Query 021966
Match_columns 304
No_of_seqs 127 out of 620
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02667 inositol polyphosphat 100.0 4.1E-84 8.9E-89 601.9 26.8 283 1-288 1-285 (286)
2 PF03770 IPK: Inositol polypho 100.0 7.8E-59 1.7E-63 412.7 9.7 181 83-274 1-197 (197)
3 KOG1620 Inositol polyphosphate 100.0 2.8E-54 6.1E-59 401.2 16.6 267 2-278 3-283 (284)
4 KOG1621 1D-myo-inositol-tripho 100.0 8.9E-42 1.9E-46 317.9 8.7 222 5-278 185-457 (458)
5 PF01504 PIP5K: Phosphatidylin 93.4 0.098 2.1E-06 48.4 4.3 74 25-103 27-103 (252)
6 smart00330 PIPKc Phosphatidyli 91.0 0.4 8.7E-06 46.4 5.4 75 24-103 80-158 (342)
7 cd00139 PIPKc Phosphatidylinos 90.9 0.34 7.3E-06 46.3 4.7 74 24-102 107-185 (313)
8 PF02958 EcKinase: Ecdysteroid 82.1 0.87 1.9E-05 42.1 2.1 44 219-268 222-265 (294)
9 PLN03185 phosphatidylinositol 78.2 2.7 5.8E-05 44.9 4.3 74 24-103 455-531 (765)
10 KOG0229 Phosphatidylinositol-4 72.3 4.8 0.0001 39.9 4.1 84 23-114 148-235 (420)
11 COG5253 MSS4 Phosphatidylinosi 67.4 6.3 0.00014 40.0 3.8 91 6-106 369-468 (612)
12 KOG0230 Phosphatidylinositol-4 49.1 14 0.0003 42.1 2.9 90 9-107 1363-1463(1598)
13 PF07914 DUF1679: Protein of u 32.1 69 0.0015 31.8 4.6 59 40-115 114-172 (414)
14 cd05146 RIO3_euk RIO kinase fa 30.8 35 0.00076 30.4 2.1 34 242-275 162-196 (197)
15 PF10707 YrbL-PhoP_reg: PhoP r 25.3 69 0.0015 28.5 3.0 30 40-73 59-89 (199)
16 PF01163 RIO1: RIO1 family; I 24.3 50 0.0011 29.0 1.9 34 242-275 144-178 (188)
17 PF08566 Pam17: Mitochondrial 24.3 52 0.0011 28.9 1.9 31 40-70 116-148 (173)
18 cd05147 RIO1_euk RIO kinase fa 23.4 72 0.0016 27.6 2.7 33 242-274 155-188 (190)
19 COG0478 RIO-like serine/threon 22.2 98 0.0021 29.5 3.4 39 241-279 239-278 (304)
20 PF10957 DUF2758: Protein of u 21.6 1.9E+02 0.0041 20.9 4.1 35 92-143 25-59 (60)
No 1
>PLN02667 inositol polyphosphate multikinase
Probab=100.00 E-value=4.1e-84 Score=601.88 Aligned_cols=283 Identities=65% Similarity=1.129 Sum_probs=256.3
Q ss_pred CCCCCCccccCCCCCCCCCCcccCCCceeEeeccCCCCCcHHHHHHHHHhcCCCCccccccccccceEEEEeecCCCCCC
Q 021966 1 MLKVPDHQVAGHKAGKGKLGPLVDDSGCFYKPYQCDDRGSKEVAFYTSFSSNTKIPAHIRRFFPVFYGTKLVEASDGSGL 80 (304)
Q Consensus 1 ~l~~~~~QvaGH~~~~~~~g~l~~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~~~~~L~~f~P~y~G~~~~~~~~~~~~ 80 (304)
||||++||||||..+.+++|+|++++|+|+||+++++||.+|++||+.++++++.+..|++|+|+|+|++.++.+++
T Consensus 1 ~~~~~~hQvAGH~~~~~~~g~L~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~L~~~~P~y~G~~~~~~~~~--- 77 (286)
T PLN02667 1 DLKVPEHQVAGHRASDGKLGPLVDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDHIRRFFPVFHGTQLVEASDG--- 77 (286)
T ss_pred CCCCccccccCCccccCCccceEcCCCcEEeccCCcccchHHHHHHHHHhccccchHHHHhhCcccceeEeeccCCC---
Confidence 79999999999999888899999999999999999999999999999999765556689999999999998865433
Q ss_pred cCeEEecccccCCCCCcEEEeeecceecCCCCCHHHHHHHhhhcccCCcceecEEEeeeeeeecCCCcccccchhhhccc
Q 021966 81 SPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGLQIYENKESGFWKPVKKLVQAF 160 (304)
Q Consensus 81 ~~~I~LedLt~gf~~PcVlDiKmG~rt~~~~as~eK~~r~~~k~~~tTs~~lGfRi~Gm~v~~~~~~~~~~~~K~~Gr~l 160 (304)
