKARK 108
Query: 110 -PQASDDYIERCFQKD----------------------RET--TTSLLGFRISGLQIYEN 144
P D ++ + D RET +T+ LGFRI G++ +
Sbjct: 109 KPSLRKDMYQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDG 168
Query: 145 KESGFWKPVKKLVQAFNVEDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGSSGILAQL 204
+ +K K E V R+F N N + Y +
Sbjct: 169 SVNRDFKKTK------TREQVTEAFREFTKGN----QNIL-------IAYRDRLKAIRAT 211
Query: 205 LELKEWFEDQTIYNLNSCSVLMVYEKESLLKGTSPGAEIKLVDFAHVI---EGT------ 255
LE+ +F+ + + S+L +++K+ A++ ++DF EG
Sbjct: 212 LEISPFFK---CHEVIGSSLLFIHDKKE-------QAKVWMIDFGKTTPLPEGQTLQHDV 261
Query: 256 ----GIIDHNFLGGLCSLIKIISEILTG 279
G + +L GL +LI I++E+ G
Sbjct: 262 PWQEGNREDGYLSGLDNLIDILTEMSQG 289
>pdb|1W2C|A Chain A, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2C|B Chain B, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2D|A Chain A, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
pdb|1W2D|B Chain B, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
Length = 265
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 45/155 (29%)
Query: 59 IRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWY--------- 109
+R P F+G V DG ++ LQDL+ + P ++D K+G RT+
Sbjct: 31 LRGCVPAFHG---VVERDGES---YLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARE 84
Query: 110 ----------------PQA--SDDYIERCFQKDRE-------TTTSLLGFRISGLQIYEN 144
P+A +++ +R K R ++++ LGFRI G++ +
Sbjct: 85 RPKLRKDMYKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADG 144
Query: 145 KESGFWKPVKKLVQAFNV--EDVQ---LVLRKFVS 174
S +K + Q V E VQ VLR++++
Sbjct: 145 SCSTDFKTTRSREQVLRVFEEFVQGDEEVLRRYLN 179
>pdb|1W2F|A Chain A, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Substituted
With Selenomethionine
pdb|1W2F|B Chain B, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Substituted
With Selenomethionine
Length = 276
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 45/155 (29%)
Query: 59 IRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWY--------- 109
+R P F+G V DG ++ LQDL+ + P ++D K G RT+
Sbjct: 42 LRGCVPAFHG---VVERDGES---YLQLQDLLDGFDGPCVLDCKXGVRTYLEEELTKARE 95
Query: 110 ----------------PQA--SDDYIERCFQKDRE-------TTTSLLGFRISGLQIYEN 144
P+A +++ +R K R ++++ LGFRI G++ +
Sbjct: 96 RPKLRKDXYKKXLAVDPEAPTEEEHAQRAVTKPRYXQWREGISSSTTLGFRIEGIKKADG 155
Query: 145 KESGFWKPVKKLVQAFNV--EDVQ---LVLRKFVS 174
S +K + Q V E VQ VLR++++
Sbjct: 156 SCSTDFKTTRSREQVLRVFEEFVQGDEEVLRRYLN 190
>pdb|1TZD|A Chain A, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
pdb|1TZD|B Chain B, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
Length = 275
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 46/179 (25%)
Query: 59 IRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWY--------- 109
+R P F+G V DG ++ LQDL+ + P ++D K G RT+
Sbjct: 41 LRGCVPAFHG---VVERDGES---YLQLQDLLDGFDGPCVLDCKXGVRTYLEEELTKARE 94
Query: 110 ----------------PQA--SDDYIERCFQKDRE-------TTTSLLGFRISGLQIYEN 144
P+A +++ +R K R ++++ LGFRI G++ +
Sbjct: 95 RPKLRKDXYKKXLAVDPEAPTEEEHAQRAVTKPRYXQWREGISSSTTLGFRIEGIKKADG 154
Query: 145 KESGFWKP------VKKLVQAFNVEDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGS 197
S +K V ++ + F D +++ R D+ + D V G S
Sbjct: 155 SCSTDFKTTRSREQVTRVFEEFXQGDAEVLKRYLNRLQQIRDTLEISDFFRRHEVIGSS 213
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 68 GTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDD 115
G+ L A+ G++ IVL+D+ R ++D++ G+ ++YP S D
Sbjct: 19 GSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SFYPTVSID 65
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 39/164 (23%)
Query: 80 LSPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGL 139
+S +V + + N +NP+ + WY DY+E+ F RE + I
Sbjct: 131 ISWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDENPSWNI--- 187
Query: 140 QIY--------ENKESGFWKPVKKLVQAF-----------------------NVEDVQLV 168
++Y +NK + + VK + + N ++V+L
Sbjct: 188 KLYYNDYNEDNQNKATAIYNMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPDNVKLS 247
Query: 169 LRKFVS-----SNSPTDSNSVPDCSFAPSVYGGSSGILAQLLEL 207
L KF+S S S D + + + ++ G + + AQL +L
Sbjct: 248 LEKFISLGVEVSVSELDVTAGNNYTLPENLAVGQAYLYAQLFKL 291
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 229 EKESLLKGTSPGAEIKLVDFAHVIEGTGIIDHNFLGGLC 267
E E+L+ G PG + + A + + I++ LGG+C
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVC 41
>pdb|1S2B|A Chain A, Structure Of Scp-B The First Member Of The Eqolisin Family
Of Peptidases To Have Its Structure Determined
pdb|1S2K|A Chain A, Structure Of Scp-B A Member Of The Eqolisin Family Of
Peptidases In A Complex With A Tripeptide Ala-Ile-His
pdb|2IFR|A Chain A, Crystal Structure Of Scytalido-Glutamic Peptidase With A
Peptide Based Transition State Analog
pdb|2IFW|A Chain A, Crystal Structure Of Scytalido-glutamic Peptidase With A
Transition State Analog Inhibitor
pdb|2IFW|B Chain B, Crystal Structure Of Scytalido-glutamic Peptidase With A
Transition State Analog Inhibitor
Length = 206
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 108 WYPQASDDYIERCFQKDRETTTSLLGFR-ISGLQIYENKESGFWKPVKKLVQAFNVE--- 163
WYP+ SDD+ + S+ SG EN +G +K+ ++F+ E
Sbjct: 70 WYPEVSDDFSGITISEGDSIQMSVTATSDTSGSATLENLTTG-----QKVSKSFSNESSG 124
Query: 164 -----DVQLVLRKFVSSNS-PTDSNSVPDCSFAPSV 193
+ + ++ F NS +D VP SF+P+V
Sbjct: 125 SLCRTNAEFIIEDFEECNSNGSDCEFVPFASFSPAV 160
>pdb|2JGP|A Chain A, Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyrocidine
Synthetase Tycc
Length = 520
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 122 QKDRETTTSLLGFRISGLQIYENKESGFWKPVKKLVQAFNVEDVQLVLRKFVSSNSPTDS 181
Q+++ + L + + L Y +++ F + V+KL A ++ L F NS +
Sbjct: 382 QREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEV 441
Query: 182 NSVPDCSFAP 191
++P+C+ AP
Sbjct: 442 MTLPECTLAP 451
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,589,313
Number of Sequences: 62578
Number of extensions: 401610
Number of successful extensions: 792
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 17
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)