..||+|||||+||++|||||||||+|||+|+||+||++|+.+|+..|||+++|||||||++|+.++++|++.+|+|||++
T Consensus 78 ~~~i~LeDLt~g~~~PcVlDlKmG~rt~~~~as~eK~~r~~~k~~~tTs~slGfRi~Gmkvy~~~~~~~~~~dK~~Gr~l 157 (286)
T PLN02667 78 SGLLVLEDLLAGYTKPCVMDVKMGSRTWYPEASEEYIQKCLKKDRETTTVSLGFRVSGFKVYDHKESEFWKAERKLVKGL 157 (286)
T ss_pred ceeEEehHHhcCCCCCeEEEEEeccEecCCCCCHHHHHHHHhhccccccccccEEEEEeEEEecCCCeeEEechHHhhcC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHhCCeeEEeeeeeEEEEecCcccC--CCC
Q 021966 161 NVEDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGSSGILAQLLELKEWFEDQTIYNLNSCSVLMVYEKESLLK--GTS 238 (304)
Q Consensus 161 t~e~~~~~l~~Ff~~~~~~~~~~~~~~~~~~~v~~~i~~~l~~L~~l~~~~~~q~~~rf~sSSLLivYD~~~~~~--~~~ 238 (304)
|.++|.++|.+||+++..... +.++.++.+|+..+..+|+||++|++||++|..|||||||||||||++.... +.+
T Consensus 158 t~~~~~~~l~~F~~~~~~~~~--~~~~~~~~~v~~~~~~iL~qL~~L~~~fe~q~~~rfysSSLLivYDg~~~~~~~~~~ 235 (286)
T PLN02667 158 DADGVRLALRKFVSSNSPADP--NPDCAFASAVYGGSHGILAQLLELKSWFEEQTLYHFFSASILIVYEGEAILKGNPED 235 (286)
T ss_pred CHHHHHHHHHHHhcCCccccc--cchhhhHHHHhhhHHHHHHHHHHHHHHHHhCCceEEEEeEEEEEEcCCccccccCCC
Confidence 999999999999998766532 2355566677655577999999999999999999999999999999986421 123
Q ss_pred CCCceEEEecCCCcCCCCCCCchHHHHHHHHHHHHHHHHcCCcccCCccc
Q 021966 239 PGAEIKLVDFAHVIEGTGIIDHNFLGGLCSLIKIISEILTGPDEHTNKAC 288 (304)
Q Consensus 239 ~~v~VrlIDFAh~~~~~~~~D~g~l~GL~nLi~il~~i~~~~~~~~~~~~ 288 (304)
..|+||||||||+++.++.+|+|||+||+|||++|++|++++.++...+|
T Consensus 236 ~~v~VkmIDFAH~~~~~~~~D~gyL~GL~nLi~~l~~il~~~~~~~~~~~ 285 (286)
T PLN02667 236 SRVEVKLVDFAHVLDGNGVIDHNFLGGLCSLIKFISEILTSPDESATSGE 285 (286)
T ss_pred CcceEEEEeCccccCCCCCCCccHHHHHHHHHHHHHHHhhChhhcCCCCC
Confidence 57999999999999988889999999999999999999999999998876
No 2
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=100.00 E-value=7.8e-59 Score=412.74 Aligned_cols=181 Identities=38% Similarity=0.586 Sum_probs=148.8
Q ss_pred eEEecccccCCCCCcEEEeeecceecCCCCCHHHHHHHhhhcccCCcceecEEEeeeeeeecCCCcccccchhhhcccCh
Q 021966 83 HIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGLQIYENKESGFWKPVKKLVQAFNV 162 (304)
Q Consensus 83 ~I~LedLt~gf~~PcVlDiKmG~rt~~~~as~eK~~r~~~k~~~tTs~~lGfRi~Gm~v~~~~~~~~~~~~K~~Gr~lt~ 162 (304)
||+|||||+||++|||||||||+|||+|+|+++|++|+.+|+..|||+++|||||||++|+++++++++++|+|||+++.
T Consensus 1 yi~LEdlt~~~~~PcVlDiKmG~rt~~~~a~~~K~~~~~~k~~~tts~~lGfRi~G~~~~~~~~~~~~~~~K~~Gr~l~~ 80 (197)
T PF03770_consen 1 YIVLEDLTYGFRKPCVLDIKMGTRTYDPDASPEKIRREEKKSRYTTSASLGFRICGMQVYDPDSGEYVKYDKYYGRSLTP 80 (197)
T ss_dssp EEEEE-TTTTSSSEEEEEEEESS-SS-HHHHBCHHHHHHHHHHCSTHHHHSEEEEEEEE-E-STTSEEEEEHHHTTH-SH
T ss_pred CceeehhhcCCCCceEEEEEEcCeEcCccccHHHHHHHHHHHccCCccccCeEEEEEEEeccCCCceEEEecHHhhhcCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHhCCeeEEeeeeeEEEEecCccc--------
Q 021966 163 EDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGSSGILAQLLELKEWFEDQTIYNLNSCSVLMVYEKESLL-------- 234 (304)
Q Consensus 163 e~~~~~l~~Ff~~~~~~~~~~~~~~~~~~~v~~~i~~~l~~L~~l~~~~~~q~~~rf~sSSLLivYD~~~~~-------- 234 (304)
+++.++|..||+.+.... ....+ ++.+++||++|++||++|..||||||||||||||+...
T Consensus 81 ~~~~~~l~~Ff~~~~~~~--------~~~~~---~~~~l~~L~~L~~~~~~~~~~~f~sSSLLivYd~~~~~~~~~~~~~ 149 (197)
T PF03770_consen 81 EEVRDALKKFFNNGSSPR--------RRREL---LRSILKQLEQLREWFESQRSFRFYSSSLLIVYDGDPSRLENESSSS 149 (197)
T ss_dssp HHHHHHHHHHHT-TT-HH--------THHHH---HHHHHHHHHHHHHHHCC-CCEEEESEEEEEEEETTHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCccH--------HHHHH---HHHHHHHHHHHHHHHHhcccCeeecceEEEEEcCCccccccccccc
Confidence 999999999999875321 11222 46799999999999999999999999999999999211
Q ss_pred -------CCCCCCCceEEEecCCCcC-CCCCCCchHHHHHHHHHHHHH
Q 021966 235 -------KGTSPGAEIKLVDFAHVIE-GTGIIDHNFLGGLCSLIKIIS 274 (304)
Q Consensus 235 -------~~~~~~v~VrlIDFAh~~~-~~~~~D~g~l~GL~nLi~il~ 274 (304)
......|+||||||||+.+ ..+.+|+|||+||+|||++|+
T Consensus 150 ~~~~~~~~~~~~~~~vklIDFAH~~~~~~~~~D~g~l~GL~nLi~~le 197 (197)
T PF03770_consen 150 STSTSDSDDPPNKVDVKLIDFAHVFPNPNGGPDEGFLFGLNNLISILE 197 (197)
T ss_dssp -----------S-EEEEEE--TTEEE-TTTS--HHHHHHHHHHHHHH-
T ss_pred ccccccccCCCCcccEEEEECCCcccCCCCCCCccHHHHHHHHHHHhC
Confidence 0113689999999999998 566799999999999999986
No 3
>KOG1620 consensus Inositol polyphosphate multikinase, component of the ARGR transcription regulatory complex [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-54 Score=401.18 Aligned_cols=267 Identities=31% Similarity=0.398 Sum_probs=208.4
Q ss_pred CCCCCccccCCCCC--CCCCCcccCCCceeEeeccCCCCCc-HHHHHHHHHhcCCCCccccccccccceEEEEeecCCCC
Q 021966 2 LKVPDHQVAGHKAG--KGKLGPLVDDSGCFYKPYQCDDRGS-KEVAFYTSFSSNTKIPAHIRRFFPVFYGTKLVEASDGS 78 (304)
Q Consensus 2 l~~~~~QvaGH~~~--~~~~g~l~~~~g~i~Kp~~~~~r~~-~E~~FY~~l~~~~~~~~~L~~f~P~y~G~~~~~~~~~~ 78 (304)
.+.++.|++||... ..+.++++.+...-.++.....+.. .+..+|...........++....|.+.+.......++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T KOG1620|consen 3 MKLKDPQVWGAGEIAKDPKDGPLVEDTFREASYLKKSSRLYEISPQLYGASSSGDKILLPVSRYCHNYHLTGIYELVKDR 82 (284)
T ss_pred cccCcccccccccccCCCCCCcccccccchhhhccccccccccccccccccccCcccccccccccchhhhcccccccccc
Confidence 34566666666653 3344555443321122222111222 55566655544333344678888988887766655555
Q ss_pred CCcCeEEecccccCCCCCcEEEeeecceecCCCCCHHHHHHHhhhcccCCcceecEEEeeeeeeecCCCcccccchhhhc
Q 021966 79 GLSPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGLQIYENKESGFWKPVKKLVQ 158 (304)
Q Consensus 79 ~~~~~I~LedLt~gf~~PcVlDiKmG~rt~~~~as~eK~~r~~~k~~~tTs~~lGfRi~Gm~v~~~~~~~~~~~~K~~Gr 158 (304)
....||+|||||++|++|||||||||||||+|+||+||++++.+||..|||+++|||||||+||+..++.|++.+|+|||
T Consensus 83 ~~~~fl~LEdlt~~~~~PcVLDlKmGtrq~~~dAS~eK~~~q~~Kc~~tTs~~LG~Ri~GmqV~~~~~~~~~~~~k~~gr 162 (284)
T KOG1620|consen 83 VSAKFLLLEDLTSGYEKPCVLDLKMGTRQHGDDASEEKRARQLAKCTQTTSASLGVRICGMQVYEAENNSYVFRSKYYGR 162 (284)
T ss_pred cccchhhhHHHHHhccCcceEEeeecceecccccCHHHHHHHHHHhhcccceeeceEEeccEEEeccCceEEecchhccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHhccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHhCCeeEEeeeeeEEEEecCc----cc
Q 021966 159 AFNVEDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGSSGILAQLLELKEWFEDQTIYNLNSCSVLMVYEKES----LL 234 (304)
Q Consensus 159 ~lt~e~~~~~l~~Ff~~~~~~~~~~~~~~~~~~~v~~~i~~~l~~L~~l~~~~~~q~~~rf~sSSLLivYD~~~----~~ 234 (304)
.++.++++.++.+||+++.. ++.+++..+..+++||.+|++|++.|..|||||||||||||++. ..
T Consensus 163 ~~~~~g~~~al~~f~~~~~~----------~~~~l~~~~~~il~qL~~l~~~~~~~~~~rf~ssSlLviYd~~~~~~~~~ 232 (284)
T KOG1620|consen 163 SLSVEGFRLALMRFFHNGSK----------LRHSLVGLLVEILRQLLGLKAVLEEQEGYRFYSSSLLVIYDGEILADSGD 232 (284)
T ss_pred ccchhhHHHHHHHHHhcchh----------hhHHHHhhhHHHHHHHHHHHHHHHHhhceeeecceEEEEEeccccccCCC
Confidence 99999999999999998742 23344443567999999999999999999999999999999992 22
Q ss_pred CCCCCCCceEEEecCCCcCCCC-------CCCchHHHHHHHHHHHHHHHHc
Q 021966 235 KGTSPGAEIKLVDFAHVIEGTG-------IIDHNFLGGLCSLIKIISEILT 278 (304)
Q Consensus 235 ~~~~~~v~VrlIDFAh~~~~~~-------~~D~g~l~GL~nLi~il~~i~~ 278 (304)
+..++.|+|+||||||+++... ..|+||++||+||+++++.+++
T Consensus 233 p~~~~~v~v~lidfah~~~~~~~~d~~~~~~D~g~i~gl~~ll~~~~~~~~ 283 (284)
T KOG1620|consen 233 PEIAPEVDVKLIDFAHVTFSNTIIDHNTLGGDEGYIFGLKNLLSILRSILD 283 (284)
T ss_pred cccccccceeEeeeeecccCCceecccccccchhhHHHHHHHHHHHHhhcc
Confidence 2222479999999999986321 1399999999999999998875
No 4
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=100.00 E-value=8.9e-42 Score=317.91 Aligned_cols=222 Identities=25% Similarity=0.433 Sum_probs=186.2
Q ss_pred CCccccCCCCCCCCCCcccC-CCceeEeeccCCCCCcHHHHHHHHHhcCCCCccccccccccceEEEEeecCCCCCCcCe
Q 021966 5 PDHQVAGHKAGKGKLGPLVD-DSGCFYKPYQCDDRGSKEVAFYTSFSSNTKIPAHIRRFFPVFYGTKLVEASDGSGLSPH 83 (304)
Q Consensus 5 ~~~QvaGH~~~~~~~g~l~~-~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~~~~~L~~f~P~y~G~~~~~~~~~~~~~~~ 83 (304)
.|.|.+||.++ ++. .+|.|||... ..|-..|++++.+ .|++|+|+|||.++-++ ..|
T Consensus 185 ~WVQLsGH~Gs------f~aat~g~ilKk~c-----~~E~r~l~~lmkD-----aLrgfvPayyg~vekdg------e~f 242 (458)
T KOG1621|consen 185 KWVQLSGHEGS------FVAATPGTILKKQC-----AGEGRALKNLMKD-----ALRGFVPAYYGEVEKDG------EHF 242 (458)
T ss_pred hheeecccccc------cccCCCcchHHHhc-----chhHHHHHHHhHh-----hhcccChhhhhhhhhch------hHH
Confidence 48899999963 443 6899999988 6999999999887 59999999999998765 369
Q ss_pred EEecccccCCCCCcEEEeeecceecCCCC-------------------------C-H-H-------HHHHHhhhcccCCc
Q 021966 84 IVLQDLVSNRNNPSIMDIKIGARTWYPQA-------------------------S-D-D-------YIERCFQKDRETTT 129 (304)
Q Consensus 84 I~LedLt~gf~~PcVlDiKmG~rt~~~~a-------------------------s-~-e-------K~~r~~~k~~~tTs 129 (304)
|.||||+.+|..|||||+|||+|||.+.. + + | |-..|+-....|+|
T Consensus 243 ~qieDLL~~F~~P~iMDcKmG~RTyLEeElskarkrp~lRkDmYeKMvavDp~aPTeEE~aqgAvTKpRYMQwRE~~SST 322 (458)
T KOG1621|consen 243 IQIEDLLQQFHDPAIMDCKMGTRTYLEEELSKARKRPKLRKDMYEKMVAVDPDAPTEEERAQGAVTKPRYMQWRERESST 322 (458)
T ss_pred HHHHHHHHhcCCCeeeeeecchhHHHHHHHHhhhcCcchhHHHHHHHhccCCCCCCHHHhhcccccchhhhhhhhccccc
Confidence 99999999999999999999999996442 1 1 1 22344555678889
Q ss_pred ceecEEEeeeeeeecCCCcccccchhhhcccChHHHHHHHHHhccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHH
Q 021966 130 SLLGFRISGLQIYENKESGFWKPVKKLVQAFNVEDVQLVLRKFVSSNSPTDSNSVPDCSFAPSVYGGSSGILAQLLELKE 209 (304)
Q Consensus 130 ~~lGfRi~Gm~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~~~~~~~~~~~~~~~v~~~i~~~l~~L~~l~~ 209 (304)
++|||||.|++--+.. .+|+|.+..|.|++-.+|..||..... | ++++|++|++||.
T Consensus 323 atLGFRIEgiKk~dG~------~~~nFKktrt~EqVt~~f~dF~~g~~~--------------v---lq~yi~rLk~mR~ 379 (458)
T KOG1621|consen 323 ATLGFRIEGIKKLDGA------LEKNFKKTRTVEQVTTTFMDFFGGQRS--------------V---LQQYIERLKSMRK 379 (458)
T ss_pred ceeeeeeeehhhhcch------hhhcchhhhhHHHHHHHHHHHhcccHH--------------H---HHHHHHHHHHHHH
Confidence 9999999999887764 568999999999999999999976533 2 3579999999999
Q ss_pred HHHhCCee---EEeeeeeEEEEecCcccCCCCCCCceEEEecCCCcC-------------CCCCCCchHHHHHHHHHHHH
Q 021966 210 WFEDQTIY---NLNSCSVLMVYEKESLLKGTSPGAEIKLVDFAHVIE-------------GTGIIDHNFLGGLCSLIKII 273 (304)
Q Consensus 210 ~~~~q~~~---rf~sSSLLivYD~~~~~~~~~~~v~VrlIDFAh~~~-------------~~~~~D~g~l~GL~nLi~il 273 (304)
.+|....| ..+|||||||+|... .+.|||||||++++ .++...+|||.||+||+.||
T Consensus 380 alE~S~FF~~HEVvGSSlLfVhD~~~-------~agvWMIDFgKtsplP~gqtL~Hr~pW~eGNrEDGYL~GldNlv~IL 452 (458)
T KOG1621|consen 380 ALEHSSFFNSHEVVGSSLLFVHDTEK-------RAGVWMIDFGKTSPLPNGQTLNHRTPWIEGNREDGYLIGLDNLVKIL 452 (458)
T ss_pred HhhhcccccccccccceEEEEeeccc-------ccceEEEeccccccCCCCccccCcCCcCCCCccCceeechhhHHHHH
Confidence 99977755 589999999999875 58999999999975 24668999999999999999
Q ss_pred HHHHc
Q 021966 274 SEILT 278 (304)
Q Consensus 274 ~~i~~ 278 (304)
++|.+
T Consensus 453 ~eL~e 457 (458)
T KOG1621|consen 453 EELPE 457 (458)
T ss_pred Hhccc
Confidence 98754
No 5
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=93.43 E-value=0.098 Score=48.37 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=43.3
Q ss_pred CCceeEeeccCCCCCcHHHHHHHHHhcCC-C-CccccccccccceEEEEeecCCCCCCcCeEEecccccC-CCCCcEEEe
Q 021966 25 DSGCFYKPYQCDDRGSKEVAFYTSFSSNT-K-IPAHIRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSN-RNNPSIMDI 101 (304)
Q Consensus 25 ~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~-~-~~~~L~~f~P~y~G~~~~~~~~~~~~~~~I~LedLt~g-f~~PcVlDi 101 (304)
++.+|+|-+. ..|..+...+.... + ....=..++|+++|...+....+.....||+|||+.++ ..-...-||
T Consensus 27 D~kfiiKti~-----~~E~~~l~~~lp~Y~~~~~~~~~SlL~r~~Gl~~i~~~~~~~~~~fvVM~N~f~~~~~i~~~yDL 101 (252)
T PF01504_consen 27 DGKFIIKTIS-----KSEFKFLLKILPAYFEHMSENPNSLLPRFYGLYSIKKSNGKEKIYFVVMENLFYTPRNIHERYDL 101 (252)
T ss_dssp TSSEEEEEE------HHHHHHHHHHHHHHHHHHHHTTTSSS--EEEEEEE-EETT-EEEEEEEEE-SS-SSS--SEEEEE
T ss_pred CCCEEEEeCC-----HHHHHHHHHHHHHHHHHHHhCcCchHHHHHHHheecccCCceeEEEEEECCCccCCcccceEEec
Confidence 4559999998 89999988865421 0 00011278999999999843222234679999999988 455567888
Q ss_pred ee
Q 021966 102 KI 103 (304)
Q Consensus 102 Km 103 (304)
|=
T Consensus 102 KG 103 (252)
T PF01504_consen 102 KG 103 (252)
T ss_dssp --
T ss_pred CC
Confidence 74
No 6
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=91.05 E-value=0.4 Score=46.39 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCCceeEeeccCCCCCcHHHHHHHHHhcCC-C-CccccccccccceEEEEeecCCC-CCCcCeEEeccccc-CCCCCcEE
Q 021966 24 DDSGCFYKPYQCDDRGSKEVAFYTSFSSNT-K-IPAHIRRFFPVFYGTKLVEASDG-SGLSPHIVLQDLVS-NRNNPSIM 99 (304)
Q Consensus 24 ~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~-~-~~~~L~~f~P~y~G~~~~~~~~~-~~~~~~I~LedLt~-gf~~PcVl 99 (304)
.++.+|+|-++ ..|..+...+.... + +...=..++|++||...+....+ .....||+|+||-+ +..-..+-
T Consensus 80 ~D~rfiiKti~-----~~E~~~l~~~lp~Y~~~~~~n~~SlL~ki~Gly~i~~~~~~~~~~~fiVM~NlF~~~~~i~~~y 154 (342)
T smart00330 80 LDDRFIIKTVS-----KSEIKSLLPMLPNYYEHIVQNPNTLLPKFFGLYRVKVKGGTEKKIYFLVMENLFYSDLKVHRKY 154 (342)
T ss_pred cCCcEEEEecC-----HHHHHHHHHHHHHHHHHHHhCCCcchhhhcEEEEEEECCCcceeEEEEEEecCCCCCCceeEEE
Confidence 35569999998 89999988865431 0 00000478999999988864322 12457899999998 55555678
Q ss_pred Eeee
Q 021966 100 DIKI 103 (304)
Q Consensus 100 DiKm 103 (304)
|||=
T Consensus 155 DLKG 158 (342)
T smart00330 155 DLKG 158 (342)
T ss_pred ECCC
Confidence 8883
No 7
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=90.92 E-value=0.34 Score=46.35 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=50.6
Q ss_pred CCCceeEeeccCCCCCcHHHHHHHHHhcCCC--Ccc-ccccccccceEEEEeecCCC-CCCcCeEEecccccC-CCCCcE
Q 021966 24 DDSGCFYKPYQCDDRGSKEVAFYTSFSSNTK--IPA-HIRRFFPVFYGTKLVEASDG-SGLSPHIVLQDLVSN-RNNPSI 98 (304)
Q Consensus 24 ~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~--~~~-~L~~f~P~y~G~~~~~~~~~-~~~~~~I~LedLt~g-f~~PcV 98 (304)
.++.+|+|-++ ..|..|...+....- +.. +-..++|+|||...+....+ .....||+|+||-++ ..--.+
T Consensus 107 ~D~rfiIKti~-----~~E~~~l~~~Lp~Y~~~~~~n~~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~~~~i~~~ 181 (313)
T cd00139 107 LDDRFIIKTVS-----HSEIESLLKFLPNYYEYITQNPQNTLLPKFFGLYRVKVKSGTGKKVDFLVMENLFYSRLKIHRK 181 (313)
T ss_pred cCCcEEEEecC-----HHHHHHHHHHHHHHHHHHHhCCCCcchhhheEEEEEEEcCCCCceEEEEEEecCCCCCccceEE
Confidence 35569999998 899999988754320 000 12578999999988865421 223568999999987 333346
Q ss_pred EEee
Q 021966 99 MDIK 102 (304)
Q Consensus 99 lDiK 102 (304)
-|||
T Consensus 182 yDLK 185 (313)
T cd00139 182 YDLK 185 (313)
T ss_pred EECC
Confidence 7777
No 8
>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function. All known members of this group are proteins from drosophila and Caenorhabditis elegans.
Probab=82.13 E-value=0.87 Score=42.09 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=33.7
Q ss_pred EeeeeeEEEEecCcccCCCCCCCceEEEecCCCcCCCCCCCchHHHHHHH
Q 021966 219 LNSCSVLMVYEKESLLKGTSPGAEIKLVDFAHVIEGTGIIDHNFLGGLCS 268 (304)
Q Consensus 219 f~sSSLLivYD~~~~~~~~~~~v~VrlIDFAh~~~~~~~~D~g~l~GL~n 268 (304)
++..=+||=||++. ...+|.||||.=+..+.+..|-.|+.....
T Consensus 222 ~w~nNilf~~~~~g------~~~~~~liDfQ~~~~g~p~~Dl~~fl~~s~ 265 (294)
T PF02958_consen 222 FWTNNILFKYDDDG------KPIDVVLIDFQLARYGSPAIDLAYFLYTSL 265 (294)
T ss_pred cCHHhEeEcccccc------ccccceeeccccccCCCcHhHHHHHHHHCC
Confidence 55677788888765 247999999999988877778888776543
No 9
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=78.22 E-value=2.7 Score=44.93 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=49.5
Q ss_pred CCCceeEeeccCCCCCcHHHHHHHHHhcCCC--CccccccccccceEEEEeecCCCCCCcCeEEecccccCC-CCCcEEE
Q 021966 24 DDSGCFYKPYQCDDRGSKEVAFYTSFSSNTK--IPAHIRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNR-NNPSIMD 100 (304)
Q Consensus 24 ~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~--~~~~L~~f~P~y~G~~~~~~~~~~~~~~~I~LedLt~gf-~~PcVlD 100 (304)
.++.+|+|-++ ..|+.|...+..+.- +...-..++|+|||...+....+ ....||||+||-..- .--.+-|
T Consensus 455 ~D~rFiIKTI~-----k~E~~~l~~iLp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g-~k~~fvVM~NlF~~~~~I~~~yD 528 (765)
T PLN03185 455 QDDRFMIKTLR-----KSEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKPSSG-QKFRFVVMGNMFCTELRIHRRFD 528 (765)
T ss_pred cCCcEEEEecC-----HHHHHHHHHHHHHHHHHHhhCCCcchhhheEEEEEEeCCC-cEEEEEEEecCCCCCCccceEEE
Confidence 45669999998 899999988754320 00011367999999998864322 235699999996642 2224678
Q ss_pred eee
Q 021966 101 IKI 103 (304)
Q Consensus 101 iKm 103 (304)
||=
T Consensus 529 LKG 531 (765)
T PLN03185 529 LKG 531 (765)
T ss_pred CCC
Confidence 874
No 10
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=72.33 E-value=4.8 Score=39.87 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=55.3
Q ss_pred cCCCceeEeeccCCCCCcHHHHHHHHHhcCCC---CccccccccccceEEEEeecCCCCCCcCeEEecccccCC-CCCcE
Q 021966 23 VDDSGCFYKPYQCDDRGSKEVAFYTSFSSNTK---IPAHIRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNR-NNPSI 98 (304)
Q Consensus 23 ~~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~---~~~~L~~f~P~y~G~~~~~~~~~~~~~~~I~LedLt~gf-~~PcV 98 (304)
..|+-+|+|-++ ..|++|-..+-...- ...+=+.++|+|||...+... +..+..|+||.||...= .-=..
T Consensus 148 S~DdrFiIKTv~-----~~E~~~l~~mLp~Yy~~v~~~~~~TLl~kf~Gly~vk~~-gg~k~yfvVM~Nlf~~~~~iH~k 221 (420)
T KOG0229|consen 148 SYDDRFIIKTVR-----KSEVKVLLKMLPGYYQHVVEQNNRTLLPKFFGLYRVKPD-GGKKIYFVVMNNLFPSRLKVHRK 221 (420)
T ss_pred ecCceEEEEecc-----HHHHHHHHHHHHHHHHHHHccCCceeehhhceeEEEeeC-CCceEEEEEecccCCCccceeEE
Confidence 447779999998 899999888643210 011235789999999887643 22346799999997653 33457
Q ss_pred EEeeecceecCCCCCH
Q 021966 99 MDIKIGARTWYPQASD 114 (304)
Q Consensus 99 lDiKmG~rt~~~~as~ 114 (304)
-|+|= .|++-.|+.
T Consensus 222 yDLKG--St~~R~ask 235 (420)
T KOG0229|consen 222 YDLKG--STVGREASK 235 (420)
T ss_pred eecCC--Ccccccccc
Confidence 77773 344444443
No 11
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=67.42 E-value=6.3 Score=39.99 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=59.8
Q ss_pred CccccCCCCCCCCCCcccC-CCceeEeeccCCCCCcHHHHHHHHHhcCCC---CccccccccccceEEEEeecCCC----
Q 021966 6 DHQVAGHKAGKGKLGPLVD-DSGCFYKPYQCDDRGSKEVAFYTSFSSNTK---IPAHIRRFFPVFYGTKLVEASDG---- 77 (304)
Q Consensus 6 ~~QvaGH~~~~~~~g~l~~-~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~~---~~~~L~~f~P~y~G~~~~~~~~~---- 77 (304)
+-+.||-+++ +++.. +..+|+|-+. ..|..+++.+.-+.- ...++ .++.++||...+..-.+
T Consensus 369 ~E~~~GKSGS----ff~~trD~kfIiKti~-----hsE~~~~r~~~~eY~~~V~~np~-T~l~ki~G~yrv~~~~s~~~~ 438 (612)
T COG5253 369 WESNGGKSGS----FFLFTRDYKFIIKTIS-----HSEHICFRPMIFEYYVHVLFNPL-TLLCKIFGFYRVKSRSSISSS 438 (612)
T ss_pred eccCCCcccc----eEEEeccchhhhhhhh-----hhhHHHHHHHHHHHHHHHHcCch-HHHHHHhceeEEecccccccc
Confidence 4556777764 45544 5679999987 677766555432210 00134 78899999987754221
Q ss_pred -CCCcCeEEecccccCCCCCcEEEeeecce
Q 021966 78 -SGLSPHIVLQDLVSNRNNPSIMDIKIGAR 106 (304)
Q Consensus 78 -~~~~~~I~LedLt~gf~~PcVlDiKmG~r 106 (304)
.....||+||||.++=.---|-|+|=-++
T Consensus 439 k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~ 468 (612)
T COG5253 439 KSRKIYFIVMENLFYPHGIHRIFDLKGSMR 468 (612)
T ss_pred ccceeEEEEecccCCCCCcceEEeccCchh
Confidence 12357999999999877556899997666
No 12
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=49.08 E-value=14 Score=42.12 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=60.9
Q ss_pred ccCCCCCCCCCCccc-CCCceeEeeccCCCCCcHHHHHHHHHhcCC-C-----CccccccccccceEEEEeecCC--CC-
Q 021966 9 VAGHKAGKGKLGPLV-DDSGCFYKPYQCDDRGSKEVAFYTSFSSNT-K-----IPAHIRRFFPVFYGTKLVEASD--GS- 78 (304)
Q Consensus 9 vaGH~~~~~~~g~l~-~~~g~i~Kp~~~~~r~~~E~~FY~~l~~~~-~-----~~~~L~~f~P~y~G~~~~~~~~--~~- 78 (304)
=||-++. .+++ .|+.+|+|-+. ..|++-+..++... + ....+---+.|.+|+..+.... +.
T Consensus 1363 qGGKSgs----~F~KTlDDRFIiKq~s-----k~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgk 1433 (1598)
T KOG0230|consen 1363 QGGKSGS----FFAKTLDDRFIIKQMS-----KTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGK 1433 (1598)
T ss_pred CCCcccc----eeeccccchhhhhhcc-----HHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCc
Confidence 3555543 4554 37789999998 89999888775532 0 0012234567888998775422 22
Q ss_pred -CCcCeEEecccccCCCCCcEEEeeeccee
Q 021966 79 -GLSPHIVLQDLVSNRNNPSIMDIKIGART 107 (304)
Q Consensus 79 -~~~~~I~LedLt~gf~~PcVlDiKmG~rt 107 (304)
-...-|+||||.|+-+--.|-|||=-.|.
T Consensus 1434 e~K~DvmVMENLfY~r~vsRifDLKGS~Rn 1463 (1598)
T KOG0230|consen 1434 ETKMDVMVMENLFYGRKVSRIFDLKGSLRN 1463 (1598)
T ss_pred eeEeeeeeehhhhhccccceeeeccchhhh
Confidence 13567999999999998889999966655
No 13
>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).
Probab=32.14 E-value=69 Score=31.80 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhcCCCCccccccccccceEEEEeecCCCCCCcCeEEecccccCCCCCcEEEeeecceecCCCCCHH
Q 021966 40 SKEVAFYTSFSSNTKIPAHIRRFFPVFYGTKLVEASDGSGLSPHIVLQDLVSNRNNPSIMDIKIGARTWYPQASDD 115 (304)
Q Consensus 40 ~~E~~FY~~l~~~~~~~~~L~~f~P~y~G~~~~~~~~~~~~~~~I~LedLt~gf~~PcVlDiKmG~rt~~~~as~e 115 (304)
.+|+.||+.+.... .| .--+|++|-.......+ ....+|+||.+-.-.. +-..++.+++
T Consensus 114 NrEv~~Y~~~~k~~-~~---~l~~PKvY~~k~f~~en--~~kG~IimE~ven~~~-----------~~~~e~~~~e 172 (414)
T PF07914_consen 114 NREVNFYKIFEKFN-HP---NLPYPKVYFGKKFDEEN--KLKGFIIMEYVENVHS-----------MDMYENLSVE 172 (414)
T ss_pred HHHHHHHHHHHhcC-CC---CCCCCceeEEEecCCCC--CCCCEEEEeccCCcee-----------ecccCCCCHH
Confidence 69999999986532 00 12289999988776432 2346999998753322 3445666665
No 14
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=30.79 E-value=35 Score=30.35 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=22.6
Q ss_pred ceEEEecCCCcCCCC-CCCchHHHHHHHHHHHHHH
Q 021966 242 EIKLVDFAHVIEGTG-IIDHNFLGGLCSLIKIISE 275 (304)
Q Consensus 242 ~VrlIDFAh~~~~~~-~~D~g~l~GL~nLi~il~~ 275 (304)
++++|||.++.+... .-.+=+..=++|+...|+.
T Consensus 162 ~v~iIDF~qav~~~hp~a~~~l~RD~~ni~~fF~~ 196 (197)
T cd05146 162 KVWFIDVSQSVEPTHPHGLEFLFRDCRNVIQFFQK 196 (197)
T ss_pred cEEEEECCCceeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 689999999986433 2233344557777777753
No 15
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=25.30 E-value=69 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=22.7
Q ss_pred cHHHHHHHHHh-cCCCCccccccccccceEEEEee
Q 021966 40 SKEVAFYTSFS-SNTKIPAHIRRFFPVFYGTKLVE 73 (304)
Q Consensus 40 ~~E~~FY~~l~-~~~~~~~~L~~f~P~y~G~~~~~ 73 (304)
.+|+..|..+. ... ....++|+|||+++-+
T Consensus 59 ~~E~~~y~~l~~~~~----~~~~~i~r~~G~veT~ 89 (199)
T PF10707_consen 59 RRELRYYKQLSLRRG----VDWSHIPRFYGFVETN 89 (199)
T ss_pred HHHHHHHHHHhhccC----CcccccccEeEEEecC
Confidence 58999999987 321 3458899999998753
No 16
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=24.34 E-value=50 Score=29.02 Aligned_cols=34 Identities=9% Similarity=0.362 Sum_probs=23.1
Q ss_pred ceEEEecCCCcCCCC-CCCchHHHHHHHHHHHHHH
Q 021966 242 EIKLVDFAHVIEGTG-IIDHNFLGGLCSLIKIISE 275 (304)
Q Consensus 242 ~VrlIDFAh~~~~~~-~~D~g~l~GL~nLi~il~~ 275 (304)
.+.+|||..++.... .-.+=+..-++|+++.|+.
T Consensus 144 ~~~iIDf~qav~~~~p~a~~~l~RDi~ni~~fF~~ 178 (188)
T PF01163_consen 144 KVYIIDFGQAVDSSHPNAEELLRRDIENIIRFFKK 178 (188)
T ss_dssp CEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCcceecCCccHHHHHHHHHHHHHHHHHH
Confidence 799999999987543 2234456678899888874
No 17
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.28 E-value=52 Score=28.88 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=23.4
Q ss_pred cHHHHHHHHHhcCC-C-CccccccccccceEEE
Q 021966 40 SKEVAFYTSFSSNT-K-IPAHIRRFFPVFYGTK 70 (304)
Q Consensus 40 ~~E~~FY~~l~~~~-~-~~~~L~~f~P~y~G~~ 70 (304)
.+|.+||+.|..+. + ......+-+|-|||.-
T Consensus 116 ~Ke~eF~~rIkknRvDps~qS~sNPvPDYYGEK 148 (173)
T PF08566_consen 116 AKEKEFLARIKKNRVDPSSQSFSNPVPDYYGEK 148 (173)
T ss_pred HHHHHHHHHHHHcCCCccccccCCCCCchhhhh
Confidence 79999999998753 1 1135778899999973
No 18
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=23.36 E-value=72 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=21.2
Q ss_pred ceEEEecCCCcCCCCCCCchHHH-HHHHHHHHHH
Q 021966 242 EIKLVDFAHVIEGTGIIDHNFLG-GLCSLIKIIS 274 (304)
Q Consensus 242 ~VrlIDFAh~~~~~~~~D~g~l~-GL~nLi~il~ 274 (304)
.|++|||.-+...+......||. -++|+.+.|+
T Consensus 155 ~v~LiDFG~a~~~~~~~~~~~~~~d~~~~~~~f~ 188 (190)
T cd05147 155 KLYIIDVSQSVEHDHPHALEFLRMDCVNVNDFFR 188 (190)
T ss_pred cEEEEEccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 59999999988544334445544 3566666554
No 19
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=22.21 E-value=98 Score=29.53 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=28.5
Q ss_pred CceEEEecCCCcCCC-CCCCchHHHHHHHHHHHHHHHHcC
Q 021966 241 AEIKLVDFAHVIEGT-GIIDHNFLGGLCSLIKIISEILTG 279 (304)
Q Consensus 241 v~VrlIDFAh~~~~~-~~~D~g~l~GL~nLi~il~~i~~~ 279 (304)
-++.+|||.++++.. +.-++-+-.-++|++..|+.=...
T Consensus 239 g~~~vIDwPQ~v~~~hp~a~e~l~RDv~nii~yFrrky~~ 278 (304)
T COG0478 239 GDIVVIDWPQAVPISHPDAEELLERDVENIIKYFRRKYGY 278 (304)
T ss_pred CCEEEEeCcccccCCCCCHHHHHHhHHHHHHHHHHHhccc
Confidence 489999999998743 333455556799999999875443
No 20
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=21.56 E-value=1.9e+02 Score=20.92 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCCCcEEEeeecceecCCCCCHHHHHHHhhhcccCCcceecEEEeeeeeee
Q 021966 92 NRNNPSIMDIKIGARTWYPQASDDYIERCFQKDRETTTSLLGFRISGLQIYE 143 (304)
Q Consensus 92 gf~~PcVlDiKmG~rt~~~~as~eK~~r~~~k~~~tTs~~lGfRi~Gm~v~~ 143 (304)
+...+.|+|||..+-++.++ -.+-..++++|-+|.
T Consensus 25 ~~~~~~viDIKy~va~~~~~-----------------~~eq~y~fSamIiYk 59 (60)
T PF10957_consen 25 KLDDDQVIDIKYQVAASCDD-----------------EDEQIYCFSAMIIYK 59 (60)
T ss_pred hCCCCcEEEEEEEEEEeccC-----------------CcceeEEEEEEEEEe
Confidence 34567899999998887432 123445788888875
Done!